Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABHD6	57406	genome.wustl.edu	37	3	58253048	58253048	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	58253048	58253048	G	C	SNP	ABHD6	NM_020676	human	genbank	57_37b	+1	validated	missense	c.252	p.K84N	1.000	superfamily_SSF53474	superfamily_SSF53474,HMMPfam_Abhydrolase_1	-	no_errors	
BAZ1B	9031	genome.wustl.edu	37	7	72925144	72925144	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	72925144	72925144	A	T	SNP	BAZ1B	NM_032408	human	genbank	57_37b	-1	validated	missense	c.146	p.I49N	1.000	HMMPfam_WAC_Acf1_DNA_bd	HMMPfam_WAC_Acf1_DNA_bd,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
BSX	390259	genome.wustl.edu	37	11	122850010	122850010	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	122850010	122850010	G	A	SNP	BSX	NM_001098169	human	genbank	57_37b	-1	validated	nonsense	c.418	p.R140*	1.000	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
BSX	390259	genome.wustl.edu	37	11	122850010	122850010	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	122850010	122850010	G	A	SNP	BSX	NM_001098169	human	genbank	57_37b	-1	validated	nonsense	c.418	p.R140*	1.000	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
C13orf23	80209	genome.wustl.edu	37	13	39587641	39587641	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	39587641	39587641	C	A	SNP	C13orf23	NM_025138	human	genbank	57_37b	-1	validated	missense	c.1748	p.R583L	0.001	NULL	NULL	-	no_errors	
C15orf58	390637	genome.wustl.edu	37	15	90784778	90784778	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	90784778	90784778	C	T	SNP	C15orf58	NM_001013657	human	genbank	57_37b	+1	validated	missense	c.638	p.S213L	1.000	PatternScan_PHOSPHOPANTETHEINE	PatternScan_PHOSPHOPANTETHEINE	-	no_errors	
C1orf52	148423	genome.wustl.edu	37	1	85718266	85718266	+	RNA	SNP	A	A	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	85718266	85718266	A	T	SNP	C1orf52	NR_024113	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors	
C2orf71	388939	genome.wustl.edu	37	2	29293783	29293783	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	29293783	29293783	C	T	SNP	C2orf71	NM_001029883	human	genbank	57_37b	-1	predicted	silent	c.3345	p.V1115	0.000	NULL	NULL	-	no_errors	
CAPN3	825	genome.wustl.edu	37	15	42652165	42652165	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42652165	42652165	C	T	SNP	CAPN3	NM_000070	human	genbank	57_37b	+1	reviewed	silent	c.162	p.I54	0.016	superfamily_Cysteine proteinases	superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Calpain_III,HMMSmart_SM00720,superfamily_Calpain large subunit middle domain (domain III),superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
CD74	972	genome.wustl.edu	37	5	149784647	149784647	+	Splice_Site	DEL	C	C	-	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	149784647	149784647	C	-	DEL	CD74	NM_001025159	human	genbank	57_37b	-1	validated	splice_site_del	c.537+1	e5+1	1.000	-	-	(deletion:intron[149784331,149784647])	no_errors	
CD74	972	genome.wustl.edu	37	5	149784647	149784647	+	Splice_Site	DEL	C	C	-	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	149784647	149784647	C	-	DEL	CD74	NM_001025159	human	genbank	57_37b	-1	validated	splice_site_del	c.537+1	e5+1	1.000	-	-	(deletion:intron[149784331,149784647])	no_errors	
DHTKD1	55526	genome.wustl.edu	37	10	12129635	12129635	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	12129635	12129635	G	A	SNP	DHTKD1	NM_018706	human	genbank	57_37b	+1	validated	missense	c.624	p.M208I	0.186	superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_E1_dh	superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_E1_dh,HMMPfam_Transket_pyr	-	no_errors	
DIAPH2	1730	genome.wustl.edu	37	X	95993637	95993637	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	95993637	95993637	T	G	SNP	DIAPH2	NM_006729	human	genbank	57_37b	+1	reviewed	missense	c.218	p.L73R	1.000	NULL	HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2,HMMPfam_Drf_DAD	-	no_errors	
DPYSL5	56896	genome.wustl.edu	37	2	27167565	27167565	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27167565	27167565	G	A	SNP	DPYSL5	NM_020134	human	genbank	57_37b	+1	validated	silent	c.1482	p.G494	1.000	NULL	superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556	-	no_errors	
