Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AASDHPPT	60496	genome.wustl.edu	37	11	105962115	105962115	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	105962115	105962115	C	G	SNP	AASDHPPT	NM_015423	human	genbank	57_37b	+1	reviewed	missense	c.604	p.L202V	0.996	superfamily_4-PPT_transf	superfamily_4-PPT_transf,HMMPfam_ACPS	-	no_errors	
ADAMTS16	170690	genome.wustl.edu	37	5	5262783	5262783	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	5262783	5262783	G	A	SNP	ADAMTS16	NM_139056	human	genbank	57_37b	+1	reviewed	silent	c.2676	p.V892	0.000	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors	
ADAMTS7	11173	genome.wustl.edu	37	15	79090438	79090438	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	79090438	79090438	G	A	SNP	ADAMTS7	NM_014272	human	genbank	57_37b	-1	reviewed	silent	c.474	p.L158	0.518	HMMPfam_Pep_M12B_propep	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors	
ATRX	546	genome.wustl.edu	37	X	76813032	76813032	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	76813032	76813032	G	A	SNP	ATRX	NM_000489	human	genbank	57_37b	-1	reviewed	missense	c.6589	p.R2197C	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_FYVE/PHD zinc finger,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
AUTS2	26053	genome.wustl.edu	37	7	70254986	70254986	+	Silent	SNP	C	C	T	rs79439293	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	70254986	70254986	C	T	SNP	AUTS2	NM_015570	human	genbank	57_37b	+1	validated	silent	c.2784	p.A928	0.001	NULL	NULL	-		
BRIX1	55299	genome.wustl.edu	37	5	34915891	34915891	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	34915891	34915891	G	A	SNP	BRIX1	NM_018321	human	genbank	57_37b	+1	validated	silent	c.48	p.A16	0.992	NULL	HMMPfam_Brix	-	no_errors	
C16orf59	80178	genome.wustl.edu	37	16	2510938	2510938	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2510938	2510938	G	A	SNP	C16orf59	NM_025108	human	genbank	57_37b	+1	validated	silent	c.318	p.L106	0.082	NULL	NULL	-	no_errors	
C6orf167	253714	genome.wustl.edu	37	6	97627350	97627350	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	97627350	97627350	T	C	SNP	C6orf167	NM_198468	human	genbank	57_37b	-1	predicted	missense	c.2470	p.M824V	1.000	NULL	NULL	-	no_errors	
CALR3	125972	genome.wustl.edu	37	19	16601357	16601357	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16601357	16601357	C	T	SNP	CALR3	NM_145046	human	genbank	57_37b	-1	validated	missense	c.218	p.R73Q	0.990	superfamily_ConA_like_lec_gl,HMMPfam_Calreticulin	superfamily_ConA_like_lec_gl,HMMPfam_Calreticulin,PatternScan_CALRETICULIN_1,PatternScan_CALRETICULIN_2,superfamily_Calret_calnex_P,PatternScan_ER_TARGET	-	no_errors	
CLIP2	7461	genome.wustl.edu	37	7	73790402	73790402	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	73790402	73790402	G	A	SNP	CLIP2	NM_003388	human	genbank	57_37b	+1	reviewed	silent	c.1671	p.Q557	0.997	NULL	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors	
COPG	22820	genome.wustl.edu	37	3	128976344	128976344	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	128976344	128976344	G	A	SNP	COPG	NM_016128	human	genbank	57_37b	+1	validated	missense	c.611	p.R204H	1.000	superfamily_ARM repeat,HMMPfam_Adaptin_N	superfamily_ARM repeat,HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,HMMPfam_Gamma-COP,superfamily_Subdomain of clathrin and coatomer appendage domain	-	no_errors	
CYP2C9	1559	genome.wustl.edu	37	10	96740960	96740960	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	96740960	96740960	G	A	SNP	CYP2C9	NM_000771	human	genbank	57_37b	+1	reviewed	missense	c.982	p.E328K	0.976	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors	
DNAJC14	85406	genome.wustl.edu	37	12	56221997	56221997	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56221997	56221997	G	A	SNP	DNAJC14	NM_032364	human	genbank	57_37b	-1	validated	missense	c.446	p.S149F	0.314	NULL	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ	-	no_errors	
