Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA5	23461	genome.wustl.edu	37	17	67246622	67246622	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	67246622	67246622	C	T	SNP	ABCA5	NM_018672	human	genbank	57_37b	-1	reviewed	missense	c.4676	p.R1559H	0.990	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ACOT11	26027	genome.wustl.edu	37	1	55059671	55059671	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55059671	55059671	A	G	SNP	ACOT11	NM_015547	human	genbank	57_37b	+1	reviewed	missense	c.430	p.K144E	1.000	superfamily_Thioesterase/thiol ester dehydrase-isomerase	superfamily_Thioesterase/thiol ester dehydrase-isomerase,HMMPfam_4HBT,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234	-	no_errors	
ANKRD53	79998	genome.wustl.edu	37	2	71211883	71211883	+	Missense_Mutation	SNP	G	G	T	rs11688921	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	71211883	71211883	G	T	SNP	ANKRD53	NM_001115116	human	genbank	57_37b	+1	validated	missense	c.1046	p.R349L	0.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-		
ATHL1	80162	genome.wustl.edu	37	11	293153	293153	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	293153	293153	G	T	SNP	ATHL1	ENST00000409479	human	ensembl	57_37b	+1	known	missense	c.1342	p.V448L	0.000	superfamily_Six-hairpin glycosidases,HMMPfam_Glyco_hydro_65m	superfamily_Six-hairpin glycosidases,HMMPfam_Glyco_hydro_65m	-	no_errors	
BMP15	9210	genome.wustl.edu	37	X	50659109	50659109	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	50659109	50659109	G	C	SNP	BMP15	NM_005448	human	genbank	57_37b	+1	reviewed	missense	c.681	p.L227F	0.004	NULL	superfamily_SSF57501,HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1	-	no_errors	
C10orf119	79892	genome.wustl.edu	37	10	121591004	121591005	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	121591004	121591005	CA	-	DEL	C10orf119	NM_024834	human	genbank	57_37b	-1	validated	frame_shift_del	c.1911_1910	p.V637fs	0.991:1.000	NULL	HMMPfam_DUF2044	(deletion:cds_exon[121590986,121591112])	no_errors	
CCAR1	55749	genome.wustl.edu	37	10	70509285	70509288	+	Frame_Shift_Del	DEL	GAGA	GAGA	-	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	GAGA	GAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	70509285	70509288	GAGA	-	DEL	CCAR1	NM_018237	human	genbank	57_37b	+1	validated	frame_shift_del	c.961_964	p.R324fs	1.000:1.000:1.000:1.000	NULL	superfamily_SAP domain,HMMPfam_SAP,HMMSmart_SM00513,superfamily_EF-hand	(deletion:cds_exon[70509281,70509442])	no_errors	
CCDC144A	9720	genome.wustl.edu	37	17	16638032	16638032	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	16638032	16638032	A	T	SNP	CCDC144A	NM_014695	human	genbank	57_37b	+1	provisional	missense	c.2447	p.D816V	1.000	NULL	NULL	-	no_errors	
CENPF	1063	genome.wustl.edu	37	1	214818057	214818057	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	214818057	214818057	T	C	SNP	CENPF	NM_016343	human	genbank	57_37b	+1	reviewed	missense	c.5144	p.V1715A	0.000	NULL	HMMPfam_Cenp-F_N,superfamily_Spectrin repeat,HMMPfam_Cenp-F_leu_zip,superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F	-	no_errors	
COL24A1	255631	genome.wustl.edu	37	1	86430711	86430711	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	86430711	86430711	G	A	SNP	COL24A1	NM_152890	human	genbank	57_37b	-1	validated	missense	c.2498	p.P833L	1.000	HMMPfam_Collagen	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors	
CYP1A2	1544	genome.wustl.edu	37	15	75047325	75047325	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	75047325	75047325	G	A	SNP	CYP1A2	NM_000761	human	genbank	57_37b	+1	reviewed	missense	c.1447	p.V483M	0.004	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors	
DNAH3	55567	genome.wustl.edu	37	16	20996971	20996971	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	20996971	20996971	C	T	SNP	DNAH3	NM_017539	human	genbank	57_37b	-1	provisional	missense	c.7093	p.D2365N	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_Prefoldin,HMMPfam_Dynein_heavy	-	no_errors	
