Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAD2	161931	genome.wustl.edu	37	16	84229436	84229436	+	Silent	SNP	G	A	A	rs62049905	byCluster;by1000genomes	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84229436	84229436	G	A	SNP	ADAD2	NM_139174	human	genbank	57_37b	+1	validated	silent	c.1314	p.S438	0.000	HMMPfam_A_deamin	HMMPfam_dsrm,HMMPfam_A_deamin	-		
BACH1	571	genome.wustl.edu	37	21	30699316	30699316	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	30699316	30699316	C	T	SNP	BACH1	NM_001186	human	genbank	57_37b	+1	reviewed	nonsense	c.1171	p.R391*	0.901	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1	-	no_errors	
C8orf71	26138	genome.wustl.edu	37	8	58197061	58197061	+	RNA	SNP	C	C	A	rs56130194	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	58197061	58197061	C	A	SNP	C8orf71	NR_026772	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.874	-	-	-		
CCDC40	55036	genome.wustl.edu	37	17	78071052	78071052	+	Silent	SNP	T	T	C	rs12952612	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	78071052	78071052	T	C	SNP	CCDC40	NM_017950	human	genbank	57_37b	+1	validated	silent	c.3030	p.D1010	0.635	NULL	HMMPfam_BRE1	-		
CHST11	50515	genome.wustl.edu	37	12	105150939	105150939	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	105150939	105150939	C	T	SNP	CHST11	NM_018413	human	genbank	57_37b	+1	provisional	silent	c.417	p.T139	0.051	HMMPfam_Sulfotransfer_2	HMMPfam_Sulfotransfer_2	-	no_errors	
CROCC	9696	genome.wustl.edu	37	1	17265416	17265416	+	Missense_Mutation	SNP	G	G	T	rs114323849	by1000genomes	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17265416	17265416	G	T	SNP	CROCC	NM_014675	human	genbank	57_37b	+1	validated	missense	c.1387	p.D463Y	0.576	NULL	superfamily_Prefoldin	-		
CROCCL1	84809	genome.wustl.edu	37	1	16954981	16954981	+	RNA	SNP	C	C	A	rs10157498	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16954981	16954981	C	A	SNP	CROCCL1	NR_026752	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.724	-	-	-		
DOCK2	1794	genome.wustl.edu	37	5	169127104	169127104	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	169127104	169127104	G	A	SNP	DOCK2	NM_004946	human	genbank	57_37b	+1	validated	missense	c.1219	p.V407M	1.000	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Cytochrome c	-	no_errors	
ENSG00000235531	0	genome.wustl.edu	37	8	72965200	72965201	+	RNA	INS	-	-	TG	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	72965200	72965201	-	TG	INS	ENSG00000235531	ENST00000457356	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.008:0.162	-	-	-	no_errors	
ENSG00000245283	0	genome.wustl.edu	37	1	230783268	230783268	+	RNA	SNP	A	C	C	rs12034415	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	230783268	230783268	A	C	SNP	ENSG00000245283	ENST00000500580	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.256	-	-	-		
ENSG00000246368	0	genome.wustl.edu	37	1	205274174	205274174	+	RNA	SNP	A	A	G	rs10793728	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205274174	205274174	A	G	SNP	ENSG00000246368	ENST00000499717	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000247765	0	genome.wustl.edu	37	15	21941688	21941688	+	RNA	SNP	G	G	A	rs4984119	byCluster;by2Hit2Allele	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21941688	21941688	G	A	SNP	ENSG00000247765	ENST00000500487	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.000	-	-	-		
ENTHD1	150350	genome.wustl.edu	37	22	40161426	40161426	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	40161426	40161426	C	A	SNP	ENTHD1	NM_152512	human	genbank	57_37b	-1	provisional	nonsense	c.1021	p.E341*	0.990	NULL	superfamily_ENTH/VHS domain,HMMPfam_ENTH,HMMSmart_SM00273	-	no_errors	
FCGBP	8857	genome.wustl.edu	37	19	40408747	40408747	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40408747	40408747	C	T	SNP	FCGBP	NM_003890	human	genbank	57_37b	-1	validated	silent	c.4092	p.L1364	0.827	HMMSmart_VWD,HMMPfam_VWD	HMMSmart_FOLN,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL,HMMPfam_TIL_assoc,HMMSmart_VWC	-	no_errors	
FNDC3B	64778	genome.wustl.edu	37	3	171851264	171851264	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	171851264	171851264	A	G	SNP	FNDC3B	NM_001135095	human	genbank	57_37b	+1	validated	missense	c.115	p.I39V	1.000	NULL	superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_HEMATOPO_REC_L_F2	-	no_errors	
FOXD3	27022	genome.wustl.edu	37	1	63789206	63789206	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	63789206	63789206	G	A	SNP	FOXD3	NM_012183	human	genbank	57_37b	+1	reviewed	silent	c.477	p.Q159	1.000	HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head	HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2	-	no_errors	