EBF4	57593	genome.wustl.edu	37	20	2736401	2736401	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	2736401	2736401	G	A	SNP	EBF4	NM_001110514	human	genbank	57_37b	+1	provisional	missense	c.1657	p.A553T	1.000	NULL	PatternScan_COE,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG	-	no_errors	
EIF2B5	8893	genome.wustl.edu	37	3	183856022	183856022	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	183856022	183856022	C	T	SNP	EIF2B5	NM_003907	human	genbank	57_37b	+1	reviewed	silent	c.753	p.I251	1.000	superfamily_SSF53448	superfamily_SSF53448,superfamily_Trimer_LpxA_like,HMMPfam_Hexapep,superfamily_ARM-type_fold,HMMSmart_eIF5C,HMMPfam_W2	-	no_errors	
ENSG00000188856	0	genome.wustl.edu	37	8	81471356	81471356	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	81471356	81471356	G	A	SNP	ENSG00000188856	ENST00000339991	human	ensembl	57_37b	+1	known	silent	c.252	p.Q84	1.000	superfamily_Ribosomal protein S2,HMMPfam_Ribosomal_S2	superfamily_Ribosomal protein S2,PatternScan_RIBOSOMAL_S2_1,HMMPfam_Ribosomal_S2	-	no_errors	
FBXL13	222235	genome.wustl.edu	37	7	102453790	102453790	+	Nonstop_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	102453790	102453790	C	G	SNP	FBXL13	NM_145032	human	genbank	57_37b	-1	validated	nonstop	c.2207	p.*736S	0.000	NULL	HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00367	-	no_errors	
FITM2	128486	genome.wustl.edu	37	20	42935837	42935837	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	42935837	42935837	G	A	SNP	FITM2	NM_001080472	human	genbank	57_37b	-1	provisional	silent	c.217	p.L73	0.986	HMMPfam_Scs3p	HMMPfam_Scs3p	-	no_errors	
FOXD3	27022	genome.wustl.edu	37	1	63788817	63788817	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	63788817	63788817	G	A	SNP	FOXD3	NM_012183	human	genbank	57_37b	+1	reviewed	missense	c.88	p.E30K	1.000	NULL	HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2	-	no_errors	
GCN1L1	10985	genome.wustl.edu	37	12	120567110	120567110	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120567110	120567110	G	C	SNP	GCN1L1	NM_006836	human	genbank	57_37b	-1	validated	silent	c.7860	p.L2620	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
GPATCH2	55105	genome.wustl.edu	37	1	217688186	217688186	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	217688186	217688186	A	T	SNP	GPATCH2	NM_018040	human	genbank	57_37b	-1	provisional	missense	c.1144	p.S382T	1.000	NULL	HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors	
HIST1H2AG	8969	genome.wustl.edu	37	6	27100867	27100867	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	27100867	27100867	A	G	SNP	HIST1H2AG	NM_021064	human	genbank	57_37b	+1	reviewed	missense	c.17	p.K6R	1.000	superfamily_Histone-fold,HMMSmart_SM00414	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors	
HSD11B1	3290	genome.wustl.edu	37	1	209880330	209880330	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	209880330	209880330	C	G	SNP	HSD11B1	NM_005525	human	genbank	57_37b	+1	reviewed	missense	c.374	p.S125C	0.001	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT	-	no_errors	
HUWE1	10075	genome.wustl.edu	37	X	53589797	53589797	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	53589797	53589797	C	T	SNP	HUWE1	NM_031407	human	genbank	57_37b	-1	reviewed	missense	c.7199	p.R2400Q	1.000	superfamily_ARM repeat	HMMPfam_DUF908,superfamily_ARM repeat,HMMPfam_DUF913,superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,HMMPfam_WWE,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors	
