Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AGAP2	116986	genome.wustl.edu	37	12	58126234	58126234	+	Silent	SNP	C	C	A	rs17852479	byCluster;byFrequency;by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	58126234	58126234	C	A	SNP	AGAP2	NM_001122772	human	genbank	57_37b	-1	validated	silent	c.1746	p.L582	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Miro,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Ankyrin repeat,HMMPfam_Ank	-		
ANGPTL4	51129	genome.wustl.edu	37	19	8438716	8438716	+	Silent	SNP	G	G	A	rs11672433	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8438716	8438716	G	A	SNP	ANGPTL4	NM_139314	human	genbank	57_37b	+1	reviewed	silent	c.1167	p.P389	0.001	superfamily_Fibrinogen_a/b/g_C,HMMSmart_FBG,HMMPfam_Fibrinogen_C	superfamily_Fibrinogen_a/b/g_C,HMMSmart_FBG,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN	-		
ATAD2B	54454	genome.wustl.edu	37	2	24080330	24080330	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	24080330	24080330	T	C	SNP	ATAD2B	NM_017552	human	genbank	57_37b	-1	validated	missense	c.1523	p.D508G	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
BTBD3	22903	genome.wustl.edu	37	20	11900400	11900400	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	11900400	11900400	C	T	SNP	BTBD3	NM_014962	human	genbank	57_37b	+1	validated	missense	c.452	p.A151V	1.000	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_PHR	-	no_errors	
C4orf50	0	genome.wustl.edu	37	4	5975538	5975538	+	Missense_Mutation	SNP	G	G	A	rs16837960	byCluster;byFrequency;by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	5975538	5975538	G	A	SNP	C4orf50	NM_207405	human	genbank	57_37b	-1	predicted	missense	c.256	p.R86W	0.087	NULL	NULL	-		
CCDC22	28952	genome.wustl.edu	37	X	49103224	49103224	+	Silent	SNP	G	A	A	rs2294020	byCluster;byFrequency;by2Hit2Allele	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49103224	49103224	G	A	SNP	CCDC22	NM_014008	human	genbank	57_37b	+1	validated	silent	c.747	p.Q249	0.891	HMMPfam_DUF812	HMMPfam_DUF812	-		
CCDC88B	283234	genome.wustl.edu	37	11	64111928	64111928	+	Missense_Mutation	SNP	T	T	C	rs685870	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64111928	64111928	T	C	SNP	CCDC88B	NM_032251	human	genbank	57_37b	+1	reviewed	missense	c.1915	p.W639R	0.000	NULL	NULL	-		
CDK5R2	8941	genome.wustl.edu	37	2	219825211	219825211	+	Silent	SNP	G	G	A	rs36115038	byCluster;byFrequency;by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	219825211	219825211	G	A	SNP	CDK5R2	NM_003936	human	genbank	57_37b	+1	reviewed	silent	c.669	p.Q223	1.000	HMMPfam_CDK5_activator,superfamily_Cyclin_like	HMMPfam_CDK5_activator,superfamily_Cyclin_like	-		
DUSP1	1843	genome.wustl.edu	37	5	172195858	172195858	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	172195858	172195858	G	A	SNP	DUSP1	NM_004417	human	genbank	57_37b	-1	reviewed	silent	c.1011	p.T337	0.000	NULL	superfamily_Rhodanese-like,HMMPfam_Rhodanese,HMMSmart_RHOD,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc,PatternScan_TYR_PHOSPHATASE_1	-	no_errors	
ENSG00000244056	0	genome.wustl.edu	37	15	84948873	84948873	+	RNA	SNP	C	T	T	rs117384388	by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	84948873	84948873	C	T	SNP	ENSG00000244056	ENST00000459938	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-		
ENSG00000245358	0	genome.wustl.edu	37	5	114513587	114513588	+	RNA	DEL	AG	AG	-	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	114513587	114513588	AG	-	DEL	ENSG00000245358	ENST00000502182	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000:0.000	-	-	(deletion:rna[114513217,114516020])	no_errors	
FAM179A	165186	genome.wustl.edu	37	2	29246044	29246044	+	Missense_Mutation	SNP	T	T	C	rs6721861	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	29246044	29246044	T	C	SNP	FAM179A	NM_199280	human	genbank	57_37b	+1	validated	missense	c.1604	p.V535A	0.974	superfamily_ARM repeat	superfamily_ARM repeat	-		
FAM47B	170062	genome.wustl.edu	37	X	34960976	34960976	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	34960976	34960976	C	T	SNP	FAM47B	NM_152631	human	genbank	57_37b	+1	predicted	missense	c.28	p.P10S	0.006	NULL	NULL	-	no_errors	
