Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AARS2	57505	genome.wustl.edu	37	6	44274746	44274746	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44274746	44274746	G	A	SNP	AARS2	NM_020745	human	genbank	57_37b	-1	validated	missense	c.1063	p.R355C	1.000	HMMPfam_tRNA-synt_2c,superfamily_Ala-tRNA-synth_IIc_anticod-bd	superfamily_SSF55681,HMMPfam_tRNA-synt_2c,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA_SAD	-	no_errors	
ACADM	34	genome.wustl.edu	37	1	76198785	76198785	+	Silent	SNP	G	G	A	rs3818855	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	76198785	76198785	G	A	SNP	ACADM	ENST00000370834	human	ensembl	57_37b	+1	known	silent	c.336	p.A112	0.010	superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_N	superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like,PatternScan_ACYL_COA_DH_2	-		
ACTN2	88	genome.wustl.edu	37	1	236918367	236918367	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	236918367	236918367	A	C	SNP	ACTN2	NM_001103	human	genbank	57_37b	+1	reviewed	missense	c.2023	p.M675L	1.000	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,HMMPfam_efhand_Ca_insen	-	no_errors	
C11orf16	56673	genome.wustl.edu	37	11	8950998	8950998	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	8950998	8950998	C	A	SNP	C11orf16	NM_020643	human	genbank	57_37b	-1	validated	missense	c.250	p.A84S	0.020	NULL	NULL	-	no_errors	
C12orf64	283310	genome.wustl.edu	37	12	80658942	80658942	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	80658942	80658942	G	A	SNP	C12orf64	XM_002343203	human	genbank	57_37b	+1	model	missense	c.1999	p.G667S	0.311	HMMPfam_C8	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_AbfB domain (Pfam 05270),HMMSmart_SM00041	-	no_errors	
C1orf26	54823	genome.wustl.edu	37	1	185240474	185240474	+	Missense_Mutation	SNP	A	A	G	rs12041704	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	185240474	185240474	A	G	SNP	C1orf26	NM_001105518	human	genbank	57_37b	+1	validated	missense	c.2461	p.N821D	1.000	NULL	superfamily_SSF88723,HMMSmart_PINc	-		
C2orf76	130355	genome.wustl.edu	37	2	120078778	120078778	+	Missense_Mutation	SNP	T	T	C	rs6542522	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	120078778	120078778	T	C	SNP	C2orf76	NM_001017927	human	genbank	57_37b	-1	predicted	missense	c.136	p.I46V	0.313	HMMPfam_DUF2340	HMMPfam_DUF2340	-		
C4orf10	317648	genome.wustl.edu	37	4	2952506	2952506	+	RNA	SNP	A	A	G	rs1063745	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	2952506	2952506	A	G	SNP	C4orf10	NR_015453	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.000	-	-	-		
CBWD2	150472	genome.wustl.edu	37	2	114220055	114220055	+	Silent	SNP	T	T	C	rs1210133	byCluster;byFrequency;bySubmitter;byHapMap;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	114220055	114220055	T	C	SNP	CBWD2	NM_172003	human	genbank	57_37b	+1	validated	silent	c.646	p.L216	0.010	superfamily_SSF52540,HMMPfam_cobW	superfamily_SSF52540,HMMPfam_cobW,HMMPfam_CobW_C,superfamily_Cbl_biosynth_CobW-like_C	-		
CDKN2AIP	55602	genome.wustl.edu	37	4	184367676	184367676	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	184367676	184367676	C	T	SNP	CDKN2AIP	NM_017632	human	genbank	57_37b	+1	provisional	missense	c.839	p.S280L	0.000	NULL	superfamily_dsRNA-binding domain-like	-	no_errors	
CENPF	1063	genome.wustl.edu	37	1	214794222	214794222	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	214794222	214794222	T	C	SNP	CENPF	NM_016343	human	genbank	57_37b	+1	reviewed	silent	c.798	p.A266	0.000	HMMPfam_Cenp-F_N	HMMPfam_Cenp-F_N,superfamily_Spectrin repeat,HMMPfam_Cenp-F_leu_zip,superfamily_Prefoldin,HMMPfam_Rb-bdg_C_Cenp-F	-	no_errors	
