Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCA9	10350	genome.wustl.edu	37	17	66982401	66982401	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	66982401	66982401	T	C	SNP	ABCA9	NM_080283	human	genbank	57_37b	-1	reviewed	missense	c.4112	p.N1371S	0.985	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-	no_errors	
ACSM3	6296	genome.wustl.edu	37	16	20788842	20788842	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	20788842	20788842	C	T	SNP	ACSM3	NM_005622	human	genbank	57_37b	+1	validated	missense	c.578	p.S193F	0.750	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors	
AKAP3	10566	genome.wustl.edu	37	12	4747364	4747364	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	4747364	4747364	T	G	SNP	AKAP3	NM_006422	human	genbank	57_37b	-1	reviewed	splice_site	c.1-2	e1-2	0.985	-	-	-	no_errors	
ALG5	29880	genome.wustl.edu	37	13	37569662	37569662	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	37569662	37569662	G	T	SNP	ALG5	NM_013338	human	genbank	57_37b	-1	reviewed	missense	c.138	p.F46L	0.974	NULL	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2	-	no_errors	
AMZ2	51321	genome.wustl.edu	37	17	66246405	66246405	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	66246405	66246405	A	G	SNP	AMZ2	NM_001033569	human	genbank	57_37b	+1	validated	missense	c.77	p.Y26C	0.993	NULL	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M54,PatternScan_ZINC_PROTEASE"	-	no_errors	
ANKRD20A4	728747	genome.wustl.edu	37	9	69385951	69385951	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	69385951	69385951	G	A	SNP	ANKRD20A4	NM_001098805	human	genbank	57_37b	+1	provisional	missense	c.388	p.D130N	0.161	superfamily_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors	
ATOH1	474	genome.wustl.edu	37	4	94750648	94750648	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	94750648	94750648	A	C	SNP	ATOH1	NM_005172	human	genbank	57_37b	+1	reviewed	missense	c.571	p.N191H	1.000	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors	
BCL9L	283149	genome.wustl.edu	37	11	118770742	118770742	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118770742	118770742	G	C	SNP	BCL9L	NM_182557	human	genbank	57_37b	-1	validated	missense	c.3290	p.P1097R	1.000	NULL	PatternScan_RIBOSOMAL_S6E	-	no_errors	
C19orf21	126353	genome.wustl.edu	37	19	757540	757540	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	757540	757540	G	A	SNP	C19orf21	NM_173481	human	genbank	57_37b	+1	predicted	silent	c.594	p.Q198	0.931	NULL	NULL	-	no_errors	
C5orf54	63920	genome.wustl.edu	37	5	159822112	159822112	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	159822112	159822112	C	T	SNP	C5orf54	NM_022090	human	genbank	57_37b	-1	validated	missense	c.386	p.G129E	1.000	NULL	NULL	-	no_errors	
C6orf138	442213	genome.wustl.edu	37	6	47976671	47976671	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	47976671	47976671	T	C	SNP	C6orf138	NM_001013732	human	genbank	57_37b	-1	validated	missense	c.555	p.I185M	1.000	HMMPfam_Patched,superfamily_SSF82866	HMMPfam_Patched,superfamily_SSF82866	-	no_errors	
C6orf170	221322	genome.wustl.edu	37	6	121481215	121481215	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	121481215	121481215	G	A	SNP	C6orf170	NM_152730	human	genbank	57_37b	-1	validated	missense	c.2714	p.S905L	1.000	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors	
CAMK2D	817	genome.wustl.edu	37	4	114438800	114438800	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	114438800	114438800	A	T	SNP	CAMK2D	NM_001221	human	genbank	57_37b	-1	reviewed	nonsense	c.615	p.Y205*	0.992	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMPfam_CaMKII_AD	-	no_errors	
CAMK2D	817	genome.wustl.edu	37	4	114438800	114438800	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	114438800	114438800	A	T	SNP	CAMK2D	NM_001221	human	genbank	57_37b	-1	reviewed	nonsense	c.615	p.Y205*	0.992	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMPfam_CaMKII_AD	-	no_errors	
CCDC110	256309	genome.wustl.edu	37	4	186379415	186379415	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	186379415	186379415	C	T	SNP	CCDC110	NM_152775	human	genbank	57_37b	-1	validated	missense	c.2326	p.D776N	0.801	NULL	NULL	-	no_errors	
CCDC27	148870	genome.wustl.edu	37	1	3672038	3672038	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	3672038	3672038	G	A	SNP	CCDC27	NM_152492	human	genbank	57_37b	+1	validated	missense	c.460	p.D154N	0.000	NULL	NULL	-	no_errors	
