Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA13	154664	genome.wustl.edu	37	7	48285485	48285485	+	Nonsense_Mutation	SNP	C	C	T	rs1880738	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	48285485	48285485	C	T	SNP	ABCA13	ENST00000319379	human	ensembl	57_37b	+1	known	nonsense	c.1354	p.R452*	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-		
ADCY5	111	genome.wustl.edu	37	3	123166640	123166640	+	Silent	SNP	G	G	A	rs56194151	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	123166640	123166640	G	A	SNP	ADCY5	NM_183357	human	genbank	57_37b	-1	validated	silent	c.753	p.L251	1.000	NULL	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-		
ANKRD13D	338692	genome.wustl.edu	37	11	67066581	67066581	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67066581	67066581	G	A	SNP	ANKRD13D	NM_207354	human	genbank	57_37b	+1	validated	missense	c.523	p.G175S	1.000	NULL	HMMPfam_UIM,HMMSmart_SM00726	-	no_errors	
AQP12A	375318	genome.wustl.edu	37	2	241633892	241633892	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	241633892	241633892	C	A	SNP	AQP12A	NM_198998	human	genbank	57_37b	+1	provisional	missense	c.614	p.A205D	0.698	superfamily_MIP	PatternScan_MIP,superfamily_MIP	-	no_errors	
ARHGEF17	9828	genome.wustl.edu	37	11	73020826	73020826	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	73020826	73020826	G	T	SNP	ARHGEF17	NM_014786	human	genbank	57_37b	+1	validated	silent	c.1143	p.L381	0.769	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	-	no_errors	
C14orf37	145407	genome.wustl.edu	37	14	58605863	58605863	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	58605863	58605863	C	T	SNP	C14orf37	NM_001001872	human	genbank	57_37b	-1	predicted	missense	c.214	p.E72K	0.026	NULL	NULL	-	no_errors	
C19orf2	8725	genome.wustl.edu	37	19	30505832	30505832	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	30505832	30505832	A	G	SNP	C19orf2	NM_003796	human	genbank	57_37b	+1	reviewed	silent	c.1464	p.S488	0.011	NULL	superfamily_Prefoldin,HMMPfam_Prefoldin	-	no_errors	
C20orf26	26074	genome.wustl.edu	37	20	20150064	20150064	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	20150064	20150064	G	A	SNP	C20orf26	NM_015585	human	genbank	57_37b	+1	validated	missense	c.1345	p.E449K	0.001	NULL	superfamily_Acyl-CoA N-acyltransferases (Nat),superfamily_FAD/NAD(P)-binding domain	-	no_errors	
CLIC6	54102	genome.wustl.edu	37	21	36042890	36042890	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	36042890	36042890	G	A	SNP	CLIC6	NM_053277	human	genbank	57_37b	+1	reviewed	silent	c.1203	p.E401	0.000	NULL	superfamily_Thioredoxin-like,superfamily_Glutathione S-transferase (GST) C-terminal domain	-	no_errors	
COL4A1	1282	genome.wustl.edu	37	13	110826988	110826988	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	110826988	110826988	C	T	SNP	COL4A1	NM_001845	human	genbank	57_37b	-1	reviewed	missense	c.3307	p.G1103R	1.000	HMMPfam_Collagen	HMMPfam_Collagen,superfamily_C-type lectin-like,HMMPfam_C4,HMMSmart_SM00111	-	no_errors	
CPXM2	119587	genome.wustl.edu	37	10	125650959	125650959	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	125650959	125650959	G	T	SNP	CPXM2	NM_198148	human	genbank	57_37b	-1	validated	missense	c.217	p.P73T	0.000	NULL	superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain	-	no_errors	
CROCCL1	84809	genome.wustl.edu	37	1	16945358	16945358	+	RNA	SNP	G	G	C	rs945905	byCluster;byFrequency	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16945358	16945358	G	C	SNP	CROCCL1	NR_026752	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.110	-	-	-		
CSH1	1442	genome.wustl.edu	37	17	61972940	61972940	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	61972940	61972940	G	A	SNP	CSH1	NM_022640	human	genbank	57_37b	-1	reviewed	missense	c.349	p.R117W	1.000	HMMPfam_Hormone_1,superfamily_4_helix_cytokine	HMMPfam_Hormone_1,superfamily_4_helix_cytokine,PatternScan_SOMATOTROPIN_1	-	no_errors	