CES4	51716	genome.wustl.edu	37	16	55806311	55806311	+	Missense_Mutation	SNP	G	G	T	rs28538364	byCluster;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	55806311	55806311	G	T	SNP	CES4	ENST00000379885	human	ensembl	57_37b	+1	known	missense	c.162	p.W54C	1.000	HMMPfam_COesterase,superfamily_SSF53474	HMMPfam_COesterase,superfamily_SSF53474	-		
CHRM1	1128	genome.wustl.edu	37	11	62677587	62677587	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62677587	62677587	G	C	SNP	CHRM1	NM_000738	human	genbank	57_37b	-1	reviewed	missense	c.986	p.P329R	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
CHSY3	337876	genome.wustl.edu	37	5	129520027	129520027	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	129520027	129520027	A	T	SNP	CHSY3	NM_175856	human	genbank	57_37b	+1	validated	missense	c.1192	p.R398W	1.000	HMMPfam_CHGN	HMMPfam_CHGN,superfamily_SSF53448	-	no_errors	
CROCCL1	84809	genome.wustl.edu	37	1	16944809	16944809	+	RNA	SNP	G	G	C	rs3093	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16944809	16944809	G	C	SNP	CROCCL1	NR_026752	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
DIAPH3	81624	genome.wustl.edu	37	13	60240935	60240935	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	60240935	60240935	T	C	SNP	DIAPH3	NM_001042517	human	genbank	57_37b	-1	validated	missense	c.3365	p.N1122S	0.933	NULL	HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2,PatternScan_RNASE_PANCREATIC,HMMPfam_Drf_DAD	-	no_errors	
ENSG00000120555	0	genome.wustl.edu	37	10	38680963	38680963	+	Missense_Mutation	SNP	G	T	T	rs2754364	bySubmitter	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	38680963	38680963	G	T	SNP	ENSG00000120555	ENST00000239730	human	ensembl	57_37b	-1	known	missense	c.184	p.P62T	1.000	HMMPfam_Septin	HMMPfam_Septin	-		
ENSG00000151539	0	genome.wustl.edu	37	4	3949637	3949637	+	Missense_Mutation	SNP	G	G	A	rs6824997	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3949637	3949637	G	A	SNP	ENSG00000151539	ENST00000281228	human	ensembl	57_37b	-1	known	missense	c.559	p.R187W	0.054	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_16	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_16	-		
ENSG00000199963	0	genome.wustl.edu	37	1	39392574	39392574	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	39392574	39392574	C	T	SNP	ENSG00000199963	ENST00000363093	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.009	-	-	-	no_errors	
ENSG00000205307	0	genome.wustl.edu	37	7	100170027	100170027	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100170027	100170027	G	C	SNP	ENSG00000205307	ENST00000342773	human	ensembl	57_37b	-1	known	silent	c.483	p.S161	0.000	NULL	NULL	-	no_errors	
ENSG00000214803	0	genome.wustl.edu	37	8	125259569	125259569	+	Silent	SNP	A	A	G	rs16899467	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	125259569	125259569	A	G	SNP	ENSG00000214803	ENST00000399016	human	ensembl	57_37b	-1	known	silent	c.70	p.L24	0.000	NULL	NULL	-		
ENSG00000225853	0	genome.wustl.edu	37	X	47518800	47518800	+	RNA	DEL	G	G	-	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47518800	47518800	G	-	DEL	ENSG00000225853	ENST00000423937	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	(deletion:rna[47518252,47520138])	no_errors	
ENSG00000229508	0	genome.wustl.edu	37	7	57128882	57128882	+	Splice_Site	SNP	C	C	G	rs74953039	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	57128882	57128882	C	G	SNP	ENSG00000229508	ENST00000418422	human	ensembl	57_37b	-1	known	splice_site	c.NULL	NULL	1.000	-	-	-		
ENSG00000233572	0	genome.wustl.edu	37	19	52518871	52518871	+	RNA	SNP	G	G	C	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52518871	52518871	G	C	SNP	ENSG00000233572	ENST00000440808	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.029	-	-	-	no_errors	