CKAP2	26586	genome.wustl.edu	37	13	53035596	53035596	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	53035596	53035596	C	A	SNP	CKAP2	NM_001098525	human	genbank	57_37b	+1	validated	missense	c.638	p.P213H	0.024	NULL	NULL	-	no_errors	
COL4A1	1282	genome.wustl.edu	37	13	110847369	110847369	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	110847369	110847369	C	A	SNP	COL4A1	NM_001845	human	genbank	57_37b	-1	reviewed	splice_site	c.1381+1	e22+1	1.000	-	-	-	no_errors	
CREB3L2	64764	genome.wustl.edu	37	7	137600703	137600703	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	137600703	137600703	G	C	SNP	CREB3L2	NM_194071	human	genbank	57_37b	-1	validated	missense	c.375	p.I125M	1.000	NULL	superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC	-	no_errors	
CYP2C8	1558	genome.wustl.edu	37	10	96797047	96797064	+	In_Frame_Del	DEL	TCCTGCACAAATTCGTTT	TCCTGCACAAATTCGTTT	-	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	TCCTGCACAAATTCGTTT	TCCTGCACAAATTCGTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	96797047	96797064	TCCTGCACAAATTCGTTT	-	DEL	CYP2C8	NM_000770	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1311_1294	p.KRICAG432in_frame_del	0.998:1.000:0.996:0.282:0.480:0.556:0.846:0.978:0.969:0.001:0.001:0.000:0.000:0.108:0.090:0.112:0.261:0.277	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	(deletion:cds_exon[96796885,96797066])	no_errors	
CYP2C8	1558	genome.wustl.edu	37	10	96797047	96797064	+	In_Frame_Del	DEL	TCCTGCACAAATTCGTTT	TCCTGCACAAATTCGTTT	-	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	TCCTGCACAAATTCGTTT	TCCTGCACAAATTCGTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	96797047	96797064	TCCTGCACAAATTCGTTT	-	DEL	CYP2C8	NM_000770	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1311_1294	p.KRICAG432in_frame_del	0.998:1.000:0.996:0.282:0.480:0.556:0.846:0.978:0.969:0.001:0.001:0.000:0.000:0.108:0.090:0.112:0.261:0.277	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	(deletion:cds_exon[96796885,96797066])	no_errors	
DEFB119	245932	genome.wustl.edu	37	20	29976953	29976953	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	29976953	29976953	G	A	SNP	DEFB119	NM_153323	human	genbank	57_37b	-1	validated	missense	c.142	p.R48W	0.428	NULL	NULL	-	no_errors	
EFHB	151651	genome.wustl.edu	37	3	19959819	19959819	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	19959819	19959819	C	T	SNP	EFHB	NM_144715	human	genbank	57_37b	-1	validated	missense	c.1082	p.R361Q	0.028	NULL	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors	
ERO1L	30001	genome.wustl.edu	37	14	53119001	53119001	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	53119001	53119001	T	C	SNP	ERO1L	NM_014584	human	genbank	57_37b	-1	provisional	missense	c.1081	p.N361D	1.000	superfamily_ERO1,HMMPfam_ERO1	superfamily_ERO1,HMMPfam_ERO1	-	no_errors	
EYA4	2070	genome.wustl.edu	37	6	133777745	133777745	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	133777745	133777745	C	T	SNP	EYA4	NM_004100	human	genbank	57_37b	+1	reviewed	missense	c.329	p.A110V	1.000	NULL	HMMPfam_Hydrolase	-	no_errors	
FBXO40	51725	genome.wustl.edu	37	3	121340395	121340395	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121340395	121340395	T	G	SNP	FBXO40	NM_016298	human	genbank	57_37b	+1	validated	missense	c.119	p.L40R	0.780	superfamily_TRAF domain-like	superfamily_TRAF domain-like,superfamily_F-box domain,HMMPfam_F-box	-	no_errors	
FBXO5	26271	genome.wustl.edu	37	6	153293436	153293436	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	153293436	153293436	T	G	SNP	FBXO5	NM_012177	human	genbank	57_37b	-1	reviewed	missense	c.1063	p.T355P	0.058	NULL	HMMPfam_F-box	-	no_errors	
FERD3L	222894	genome.wustl.edu	37	7	19184943	19184943	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	19184943	19184943	C	G	SNP	FERD3L	NM_152898	human	genbank	57_37b	-1	validated	missense	c.43	p.D15H	1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors	
FRMD4A	55691	genome.wustl.edu	37	10	13804668	13804668	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	13804668	13804668	C	A	SNP	FRMD4A	NM_018027	human	genbank	57_37b	-1	validated	missense	c.397	p.V133F	0.985	HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	superfamily_SSF54236,HMMSmart_B41,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C	-	no_errors	