FBXW10	10517	genome.wustl.edu	37	17	18682505	18682505	+	Missense_Mutation	SNP	T	T	C	rs117160613	by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18682505	18682505	T	C	SNP	FBXW10	NM_031456	human	genbank	57_37b	+1	validated	missense	c.3050	p.V1017A	0.825	NULL	superfamily_WD40 repeat-like,superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-		
FLG	2312	genome.wustl.edu	37	1	152277404	152277404	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152277404	152277404	G	A	SNP	FLG	NM_002016	human	genbank	57_37b	-1	reviewed	missense	c.9958	p.R3320C	0.000	HMMPfam_Filaggrin	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors	
GGT3P	2679	genome.wustl.edu	37	22	18769677	18769677	+	RNA	SNP	C	C	T	rs28621555	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18769677	18769677	C	T	SNP	GGT3P	NR_003267	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
HIP1R	9026	genome.wustl.edu	37	12	123333065	123333065	+	Silent	SNP	C	C	T	rs2135014	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123333065	123333065	C	T	SNP	HIP1R	NM_003959	human	genbank	57_37b	+1	validated	silent	c.210	p.Y70	0.598	HMMPfam_ANTH,superfamily_ENTH_VHS,HMMSmart_ENTH	HMMPfam_ANTH,superfamily_ENTH_VHS,HMMSmart_ENTH,superfamily_SSF109885,HMMSmart_ILWEQ,HMMPfam_I_LWEQ	-		
IGFN1	91156	genome.wustl.edu	37	1	201190732	201190732	+	Missense_Mutation	SNP	G	G	A	rs3738269	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	201190732	201190732	G	A	SNP	IGFN1	ENST00000412892	human	ensembl	57_37b	+1	known	missense	c.2311	p.G771R	0.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-		
IGSF5	150084	genome.wustl.edu	37	21	41118178	41118178	+	Nonsense_Mutation	SNP	G	A	A	rs117841904	by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	41118178	41118178	G	A	SNP	IGSF5	NM_001080444	human	genbank	57_37b	+1	provisional	nonsense	c.53	p.W18*	0.332	NULL	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG	-		
JPH3	57338	genome.wustl.edu	37	16	87678576	87678576	+	Silent	SNP	C	C	T	rs34975147	byCluster;by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	87678576	87678576	C	T	SNP	JPH3	NM_020655	human	genbank	57_37b	+1	reviewed	silent	c.1095	p.R365	0.966	NULL	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN	-		
KIAA1377	57562	genome.wustl.edu	37	11	101818866	101818866	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	101818866	101818866	A	C	SNP	KIAA1377	NM_020802	human	genbank	57_37b	+1	validated	missense	c.499	p.N167H	0.218	NULL	NULL	-	no_errors	
KPNA2	3838	genome.wustl.edu	37	17	66033483	66033483	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	66033483	66033483	C	T	SNP	KPNA2	NM_002266	human	genbank	57_37b	+1	reviewed	missense	c.85	p.R29C	1.000	HMMPfam_IBB	HMMPfam_IBB,superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors	
KRT14	3861	genome.wustl.edu	37	17	39742881	39742881	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39742881	39742881	T	A	SNP	KRT14	NM_000526	human	genbank	57_37b	-1	reviewed	missense	c.206	p.Y69F	1.000	NULL	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors	
KRTAP10-5	386680	genome.wustl.edu	37	21	45999653	45999653	+	Missense_Mutation	SNP	C	G	G	rs464391	byCluster	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45999653	45999653	C	G	SNP	KRTAP10-5	NM_198694	human	genbank	57_37b	-1	reviewed	missense	c.803	p.R268P	0.085	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-		
LOC644950	0	genome.wustl.edu	37	3	109128578	109128581	+	Frame_Shift_Del	DEL	TAGT	TAGT	-	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	TAGT	TAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	109128578	109128581	TAGT	-	DEL	LOC644950	XM_001717224	human	genbank	57_37b	-1	model	frame_shift_del	c.373_370	p.T124fs	1.000:1.000:1.000:1.000	superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone	(deletion:cds_exon[109128525,109128916])	no_errors	
LOC728196	728196	genome.wustl.edu	37	11	111383846	111383846	+	RNA	SNP	C	T	T	rs2187473	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	111383846	111383846	C	T	SNP	LOC728196	XR_040780	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.000	-	-	-		
