Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCB11	8647	genome.wustl.edu	37	2	169842673	169842673	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	169842673	169842673	C	T	SNP	ABCB11	NM_003742	human	genbank	57_37b	-1	reviewed	missense	c.1030	p.G344S	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ACCN4	55515	genome.wustl.edu	37	2	220402756	220402756	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220402756	220402756	T	C	SNP	ACCN4	NM_018674	human	genbank	57_37b	+1	reviewed	silent	c.1989	p.D663	1.000	NULL	HMMPfam_ASC,PatternScan_ASC	-	no_errors	
AKAP13	11214	genome.wustl.edu	37	15	86123003	86123003	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	86123003	86123003	G	A	SNP	AKAP13	NM_006738	human	genbank	57_37b	+1	reviewed	silent	c.1704	p.T568	0.000	NULL	superfamily_ANK,HMMPfam_RII_binding_1,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,PatternScan_EF_HAND_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,HMMPfam_PH,superfamily_SSF50729,HMMSmart_PH	-	no_errors	
C10orf40	0	genome.wustl.edu	37	10	61719385	61719385	+	RNA	SNP	T	G	G	rs12776262	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	61719385	61719385	T	G	SNP	C10orf40	NR_024340	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
C5orf37	134359	genome.wustl.edu	37	5	74998503	74998503	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	74998503	74998503	C	A	SNP	C5orf37	NM_001099271	human	genbank	57_37b	-1	validated	missense	c.440	p.S147I	0.000	NULL	NULL	-	no_errors	
CAMTA2	23125	genome.wustl.edu	37	17	4876086	4876086	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4876086	4876086	T	G	SNP	CAMTA2	NM_015099	human	genbank	57_37b	-1	validated	silent	c.2481	p.P827	0.960	superfamily_Ankyrin repeat	HMMPfam_CG-1,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Ank,superfamily_Ankyrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IQ	-	no_errors	
CD209	30835	genome.wustl.edu	37	19	7807832	7807832	+	RNA	SNP	G	G	T	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	7807832	7807832	G	T	SNP	CD209	NR_026692	human	genbank	57_37b	-1	reviewed	rna	NULL	NULL	0.002	-	-	-	no_errors	
CHRNA1	1134	genome.wustl.edu	37	2	175624061	175624061	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	175624061	175624061	G	T	SNP	CHRNA1	NM_001039523	human	genbank	57_37b	-1	reviewed	missense	c.232	p.Q78K	1.000	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors	
COL19A1	1310	genome.wustl.edu	37	6	70639432	70639432	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	70639432	70639432	G	A	SNP	COL19A1	NM_001858	human	genbank	57_37b	+1	reviewed	missense	c.506	p.R169H	1.000	HMMSmart_TSPN,superfamily_ConA_like_lec_gl	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Collagen	-	no_errors	
CXorf40A	91966	genome.wustl.edu	37	X	148627391	148627391	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	148627391	148627391	T	G	SNP	CXorf40A	NM_178124	human	genbank	57_37b	+1	validated	missense	c.215	p.L72R	0.008	NULL	NULL	-	no_errors	
CYP4V2	285440	genome.wustl.edu	37	4	187113181	187113185	+	Frame_Shift_Del	DEL	GGACG	GGACG	-	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	GGACG	GGACG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	187113181	187113185	GGACG	-	DEL	CYP4V2	NM_207352	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.204_208	p.D69fs	0.000:0.000:0.000:0.000:0.000	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	(deletion:cds_exon[187112978,187113191])	no_errors	
DCHS2	54798	genome.wustl.edu	37	4	155180776	155180776	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	155180776	155180776	T	A	SNP	DCHS2	NM_017639	human	genbank	57_37b	-1	validated	missense	c.5345	p.D1782V	1.000	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors	
DHX37	57647	genome.wustl.edu	37	12	125465270	125465272	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	125465270	125465272	CTC	-	DEL	DHX37	NM_032656	human	genbank	57_37b	-1	reviewed	in_frame_del	c.504_502	p.E168in_frame_del	0.904:0.904:0.905	NULL	PatternScan_DEAH_ATP_HELICASE,HMMSmart_DEXDc,superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	(deletion:cds_exon[125465036,125465384])	no_errors	
EFS	10278	genome.wustl.edu	37	14	23829164	23829164	+	Missense_Mutation	SNP	G	G	A	rs2231805	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23829164	23829164	G	A	SNP	EFS	NM_005864	human	genbank	57_37b	-1	reviewed	missense	c.523	p.R175W	0.009	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-		
EIF5B	9669	genome.wustl.edu	37	2	99993052	99993052	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	99993052	99993052	C	T	SNP	EIF5B	NM_015904	human	genbank	57_37b	+1	reviewed	missense	c.1795	p.R599W	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,HMMPfam_GTP_EFTU_D2,superfamily_Initiation factor IF2/eIF5b domain 3,superfamily_Translation proteins	-	no_errors	