FSCB	84075	genome.wustl.edu	37	14	44974189	44974189	+	Missense_Mutation	SNP	C	C	A	rs11621923	byCluster;byFrequency;byHapMap	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	44974189	44974189	C	A	SNP	FSCB	NM_032135	human	genbank	57_37b	-1	validated	missense	c.2002	p.A668S	0.000	NULL	NULL	-		
GLUD2	2747	genome.wustl.edu	37	X	120182736	120182736	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	120182736	120182736	A	G	SNP	GLUD2	NM_012084	human	genbank	57_37b	+1	reviewed	missense	c.1198	p.I400V	1.000	HMMPfam_ELFV_dehydrog,superfamily_NAD(P)-bd	superfamily_SSF53223,HMMPfam_ELFV_dehydrog_N,PatternScan_GLFV_DEHYDROGENASE,HMMPfam_ELFV_dehydrog,superfamily_NAD(P)-bd	-	no_errors	
GP6	51206	genome.wustl.edu	37	19	55539160	55539160	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55539160	55539160	T	A	SNP	GP6	NM_001083899	human	genbank	57_37b	-1	validated	silent	c.396	p.L132	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
GPAM	57678	genome.wustl.edu	37	10	113915699	113915699	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	113915699	113915699	G	T	SNP	GPAM	NM_020918	human	genbank	57_37b	-1	validated	missense	c.2234	p.P745H	0.989	NULL	superfamily_SSF69593,HMMPfam_Acyltransferase,HMMSmart_PlsC	-	no_errors	
GRIK3	2899	genome.wustl.edu	37	1	37307422	37307422	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	37307422	37307422	T	A	SNP	GRIK3	NM_000831	human	genbank	57_37b	-1	reviewed	missense	c.1445	p.E482V	1.000	HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd	superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,superfamily_SSF55620	-	no_errors	
GRLF1	2909	genome.wustl.edu	37	19	47503649	47503649	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47503649	47503649	C	A	SNP	GRLF1	NM_004491	human	genbank	57_37b	+1	reviewed	missense	c.4204	p.P1402T	1.000	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00441,HMMPfam_FF,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
HHAT	55733	genome.wustl.edu	37	1	210573999	210573999	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	210573999	210573999	A	C	SNP	HHAT	NM_001122834	human	genbank	57_37b	+1	validated	missense	c.461	p.E154A	0.994	HMMPfam_MBOAT	HMMPfam_MBOAT	-	no_errors	
ITGA11	22801	genome.wustl.edu	37	15	68643690	68643690	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	68643690	68643690	A	G	SNP	ITGA11	NM_001004439	human	genbank	57_37b	-1	reviewed	missense	c.800	p.I267T	1.000	superfamily_Integrin alpha N-terminal domain,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains	-	no_errors	
KCNA1	3736	genome.wustl.edu	37	12	5021590	5021590	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	5021590	5021590	C	T	SNP	KCNA1	NM_000217	human	genbank	57_37b	+1	reviewed	missense	c.1046	p.A349V	1.000	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	-	no_errors	
LAMC2	3918	genome.wustl.edu	37	1	183177174	183177174	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	183177174	183177174	C	T	SNP	LAMC2	NM_005562	human	genbank	57_37b	+1	reviewed	missense	c.238	p.R80C	0.991	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_1,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_EGF_2,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors	
LOC100287962	0	genome.wustl.edu	37	14	92413745	92413745	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	92413745	92413745	C	-	DEL	LOC100287962	XM_002343288	human	genbank	57_37b	+1	model	frame_shift_del	c.216	p.P73fs	0.999	NULL	NULL	(deletion:cds_exon[92413550,92413790])	no_errors	
LOC100289369	0	genome.wustl.edu	37	1	154918042	154918042	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154918042	154918042	G	A	SNP	LOC100289369	XM_002342138	human	genbank	57_37b	+1	model	missense	c.248	p.C83Y	0.919	NULL	NULL	-	no_errors	
LOC642661	642661	genome.wustl.edu	37	14	19719844	19719844	+	RNA	SNP	G	G	A	rs28594831	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	19719844	19719844	G	A	SNP	LOC642661	XR_016132	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.975	-	-	-		
MAPT	4137	genome.wustl.edu	37	17	44073950	44073950	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	44073950	44073950	G	A	SNP	MAPT	NM_001123066	human	genbank	57_37b	+1	reviewed	missense	c.1747	p.V583M	1.000	HMMPfam_Tubulin-binding	HMMPfam_Tubulin-binding,PatternScan_TAU_MAP	-	no_errors	
