Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AMIGO1	57463	genome.wustl.edu	37	1	110050505	110050505	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	110050505	110050505	T	C	SNP	AMIGO1	NM_020703	human	genbank	57_37b	-1	validated	missense	c.1030	p.M344V	0.972	superfamily_SSF48726,HMMSmart_IG	superfamily_SSF52058,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors	
ARHGAP21	57584	genome.wustl.edu	37	10	24908483	24908483	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	24908483	24908483	C	A	SNP	ARHGAP21	NM_020824	human	genbank	57_37b	-1	validated	missense	c.2341	p.V781F	1.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
BNC2	54796	genome.wustl.edu	37	9	16419369	16419369	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	16419369	16419369	C	T	SNP	BNC2	NM_017637	human	genbank	57_37b	-1	validated	missense	c.2918	p.S973N	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
C17orf71	55181	genome.wustl.edu	37	17	57289786	57289786	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	57289786	57289786	G	A	SNP	C17orf71	NM_018149	human	genbank	57_37b	+1	validated	missense	c.1844	p.R615K	1.000	HMMPfam_DUF2146	HMMPfam_DUF2146	-	no_errors	
C19orf63	284361	genome.wustl.edu	37	19	50983986	50983986	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50983986	50983986	C	T	SNP	C19orf63	NM_206538	human	genbank	57_37b	+1	validated	missense	c.551	p.S184L	0.830	NULL	NULL	-	no_errors	
C1orf152	767846	genome.wustl.edu	37	1	144612558	144612558	+	RNA	SNP	T	T	C	rs12093282	by2Hit2Allele	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	144612558	144612558	T	C	SNP	C1orf152	NR_003242	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.355	-	-	-		
CALHM3	119395	genome.wustl.edu	37	10	105233253	105233253	+	Missense_Mutation	SNP	C	C	T	rs116250606	by1000genomes	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	105233253	105233253	C	T	SNP	CALHM3	NM_001129742	human	genbank	57_37b	-1	validated	missense	c.752	p.R251Q	0.865	NULL	NULL	-		
DDX60L	91351	genome.wustl.edu	37	4	169379152	169379152	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	169379152	169379152	G	C	SNP	DDX60L	NM_001012967	human	genbank	57_37b	-1	validated	missense	c.614	p.T205R	0.000	NULL	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
ENSG00000173213	0	genome.wustl.edu	37	18	49147	49147	+	Missense_Mutation	SNP	G	G	A	rs4413042	byCluster;by2Hit2Allele;byHapMap	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	49147	49147	G	A	SNP	ENSG00000173213	ENST00000308911	human	ensembl	57_37b	-1	known	missense	c.148	p.H50Y	1.000	superfamily_Tubulin_FtsZ,HMMPfam_Tubulin	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C	-		
ENSG00000205046	0	genome.wustl.edu	37	11	51458948	51458948	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	51458948	51458948	A	G	SNP	ENSG00000205046	ENST00000378440	human	ensembl	57_37b	-1	known	silent	c.666	p.S222	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
ENSG00000221452	0	genome.wustl.edu	37	3	197846843	197846843	+	RNA	SNP	A	A	G	rs71634628	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	197846843	197846843	A	G	SNP	ENSG00000221452	ENST00000408525	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.998	-	-	-		
EXOC1	55763	genome.wustl.edu	37	4	56765860	56765860	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	56765860	56765860	T	G	SNP	EXOC1	NM_001024924	human	genbank	57_37b	+1	reviewed	missense	c.2147	p.V716G	1.000	HMMPfam_Sec3	HMMPfam_Sec3	-	no_errors	
FAM173B	134145	genome.wustl.edu	37	5	10227578	10227578	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	10227578	10227578	T	C	SNP	FAM173B	NM_199133	human	genbank	57_37b	-1	validated	missense	c.677	p.H226R	0.000	NULL	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors	
GALNS	2588	genome.wustl.edu	37	16	88880888	88880888	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	88880888	88880888	G	T	SNP	GALNS	NM_000512	human	genbank	57_37b	-1	reviewed	missense	c.1528	p.P510T	0.528	superfamily_Alkaline_phosphatase_core	superfamily_Alkaline_phosphatase_core,HMMPfam_Sulfatase,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors	
GPR112	139378	genome.wustl.edu	37	X	135445680	135445680	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135445680	135445680	A	T	SNP	GPR112	NM_153834	human	genbank	57_37b	+1	validated	missense	c.7322	p.K2441M	0.001	NULL	superfamily_ConA_like_lec_gl,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