ENSG00000204597	0	genome.wustl.edu	37	19	53716460	53716460	+	Silent	SNP	A	A	G	rs10853859	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53716460	53716460	A	G	SNP	ENSG00000204597	ENST00000344759	human	ensembl	57_37b	+1	known	silent	c.222	p.S74	0.009	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-		
ENSG00000226214	0	genome.wustl.edu	37	17	1656215	1656215	+	Silent	SNP	G	A	A	rs736060	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1656215	1656215	G	A	SNP	ENSG00000226214	ENST00000458116	human	ensembl	57_37b	-1	known	silent	c.558	p.P186	0.001	NULL	NULL	-		
ENSG00000243451	0	genome.wustl.edu	37	1	237766311	237766311	+	RNA	SNP	C	C	T	rs17638846	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237766311	237766311	C	T	SNP	ENSG00000243451	ENST00000476674	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.014	-	-	-		
ENSG00000245326	0	genome.wustl.edu	37	22	36634217	36634217	+	RNA	SNP	T	C	C	rs762965	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	36634217	36634217	T	C	SNP	ENSG00000245326	ENST00000502139	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ENSG00000246194	0	genome.wustl.edu	37	3	44543030	44543030	+	RNA	SNP	C	T	T	rs12108134	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	44543030	44543030	C	T	SNP	ENSG00000246194	ENST00000500798	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-		
ENSG00000247170	0	genome.wustl.edu	37	10	74767777	74767778	+	RNA	INS	-	-	TACA	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	74767777	74767778	-	TACA	INS	ENSG00000247170	ENST00000502140	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.299:0.381	-	-	-	no_errors	
ENSG00000247300	0	genome.wustl.edu	37	13	36049080	36049080	+	RNA	SNP	T	G	G	rs9565317	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	36049080	36049080	T	G	SNP	ENSG00000247300	ENST00000501672	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.995	-	-	-		
ENSG00000247765	0	genome.wustl.edu	37	15	21941718	21941718	+	RNA	SNP	C	C	G	rs1568351	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21941718	21941718	C	G	SNP	ENSG00000247765	ENST00000500487	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.008	-	-	-		
ENSG00000247788	0	genome.wustl.edu	37	20	36477379	36477379	+	RNA	SNP	C	C	G	rs6512730	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	36477379	36477379	C	G	SNP	ENSG00000247788	ENST00000501904	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.064	-	-	-		
FLJ42393	401105	genome.wustl.edu	37	3	187896783	187896784	+	RNA	DEL	AG	AG	-	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	187896783	187896784	AG	-	DEL	FLJ42393	NR_024413	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.003:0.002	-	-	(deletion:rna[187896331,187898596])	no_errors	
FMN2	56776	genome.wustl.edu	37	1	240371704	240371704	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	240371704	240371704	C	A	SNP	FMN2	NM_020066	human	genbank	57_37b	+1	validated	missense	c.3592	p.P1198T	1.000	HMMSmart_FH2,HMMPfam_Drf_FH1	HMMSmart_FH2,HMMPfam_Drf_FH1,superfamily_FH2_actin_bd,HMMPfam_FH2	-	no_errors	
GOLGA6L1	0	genome.wustl.edu	37	15	22742829	22742829	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	22742829	22742829	T	G	SNP	GOLGA6L1	NM_001001413	human	genbank	57_37b	+1	provisional	missense	c.1214	p.I405R	0.161	NULL	NULL	-	no_errors	
GPKOW	27238	genome.wustl.edu	37	X	48972279	48972279	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48972279	48972279	T	C	SNP	GPKOW	NM_015698	human	genbank	57_37b	-1	provisional	missense	c.1106	p.N369S	0.863	NULL	HMMSmart_G_patch,HMMPfam_G-patch,HMMSmart_KOW,HMMPfam_KOW	-	no_errors	
GPRIN2	9721	genome.wustl.edu	37	10	46999863	46999863	+	Missense_Mutation	SNP	C	C	G	rs4445576	byCluster;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	46999863	46999863	C	G	SNP	GPRIN2	NM_014696	human	genbank	57_37b	+1	validated	missense	c.983	p.S328C	0.016	NULL	NULL	-		
HLA-DMA	3108	genome.wustl.edu	37	6	32917498	32917498	+	Missense_Mutation	SNP	C	G	G	rs6926628	byCluster;byFrequency	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32917498	32917498	C	G	SNP	HLA-DMA	NM_006120	human	genbank	57_37b	-1	reviewed	missense	c.542	p.G181A	0.998	superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407	superfamily_MHC antigen-recognition domain,HMMPfam_MHC_II_alpha,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-		