MBTPS1	8720	genome.wustl.edu	37	16	84088111	84088111	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84088111	84088111	C	A	SNP	MBTPS1	NM_003791	human	genbank	57_37b	-1	reviewed	missense	c.3102	p.R1034S	0.994	NULL	PatternScan_SUBTILASE_ASP,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER	-	no_errors	
MMP8	4317	genome.wustl.edu	37	11	102589268	102589268	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	102589268	102589268	G	T	SNP	MMP8	NM_002424	human	genbank	57_37b	-1	reviewed	missense	c.661	p.H221N	1.000	HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE	HMMPfam_PG_binding_1,superfamily_PGBD_like,PatternScan_CYSTEINE_SWITCH,HMMSmart_ZnMc,superfamily_SSF55486,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN	-	no_errors	
MST1P9	0	genome.wustl.edu	37	1	17085452	17085452	+	Silent	SNP	A	A	G	rs3981980	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17085452	17085452	A	G	SNP	MST1P9	ENST00000455405	human	ensembl	57_37b	-1	known	silent	c.1239	p.F413	0.995	HMMSmart_SM00130,HMMPfam_Kringle,superfamily_Kringle-like	HMMPfam_PAN_1,superfamily_Hairpin loop containing domain-like,HMMSmart_SM00473,HMMSmart_SM00130,HMMPfam_Kringle,superfamily_Kringle-like,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	-		
MUC16	94025	genome.wustl.edu	37	19	9019327	9019327	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9019327	9019327	G	C	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	silent	c.37560	p.S12520	0.091	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors	
NCRNA00201	0	genome.wustl.edu	37	1	245005085	245005085	+	RNA	SNP	G	G	C	rs12058012	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	245005085	245005085	G	C	SNP	NCRNA00201	NR_026778	human	genbank	57_37b	-1	predicted	rna	NULL	NULL	0.000	-	-	-		
NRP2	8828	genome.wustl.edu	37	2	206641245	206641246	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	206641245	206641246	-	A	INS	NRP2	NM_018534	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.2716_2717	p.C906fs	0.998:1.000	NULL	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00137,HMMPfam_MAM	-	no_errors	
NSL1	25936	genome.wustl.edu	37	1	212911865	212911865	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	212911865	212911865	G	C	SNP	NSL1	NM_015471	human	genbank	57_37b	-1	reviewed	missense	c.731	p.T244R	0.976	NULL	PatternScan_N6_MTASE,HMMPfam_Mis14	-	no_errors	
NUAK1	9891	genome.wustl.edu	37	12	106461617	106461617	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	106461617	106461617	A	T	SNP	NUAK1	NM_014840	human	genbank	57_37b	-1	validated	missense	c.949	p.C317S	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
ODZ4	26011	genome.wustl.edu	37	11	78423693	78423693	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	78423693	78423693	G	T	SNP	ODZ4	NM_001098816	human	genbank	57_37b	-1	validated	missense	c.3888	p.D1296E	1.000	superfamily_SSF101898,superfamily_TolB_C	HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF,HMMPfam_EGF_2,superfamily_SSF57196,superfamily_SSF101898,superfamily_TolB_C,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors	
OR10C1	442194	genome.wustl.edu	37	6	29407949	29407949	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29407949	29407949	G	A	SNP	OR10C1	NM_013941	human	genbank	57_37b	+1	provisional	missense	c.157	p.A53T	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR1L8	138881	genome.wustl.edu	37	9	125329851	125329851	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	125329851	125329851	C	A	SNP	OR1L8	NM_001004454	human	genbank	57_37b	-1	provisional	missense	c.906	p.R302S	0.147	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR4N2	390429	genome.wustl.edu	37	14	20296167	20296167	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20296167	20296167	T	A	SNP	OR4N2	NM_001004723	human	genbank	57_37b	+1	provisional	missense	c.560	p.L187Q	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR8U1	219417	genome.wustl.edu	37	11	56143625	56143625	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	56143625	56143625	C	A	SNP	OR8U1	NM_001005204	human	genbank	57_37b	+1	provisional	missense	c.526	p.H176N	0.074	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PAR5	0	genome.wustl.edu	37	15	25232023	25232026	+	RNA	DEL	GCAC	GCAC	-	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	GCAC	GCAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	25232023	25232026	GCAC	-	DEL	PAR5	NR_022008	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.002:0.001:0.000:0.000	-	-	(deletion:rna[25230007,25233379])	no_errors	