IGF2R	3482	genome.wustl.edu	37	6	160494353	160494353	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	160494353	160494353	C	T	SNP	IGF2R	NM_000876	human	genbank	57_37b	+1	reviewed	missense	c.4799	p.S1600F	0.995	superfamily_Mannose 6-phosphate receptor domain	superfamily_Mannose 6-phosphate receptor domain,HMMPfam_CIMR,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1	-	no_errors	
IL17B	27190	genome.wustl.edu	37	5	148754037	148754037	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	148754037	148754037	C	T	SNP	IL17B	NM_014443	human	genbank	57_37b	-1	reviewed	silent	c.438	p.Q146	1.000	HMMPfam_IL17,superfamily_SSF57501	HMMPfam_IL17,superfamily_SSF57501	-	no_errors	
IL33	90865	genome.wustl.edu	37	9	6252967	6252967	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	6252967	6252967	G	A	SNP	IL33	NM_033439	human	genbank	57_37b	+1	validated	missense	c.445	p.D149N	0.826	NULL	NULL	-	no_errors	
KIAA0141	9812	genome.wustl.edu	37	5	141309823	141309823	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	141309823	141309823	C	T	SNP	KIAA0141	NM_001142603	human	genbank	57_37b	+1	validated	silent	c.738	p.I246	0.996	superfamily_SSF81901,HMMSmart_SEL1	superfamily_SSF81901,HMMSmart_SEL1,HMMPfam_Sel1	-	no_errors	
KIF13B	23303	genome.wustl.edu	37	8	28999688	28999688	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	28999688	28999688	C	T	SNP	KIF13B	NM_015254	human	genbank	57_37b	-1	validated	missense	c.2320	p.E774K	1.000	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMPfam_FHA,superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors	
KRT19	3880	genome.wustl.edu	37	17	39684410	39684410	+	Silent	SNP	G	G	A	rs11550883	byCluster;by1000genomes	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39684410	39684410	G	A	SNP	KRT19	NM_002276	human	genbank	57_37b	-1	reviewed	silent	c.90	p.A30	0.011	NULL	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-		
LARGE	9215	genome.wustl.edu	37	22	33670562	33670562	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	33670562	33670562	G	A	SNP	LARGE	NM_004737	human	genbank	57_37b	-1	reviewed	missense	c.2122	p.H708Y	1.000	NULL	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8	-	no_errors	
LOC100290951	0	genome.wustl.edu	37	2	47094123	47094123	+	Silent	SNP	G	G	A	rs76589910	byCluster;byFrequency;by1000genomes	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	47094123	47094123	G	A	SNP	LOC100290951	XM_002346460	human	genbank	57_37b	-1	model	silent	c.603	p.P201	0.006	NULL	NULL	-		
LRRIQ1	84125	genome.wustl.edu	37	12	85449856	85449856	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	85449856	85449856	G	A	SNP	LRRIQ1	NM_001079910	human	genbank	57_37b	+1	validated	missense	c.1285	p.E429K	0.000	superfamily_RNI-like	superfamily_RNI-like,HMMSmart_SM00015,HMMPfam_LRR_1,HMMSmart_SM00369,HMMPfam_IQ,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors	
METTL11A	28989	genome.wustl.edu	37	9	132397668	132397668	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	132397668	132397668	C	T	SNP	METTL11A	NM_014064	human	genbank	57_37b	+1	validated	silent	c.597	p.L199	0.745	HMMPfam_DUF858,superfamily_SSF53335	HMMPfam_DUF858,superfamily_SSF53335	-	no_errors	
MREG	55686	genome.wustl.edu	37	2	216878008	216878008	+	Missense_Mutation	SNP	C	C	G	rs1864253	byCluster;byFrequency;by1000genomes	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	216878008	216878008	C	G	SNP	MREG	NM_018000	human	genbank	57_37b	-1	validated	missense	c.43	p.G15R	0.503	NULL	NULL	-		
MUC16	94025	genome.wustl.edu	37	19	9091474	9091474	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9091474	9091474	G	C	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.341	p.S114C	0.004	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
MYH10	4628	genome.wustl.edu	37	17	8397132	8397132	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8397132	8397132	C	A	SNP	MYH10	NM_005964	human	genbank	57_37b	-1	validated	missense	c.4035	p.K1345N	1.000	HMMPfam_Myosin_tail_1	superfamily_Myosin S1 fragment N-terminal domain,HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1	-	no_errors	