ENSG00000235812	0	genome.wustl.edu	37	14	70712731	70712731	+	Silent	SNP	T	T	G	rs55760949	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	70712731	70712731	T	G	SNP	ENSG00000235812	ENST00000433248	human	ensembl	57_37b	-1	known	silent	c.1137	p.T379	0.000	HMMSmart_SM00608,HMMPfam_ADAM_CR	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR"	-		
ENSG00000244845	0	genome.wustl.edu	37	3	186069348	186069348	+	RNA	SNP	G	G	A	rs28675864	byCluster;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	186069348	186069348	G	A	SNP	ENSG00000244845	ENST00000499916	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.001	-	-	-		
ENSG00000245273	0	genome.wustl.edu	37	14	34418892	34418892	+	RNA	SNP	T	C	C	rs73246258	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	34418892	34418892	T	C	SNP	ENSG00000245273	ENST00000500775	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.083	-	-	-		
ENSG00000245496	0	genome.wustl.edu	37	10	27540647	27540647	+	RNA	SNP	G	G	A	rs12774718	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	27540647	27540647	G	A	SNP	ENSG00000245496	ENST00000501900	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.076	-	-	-		
ENSG00000245669	0	genome.wustl.edu	37	7	72577032	72577032	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	72577032	72577032	C	T	SNP	ENSG00000245669	ENST00000499786	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.080	-	-	-	no_errors	
ENSG00000247228	0	genome.wustl.edu	37	16	70193486	70193486	+	RNA	SNP	G	G	A	rs3811354	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	70193486	70193486	G	A	SNP	ENSG00000247228	ENST00000502126	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.003	-	-	-		
ENSG00000248007	0	genome.wustl.edu	37	4	57973818	57973818	+	RNA	SNP	C	C	G	rs7684129	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	57973818	57973818	C	G	SNP	ENSG00000248007	ENST00000487217	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
FAM120C	54954	genome.wustl.edu	37	X	54099576	54099576	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	54099576	54099576	C	G	SNP	FAM120C	NM_017848	human	genbank	57_37b	-1	validated	missense	c.3181	p.D1061H	1.000	NULL	NULL	-	no_errors	
FAM171A1	221061	genome.wustl.edu	37	10	15256057	15256057	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	15256057	15256057	T	C	SNP	FAM171A1	ENST00000396781	human	ensembl	57_37b	-1	known	missense	c.1526	p.E509G	0.959	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors	
FAM22D	728130	genome.wustl.edu	37	10	89124862	89124862	+	Missense_Mutation	SNP	G	G	A	rs2767117	byCluster	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89124862	89124862	G	A	SNP	FAM22D	NM_001009610	human	genbank	57_37b	+1	predicted	missense	c.1420	p.E474K	0.000	NULL	NULL	-		
FAM3C	10447	genome.wustl.edu	37	7	121018965	121018965	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	121018965	121018965	A	C	SNP	FAM3C	NM_001040020	human	genbank	57_37b	-1	reviewed	missense	c.117	p.F39L	1.000	NULL	NULL	-	no_errors	
FBXO39	162517	genome.wustl.edu	37	17	6684022	6684022	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	6684022	6684022	C	A	SNP	FBXO39	NM_153230	human	genbank	57_37b	+1	validated	missense	c.835	p.Q279K	0.997	superfamily_SSF52047	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047	-	no_errors	
FLJ39582	0	genome.wustl.edu	37	22	21363561	21363561	+	RNA	SNP	T	T	C	rs4820723	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	21363561	21363561	T	C	SNP	FLJ39582	NR_027051	human	genbank	57_37b	+1	validated	rna	NULL	NULL	1.000	-	-	-		