GPR19	2842	genome.wustl.edu	37	12	12815194	12815194	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	12815194	12815194	C	T	SNP	GPR19	NM_006143	human	genbank	57_37b	-1	validated	silent	c.189	p.G63	0.977	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors	
GUCA1A	2978	genome.wustl.edu	37	6	42147050	42147050	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42147050	42147050	G	A	SNP	GUCA1A	NM_000409	human	genbank	57_37b	+1	reviewed	missense	c.515	p.R172Q	0.215	NULL	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
HOXB6	3216	genome.wustl.edu	37	17	46675234	46675234	+	Silent	SNP	G	G	A	rs35227248	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	46675234	46675234	G	A	SNP	HOXB6	NM_018952	human	genbank	57_37b	-1	reviewed	silent	c.279	p.A93	0.985	NULL	PatternScan_ANTENNAPEDIA,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-		
INSL6	11172	genome.wustl.edu	37	9	5185597	5185597	+	Silent	SNP	C	C	T	rs115207805	by1000genomes	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	5185597	5185597	C	T	SNP	INSL6	NM_007179	human	genbank	57_37b	-1	reviewed	silent	c.6	p.P2	0.000	NULL	superfamily_Insulin-like,HMMPfam_Insulin,HMMSmart_IlGF,PatternScan_INSULIN	-		
JAG2	3714	genome.wustl.edu	37	14	105617042	105617042	+	Missense_Mutation	SNP	C	T	T	rs1057744	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105617042	105617042	C	T	SNP	JAG2	NM_002226	human	genbank	57_37b	-1	reviewed	missense	c.1501	p.E501K	0.017	superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181	HMMPfam_MNNL,HMMPfam_DSL,HMMSmart_SM00051,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMPfam_EGF_CA,HMMSmart_SM00215,HMMSmart_SM00214	-		
KCNB2	9312	genome.wustl.edu	37	8	73850130	73850131	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	73850130	73850131	AA	-	DEL	KCNB2	NM_004770	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2540_2541	p.E847fs	1.000:1.000	NULL	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Kv2channel	(deletion:cds_exon[73848170,73850326])	no_errors	
KCNB2	9312	genome.wustl.edu	37	8	73850133	73850137	+	Frame_Shift_Del	DEL	AGGGC	AGGGC	-	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	AGGGC	AGGGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	73850133	73850137	AGGGC	-	DEL	KCNB2	NM_004770	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2543_2547	p.G849fs	1.000:1.000:0.996:0.990:0.084	NULL	HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Kv2channel,HMMPfam_Ion_trans,superfamily_BTB/POZ_fold,superfamily_SSF81324	(deletion:cds_exon[73848170,73850326])	no_errors	
KIAA0196	9897	genome.wustl.edu	37	8	126073396	126073396	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	126073396	126073396	T	G	SNP	KIAA0196	NM_014846	human	genbank	57_37b	-1	reviewed	silent	c.1449	p.I483	0.021	HMMPfam_Strumpellin	HMMPfam_Strumpellin	-	no_errors	
KPNA1	3836	genome.wustl.edu	37	3	122146488	122146488	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122146488	122146488	A	T	SNP	KPNA1	NM_002264	human	genbank	57_37b	-1	reviewed	silent	c.1326	p.V442	1.000	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	HMMPfam_IBB,superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors	
LOC100288784	0	genome.wustl.edu	37	21	9927138	9927138	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	9927138	9927138	G	T	SNP	LOC100288784	XM_002343734	human	genbank	57_37b	+1	model	missense	c.118	p.A40S	0.010	NULL	NULL	-	no_errors	
LOC100292070	0	genome.wustl.edu	37	17	7412572	7412572	+	Missense_Mutation	SNP	T	T	C	rs56034369	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7412572	7412572	T	C	SNP	LOC100292070	XM_002344988	human	genbank	57_37b	+1	model	missense	c.283	p.S95P	0.001	NULL	NULL	-		
LOC729992	729992	genome.wustl.edu	37	2	12164456	12164456	+	RNA	SNP	C	C	T	rs13002221	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	12164456	12164456	C	T	SNP	LOC729992	XR_038318	human	genbank	57_37b	+1	model	rna	NULL	NULL	1.000	-	-	-		
LRTM1	57408	genome.wustl.edu	37	3	54959105	54959105	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	54959105	54959105	G	A	SNP	LRTM1	NM_020678	human	genbank	57_37b	-1	provisional	missense	c.145	p.P49S	1.000	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082	-	no_errors	
ME2	4200	genome.wustl.edu	37	18	48447486	48447486	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	48447486	48447486	G	C	SNP	ME2	NM_002396	human	genbank	57_37b	+1	reviewed	missense	c.985	p.E329Q	1.000	HMMPfam_Malic_M,superfamily_NAD(P)-bd	superfamily_SSF53223,HMMPfam_malic,PatternScan_MALIC_ENZYMES,HMMPfam_Malic_M,superfamily_NAD(P)-bd	-	no_errors	