MKRN2	23609	genome.wustl.edu	37	3	12623389	12623389	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	12623389	12623389	G	A	SNP	MKRN2	NM_014160	human	genbank	57_37b	+1	provisional	missense	c.1051	p.D351N	1.000	NULL	HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors	
MORN3	283385	genome.wustl.edu	37	12	122107317	122107317	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	122107317	122107317	C	T	SNP	MORN3	NM_173855	human	genbank	57_37b	-1	validated	missense	c.73	p.G25S	0.726	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN	-	no_errors	
MYH1	4619	genome.wustl.edu	37	17	10399397	10399397	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10399397	10399397	C	T	SNP	MYH1	NM_005963	human	genbank	57_37b	-1	reviewed	missense	c.5039	p.R1680H	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors	
MYO7B	4648	genome.wustl.edu	37	2	128386034	128386034	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	128386034	128386034	G	A	SNP	MYO7B	NM_001080527	human	genbank	57_37b	+1	provisional	silent	c.4470	p.E1490	0.999	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,superfamily_Second domain of FERM,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMPfam_FERM_M	-	no_errors	
NHLRC1	378884	genome.wustl.edu	37	6	18121861	18121861	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	18121861	18121861	G	A	SNP	NHLRC1	NM_198586	human	genbank	57_37b	-1	reviewed	missense	c.977	p.T326I	1.000	superfamily_SSF101898	superfamily_SSF57850,HMMSmart_RING,PatternScan_ZF_RING_1,superfamily_SSF101898,HMMPfam_NHL	-	no_errors	
OPCML	4978	genome.wustl.edu	37	11	132290114	132290114	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	132290114	132290114	G	T	SNP	OPCML	NM_002545	human	genbank	57_37b	-1	reviewed	silent	c.1011	p.L337	1.000	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_I-set,HMMPfam_ig	-	no_errors	
PACSIN2	11252	genome.wustl.edu	37	22	43275089	43275089	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	43275089	43275089	C	G	SNP	PACSIN2	NM_007229	human	genbank	57_37b	-1	provisional	missense	c.993	p.Q331H	1.000	NULL	HMMPfam_FCH,HMMSmart_SM00055,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
PCNX	22990	genome.wustl.edu	37	14	71374702	71374702	+	Silent	SNP	G	A	A	rs2526882	byCluster;by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	71374702	71374702	G	A	SNP	PCNX	NM_014982	human	genbank	57_37b	+1	validated	silent	c.135	p.L45	0.999	NULL	HMMPfam_Pecanex_C	-		
PGAP2	27315	genome.wustl.edu	37	11	3845190	3845190	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	3845190	3845190	C	T	SNP	PGAP2	NM_001145439	human	genbank	57_37b	+1	validated	missense	c.103	p.R35W	0.997	NULL	NULL	-	no_errors	
PLIN4	0	genome.wustl.edu	37	19	4511491	4511491	+	Silent	SNP	A	A	G	rs10423324	byCluster;byFrequency;by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4511491	4511491	A	G	SNP	PLIN4	NM_001080400	human	genbank	57_37b	-1	provisional	silent	c.2439	p.G813	0.086	NULL	superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	-		
PLIN4	0	genome.wustl.edu	37	19	4513446	4513446	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4513446	4513446	G	A	SNP	PLIN4	NM_001080400	human	genbank	57_37b	-1	provisional	missense	c.484	p.L162F	0.000	NULL	superfamily_Mannose-6-phosphate receptor binding protein 1 (Tip47) C-terminal domain	-	no_errors	
POSTN	10631	genome.wustl.edu	37	13	38172818	38172818	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	38172818	38172818	C	T	SNP	POSTN	NM_006475	human	genbank	57_37b	-1	validated	missense	c.46	p.V16I	0.134	NULL	HMMPfam_EMI,superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554	-	no_errors	
SESN2	83667	genome.wustl.edu	37	1	28598251	28598251	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	28598251	28598251	C	T	SNP	SESN2	NM_031459	human	genbank	57_37b	+1	reviewed	nonsense	c.223	p.R75*	0.973	HMMPfam_PA26,superfamily_SSF69118	HMMPfam_PA26,superfamily_SSF69118	-	no_errors	
SFRS16	11129	genome.wustl.edu	37	19	45571725	45571725	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	45571725	45571725	G	C	SNP	SFRS16	ENST00000391952	human	ensembl	57_37b	+1	known	missense	c.1714	p.A572P	0.014	NULL	HMMPfam_DRY_EERY	-	no_errors	