GOLGA8E	390535	genome.wustl.edu	37	15	23441090	23441090	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23441090	23441090	G	A	SNP	GOLGA8E	ENST00000450934	human	ensembl	57_37b	+1	known	silent	c.180	p.S60	0.000	NULL	NULL	-	no_errors	
GPAT2	150763	genome.wustl.edu	37	2	96688802	96688802	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	96688802	96688802	C	G	SNP	GPAT2	ENST00000335448	human	ensembl	57_37b	-1	known	missense	c.2288	p.G763A	0.001	NULL	HMMPfam_Acyltransferase,HMMSmart_SM00563	-	no_errors	
GPR98	84059	genome.wustl.edu	37	5	90020923	90020923	+	Silent	SNP	T	G	G	rs16869042	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	90020923	90020923	T	G	SNP	GPR98	NM_032119	human	genbank	57_37b	+1	reviewed	silent	c.9927	p.P3309	0.577	NULL	HMMSmart_SM00237,HMMPfam_Calx-beta,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EPTP,PatternScan_A_DEAMINASE,PatternScan_LIPOYL,HMMPfam_GPS	-		
GTPBP8	29083	genome.wustl.edu	37	3	112710242	112710242	+	Silent	SNP	T	C	C	rs2248029	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	112710242	112710242	T	C	SNP	GTPBP8	ENST00000305485	human	ensembl	57_37b	+1	known	silent	c.387	p.P129	0.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_MMR_HSR1	-		
HCG27	253018	genome.wustl.edu	37	6	31170713	31170713	+	RNA	SNP	T	T	C	rs114945285	byCluster;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31170713	31170713	T	C	SNP	HCG27	NR_026791	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.013	-	-	-		
HGC6.3	0	genome.wustl.edu	37	6	168377012	168377012	+	Silent	SNP	G	G	T	rs78475769	byCluster	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	168377012	168377012	G	T	SNP	HGC6.3	NM_001129895	human	genbank	57_37b	-1	predicted	silent	c.321	p.S107	0.817	NULL	NULL	-		
HSFYL1	0	genome.wustl.edu	37	22	17309881	17309881	+	RNA	SNP	A	A	G	rs16981741	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	17309881	17309881	A	G	SNP	HSFYL1	NR_003607	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.034	-	-	-		
HSPG2	3339	genome.wustl.edu	37	1	22176924	22176924	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	22176924	22176924	A	C	SNP	HSPG2	ENST00000374695	human	ensembl	57_37b	-1	known	missense	c.7226	p.V2409G	0.751	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	HMMPfam_SEA,HMMSmart_SM00200,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMSmart_SM00281,HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_LAM_1,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMPfam_V-set,HMMPfam_ig,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMPfam_EGF,HMMPfam_Laminin_G_1	-	no_errors	
IDO1	3620	genome.wustl.edu	37	8	39771451	39771451	+	Missense_Mutation	SNP	G	G	A	rs35059413	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	39771451	39771451	G	A	SNP	IDO1	NM_002164	human	genbank	57_37b	+1	validated	missense	c.10	p.A4T	0.000	NULL	HMMPfam_IDO,PatternScan_IDO_1,PatternScan_IDO_2	-		
KDM4C	23081	genome.wustl.edu	37	9	7011799	7011799	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	7011799	7011799	G	T	SNP	KDM4C	NM_015061	human	genbank	57_37b	+1	reviewed	missense	c.1888	p.A630S	1.000	NULL	HMMSmart_SM00545,HMMPfam_JmjN,HMMSmart_SM00558,HMMPfam_JmjC,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT	-	no_errors	
KHDRBS3	10656	genome.wustl.edu	37	8	136619254	136619254	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	136619254	136619254	T	A	SNP	KHDRBS3	NM_006558	human	genbank	57_37b	+1	provisional	missense	c.864	p.D288E	1.000	NULL	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors	
KLHDC8B	200942	genome.wustl.edu	37	3	49211701	49211701	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49211701	49211701	G	A	SNP	KLHDC8B	ENST00000445277	human	ensembl	57_37b	+1	known	splice_site	c.404+2	e2+2	1.000	-	-	-	no_errors	