DOCK10	55619	genome.wustl.edu	37	2	225651833	225651833	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	225651833	225651833	T	C	SNP	DOCK10	NM_014689	human	genbank	57_37b	-1	validated	missense	c.5561	p.Y1854C	0.999	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto	-	no_errors	
DSG1	1828	genome.wustl.edu	37	18	28926019	28926019	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	28926019	28926019	G	C	SNP	DSG1	NM_001942	human	genbank	57_37b	+1	reviewed	missense	c.1958	p.G653A	1.000	HMMPfam_Cadherin_C	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C,PatternScan_PHOSPHOPANTETHEINE	-	no_errors	
EGFR	1956	genome.wustl.edu	37	7	55221773	55221773	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	55221773	55221773	A	G	SNP	EGFR	NM_005228	human	genbank	57_37b	+1	reviewed	missense	c.817	p.T273A	1.000	HMMPfam_Furin-like,superfamily_Growth factor receptor domain	superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,HMMSmart_SM00261,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
ENSG00000246637	0	genome.wustl.edu	37	3	176750547	176750553	+	RNA	DEL	AATAATA	AATAATA	-	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	AATAATA	AATAATA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	176750547	176750553	AATAATA	-	DEL	ENSG00000246637	ENST00000501295	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.001:0.001:0.001	-	-	(deletion:rna[176750258,176750764])	no_errors	
ERBB4	2066	genome.wustl.edu	37	2	212289007	212289007	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	212289007	212289007	C	T	SNP	ERBB4	NM_005235	human	genbank	57_37b	-1	reviewed	silent	c.2739	p.L913	0.998	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMSmart_SM00261,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_YLP	-	no_errors	
FNBP1	23048	genome.wustl.edu	37	9	132662786	132662786	+	Missense_Mutation	SNP	C	C	T	rs1023000	byCluster;byFrequency;by1000genomes	TCGA-AO-A12G-01	TCGA-AO-A12G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	132662786	132662786	C	T	SNP	FNBP1	NM_015033	human	genbank	57_37b	-1	reviewed	missense	c.1469	p.S490N	0.000	NULL	HMMPfam_FCH,HMMSmart_SM00055,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-		
FOXM1	2305	genome.wustl.edu	37	12	2968169	2968169	+	Missense_Mutation	SNP	A	A	G	rs3742076	byCluster;byFrequency;by1000genomes	TCGA-AO-A12G-01	TCGA-AO-A12G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	2968169	2968169	A	G	SNP	FOXM1	NM_202002	human	genbank	57_37b	-1	validated	missense	c.2041	p.S681P	0.970	NULL	"HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-		
GLI3	2737	genome.wustl.edu	37	7	42084998	42084998	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	42084998	42084998	G	A	SNP	GLI3	NM_000168	human	genbank	57_37b	-1	reviewed	missense	c.811	p.L271F	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
GLI3	2737	genome.wustl.edu	37	7	42085091	42085091	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	42085091	42085091	G	A	SNP	GLI3	NM_000168	human	genbank	57_37b	-1	reviewed	nonsense	c.718	p.Q240*	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors	
KIAA0430	9665	genome.wustl.edu	37	16	15718667	15718667	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	15718667	15718667	C	T	SNP	KIAA0430	NM_014647	human	genbank	57_37b	-1	validated	silent	c.2229	p.R743	1.000	NULL	HMMPfam_DUF537,superfamily_RNA-binding domain RBD,HMMSmart_SM00360	-	no_errors	
KIAA1045	23349	genome.wustl.edu	37	9	34978067	34978067	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34978067	34978067	C	T	SNP	KIAA1045	NM_015297	human	genbank	57_37b	+1	validated	missense	c.1162	p.R388C	1.000	NULL	PatternScan_ZF_PHD_1	-	no_errors	
KIAA1432	57589	genome.wustl.edu	37	9	5773058	5773058	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	5773058	5773058	G	A	SNP	KIAA1432	NM_020829	human	genbank	57_37b	+1	validated	missense	c.3724	p.D1242N	1.000	NULL	superfamily_Amine_DH_B_like,HMMPfam_RIC1	-	no_errors	