EDA2R	60401	genome.wustl.edu	37	X	65819449	65819449	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	65819449	65819449	C	T	SNP	EDA2R	NM_021783	human	genbank	57_37b	-1	reviewed	silent	c.771	p.L257	1.000	NULL	superfamily_TNF receptor-like,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1	-	no_errors	
EEF2K	29904	genome.wustl.edu	37	16	22291592	22291592	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	22291592	22291592	G	T	SNP	EEF2K	NM_013302	human	genbank	57_37b	+1	reviewed	nonsense	c.1963	p.E655*	1.000	superfamily_SSF81901	superfamily_Kinase_like,HMMSmart_Alpha_kinase,HMMPfam_Alpha_kinase,HMMPfam_Sel1,superfamily_SSF81901	-	no_errors	
EEF2K	29904	genome.wustl.edu	37	16	22291592	22291592	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	22291592	22291592	G	T	SNP	EEF2K	NM_013302	human	genbank	57_37b	+1	reviewed	nonsense	c.1963	p.E655*	1.000	superfamily_SSF81901	superfamily_Kinase_like,HMMSmart_Alpha_kinase,HMMPfam_Alpha_kinase,HMMPfam_Sel1,superfamily_SSF81901	-	no_errors	
ENSG00000246490	0	genome.wustl.edu	37	6	53518660	53518661	+	RNA	INS	-	-	AAT	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	53518660	53518661	-	AAT	INS	ENSG00000246490	ENST00000501312	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.217:0.219	-	-	-	no_errors	
FGL2	10875	genome.wustl.edu	37	7	76825930	76825930	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	76825930	76825930	C	T	SNP	FGL2	NM_006682	human	genbank	57_37b	-1	reviewed	missense	c.986	p.R329H	1.000	HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like	HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors	
FUK	197258	genome.wustl.edu	37	16	70504321	70504322	+	Frame_Shift_Ins	INS	-	-	TG	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	70504321	70504322	-	TG	INS	FUK	NM_145059	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1060_1061	p.Q354fs	0.999:1.000	HMMPfam_Fucokinase	HMMPfam_Fucokinase,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_GHMP_kinases_N,superfamily_GHMP Kinase C-terminal domain,HMMPfam_GHMP_kinases_C	-	no_errors	
GPR32	2854	genome.wustl.edu	37	19	51273962	51273962	+	Silent	SNP	G	G	T	rs35300823	byCluster;byFrequency	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51273962	51273962	G	T	SNP	GPR32	NM_001506	human	genbank	57_37b	+1	provisional	silent	c.105	p.L35	0.004	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
GRIA1	2890	genome.wustl.edu	37	5	153149914	153149914	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	153149914	153149914	G	A	SNP	GRIA1	NM_000827	human	genbank	57_37b	+1	reviewed	missense	c.2209	p.V737M	1.000	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors	
HLA-DRB1	3123	genome.wustl.edu	37	6	32557461	32557461	+	Missense_Mutation	SNP	A	A	G	rs35053532	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32557461	32557461	A	G	SNP	HLA-DRB1	NM_002124	human	genbank	57_37b	-1	reviewed	missense	c.59	p.M20T	0.430	superfamily_MHC_I/II-like_Ag-recog	superfamily_MHC_I/II-like_Ag-recog,HMMPfam_MHC_II_beta,superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1,PatternScan_IG_MHC	-		
HLA-DRB5	3127	genome.wustl.edu	37	6	32489822	32489822	+	Missense_Mutation	SNP	C	C	T	rs115417906	by1000genomes	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32489822	32489822	C	T	SNP	HLA-DRB5	NM_002125	human	genbank	57_37b	-1	reviewed	missense	c.230	p.R77Q	0.000	HMMPfam_MHC_II_beta,superfamily_MHC_I/II-like_Ag-recog	HMMPfam_MHC_II_beta,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726	-		
HMCN1	83872	genome.wustl.edu	37	1	185833711	185833711	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	185833711	185833711	A	C	SNP	HMCN1	NM_031935	human	genbank	57_37b	+1	reviewed	missense	c.449	p.Y150S	1.000	superfamily_vWA-like	superfamily_vWA-like,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,HMMPfam_I-set,HMMSmart_SM00406,PatternScan_CECROPIN,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMPfam_EGF_CA,PatternScan_EGF_2	-	no_errors	
IFT140	9742	genome.wustl.edu	37	16	1616239	1616240	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1616239	1616240	TG	-	DEL	IFT140	NM_014714	human	genbank	57_37b	-1	validated	frame_shift_del	c.1824_1823	p.T608fs	0.006:0.882	NULL	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_TPR-like	(deletion:cds_exon[1616162,1616292])	no_errors	