NOP56	10528	genome.wustl.edu	37	20	2636074	2636074	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	2636074	2636074	G	A	SNP	NOP56	NM_006392	human	genbank	57_37b	+1	reviewed	missense	c.673	p.E225K	1.000	superfamily_SSF89124	HMMPfam_NOP5NT,HMMPfam_NOSIC,superfamily_SSF89124,HMMPfam_Nop	-	no_errors	
NR2E3	10002	genome.wustl.edu	37	15	72109942	72109942	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	72109942	72109942	G	C	SNP	NR2E3	NM_014249	human	genbank	57_37b	+1	reviewed	missense	c.1150	p.E384Q	1.000	superfamily_Nuclear receptor ligand-binding domain,HMMPfam_Hormone_recep	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors	
NXF5	55998	genome.wustl.edu	37	X	101097746	101097746	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	101097746	101097746	C	G	SNP	NXF5	NM_032946	human	genbank	57_37b	-1	reviewed	missense	c.19	p.D7H	0.000	superfamily_RNA-binding domain RBD,HMMPfam_Tap-RNA_bind	superfamily_RNA-binding domain RBD,HMMPfam_Tap-RNA_bind,superfamily_L domain-like,superfamily_NTF2-like	-	no_errors	
OR2L5	0	genome.wustl.edu	37	1	248185879	248185879	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248185879	248185879	C	T	SNP	OR2L5	ENST00000355281	human	ensembl	57_37b	+1	known	silent	c.630	p.F210	0.001	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-		
RAB33A	9363	genome.wustl.edu	37	X	129318409	129318409	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	129318409	129318409	G	A	SNP	RAB33A	NM_004794	human	genbank	57_37b	+1	reviewed	missense	c.409	p.G137R	1.000	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	-	no_errors	
RAB39B	116442	genome.wustl.edu	37	X	154490356	154490356	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	154490356	154490356	C	T	SNP	RAB39B	NM_171998	human	genbank	57_37b	-1	reviewed	missense	c.374	p.C125Y	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors	
RADIL	55698	genome.wustl.edu	37	7	4843213	4843214	+	In_Frame_Ins	INS	-	-	CTGCCAGGG	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	4843213	4843214	-	CTGCCAGGG	INS	RADIL	NM_018059	human	genbank	57_37b	-1	validated	in_frame_ins	c.2463_2462	p.821in_frame_insSPG	0.010:0.038	NULL	superfamily_Ubiquitin-like,HMMPfam_RA,HMMSmart_SM00314,superfamily_SMAD/FHA domain,HMMPfam_FHA,HMMPfam_DIL,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors	
RASGRF1	5923	genome.wustl.edu	37	15	79317805	79317805	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	79317805	79317805	G	A	SNP	RASGRF1	NM_002891	human	genbank	57_37b	-1	reviewed	nonsense	c.1393	p.Q465*	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	-	no_errors	
RPS10L	0	genome.wustl.edu	37	20	820161	820161	+	Missense_Mutation	SNP	C	C	A	rs667568	byCluster;by2Hit2Allele	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	820161	820161	C	A	SNP	RPS10L	ENST00000217256	human	ensembl	57_37b	-1	known	missense	c.460	p.G154W	1.000	NULL	HMMPfam_S10_plectin	-		
SAAL1	113174	genome.wustl.edu	37	11	18127558	18127559	+	In_Frame_Ins	INS	-	-	CGG	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	18127558	18127559	-	CGG	INS	SAAL1	NM_138421	human	genbank	57_37b	-1	validated	in_frame_ins	c.31_30	p.10in_frame_insP	0.000:0.000	NULL	superfamily_ARM-type_fold	-	no_errors	
SFT2D2	375035	genome.wustl.edu	37	1	168204351	168204351	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	168204351	168204351	C	T	SNP	SFT2D2	NM_199344	human	genbank	57_37b	+1	validated	silent	c.249	p.L83	1.000	HMMPfam_SFT2	HMMPfam_SFT2	-	no_errors	