KIAA1432	57589	genome.wustl.edu	37	9	5774097	5774097	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	5774097	5774097	G	C	SNP	KIAA1432	NM_020829	human	genbank	57_37b	+1	validated	missense	c.3886	p.E1296Q	1.000	NULL	HMMPfam_RIC1,superfamily_Amine_DH_B_like	-	no_errors	
KIF2B	84643	genome.wustl.edu	37	17	51900732	51900732	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	51900732	51900732	C	T	SNP	KIF2B	NM_032559	human	genbank	57_37b	+1	validated	missense	c.338	p.T113M	0.003	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors	
LAMA5	3911	genome.wustl.edu	37	20	60910124	60910124	+	Missense_Mutation	SNP	T	T	G	rs79319629	byCluster;byFrequency;by1000genomes	TCGA-AO-A12G-01	TCGA-AO-A12G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60910124	60910124	T	G	SNP	LAMA5	NM_005560	human	genbank	57_37b	-1	reviewed	missense	c.2435	p.K812T	1.000	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-		
LOC100130599	0	genome.wustl.edu	37	21	46119544	46119544	+	Missense_Mutation	SNP	G	A	A	rs8133918	byCluster;by2Hit2Allele;by1000genomes	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46119544	46119544	G	A	SNP	LOC100130599	XM_002343756	human	genbank	57_37b	+1	model	missense	c.358	p.A120T	0.000	NULL	HMMPfam_Keratin_B2	-		
LOC100134663	0	genome.wustl.edu	37	7	45107868	45107868	+	Missense_Mutation	SNP	A	G	G	rs7788412	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AO-A12G-01	TCGA-AO-A12G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	45107868	45107868	A	G	SNP	LOC100134663	XM_001718823	human	genbank	57_37b	-1	model	missense	c.1094	p.I365T	0.000	NULL	NULL	-		
LOC643677	643677	genome.wustl.edu	37	13	103386196	103386196	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	103386196	103386196	C	T	SNP	LOC643677	XM_002344085	human	genbank	57_37b	-1	model	silent	c.16395	p.V5465	0.000	NULL	NULL	-	no_errors	
MTAP	4507	genome.wustl.edu	37	9	21818104	21818104	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	21818104	21818104	G	A	SNP	MTAP	NM_002451	human	genbank	57_37b	+1	reviewed	missense	c.250	p.E84K	1.000	superfamily_Purine and uridine phosphorylases,HMMPfam_PNP_UDP_1,PatternScan_PNP_MTAP_2	superfamily_Purine and uridine phosphorylases,HMMPfam_PNP_UDP_1,PatternScan_PNP_MTAP_2	-	no_errors	
MTOR	2475	genome.wustl.edu	37	1	11317205	11317205	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11317205	11317205	C	A	SNP	MTOR	NM_004958	human	genbank	57_37b	-1	reviewed	nonsense	c.289	p.E97*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_SSF48452,HMMPfam_FAT,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors	
NECAB1	64168	genome.wustl.edu	37	8	91937790	91937790	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	91937790	91937790	G	A	SNP	NECAB1	NM_022351	human	genbank	57_37b	+1	validated	silent	c.522	p.L174	0.998	NULL	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Dimeric alpha beta barrel,HMMPfam_ABM	-	no_errors	
OR1L4	254973	genome.wustl.edu	37	9	125486770	125486770	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	125486770	125486770	T	C	SNP	OR1L4	NM_001005235	human	genbank	57_37b	+1	provisional	missense	c.502	p.S168P	0.972	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors	
PCDH15	65217	genome.wustl.edu	37	10	55600150	55600151	+	In_Frame_Ins	INS	-	-	GGTGTA	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	55600150	55600151	-	GGTGTA	INS	PCDH15	NM_001142763	human	genbank	57_37b	-1	reviewed	in_frame_ins	c.3928_3927	p.1309in_frame_insYT	1.000:1.000	NULL	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like,HMMPfam_Cadherin	-	no_errors	
PCDHA11	56138	genome.wustl.edu	37	5	140250745	140250745	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140250745	140250745	C	T	SNP	PCDHA11	NM_018902	human	genbank	57_37b	+1	reviewed	missense	c.2057	p.A686V	0.000	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PLCD3	113026	genome.wustl.edu	37	17	43192821	43192821	+	Silent	SNP	A	A	G	rs713101	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-AO-A12G-01	TCGA-AO-A12G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	43192821	43192821	A	G	SNP	PLCD3	ENST00000322765	human	ensembl	57_37b	-1	known	silent	c.1450	p.L484	0.996	superfamily_PLC-like phosphodiesterases	superfamily_PH domain-like,HMMSmart_SM00233,superfamily_EF-hand,PatternScan_EF_HAND_1,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-		