LAMB4	22798	genome.wustl.edu	37	7	107732103	107732103	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	107732103	107732103	C	T	SNP	LAMB4	NM_007356	human	genbank	57_37b	-1	validated	missense	c.1669	p.E557K	1.000	HMMSmart_SM00180	HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2	-	no_errors	
LILRP2	79166	genome.wustl.edu	37	19	55220725	55220725	+	RNA	SNP	G	G	A	rs56036306	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55220725	55220725	G	A	SNP	LILRP2	NR_003061	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.000	-	-	-		
LOC100128190	0	genome.wustl.edu	37	Y	13537371	13537371	+	RNA	SNP	C	C	T	rs78642491	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	Y	13537371	13537371	C	T	SNP	LOC100128190	XR_037566	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.047	-	-	-		
LOC100130814	0	genome.wustl.edu	37	14	101540817	101540817	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	101540817	101540817	C	-	DEL	LOC100130814	XM_001726527	human	genbank	57_37b	+1	model	frame_shift_del	c.331	p.R112fs	0.000	NULL	NULL	(deletion:cds_exon[101540487,101540888])	no_errors	
LOC100287255	0	genome.wustl.edu	37	18	60985879	60985879	+	Missense_Mutation	SNP	T	T	C	rs1801018	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	60985879	60985879	T	C	SNP	LOC100287255	XM_002343614	human	genbank	57_37b	+1	model	missense	c.670	p.C224R	1.000	NULL	NULL	-		
LOC100287723	0	genome.wustl.edu	37	2	90458676	90458676	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	90458676	90458676	G	A	SNP	LOC100287723	XM_002342230	human	genbank	57_37b	+1	model	missense	c.1891	p.A631T	1.000	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406	-	no_errors	
LOC100288073	0	genome.wustl.edu	37	4	165110534	165110534	+	RNA	SNP	T	T	C	rs2018210	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	165110534	165110534	T	C	SNP	LOC100288073	XR_078312	human	genbank	57_37b	+1	model	rna	NULL	NULL	1.000	-	-	-		
LOC100288073	0	genome.wustl.edu	37	4	165110771	165110771	+	RNA	SNP	G	G	C	rs79327385	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	165110771	165110771	G	C	SNP	LOC100288073	XR_078312	human	genbank	57_37b	+1	model	rna	NULL	NULL	1.000	-	-	-		
LOC100288659	0	genome.wustl.edu	37	8	94658766	94658766	+	RNA	SNP	A	T	T	rs11988383	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	94658766	94658766	A	T	SNP	LOC100288659	XR_078392	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.091	-	-	-		
LOC100289151	0	genome.wustl.edu	37	10	15058964	15058964	+	Missense_Mutation	SNP	C	C	T	rs113187434	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	15058964	15058964	C	T	SNP	LOC100289151	XM_002342972	human	genbank	57_37b	-1	model	missense	c.227	p.C76Y	1.000	NULL	NULL	-		
LOC134505	134505	genome.wustl.edu	37	5	102368493	102368493	+	Nonsense_Mutation	SNP	C	T	T	rs62362558	byCluster;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	102368493	102368493	C	T	SNP	LOC134505	XM_002342545	human	genbank	57_37b	+1	model	nonsense	c.310	p.R104*	0.051	"superfamily_ARM repeat,superfamily_""Winged helix"" DNA-binding domain"	"superfamily_ARM repeat,superfamily_""Winged helix"" DNA-binding domain"	-		
LOC220429	220429	genome.wustl.edu	37	13	50466633	50466633	+	RNA	SNP	C	C	T	rs35551290	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	50466633	50466633	C	T	SNP	LOC220429	NR_003268	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.091	-	-	-		
LOC284395	284395	genome.wustl.edu	37	19	29919647	29919647	+	Nonsense_Mutation	SNP	G	G	A	rs8107220	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	29919647	29919647	G	A	SNP	LOC284395	XM_378787	human	genbank	57_37b	-1	model	nonsense	c.250	p.R84*	0.000	NULL	NULL	-		