MRPL54	116541	genome.wustl.edu	37	19	3765204	3765204	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3765204	3765204	C	T	SNP	MRPL54	NM_172251	human	genbank	57_37b	+1	reviewed	silent	c.159	p.S53	0.000	NULL	HMMPfam_Ribosomal_L37	-	no_errors	
N4BP1	9683	genome.wustl.edu	37	16	48595370	48595370	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	48595370	48595370	C	G	SNP	N4BP1	NM_153029	human	genbank	57_37b	-1	validated	missense	c.1184	p.R395T	0.383	NULL	NULL	-	no_errors	
NBEA	26960	genome.wustl.edu	37	13	35733981	35733982	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	35733981	35733982	TT	-	DEL	NBEA	NM_015678	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.3673_3674	p.L1225fs	0.622:0.620	superfamily_ARM repeat	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	(deletion:cds_exon[35733153,35734169])	no_errors	
NCOR1	9611	genome.wustl.edu	37	17	16075115	16075115	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	16075115	16075115	A	G	SNP	NCOR1	NM_006311	human	genbank	57_37b	-1	reviewed	splice_site	c.435+2	e3+2	1.000	-	-	-	no_errors	
NIPAL4	348938	genome.wustl.edu	37	5	156899386	156899386	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	156899386	156899386	C	T	SNP	NIPAL4	NM_001099287	human	genbank	57_37b	+1	reviewed	silent	c.819	p.L273	1.000	HMMPfam_DUF803	HMMPfam_DUF803,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors	
NLRP13	126204	genome.wustl.edu	37	19	56423854	56423854	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56423854	56423854	G	A	SNP	NLRP13	NM_176810	human	genbank	57_37b	-1	validated	silent	c.1329	p.Y443	0.000	NULL	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047,HMMPfam_LRR_1	-	no_errors	
NPAS3	64067	genome.wustl.edu	37	14	34243738	34243738	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	34243738	34243738	T	C	SNP	NPAS3	NM_173159	human	genbank	57_37b	+1	reviewed	splice_site	c.1007+2	e8+2	1.000	-	-	-	no_errors	
OR2A42	402317	genome.wustl.edu	37	7	143929644	143929644	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	143929644	143929644	G	A	SNP	OR2A42	NM_001001802	human	genbank	57_37b	-1	provisional	missense	c.275	p.T92M	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR2G3	81469	genome.wustl.edu	37	1	247769184	247769184	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247769184	247769184	G	A	SNP	OR2G3	NM_001001914	human	genbank	57_37b	+1	provisional	silent	c.297	p.A99	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCDHA10	56139	genome.wustl.edu	37	5	140237004	140237004	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140237004	140237004	C	T	SNP	PCDHA10	NM_018901	human	genbank	57_37b	+1	reviewed	silent	c.1371	p.S457	0.009	superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PCDHGA2	56113	genome.wustl.edu	37	5	140720475	140720475	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140720475	140720475	T	A	SNP	PCDHGA2	NM_018915	human	genbank	57_37b	+1	reviewed	missense	c.1937	p.I646N	0.795	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMSmart_SM00112,superfamily_Cadherin-like,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PDE6A	5145	genome.wustl.edu	37	5	149265830	149265830	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	149265830	149265830	C	G	SNP	PDE6A	NM_000440	human	genbank	57_37b	-1	reviewed	missense	c.1836	p.M612I	1.000	superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I	superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors	
PER1	5187	genome.wustl.edu	37	17	8050807	8050807	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8050807	8050807	A	G	SNP	PER1	NM_002616	human	genbank	57_37b	-1	reviewed	missense	c.1478	p.I493T	1.000	NULL	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3	-	no_errors	
PKP4	8502	genome.wustl.edu	37	2	159514765	159514765	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	159514765	159514765	G	A	SNP	PKP4	NM_003628	human	genbank	57_37b	+1	reviewed	missense	c.2032	p.D678N	1.000	superfamily_ARM repeat,HMMSmart_SM00185	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors	
PLXNA3	55558	genome.wustl.edu	37	X	153696287	153696287	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153696287	153696287	C	A	SNP	PLXNA3	NM_017514	human	genbank	57_37b	+1	validated	missense	c.3763	p.R1255S	1.000	NULL	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP	-	no_errors	
PRIC285	85441	genome.wustl.edu	37	20	62195087	62195087	+	Silent	SNP	A	A	G	rs310630	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62195087	62195087	A	G	SNP	PRIC285	NM_001037335	human	genbank	57_37b	-1	reviewed	silent	c.5088	p.S1696	0.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_RNB,PatternScan_RIBONUCLEASE_II	-		