IFT140	9742	genome.wustl.edu	37	16	1616239	1616240	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1616239	1616240	TG	-	DEL	IFT140	NM_014714	human	genbank	57_37b	-1	validated	frame_shift_del	c.1824_1823	p.T608fs	0.006:0.882	NULL	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_TPR-like	(deletion:cds_exon[1616162,1616292])	no_errors	
IPCEF1	26034	genome.wustl.edu	37	6	154481152	154481152	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	154481152	154481152	C	G	SNP	IPCEF1	NM_001130699	human	genbank	57_37b	-1	validated	missense	c.1128	p.M376I	1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
IQCH	64799	genome.wustl.edu	37	15	67652219	67652219	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	67652219	67652219	G	A	SNP	IQCH	NM_001031715	human	genbank	57_37b	+1	validated	missense	c.749	p.R250K	0.000	NULL	HMMPfam_IQ	-	no_errors	
MEIS2	4212	genome.wustl.edu	37	15	37184562	37184562	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	37184562	37184562	G	A	SNP	MEIS2	NM_170675	human	genbank	57_37b	-1	reviewed	missense	c.1246	p.P416S	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_errors	
MYO3A	53904	genome.wustl.edu	37	10	26457784	26457784	+	Silent	SNP	C	C	T	rs35541310	byCluster	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	26457784	26457784	C	T	SNP	MYO3A	NM_017433	human	genbank	57_37b	+1	reviewed	silent	c.3255	p.S1085	0.987	superfamily_SSF52540,HMMSmart_IQ,HMMPfam_IQ	PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ	-		
OGT	8473	genome.wustl.edu	37	X	70767782	70767782	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70767782	70767782	C	T	SNP	OGT	NM_181672	human	genbank	57_37b	+1	reviewed	missense	c.557	p.T186M	1.000	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_1	-	no_errors	
PCDHA8	56140	genome.wustl.edu	37	5	140222893	140222893	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140222893	140222893	G	A	SNP	PCDHA8	NM_018911	human	genbank	57_37b	+1	reviewed	missense	c.1987	p.A663T	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PCDHB18	54660	genome.wustl.edu	37	5	140616046	140616046	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140616046	140616046	G	-	DEL	PCDHB18	ENST00000274705	human	ensembl	57_37b	+1	known	frame_shift_del	c.1761	p.V588fs	0.088	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	(deletion:cds_exon[140614286,140616490])	no_errors	
PCDHB18	54660	genome.wustl.edu	37	5	140616046	140616046	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140616046	140616046	G	-	DEL	PCDHB18	ENST00000274705	human	ensembl	57_37b	+1	known	frame_shift_del	c.1761	p.V588fs	0.088	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	(deletion:cds_exon[140614286,140616490])	no_errors	
PDE4DIP	9659	genome.wustl.edu	37	1	144904729	144904729	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	144904729	144904729	C	T	SNP	PDE4DIP	NM_014644	human	genbank	57_37b	-1	validated	silent	c.2583	p.L861	1.000	NULL	HMMPfam_Microtub_assoc	-	no_errors	
PDZD2	23037	genome.wustl.edu	37	5	32088295	32088295	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	32088295	32088295	C	T	SNP	PDZD2	NM_178140	human	genbank	57_37b	+1	reviewed	missense	c.4741	p.R1581C	0.808	NULL	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ,PatternScan_PROTEIN_KINASE_ATP	-	no_errors	
PI4KA	5297	genome.wustl.edu	37	22	21088763	21088764	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	21088763	21088764	-	T	INS	PI4KA	NM_058004	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.3646_3645	p.A1215fs	1.000:1.000	NULL	superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PIWIL1	9271	genome.wustl.edu	37	12	130833872	130833872	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	130833872	130833872	C	T	SNP	PIWIL1	NM_004764	human	genbank	57_37b	+1	reviewed	nonsense	c.823	p.R275*	0.975	superfamily_PAZ domain	superfamily_PAZ domain,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors	
PIWIL1	9271	genome.wustl.edu	37	12	130833872	130833872	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	130833872	130833872	C	T	SNP	PIWIL1	NM_004764	human	genbank	57_37b	+1	reviewed	nonsense	c.823	p.R275*	0.975	superfamily_PAZ domain	superfamily_PAZ domain,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors	
POGK	57645	genome.wustl.edu	37	1	166819226	166819226	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	166819226	166819226	G	A	SNP	POGK	NM_017542	human	genbank	57_37b	+1	reviewed	silent	c.1410	p.L470	0.220	HMMPfam_DDE	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMPfam_BrkDBD,superfamily_Homeodomain-like,HMMPfam_CenpB-DNA-bind,HMMSmart_SM00674,HMMPfam_DDE	-	no_errors	