DHX58	79132	genome.wustl.edu	37	17	40257115	40257115	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40257115	40257115	G	A	SNP	DHX58	NM_024119	human	genbank	57_37b	-1	validated	missense	c.1322	p.A441V	0.986	superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_DEAD,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors	
DZIP3	9666	genome.wustl.edu	37	3	108335487	108335487	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	108335487	108335487	C	G	SNP	DZIP3	NM_014648	human	genbank	57_37b	+1	validated	missense	c.358	p.Q120E	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors	
ENSG00000163386	0	genome.wustl.edu	37	1	145367178	145367178	+	Missense_Mutation	SNP	T	T	G	rs3010129	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	145367178	145367178	T	G	SNP	ENSG00000163386	ENST00000369330	human	ensembl	57_37b	+1	known	missense	c.538	p.F180V	0.000	NULL	HMMPfam_DUF1220	-		
ENSG00000222830	0	genome.wustl.edu	37	15	78209131	78209131	+	RNA	SNP	T	T	C	rs7161792	byCluster;by1000genomes	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78209131	78209131	T	C	SNP	ENSG00000222830	ENST00000410898	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.002	-	-	-		
FLG	2312	genome.wustl.edu	37	1	152285017	152285017	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152285017	152285017	C	T	SNP	FLG	NM_002016	human	genbank	57_37b	-1	reviewed	missense	c.2345	p.R782Q	0.000	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors	
GATA3	2625	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8111433	8111434	CA	-	DEL	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	(deletion:intron[8106102,8111435])	no_errors	
GLYCTK	132158	genome.wustl.edu	37	3	52326415	52326415	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52326415	52326415	G	A	SNP	GLYCTK	NM_145262	human	genbank	57_37b	+1	reviewed	missense	c.845	p.R282H	0.081	superfamily_GckA/TtuD-like	superfamily_GckA/TtuD-like,HMMPfam_MOFRL	-	no_errors	
GPR128	84873	genome.wustl.edu	37	3	100378672	100378672	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	100378672	100378672	A	G	SNP	GPR128	NM_032787	human	genbank	57_37b	+1	validated	missense	c.1964	p.N655S	0.894	HMMPfam_7tm_2	PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2	-	no_errors	
KIAA1239	57495	genome.wustl.edu	37	4	37446793	37446793	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	37446793	37446793	C	G	SNP	KIAA1239	NM_001144990	human	genbank	57_37b	+1	validated	missense	c.3183	p.I1061M	1.000	superfamily_WD40_like	superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMSmart_WD40	-	no_errors	
KIAA1324L	222223	genome.wustl.edu	37	7	86537023	86537023	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	86537023	86537023	G	A	SNP	KIAA1324L	NM_001142749	human	genbank	57_37b	-1	validated	missense	c.2521	p.P841S	1.000	superfamily_Mannose 6-phosphate receptor domain	superfamily_Growth factor receptor domain,HMMPfam_NCD3G,superfamily_Mannose 6-phosphate receptor domain	-	no_errors	
LOC100288601	0	genome.wustl.edu	37	15	30896450	30896450	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	30896450	30896450	C	T	SNP	LOC100288601	XM_002343358	human	genbank	57_37b	+1	model	missense	c.23	p.S8F	0.214	NULL	NULL	-	no_errors	
MAP4K1	11184	genome.wustl.edu	37	19	39098654	39098654	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39098654	39098654	C	T	SNP	MAP4K1	NM_007181	human	genbank	57_37b	-1	validated	missense	c.1085	p.R362Q	0.001	superfamily_Kinase_like	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,HMMSmart_CNH,HMMPfam_CNH	-	no_errors	