SLC37A1	54020	genome.wustl.edu	37	21	43987159	43987159	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	43987159	43987159	C	A	SNP	SLC37A1	NM_018964	human	genbank	57_37b	+1	reviewed	silent	c.1335	p.S445	0.038	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	-	no_errors	
SMYD1	150572	genome.wustl.edu	37	2	88387403	88387403	+	Silent	SNP	C	C	A	rs1542088	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	88387403	88387403	C	A	SNP	SMYD1	NM_198274	human	genbank	57_37b	+1	provisional	silent	c.337	p.R113	1.000	superfamily_SSF82199,HMMSmart_SET	superfamily_SSF82199,HMMSmart_SET,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,HMMPfam_SET	-		
SOX3	6658	genome.wustl.edu	37	X	139586617	139586617	+	Silent	SNP	A	A	G	rs45586631	byCluster	TCGA-AO-A12F-01	TCGA-AO-A12F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	139586617	139586617	A	G	SNP	SOX3	NM_005634	human	genbank	57_37b	-1	reviewed	silent	c.609	p.Y203	1.000	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-		
SPEG	10290	genome.wustl.edu	37	2	220348751	220348751	+	Missense_Mutation	SNP	C	C	T	rs10755037	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220348751	220348751	C	T	SNP	SPEG	NM_005876	human	genbank	57_37b	+1	validated	missense	c.6566	p.P2189L	0.006	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00219	-		
TAF1	6872	genome.wustl.edu	37	X	70608656	70608656	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70608656	70608656	A	G	SNP	TAF1	NM_004606	human	genbank	57_37b	+1	reviewed	missense	c.2698	p.M900V	1.000	NULL	HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
TG	7038	genome.wustl.edu	37	8	133899602	133899602	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	133899602	133899602	G	A	SNP	TG	NM_003235	human	genbank	57_37b	+1	reviewed	missense	c.1985	p.C662Y	1.000	superfamily_Thyroglobulin type-1 domain,HMMSmart_SM00211,HMMPfam_Thyroglobulin_1	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7579312	7579312	+	Silent	SNP	C	G	G	rs55863639	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7579312	7579312	C	G	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	silent	c.375	p.T125	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-		
TRIM6	117854	genome.wustl.edu	37	11	5632399	5632399	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5632399	5632399	C	T	SNP	TRIM6	NM_001003818	human	genbank	57_37b	+1	reviewed	missense	c.1378	p.R460C	0.682	HMMPfam_SPRY,HMMSmart_SPRY	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors	
UNC13C	440279	genome.wustl.edu	37	15	54435218	54435218	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	54435218	54435218	G	C	SNP	UNC13C	NM_001080534	human	genbank	57_37b	+1	provisional	missense	c.2987	p.S996T	1.000	NULL	superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-	no_errors	
UNC93A	54346	genome.wustl.edu	37	6	167728785	167728785	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	167728785	167728785	G	A	SNP	UNC93A	NM_018974	human	genbank	57_37b	+1	validated	missense	c.1219	p.V407M	0.846	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter,HMMPfam_DUF895	-	no_errors	
WRAP53	55135	genome.wustl.edu	37	17	7606441	7606441	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7606441	7606441	G	C	SNP	WRAP53	NM_018081	human	genbank	57_37b	+1	validated	missense	c.1399	p.V467L	1.000	superfamily_WD40_like	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMPfam_WD40,HMMSmart_WD40	-	no_errors	
ZNF320	162967	genome.wustl.edu	37	19	53385122	53385122	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53385122	53385122	C	G	SNP	ZNF320	NM_207333	human	genbank	57_37b	-1	validated	missense	c.257	p.C86S	0.000	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZXDC	79364	genome.wustl.edu	37	3	126180635	126180635	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A12F-01	TCGA-AO-A12F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	126180635	126180635	G	T	SNP	ZXDC	NM_025112	human	genbank	57_37b	-1	validated	missense	c.1870	p.P624T	0.958	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