POLQ	10721	genome.wustl.edu	37	3	121207015	121207015	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121207015	121207015	G	A	SNP	POLQ	NM_199420	human	genbank	57_37b	-1	validated	missense	c.4763	p.P1588L	0.001	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Ribonuclease H-like,superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_A,HMMSmart_SM00482,PatternScan_DNA_POLYMERASE_A	-	no_errors	
PPP3CB	5532	genome.wustl.edu	37	10	75204476	75204476	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75204476	75204476	T	A	SNP	PPP3CB	ENST00000394822	human	ensembl	57_37b	-1	known	missense	c.1427	p.D476V	1.000	NULL	superfamily_SSF56300,HMMSmart_PP2Ac,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE	-	no_errors	
RPGR	6103	genome.wustl.edu	37	X	38145181	38145192	+	In_Frame_Del	DEL	TCCCCTTCCACT	TCCCCTTCCACT	-	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	TCCCCTTCCACT	TCCCCTTCCACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	38145181	38145192	TCCCCTTCCACT	-	DEL	RPGR	NM_001034853	human	genbank	57_37b	-1	reviewed	in_frame_del	c.3071_3060	p.EVEG1024in_frame_del	0.002:0.003:0.008:0.011:0.030:0.038:0.035:0.040:0.028:0.000:0.000:0.000	NULL	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1	(deletion:cds_exon[38144793,38146498])	no_errors	
RPS6KA1	6195	genome.wustl.edu	37	1	26885381	26885381	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	26885381	26885381	G	A	SNP	RPS6KA1	NM_001006665	human	genbank	57_37b	+1	reviewed	missense	c.1195	p.D399N	0.986	NULL	superfamily_Kinase_like,HMMPfam_Pkinase,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors	
SPP2	6694	genome.wustl.edu	37	2	234959496	234959496	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	234959496	234959496	G	T	SNP	SPP2	NM_006944	human	genbank	57_37b	+1	reviewed	missense	c.66	p.M22I	0.000	NULL	superfamily_Cystatin/monellin,HMMPfam_Spp-24	-	no_errors	
TRIM24	8805	genome.wustl.edu	37	7	138189074	138189074	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	138189074	138189074	C	G	SNP	TRIM24	NM_015905	human	genbank	57_37b	+1	reviewed	missense	c.404	p.A135G	1.000	superfamily_RING/U-box	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00502,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
TRIM67	440730	genome.wustl.edu	37	1	231351163	231351163	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	231351163	231351163	C	T	SNP	TRIM67	NM_001004342	human	genbank	57_37b	+1	validated	missense	c.2329	p.R777W	0.991	NULL	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMSmart_SM00336,HMMPfam_zf-B_box,superfamily_B-box zinc-binding domain,HMMSmart_SM00502,HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00449,HMMPfam_SPRY	-	no_errors	
VPS18	57617	genome.wustl.edu	37	15	41192326	41192326	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	41192326	41192326	G	A	SNP	VPS18	NM_020857	human	genbank	57_37b	+1	reviewed	missense	c.1310	p.R437H	0.968	NULL	HMMPfam_Pep3_Vps18,superfamily_ARM repeat	-	no_errors	
WDYHV1	55093	genome.wustl.edu	37	8	124448694	124448694	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124448694	124448694	A	T	SNP	WDYHV1	NM_018024	human	genbank	57_37b	+1	provisional	missense	c.236	p.D79V	1.000	HMMPfam_WDYHV	HMMPfam_WDYHV	-	no_errors	
WLS	0	genome.wustl.edu	37	1	68624838	68624838	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	68624838	68624838	G	C	SNP	WLS	NM_001002292	human	genbank	57_37b	-1	validated	missense	c.466	p.R156G	0.915	HMMPfam_DUF1171	HMMPfam_DUF1171	-	no_errors	
ZNF687	57592	genome.wustl.edu	37	1	151261880	151261881	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151261880	151261881	AC	-	DEL	ZNF687	NM_020832	human	genbank	57_37b	+1	provisional	frame_shift_del	c.2498_2499	p.T834fs	1.000:1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	(deletion:cds_exon[151261854,151262016])	no_errors	
ZNF687	57592	genome.wustl.edu	37	1	151261880	151261881	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-BH-A0AY-01	TCGA-BH-A0AY-01	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151261880	151261881	AC	-	DEL	ZNF687	NM_020832	human	genbank	57_37b	+1	provisional	frame_shift_del	c.2498_2499	p.T834fs	1.000:1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	(deletion:cds_exon[151261854,151262016])	no_errors	
