Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ATF3	467	genome.wustl.edu	37	1	212792849	212792849	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	212792849	212792849	G	C	SNP	ATF3	NM_001030287	human	genbank	57_37b	+1	reviewed	missense	c.498	p.E166D	1.000	NULL	superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_2,HMMSmart_SM00338,PatternScan_BZIP_BASIC	-	no_errors	
ATP4A	495	genome.wustl.edu	37	19	36054519	36054519	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36054519	36054519	C	T	SNP	ATP4A	NM_000704	human	genbank	57_37b	-1	reviewed	splice_site	c.12+1	e1+1	0.989	-	-	-	no_errors	
BCORL1	63035	genome.wustl.edu	37	X	129189983	129189983	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	129189983	129189983	G	A	SNP	BCORL1	NM_021946	human	genbank	57_37b	+1	validated	missense	c.5008	p.E1670K	0.999	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors	
CCDC24	149473	genome.wustl.edu	37	1	44458238	44458238	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	44458238	44458238	C	T	SNP	CCDC24	NM_152499	human	genbank	57_37b	+1	provisional	missense	c.346	p.H116Y	0.998	NULL	NULL	-	no_errors	
CHPF	79586	genome.wustl.edu	37	2	220406722	220406722	+	Silent	SNP	T	C	C	rs3731912	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220406722	220406722	T	C	SNP	CHPF	NM_024536	human	genbank	57_37b	-1	validated	silent	c.504	p.L168	1.000	NULL	HMMPfam_CHGN	-		
COL24A1	255631	genome.wustl.edu	37	1	86591291	86591291	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	86591291	86591291	C	T	SNP	COL24A1	NM_152890	human	genbank	57_37b	-1	validated	missense	c.728	p.R243H	0.069	superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors	
DNAJC1	64215	genome.wustl.edu	37	10	22217445	22217445	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	22217445	22217445	G	A	SNP	DNAJC1	NM_022365	human	genbank	57_37b	-1	provisional	nonsense	c.361	p.R121*	1.000	superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ,PatternScan_DNAJ_1	superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ,PatternScan_DNAJ_1,HMMSmart_SANT,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain_like	-	no_errors	
GRM6	2916	genome.wustl.edu	37	5	178415975	178415975	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	178415975	178415975	G	A	SNP	GRM6	NM_000843	human	genbank	57_37b	-1	reviewed	missense	c.1315	p.R439W	1.000	superfamily_SSF53822,HMMPfam_ANF_receptor	superfamily_SSF53822,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors	
HCFC1	3054	genome.wustl.edu	37	X	153219074	153219074	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153219074	153219074	G	A	SNP	HCFC1	NM_005334	human	genbank	57_37b	-1	reviewed	missense	c.4481	p.P1494L	0.996	NULL	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
HCN1	348980	genome.wustl.edu	37	5	45262056	45262056	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	45262056	45262056	G	A	SNP	HCN1	NM_021072	human	genbank	57_37b	-1	validated	silent	c.2640	p.D880	0.746	NULL	PatternScan_CNMP_BINDING_2,HMMPfam_Ion_trans_N,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1	-	no_errors	
KIF26A	26153	genome.wustl.edu	37	14	104643409	104643409	+	Silent	SNP	A	A	G	rs2487303	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	104643409	104643409	A	G	SNP	KIF26A	NM_015656	human	genbank	57_37b	+1	validated	silent	c.4284	p.A1428	0.000	NULL	PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin	-		
LOC100130481	0	genome.wustl.edu	37	3	190433597	190433597	+	RNA	SNP	G	G	A	rs9841126	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	190433597	190433597	G	A	SNP	LOC100130481	XR_078293	human	genbank	57_37b	+1	model	rna	NULL	NULL	1.000	-	-	-		
LOC100289349	0	genome.wustl.edu	37	8	33380685	33380685	+	Missense_Mutation	SNP	T	C	C	rs7836942	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	33380685	33380685	T	C	SNP	LOC100289349	XM_002342830	human	genbank	57_37b	+1	model	missense	c.2	p.M1T	0.007	NULL	HMMPfam_Thymosin,HMMSmart_SM00152,superfamily_Ribosomal protein L10e	-		
LOC340096	340096	genome.wustl.edu	37	5	17491659	17491659	+	Silent	SNP	A	G	G	rs2459842	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	17491659	17491659	A	G	SNP	LOC340096	XM_293943	human	genbank	57_37b	-1	model	silent	c.219	p.R73	0.991	superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2	superfamily_Histone-fold,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2	-		