RORC	6097	genome.wustl.edu	37	1	151804201	151804201	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151804201	151804201	C	T	SNP	RORC	NM_005060	human	genbank	57_37b	-1	reviewed	missense	c.40	p.E14K	0.999	NULL	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors	
RREB1	6239	genome.wustl.edu	37	6	7246998	7246998	+	Missense_Mutation	SNP	G	G	A	rs2281833	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	7246998	7246998	G	A	SNP	RREB1	NM_001003699	human	genbank	57_37b	+1	reviewed	missense	c.4315	p.G1439R	0.000	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-		
RYR2	6262	genome.wustl.edu	37	1	237947265	237947265	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237947265	237947265	A	C	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	missense	c.12253	p.K4085Q	0.999	superfamily_EF-hand	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SFRP1	6422	genome.wustl.edu	37	8	41166417	41166417	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41166417	41166417	C	T	SNP	SFRP1	NM_003012	human	genbank	57_37b	-1	reviewed	missense	c.262	p.A88T	1.000	HMMPfam_Fz,superfamily_Frizzled_Cys-rich,HMMSmart_FRI	HMMPfam_Fz,superfamily_Frizzled_Cys-rich,HMMSmart_FRI,superfamily_TIMP_like,HMMSmart_C345C,HMMPfam_NTR	-	no_errors	
SFRS4	6429	genome.wustl.edu	37	1	29481326	29481326	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	29481326	29481326	T	C	SNP	SFRS4	NM_005626	human	genbank	57_37b	-1	reviewed	missense	c.460	p.K154E	1.000	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1	-	no_errors	
SLC35F2	54733	genome.wustl.edu	37	11	107663404	107663404	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	107663404	107663404	C	-	DEL	SLC35F2	NM_017515	human	genbank	57_37b	-1	validated	frame_shift_del	c.1062	p.I355fs	0.003	HMMPfam_DUF914	HMMPfam_DUF914,superfamily_Multidrug resistance efflux transporter EmrE	(deletion:cds_exon[107663341,107663526])	no_errors	
TBC1D8B	54885	genome.wustl.edu	37	X	106069286	106069286	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	106069286	106069286	A	T	SNP	TBC1D8B	NM_017752	human	genbank	57_37b	+1	validated	missense	c.854	p.E285V	1.000	HMMPfam_GRAM,HMMSmart_SM00568	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164,superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors	
TIMP2	7077	genome.wustl.edu	37	17	76851797	76851797	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	76851797	76851797	G	A	SNP	TIMP2	NM_003255	human	genbank	57_37b	-1	reviewed	silent	c.615	p.R205	0.979	superfamily_TIMP_like	HMMPfam_TIMP,PatternScan_TIMP,HMMSmart_NTR,superfamily_TIMP_like	-	no_errors	
TRIM63	84676	genome.wustl.edu	37	1	26393958	26393958	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	26393958	26393958	C	T	SNP	TRIM63	NM_032588	human	genbank	57_37b	-1	reviewed	missense	c.28	p.D10N	1.000	superfamily_SSF57850	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX	-	no_errors	
WNK4	65266	genome.wustl.edu	37	17	40939855	40939855	+	Missense_Mutation	SNP	G	G	T	rs55781437	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40939855	40939855	G	T	SNP	WNK4	NM_032387	human	genbank	57_37b	+1	reviewed	missense	c.1801	p.A601S	1.000	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-		
WNT11	7481	genome.wustl.edu	37	11	75902837	75902837	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	75902837	75902837	G	A	SNP	WNT11	NM_004626	human	genbank	57_37b	-1	reviewed	missense	c.661	p.R221C	1.000	HMMPfam_wnt,HMMSmart_WNT1	HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1	-	no_errors	
ZC3H7A	29066	genome.wustl.edu	37	16	11856531	11856531	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	11856531	11856531	G	A	SNP	ZC3H7A	NM_014153	human	genbank	57_37b	-1	provisional	missense	c.2075	p.A692V	1.000	NULL	superfamily_TPR-like,superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF517	340385	genome.wustl.edu	37	8	146032589	146032589	+	Silent	SNP	G	G	A	rs78195432	byCluster;byFrequency;by1000genomes	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	146032589	146032589	G	A	SNP	ZNF517	NM_213605	human	genbank	57_37b	+1	validated	silent	c.288	p.E96	0.007	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1	-		
ZSCAN12	9753	genome.wustl.edu	37	6	28358993	28358993	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A0TT-01	TCGA-AR-A0TT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	28358993	28358993	A	C	SNP	ZSCAN12	ENST00000361028	human	ensembl	57_37b	-1	known	nonsense	c.1074	p.Y358*	0.901	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