MED16	10025	genome.wustl.edu	37	19	880066	880066	+	Silent	SNP	G	G	A	rs34799086	byCluster;byFrequency;by1000genomes	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	880066	880066	G	A	SNP	MED16	NM_005481	human	genbank	57_37b	-1	validated	silent	c.1224	p.S408	0.761	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-		
MIR616	0	genome.wustl.edu	37	12	57913024	57913024	+	RNA	SNP	G	G	C	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57913024	57913024	G	C	SNP	MIR616	ENST00000385293	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	
MMP14	4323	genome.wustl.edu	37	14	23314527	23314527	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23314527	23314527	G	A	SNP	MMP14	NM_004995	human	genbank	57_37b	+1	reviewed	missense	c.1369	p.E457K	1.000	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120	"superfamily_PGBD-like,HMMPfam_PG_binding_1,PatternScan_CYSTEINE_SWITCH,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMSmart_SM00235,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120,PatternScan_HEMOPEXIN"	-	no_errors	
MPO	4353	genome.wustl.edu	37	17	56355208	56355208	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56355208	56355208	C	T	SNP	MPO	NM_000250	human	genbank	57_37b	-1	reviewed	missense	c.1184	p.R395H	0.005	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,PatternScan_PEROXIDASE_1	-	no_errors	
NOX3	50508	genome.wustl.edu	37	6	155761188	155761188	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	155761188	155761188	C	T	SNP	NOX3	NM_015718	human	genbank	57_37b	-1	reviewed	silent	c.570	p.S190	0.360	HMMPfam_Ferric_reduct	HMMPfam_Ferric_reduct,superfamily_Riboflavin_synthase_like_b-brl,HMMPfam_FAD_binding_8,superfamily_SSF52343,HMMPfam_NAD_binding_6	-	no_errors	
ODZ3	55714	genome.wustl.edu	37	4	183713590	183713590	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	183713590	183713590	C	T	SNP	ODZ3	NM_001080477	human	genbank	57_37b	+1	provisional	missense	c.5765	p.A1922V	1.000	NULL	HMMPfam_Ten_N,HMMPfam_EGF_2,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196,HMMSmart_EGF,superfamily_CarboxypepD_reg,superfamily_SSF101898,HMMPfam_NHL,superfamily_SSF63829,HMMPfam_RHS_repeat	-	no_errors	
PDZD7	79955	genome.wustl.edu	37	10	102777873	102777873	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	102777873	102777873	C	T	SNP	PDZD7	NM_024895	human	genbank	57_37b	-1	provisional	missense	c.1505	p.R502H	0.004	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
PRB2	653247	genome.wustl.edu	37	12	11546473	11546473	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	11546473	11546473	G	A	SNP	PRB2	NM_006248	human	genbank	57_37b	-1	validated	missense	c.539	p.P180L	0.665	NULL	NULL	-	no_errors	
RAI1	10743	genome.wustl.edu	37	17	17696987	17696987	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	17696987	17696987	C	T	SNP	RAI1	NM_030665	human	genbank	57_37b	+1	reviewed	missense	c.725	p.P242L	0.996	NULL	HMMSmart_SM00249	-	no_errors	
SAT1	6303	genome.wustl.edu	37	X	23803899	23803899	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	23803899	23803899	C	A	SNP	SAT1	NM_002970	human	genbank	57_37b	+1	reviewed	missense	c.442	p.L148M	1.000	superfamily_Acyl-CoA N-acyltransferases (Nat)	superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Acetyltransf_1	-	no_errors	
SCN7A	6332	genome.wustl.edu	37	2	167330310	167330310	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	167330310	167330310	C	G	SNP	SCN7A	NM_002976	human	genbank	57_37b	-1	validated	missense	c.442	p.E148Q	0.963	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc	-	no_errors	
SLFN11	91607	genome.wustl.edu	37	17	33689955	33689955	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33689955	33689955	C	T	SNP	SLFN11	NM_001104587	human	genbank	57_37b	-1	validated	missense	c.872	p.R291H	0.000	HMMPfam_AAA_4	HMMPfam_AAA_4,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