LOC284685	284685	genome.wustl.edu	37	1	166245169	166245169	+	RNA	SNP	A	A	G	rs1901356	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	166245169	166245169	A	G	SNP	LOC284685	XR_017685	human	genbank	57_37b	-1	model	rna	NULL	NULL	1.000	-	-	-		
LOC399804	399804	genome.wustl.edu	37	10	97949572	97949572	+	RNA	SNP	A	C	C	rs11188656	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	97949572	97949572	A	C	SNP	LOC399804	XR_016532	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.348	-	-	-		
LOC440386	440386	genome.wustl.edu	37	16	74401375	74401375	+	RNA	SNP	T	T	A	rs7200712	byCluster;by2Hit2Allele;byHapMap	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	74401375	74401375	T	A	SNP	LOC440386	XR_040492	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.000	-	-	-		
LOC642413	642413	genome.wustl.edu	37	10	81630180	81630180	+	RNA	SNP	C	C	T	rs75047600	byFrequency	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	81630180	81630180	C	T	SNP	LOC642413	XR_016155	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.982	-	-	-		
LOC645939	645939	genome.wustl.edu	37	1	240934072	240934072	+	RNA	SNP	T	T	C	rs6695843	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	240934072	240934072	T	C	SNP	LOC645939	XR_078239	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.659	-	-	-		
LOC646214	646214	genome.wustl.edu	37	15	21935791	21935791	+	RNA	SNP	C	C	T	rs8040953	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21935791	21935791	C	T	SNP	LOC646214	NR_027053	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.002	-	-	-		
LOC729492	729492	genome.wustl.edu	37	11	125003004	125003004	+	Missense_Mutation	SNP	A	G	G	rs653552	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	125003004	125003004	A	G	SNP	LOC729492	XM_001130432	human	genbank	57_37b	-1	model	missense	c.365	p.L122P	0.001	NULL	NULL	-		
LOC729668	729668	genome.wustl.edu	37	10	30663368	30663368	+	RNA	SNP	T	T	C	rs2297039	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	30663368	30663368	T	C	SNP	LOC729668	NR_003524	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.168	-	-	-		
MCART1	92014	genome.wustl.edu	37	9	37878474	37878474	+	RNA	DEL	A	A	-	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	37878474	37878474	A	-	DEL	MCART1	NR_024872	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.999	-	-	(deletion:rna[37877572,37880745])	no_errors	
MED24	9862	genome.wustl.edu	37	17	38187823	38187823	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38187823	38187823	G	A	SNP	MED24	NM_014815	human	genbank	57_37b	-1	reviewed	silent	c.1035	p.T345	0.018	NULL	NULL	-	no_errors	
MIR548H3	0	genome.wustl.edu	37	17	13446924	13446924	+	RNA	SNP	G	A	A	rs9913045	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	13446924	13446924	G	A	SNP	MIR548H3	ENST00000408771	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.003	-	-	-		
MYRIP	25924	genome.wustl.edu	37	3	40291713	40291713	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	40291713	40291713	A	G	SNP	MYRIP	NM_015460	human	genbank	57_37b	+1	validated	missense	c.2263	p.I755V	1.000	NULL	superfamily_FYVE_PHD_ZnF,HMMPfam_MOBP	-	no_errors	
OR2J3	442186	genome.wustl.edu	37	6	29079925	29079925	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29079925	29079925	C	G	SNP	OR2J3	NM_001005216	human	genbank	57_37b	+1	validated	silent	c.258	p.V86	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR4P4	81300	genome.wustl.edu	37	11	55406228	55406228	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55406228	55406228	T	A	SNP	OR4P4	NM_001004124	human	genbank	57_37b	+1	provisional	missense	c.395	p.I132N	0.035	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PACS2	23241	genome.wustl.edu	37	14	105858022	105858022	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105858022	105858022	C	T	SNP	PACS2	NM_001100913	human	genbank	57_37b	+1	validated	missense	c.2141	p.P714L	0.973	HMMPfam_Pacs-1	HMMPfam_Pacs-1	-	no_errors	