LOC348840	348840	genome.wustl.edu	37	3	197807195	197807195	+	RNA	SNP	G	A	A	rs9812611	byCluster;by1000genomes	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	197807195	197807195	G	A	SNP	LOC348840	NR_003291	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.001	-	-	-		
MAGEB16	139604	genome.wustl.edu	37	X	35820757	35820757	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	35820757	35820757	G	A	SNP	MAGEB16	NM_001099921	human	genbank	57_37b	+1	provisional	silent	c.444	p.E148	0.000	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors	
MAGEE2	139599	genome.wustl.edu	37	X	75004102	75004102	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	75004102	75004102	G	C	SNP	MAGEE2	NM_138703	human	genbank	57_37b	-1	validated	missense	c.785	p.T262R	0.977	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors	
MPDZ	8777	genome.wustl.edu	37	9	13224396	13224396	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	13224396	13224396	G	C	SNP	MPDZ	NM_003829	human	genbank	57_37b	-1	validated	missense	c.370	p.Q124E	1.000	superfamily_PDZ domain-like	HMMPfam_L27_2,superfamily_L27 domain,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
OR2A1	346528	genome.wustl.edu	37	7	144015463	144015463	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	144015463	144015463	G	A	SNP	OR2A1	NM_001005287	human	genbank	57_37b	+1	provisional	silent	c.246	p.A82	0.002	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
POU2F3	25833	genome.wustl.edu	37	11	120180259	120180259	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	120180259	120180259	C	T	SNP	POU2F3	NM_014352	human	genbank	57_37b	+1	validated	silent	c.1032	p.A344	0.731	NULL	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
PPAN-P2RY11	692312	genome.wustl.edu	37	19	10221623	10221623	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10221623	10221623	C	G	SNP	PPAN-P2RY11	NM_001040664	human	genbank	57_37b	+1	validated	missense	c.1204	p.L402V	0.996	NULL	HMMPfam_Brix,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PRCP	5547	genome.wustl.edu	37	11	82561013	82561013	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	82561013	82561013	G	A	SNP	PRCP	NM_199418	human	genbank	57_37b	-1	reviewed	missense	c.757	p.H253Y	0.001	HMMPfam_Peptidase_S28	HMMPfam_Peptidase_S28,superfamily_SSF53474	-	no_errors	
RUNX1	861	genome.wustl.edu	37	21	36252880	36252880	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	36252880	36252880	A	G	SNP	RUNX1	NM_001754	human	genbank	57_37b	-1	reviewed	missense	c.482	p.L161P	1.000	HMMPfam_Runt,superfamily_p53-like transcription factors	HMMPfam_Runt,superfamily_p53-like transcription factors,HMMPfam_RunxI	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7579359	7579359	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7579359	7579359	G	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.328	p.R110fs	0.028	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7579312,7579590])	no_errors	
TSHZ3	57616	genome.wustl.edu	37	19	31770592	31770592	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	31770592	31770592	G	A	SNP	TSHZ3	NM_020856	human	genbank	57_37b	-1	validated	missense	c.107	p.T36M	0.005	NULL	PatternScan_HOMEOBOX_1,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors	
TSR2	90121	genome.wustl.edu	37	X	54470525	54470525	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	54470525	54470525	C	G	SNP	TSR2	NM_058163	human	genbank	57_37b	+1	provisional	missense	c.349	p.Q117E	0.993	NULL	HMMPfam_WGG	-	no_errors	
UBXN11	91544	genome.wustl.edu	37	1	26608896	26608896	+	Missense_Mutation	SNP	C	C	G	rs72872911	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	26608896	26608896	C	G	SNP	UBXN11	NM_183008	human	genbank	57_37b	-1	reviewed	missense	c.1457	p.C486S	0.000	NULL	superfamily_NSFL1 (p97 ATPase) cofactor p47 SEP domain,HMMPfam_SEP,superfamily_Ubiquitin-like,HMMPfam_UBX	-		
UNC13A	23025	genome.wustl.edu	37	19	17760329	17760329	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17760329	17760329	C	T	SNP	UNC13A	NM_001080421	human	genbank	57_37b	-1	validated	missense	c.1771	p.V591M	1.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-	no_errors	
WWP2	11060	genome.wustl.edu	37	16	69832690	69832690	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AN-01	TCGA-AR-A1AN-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	69832690	69832690	G	A	SNP	WWP2	NM_007014	human	genbank	57_37b	+1	reviewed	missense	c.176	p.R59H	1.000	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors	