PLG	5340	genome.wustl.edu	37	6	161162411	161162411	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	161162411	161162411	G	A	SNP	PLG	NM_000301	human	genbank	57_37b	+1	reviewed	missense	c.2087	p.R696Q	0.005	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	HMMPfam_PAN_1,superfamily_SSF57414,HMMSmart_PAN_AP,superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors	
PLXNA4	91584	genome.wustl.edu	37	7	132192324	132192324	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	132192324	132192324	C	T	SNP	PLXNA4	NM_020911	human	genbank	57_37b	-1	validated	missense	c.1129	p.G377S	1.000	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-	no_errors	
PTEN	5728	genome.wustl.edu	37	10	89653842	89653842	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89653842	89653842	G	-	DEL	PTEN	ENST00000371953	human	ensembl	57_37b	+1	known	frame_shift_del	c.140	p.N48fs	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	(deletion:cds_exon[89653782,89653866])	no_errors	
RIMS4	140730	genome.wustl.edu	37	20	43384877	43384877	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	43384877	43384877	G	T	SNP	RIMS4	NM_182970	human	genbank	57_37b	-1	validated	missense	c.708	p.F236L	1.000	superfamily_C2_CaLB	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
SAPS1	22870	genome.wustl.edu	37	19	55756980	55756980	+	Silent	SNP	A	A	G	rs3745920	byCluster;byFrequency;by1000genomes	TCGA-AO-A12G-01	TCGA-AO-A12G-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55756980	55756980	A	G	SNP	SAPS1	NM_014931	human	genbank	57_37b	-1	validated	silent	c.294	p.A98	0.003	NULL	HMMPfam_SAPS	-		
TP53	7157	genome.wustl.edu	37	17	7578505	7578516	+	In_Frame_Del	DEL	GGGCAGGTCTTG	GGGCAGGTCTTG	-	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	GGGCAGGTCTTG	GGGCAGGTCTTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578505	7578516	GGGCAGGTCTTG	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	in_frame_del	c.425_414	p.KTCP139in_frame_del	0.998:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.924	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7578371,7578554])	no_errors	
TREML3	340206	genome.wustl.edu	37	6	41185440	41185440	+	RNA	SNP	G	G	A	rs61738673	byCluster;byFrequency;by1000genomes	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41185440	41185440	G	A	SNP	TREML3	NR_027256	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.002	-	-	-		
WDR60	55112	genome.wustl.edu	37	7	158716295	158716295	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	158716295	158716295	T	C	SNP	WDR60	NM_018051	human	genbank	57_37b	+1	validated	missense	c.2128	p.F710L	0.978	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors	
ZNF131	7690	genome.wustl.edu	37	5	43161509	43161509	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	43161509	43161509	T	C	SNP	ZNF131	NM_003432	human	genbank	57_37b	+1	validated	missense	c.530	p.I177T	1.000	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667,HMMPfam_zf-C2H2	-	no_errors	
ZNF329	79673	genome.wustl.edu	37	19	58639594	58639594	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58639594	58639594	G	A	SNP	ZNF329	NM_024620	human	genbank	57_37b	-1	validated	missense	c.1277	p.P426L	1.000	superfamily_SSF57667	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF705G	100131980	genome.wustl.edu	37	8	7217220	7217220	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A12G-01	TCGA-AO-A12G-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	7217220	7217220	C	A	SNP	ZNF705G	ENST00000400156	human	ensembl	57_37b	-1	known	missense	c.239	p.R80M	0.890	NULL	HMMPfam_KRAB,superfamily_Krueppel-associated_box,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