PCNXL2	80003	genome.wustl.edu	37	1	233397811	233397811	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	233397811	233397811	G	A	SNP	PCNXL2	NM_014801	human	genbank	57_37b	-1	provisional	missense	c.460	p.H154Y	0.322	NULL	PatternScan_DNAJ_1,HMMPfam_Pecanex_C	-	no_errors	
PLEKHM2	23207	genome.wustl.edu	37	1	16043237	16043237	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16043237	16043237	T	C	SNP	PLEKHM2	NM_015164	human	genbank	57_37b	+1	validated	missense	c.203	p.V68A	1.000	HMMPfam_RUN	HMMPfam_RUN,HMMSmart_RUN,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors	
PMP22	5376	genome.wustl.edu	37	17	15134333	15134333	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	15134333	15134333	C	T	SNP	PMP22	NM_000304	human	genbank	57_37b	-1	reviewed	silent	c.384	p.S128	0.000	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin,PatternScan_PMP22_1,PatternScan_PMP22_2	-	no_errors	
PROM1	8842	genome.wustl.edu	37	4	16040617	16040617	+	Silent	SNP	C	T	T	rs76963591	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	16040617	16040617	C	T	SNP	PROM1	NM_006017	human	genbank	57_37b	-1	reviewed	silent	c.228	p.L76	0.001	HMMPfam_Prominin	HMMPfam_Prominin	-		
REG1P	5969	genome.wustl.edu	37	2	79364457	79364457	+	RNA	SNP	G	G	A	rs3819316	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	79364457	79364457	G	A	SNP	REG1P	NR_002714	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.011	-	-	-		
RPS14	6208	genome.wustl.edu	37	5	149826455	149826455	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	149826455	149826455	G	C	SNP	RPS14	NM_001025070	human	genbank	57_37b	-1	reviewed	missense	c.221	p.A74G	1.000	superfamily_Translational machinery components,HMMPfam_Ribosomal_S11	superfamily_Translational machinery components,HMMPfam_Ribosomal_S11,PatternScan_RIBOSOMAL_S11	-	no_errors	
SAPS1	22870	genome.wustl.edu	37	19	55742202	55742202	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55742202	55742202	G	C	SNP	SAPS1	NM_014931	human	genbank	57_37b	-1	validated	missense	c.2510	p.P837R	0.007	NULL	HMMPfam_SAPS	-	no_errors	
SEPT13	441220	genome.wustl.edu	37	7	45776474	45776474	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	45776474	45776474	C	T	SNP	SEPT13	ENST00000417129	human	ensembl	57_37b	-1	known	missense	c.457	p.V153I	1.000	HMMPfam_Septin	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Septin	-	no_errors	
SLC25A40	55972	genome.wustl.edu	37	7	87466068	87466068	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	87466068	87466068	T	G	SNP	SLC25A40	NM_018843	human	genbank	57_37b	-1	validated	missense	c.881	p.N294T	0.999	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors	
SLC37A2	219855	genome.wustl.edu	37	11	124947362	124947362	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	124947362	124947362	G	C	SNP	SLC37A2	NM_198277	human	genbank	57_37b	+1	validated	missense	c.252	p.K84N	0.998	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors	
SMG1	23049	genome.wustl.edu	37	16	18872050	18872050	+	Silent	SNP	C	C	T	rs118049464	by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	18872050	18872050	C	T	SNP	SMG1	NM_015092	human	genbank	57_37b	-1	reviewed	silent	c.3744	p.Q1248	0.981	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-		