PDPK1	5170	genome.wustl.edu	37	16	2607730	2607730	+	Silent	SNP	C	C	T	rs61747742	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2607730	2607730	C	T	SNP	PDPK1	NM_002613	human	genbank	57_37b	+1	validated	silent	c.51	p.S17	0.982	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-		
PIGN	23556	genome.wustl.edu	37	18	59810563	59810563	+	Silent	SNP	A	A	G	rs34227891	byCluster;byFrequency;by1000genomes	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	59810563	59810563	A	G	SNP	PIGN	NM_012327	human	genbank	57_37b	-1	reviewed	silent	c.939	p.N313	0.145	superfamily_Alkaline_phosphatase_core	superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest,HMMPfam_PigN	-		
PMS2L11	0	genome.wustl.edu	37	7	76619625	76619625	+	RNA	SNP	C	C	T	rs2302541	byCluster;byFrequency	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	76619625	76619625	C	T	SNP	PMS2L11	NR_023383	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.024	-	-	-		
POU2F1	5451	genome.wustl.edu	37	1	167382293	167382293	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	167382293	167382293	C	A	SNP	POU2F1	NM_002697	human	genbank	57_37b	+1	provisional	silent	c.1863	p.T621	0.990	NULL	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors	
PRAMEF4	400735	genome.wustl.edu	37	1	12942113	12942113	+	Missense_Mutation	SNP	C	C	T	rs78698593	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	12942113	12942113	C	T	SNP	PRAMEF4	NM_001009611	human	genbank	57_37b	-1	validated	missense	c.437	p.R146Q	0.000	superfamily_SSF52047	superfamily_SSF52047	-		
PTCHD1	139411	genome.wustl.edu	37	X	23411647	23411647	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	23411647	23411647	T	A	SNP	PTCHD1	NM_173495	human	genbank	57_37b	+1	validated	missense	c.2012	p.L671H	1.000	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain	-	no_errors	
RANBP17	64901	genome.wustl.edu	37	5	170380678	170380678	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	170380678	170380678	G	A	SNP	RANBP17	NM_022897	human	genbank	57_37b	+1	provisional	missense	c.1546	p.D516N	1.000	NULL	superfamily_ARM repeat,HMMPfam_IBN_N	-	no_errors	
RASAL1	8437	genome.wustl.edu	37	12	113552621	113552621	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	113552621	113552621	C	G	SNP	RASAL1	NM_004658	human	genbank	57_37b	-1	reviewed	missense	c.1165	p.D389H	1.000	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP	HMMSmart_SM00239,HMMPfam_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00107,HMMPfam_BTK	-	no_errors	
RET	5979	genome.wustl.edu	37	10	43597801	43597801	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	43597801	43597801	C	A	SNP	RET	NM_020975	human	genbank	57_37b	+1	reviewed	missense	c.349	p.P117T	0.993	NULL	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
RGS4	5999	genome.wustl.edu	37	1	163044344	163044344	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	163044344	163044344	T	A	SNP	RGS4	NM_001102445	human	genbank	57_37b	+1	reviewed	nonsense	c.903	p.C301*	0.987	NULL	superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS	-	no_errors	
RGS4	5999	genome.wustl.edu	37	1	163044344	163044344	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	163044344	163044344	T	A	SNP	RGS4	NM_001102445	human	genbank	57_37b	+1	reviewed	nonsense	c.903	p.C301*	0.987	NULL	superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS	-	no_errors	
SEMA5A	9037	genome.wustl.edu	37	5	9197331	9197331	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	9197331	9197331	T	A	SNP	SEMA5A	NM_003966	human	genbank	57_37b	-1	reviewed	missense	c.1017	p.E339D	1.000	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1	-	no_errors	
SMYD4	114826	genome.wustl.edu	37	17	1703856	1703856	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1703856	1703856	G	C	SNP	SMYD4	NM_052928	human	genbank	57_37b	-1	validated	missense	c.832	p.H278D	0.000	superfamily_SET domain	superfamily_TPR-like,superfamily_SET domain,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors	