ITGA2	3673	genome.wustl.edu	37	5	52356790	52356790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	52356790	52356790	C	T	SNP	ITGA2	NM_002203	human	genbank	57_37b	+1	reviewed	missense	c.1372	p.R458W	0.995	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors	
KCNJ12	3768	genome.wustl.edu	37	17	21319230	21319230	+	Missense_Mutation	SNP	G	G	C	rs1657742	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	21319230	21319230	G	C	SNP	KCNJ12	NM_021012	human	genbank	57_37b	+1	validated	missense	c.576	p.Q192H	1.000	HMMPfam_IRK,superfamily_Ig_E-set	HMMPfam_IRK_N,superfamily_SSF81324,HMMPfam_IRK,superfamily_Ig_E-set	-		
KPRP	448834	genome.wustl.edu	37	1	152732639	152732639	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152732639	152732639	G	A	SNP	KPRP	NM_001025231	human	genbank	57_37b	+1	provisional	missense	c.575	p.G192D	0.000	NULL	NULL	-	no_errors	
LINGO1	84894	genome.wustl.edu	37	15	77907821	77907821	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	77907821	77907821	C	T	SNP	LINGO1	NM_032808	human	genbank	57_37b	-1	validated	missense	c.428	p.S143N	1.000	superfamily_L domain-like,HMMSmart_SM00369	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors	
LOC100292423	0	genome.wustl.edu	37	2	8687368	8687368	+	Silent	SNP	G	A	A	rs7595153	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	8687368	8687368	G	A	SNP	LOC100292423	XM_002345563	human	genbank	57_37b	-1	model	silent	c.210	p.H70	0.001	NULL	NULL	-		
MBD1	4152	genome.wustl.edu	37	18	47801800	47801800	+	Silent	SNP	G	G	A	rs140690	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	47801800	47801800	G	A	SNP	MBD1	ENST00000424334	human	ensembl	57_37b	-1	known	silent	c.885	p.R295	0.939	NULL	HMMPfam_MBD,superfamily_DNA-binding_integrase-type,HMMSmart_MBD,HMMPfam_zf-CXXC	-		
NDN	4692	genome.wustl.edu	37	15	23931940	23931940	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23931940	23931940	C	T	SNP	NDN	NM_002487	human	genbank	57_37b	-1	reviewed	missense	c.425	p.R142H	0.982	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors	
OSBPL5	114879	genome.wustl.edu	37	11	3141744	3141744	+	Silent	SNP	C	C	T	rs34950527	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	3141744	3141744	C	T	SNP	OSBPL5	NM_020896	human	genbank	57_37b	-1	reviewed	silent	c.513	p.L171	0.999	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-		
PLEC	0	genome.wustl.edu	37	8	145001190	145001190	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145001190	145001190	G	A	SNP	PLEC	NM_201380	human	genbank	57_37b	-1	reviewed	silent	c.4311	p.A1437	0.996	superfamily_Spectrin repeat,HMMSmart_SM00150	HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	no_errors	
POLD2	5425	genome.wustl.edu	37	7	44156512	44156512	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44156512	44156512	G	A	SNP	POLD2	NM_001127218	human	genbank	57_37b	-1	validated	silent	c.684	p.D228	0.137	HMMPfam_DNA_pol_E_B	HMMPfam_DNA_pol_E_B	-	no_errors	
POLR2J4	84820	genome.wustl.edu	37	7	44056086	44056086	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44056086	44056086	G	A	SNP	POLR2J4	ENST00000419923	human	ensembl	57_37b	-1	known	missense	c.5	p.P2L	0.997	NULL	NULL	-	no_errors	
RAI14	26064	genome.wustl.edu	37	5	34812309	34812309	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	34812309	34812309	A	C	SNP	RAI14	NM_001145525	human	genbank	57_37b	+1	validated	missense	c.770	p.K257T	1.000	superfamily_ANK	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	-	no_errors	
SIX5	147912	genome.wustl.edu	37	19	46268902	46268902	+	Missense_Mutation	SNP	C	C	T	rs2341097	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46268902	46268902	C	T	SNP	SIX5	NM_175875	human	genbank	57_37b	-1	reviewed	missense	c.2077	p.V693M	0.386	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-		
SMCHD1	23347	genome.wustl.edu	37	18	2747542	2747542	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	2747542	2747542	G	T	SNP	SMCHD1	NM_015295	human	genbank	57_37b	+1	validated	missense	c.3824	p.R1275I	1.000	NULL	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,superfamily_Smc hinge domain,HMMPfam_SMC_hinge	-	no_errors	
TMC4	147798	genome.wustl.edu	37	19	54676772	54676772	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54676772	54676772	G	A	SNP	TMC4	NM_001145303	human	genbank	57_37b	-1	validated	missense	c.41	p.S14F	0.291	NULL	HMMPfam_TMC	-	no_errors	
ZBTB43	23099	genome.wustl.edu	37	9	129595094	129595094	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HO-01	TCGA-BH-A0HO-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	129595094	129595094	T	C	SNP	ZBTB43	NM_001135776	human	genbank	57_37b	+1	validated	silent	c.306	p.S102	1.000	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