SNX25	83891	genome.wustl.edu	37	4	186188240	186188240	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	186188240	186188240	C	T	SNP	SNX25	NM_031953	human	genbank	57_37b	+1	validated	missense	c.530	p.A177V	1.000	NULL	HMMPfam_PXA,superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS,superfamily_PX,HMMSmart_PX,HMMPfam_PX,HMMPfam_Nexin_C	-	no_errors	
SPERT	220082	genome.wustl.edu	37	13	46287926	46287926	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	46287926	46287926	G	A	SNP	SPERT	NM_152719	human	genbank	57_37b	+1	provisional	missense	c.766	p.A256T	0.950	NULL	NULL	-	no_errors	
SSPO	23145	genome.wustl.edu	37	7	149518148	149518148	+	Missense_Mutation	SNP	A	A	G	rs10233245	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	149518148	149518148	A	G	SNP	SSPO	ENST00000378016	human	ensembl	57_37b	+1	known	missense	c.12491	p.H4164R	0.960	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00214,HMMSmart_SM00215	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,PatternScan_BPTI_KUNITZ_1,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_Galactose-binding domain-like,PatternScan_EGF_1,HMMPfam_C8,PatternScan_GLYCO_HORMONE_BETA_1,HMMPfam_TIL	-		
STX19	415117	genome.wustl.edu	37	3	93733513	93733513	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	93733513	93733513	C	T	SNP	STX19	NM_001001850	human	genbank	57_37b	-1	provisional	missense	c.601	p.E201K	1.000	superfamily_t-snare	HMMPfam_Syntaxin,superfamily_t-snare,HMMSmart_t_SNARE,HMMPfam_SNARE,PatternScan_SYNTAXIN	-	no_errors	
TG	7038	genome.wustl.edu	37	8	133882025	133882025	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	133882025	133882025	C	T	SNP	TG	NM_003235	human	genbank	57_37b	+1	reviewed	silent	c.228	p.N76	0.005	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors	
TGFBR2	7048	genome.wustl.edu	37	3	30729932	30729932	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	30729932	30729932	G	A	SNP	TGFBR2	NM_001024847	human	genbank	57_37b	+1	reviewed	missense	c.1528	p.E510K	1.000	HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_ecTbetaR2,superfamily_Snake toxin-like,HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
TMPPE	0	genome.wustl.edu	37	3	33135082	33135082	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	33135082	33135082	G	C	SNP	TMPPE	NM_001039770	human	genbank	57_37b	-1	validated	silent	c.606	p.A202	0.000	NULL	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases	-	no_errors	
TOX2	84969	genome.wustl.edu	37	20	42683009	42683009	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	42683009	42683009	A	T	SNP	TOX2	NM_001098797	human	genbank	57_37b	+1	validated	missense	c.722	p.K241M	1.000	superfamily_HMG-box	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578263	7578263	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	nonsense	c.586	p.R196*	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
ZNF37B	256112	genome.wustl.edu	37	10	43014492	43014492	+	RNA	SNP	A	A	G	rs210237	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	43014492	43014492	A	G	SNP	ZNF37B	NR_026777	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.001	-	-	-		
ZNF598	90850	genome.wustl.edu	37	16	2049849	2049849	+	Silent	SNP	T	T	C	rs12149722	byCluster;by1000genomes	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2049849	2049849	T	C	SNP	ZNF598	ENST00000431526	human	ensembl	57_37b	-1	known	silent	c.1701	p.T567	0.001	NULL	superfamily_RING/U-box,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-		
ZNF726	0	genome.wustl.edu	37	19	24115276	24115276	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A1AP-01	TCGA-AR-A1AP-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	24115276	24115276	G	T	SNP	ZNF726	ENST00000322487	human	ensembl	57_37b	+1	known	missense	c.358	p.V120L	0.007	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