SORBS3	10174	genome.wustl.edu	37	8	22419432	22419432	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	22419432	22419432	C	A	SNP	SORBS3	NM_005775	human	genbank	57_37b	+1	validated	missense	c.572	p.T191K	0.000	NULL	HMMSmart_SM00459,HMMPfam_Sorb,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
STX11	8676	genome.wustl.edu	37	6	144507849	144507849	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	144507849	144507849	C	A	SNP	STX11	NM_003764	human	genbank	57_37b	+1	reviewed	missense	c.85	p.P29T	0.000	NULL	HMMPfam_Syntaxin,HMMSmart_SynN,superfamily_t-snare,HMMSmart_t_SNARE,HMMPfam_SNARE,PatternScan_SYNTAXIN	-	no_errors	
TACC1	6867	genome.wustl.edu	37	8	38677317	38677317	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	38677317	38677317	C	A	SNP	TACC1	NM_006283	human	genbank	57_37b	+1	reviewed	silent	c.555	p.S185	0.001	NULL	HMMPfam_TACC	-	no_errors	
TAF1L	138474	genome.wustl.edu	37	9	32633233	32633233	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	32633233	32633233	A	T	SNP	TAF1L	NM_153809	human	genbank	57_37b	-1	provisional	missense	c.2345	p.L782Q	1.000	NULL	HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors	
THOC5	8563	genome.wustl.edu	37	22	29945112	29945112	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	29945112	29945112	G	C	SNP	THOC5	NM_001002877	human	genbank	57_37b	-1	validated	missense	c.25	p.R9G	1.000	NULL	HMMPfam_FimP	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7579359	7579359	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7579359	7579359	G	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.328	p.R110fs	0.028	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7579312,7579590])	no_errors	
TP53	7157	genome.wustl.edu	37	17	7579359	7579359	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7579359	7579359	G	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.328	p.R110fs	0.028	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7579312,7579590])	no_errors	
TRAPPC10	7109	genome.wustl.edu	37	21	45499985	45499985	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45499985	45499985	C	T	SNP	TRAPPC10	NM_003274	human	genbank	57_37b	+1	reviewed	missense	c.1700	p.A567V	1.000	NULL	PatternScan_AA_TRNA_LIGASE_I	-	no_errors	
TRPC4AP	26133	genome.wustl.edu	37	20	33600860	33600860	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	33600860	33600860	A	T	SNP	TRPC4AP	NM_015638	human	genbank	57_37b	-1	validated	missense	c.1360	p.L454M	1.000	NULL	NULL	-	no_errors	
TTLL6	284076	genome.wustl.edu	37	17	46862448	46862448	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	46862448	46862448	G	T	SNP	TTLL6	NM_001130918	human	genbank	57_37b	-1	validated	missense	c.1877	p.A626D	0.001	NULL	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors	
UBQLN4	56893	genome.wustl.edu	37	1	156011319	156011319	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156011319	156011319	A	G	SNP	UBQLN4	NM_020131	human	genbank	57_37b	-1	provisional	missense	c.1610	p.M537T	1.000	NULL	PatternScan_UBIQUITIN_1,superfamily_SSF54236,HMMSmart_UBQ,HMMPfam_ubiquitin,HMMSmart_STI1,superfamily_UBA_like,HMMPfam_UBA,HMMSmart_UBA	-	no_errors	
USP1	7398	genome.wustl.edu	37	1	62916175	62916175	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	62916175	62916175	G	T	SNP	USP1	NM_001017415	human	genbank	57_37b	+1	reviewed	missense	c.1881	p.L627F	0.762	superfamily_SSF54001,HMMPfam_UCH	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
VIT	5212	genome.wustl.edu	37	2	36994370	36994370	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	36994370	36994370	T	C	SNP	VIT	NM_053276	human	genbank	57_37b	+1	provisional	silent	c.621	p.A207	0.000	NULL	superfamily_LCCL,HMMSmart_LCCL,HMMPfam_LCCL,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	-	no_errors	
ZNF397	84307	genome.wustl.edu	37	18	32822449	32822449	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	32822449	32822449	T	A	SNP	ZNF397	NM_001135178	human	genbank	57_37b	+1	reviewed	silent	c.15	p.S5	0.440	NULL	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF540	163255	genome.wustl.edu	37	19	38091932	38091932	+	Missense_Mutation	SNP	A	A	T	rs1975937	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-BH-A0C0-01	TCGA-BH-A0C0-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38091932	38091932	A	T	SNP	ZNF540	NM_152606	human	genbank	57_37b	+1	validated	missense	c.158	p.D53V	0.442	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-		