SPAG17	200162	genome.wustl.edu	37	1	118693217	118693217	+	Silent	SNP	T	T	C	rs1935992	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	118693217	118693217	T	C	SNP	SPAG17	NM_206996	human	genbank	57_37b	-1	validated	silent	c.264	p.S88	0.004	NULL	NULL	-		
STAT1	6772	genome.wustl.edu	37	2	191874683	191874684	+	In_Frame_Ins	INS	-	-	CCAGGC	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	191874683	191874684	-	CCAGGC	INS	STAT1	NM_007315	human	genbank	57_37b	-1	reviewed	in_frame_ins	c.47_46	p.16in_frame_insGL	1.000:1.000	superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int	superfamily_Transcription factor STAT-4 N-domain,HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_p53-like transcription factors,superfamily_SH2 domain,HMMPfam_SH2	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578246	7578247	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578246	7578247	-	A	INS	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.603_602	p.L201fs	0.000:0.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TRAPPC10	7109	genome.wustl.edu	37	21	45479068	45479068	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45479068	45479068	C	T	SNP	TRAPPC10	NM_003274	human	genbank	57_37b	+1	reviewed	nonsense	c.763	p.Q255*	1.000	NULL	PatternScan_AA_TRNA_LIGASE_I	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179443676	179443676	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179443676	179443676	C	T	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.60371	p.C20124Y	0.998	HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
TUG1	55000	genome.wustl.edu	37	22	31366675	31366675	+	RNA	SNP	G	G	T	rs886471	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	31366675	31366675	G	T	SNP	TUG1	NR_002323	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.910	-	-	-		
UGT2B28	54490	genome.wustl.edu	37	4	70288700	70288700	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	70288700	70288700	G	A	SNP	UGT2B28	ENST00000381079	human	ensembl	57_37b	+1	known	missense	c.1406	p.R469H	1.000	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors	
XKR4	114786	genome.wustl.edu	37	8	56435907	56435907	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	56435907	56435907	G	A	SNP	XKR4	NM_052898	human	genbank	57_37b	+1	provisional	silent	c.1074	p.R358	1.000	HMMPfam_XK-related	HMMPfam_XK-related	-	no_errors	
XPO4	64328	genome.wustl.edu	37	13	21382693	21382693	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	21382693	21382693	G	C	SNP	XPO4	NM_022459	human	genbank	57_37b	-1	validated	silent	c.1521	p.L507	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	
ZDHHC11B	653082	genome.wustl.edu	37	5	766939	766939	+	Silent	SNP	G	G	A	rs4957103	byCluster;by2Hit2Allele;byHapMap	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	766939	766939	G	A	SNP	ZDHHC11B	XM_926053	human	genbank	57_37b	-1	model	silent	c.96	p.N32	0.990	NULL	HMMPfam_zf-DHHC	-		
ZNF254	9534	genome.wustl.edu	37	19	24310770	24310770	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	24310770	24310770	C	G	SNP	ZNF254	NM_203282	human	genbank	57_37b	+1	validated	missense	c.1968	p.I656M	0.134	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF469	84627	genome.wustl.edu	37	16	88501728	88501728	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	88501728	88501728	G	C	SNP	ZNF469	NM_001127464	human	genbank	57_37b	+1	reviewed	missense	c.7766	p.R2589P	0.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors	
ZNF644	84146	genome.wustl.edu	37	1	91406655	91406655	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BG-01	TCGA-BH-A0BG-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	91406655	91406655	C	T	SNP	ZNF644	NM_201269	human	genbank	57_37b	-1	validated	missense	c.256	p.A86T	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