STAT3	6774	genome.wustl.edu	37	17	40481441	40481441	+	Missense_Mutation	SNP	C	C	T	rs113994137	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40481441	40481441	C	T	SNP	STAT3	NM_139276	human	genbank	57_37b	-1	reviewed	missense	c.1268	p.R423Q	1.000	HMMPfam_STAT_bind,superfamily_p53-like transcription factors	superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_p53-like transcription factors,superfamily_SH2 domain,HMMPfam_SH2	-		
SVEP1	79987	genome.wustl.edu	37	9	113166798	113166798	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	113166798	113166798	C	G	SNP	SVEP1	NM_153366	human	genbank	57_37b	-1	validated	missense	c.9475	p.D3159H	0.982	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Growth factor receptor domain,PatternScan_EGF_2,HMMPfam_GCC2_GCC3,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_HYR,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Pentaxin,HMMPfam_EGF_CA,HMMPfam_EGF_2	-	no_errors	
TGFBI	7045	genome.wustl.edu	37	5	135389690	135389690	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	135389690	135389690	C	T	SNP	TGFBI	NM_000358	human	genbank	57_37b	+1	reviewed	silent	c.1185	p.F395	0.111	superfamily_FAS1 domain,HMMPfam_Fasciclin	HMMPfam_EMI,superfamily_FAS1 domain,HMMPfam_Fasciclin,HMMSmart_SM00554	-	no_errors	
TMEM38B	55151	genome.wustl.edu	37	9	108483865	108483865	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	108483865	108483865	C	T	SNP	TMEM38B	NM_018112	human	genbank	57_37b	+1	provisional	missense	c.317	p.S106L	0.792	HMMPfam_DUF714	HMMPfam_DUF714	-	no_errors	
TOX4	9878	genome.wustl.edu	37	14	21955713	21955713	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21955713	21955713	A	T	SNP	TOX4	NM_014828	human	genbank	57_37b	+1	validated	missense	c.179	p.D60V	1.000	NULL	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578406	7578406	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.524	p.R175H	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-		
TTLL4	9654	genome.wustl.edu	37	2	219619083	219619083	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	219619083	219619083	A	T	SNP	TTLL4	NM_014640	human	genbank	57_37b	+1	validated	missense	c.3571	p.S1191C	0.064	NULL	HMMPfam_TTL,superfamily_SSF56059	-	no_errors	
VPS24	51652	genome.wustl.edu	37	2	86769398	86769398	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	86769398	86769398	C	T	SNP	VPS24	NM_016079	human	genbank	57_37b	-1	reviewed	missense	c.83	p.R28K	1.000	HMMPfam_Snf7	HMMPfam_Snf7	-	no_errors	
VWF	7450	genome.wustl.edu	37	12	6125319	6125319	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6125319	6125319	G	T	SNP	VWF	NM_000552	human	genbank	57_37b	-1	reviewed	silent	c.5391	p.V1797	0.443	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_VWC,PatternScan_VWFC_1,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors	
XKR4	114786	genome.wustl.edu	37	8	56436760	56436760	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	56436760	56436760	C	T	SNP	XKR4	NM_052898	human	genbank	57_37b	+1	provisional	missense	c.1927	p.R643W	1.000	NULL	HMMPfam_XK-related	-	no_errors	
YY1AP1	55249	genome.wustl.edu	37	1	155658085	155658085	+	Silent	SNP	T	T	C	rs2666826	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155658085	155658085	T	C	SNP	YY1AP1	ENST00000368339	human	ensembl	57_37b	-1	known	silent	c.171	p.E57	1.000	NULL	NULL	-		
ZNF219	51222	genome.wustl.edu	37	14	21561030	21561030	+	Silent	SNP	G	G	A	rs116749937	byCluster;by1000genomes	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21561030	21561030	G	A	SNP	ZNF219	NM_001101672	human	genbank	57_37b	-1	validated	silent	c.426	p.G142	0.018	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-		
ZNF589	51385	genome.wustl.edu	37	3	48309446	48309446	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B0-01	TCGA-BH-A0B0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48309446	48309446	C	T	SNP	ZNF589	NM_016089	human	genbank	57_37b	+1	validated	silent	c.265	p.L89	0.112	HMMSmart_SM00355	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