HSPA5	3309	genome.wustl.edu	37	9	128001807	128001807	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	128001807	128001807	G	A	SNP	HSPA5	NM_005347	human	genbank	57_37b	-1	validated	silent	c.498	p.T166	0.959	superfamily_Actin-like ATPase domain,HMMPfam_HSP70	superfamily_Actin-like ATPase domain,HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain	-	no_errors	
HSPC157	0	genome.wustl.edu	37	1	22352108	22352108	+	RNA	SNP	C	T	T	rs11801382	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	22352108	22352108	C	T	SNP	HSPC157	NR_023919	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.075	-	-	-		
INSL5	10022	genome.wustl.edu	37	1	67266829	67266829	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	67266829	67266829	C	A	SNP	INSL5	NM_005478	human	genbank	57_37b	-1	reviewed	missense	c.76	p.V26L	0.028	superfamily_Insulin-like,HMMSmart_IlGF	superfamily_Insulin-like,HMMSmart_IlGF,PatternScan_INSULIN	-	no_errors	
LOC100128889	0	genome.wustl.edu	37	1	31061424	31061424	+	RNA	SNP	G	A	A	rs611112	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	31061424	31061424	G	A	SNP	LOC100128889	XR_039661	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.008	-	-	-		
LOC100190940	0	genome.wustl.edu	37	12	130518432	130518432	+	RNA	SNP	A	G	G	rs1696461	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	130518432	130518432	A	G	SNP	LOC100190940	NR_024457	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.002	-	-	-		
LOC100287206	0	genome.wustl.edu	37	20	47244523	47244523	+	Missense_Mutation	SNP	A	A	G	rs8121156	byCluster;by2Hit2Allele;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47244523	47244523	A	G	SNP	LOC100287206	XM_002343709	human	genbank	57_37b	+1	model	missense	c.112	p.S38G	0.000	NULL	NULL	-		
LOC100291100	0	genome.wustl.edu	37	17	3793843	3793843	+	Missense_Mutation	SNP	T	C	C	rs11657386	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	3793843	3793843	T	C	SNP	LOC100291100	XM_002347766	human	genbank	57_37b	+1	model	missense	c.502	p.C168R	0.003	NULL	NULL	-		
LOC100291231	0	genome.wustl.edu	37	3	9194282	9194282	+	RNA	SNP	T	C	C	rs2675185	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	9194282	9194282	T	C	SNP	LOC100291231	XR_079140	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.000	-	-	-		
LOC285401	0	genome.wustl.edu	37	3	63110056	63110056	+	RNA	SNP	C	A	A	rs1374690	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	63110056	63110056	C	A	SNP	LOC285401	NR_027104	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.000	-	-	-		
LOC442421	442421	genome.wustl.edu	37	9	66501003	66501003	+	RNA	SNP	G	C	C	rs2818647	byCluster;byFrequency;bySubmitter;by2Hit2Allele	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	66501003	66501003	G	C	SNP	LOC442421	NR_024496	human	genbank	57_37b	+1	validated	rna	NULL	NULL	1.000	-	-	-		
MDN1	23195	genome.wustl.edu	37	6	90402292	90402292	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90402292	90402292	C	G	SNP	MDN1	NM_014611	human	genbank	57_37b	-1	provisional	missense	c.10457	p.G3486A	0.234	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_vWA-like,HMMSmart_SM00327	-	no_errors	
MUC2	4583	genome.wustl.edu	37	11	1090919	1090919	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1090919	1090919	A	C	SNP	MUC2	NM_002457	human	genbank	57_37b	+1	reviewed	missense	c.3814	p.T1272P	0.002	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMSmart_SM00214,PatternScan_VWFC_1,PatternScan_EGF_1,HMMPfam_VWC,HMMPfam_Cys_knot,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors	
MYH8	4626	genome.wustl.edu	37	17	10303934	10303934	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10303934	10303934	G	A	SNP	MYH8	NM_002472	human	genbank	57_37b	-1	reviewed	missense	c.3508	p.R1170W	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors	
NPBWR2	2832	genome.wustl.edu	37	20	62737568	62737568	+	Missense_Mutation	SNP	T	C	C	rs4809401	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62737568	62737568	T	C	SNP	NPBWR2	NM_005286	human	genbank	57_37b	-1	reviewed	missense	c.617	p.Q206R	0.930	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
NR4A3	8013	genome.wustl.edu	37	9	102626006	102626006	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	102626006	102626006	G	A	SNP	NR4A3	NM_173200	human	genbank	57_37b	+1	reviewed	missense	c.1771	p.E591K	0.977	superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors	
OR5AZ1P	0	genome.wustl.edu	37	11	57684949	57684949	+	Missense_Mutation	SNP	C	C	A	rs615133	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	57684949	57684949	C	A	SNP	OR5AZ1P	ENST00000319748	human	ensembl	57_37b	-1	known	missense	c.674	p.S225I	0.025	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-		
OR6P1	0	genome.wustl.edu	37	1	158532693	158532693	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158532693	158532693	G	C	SNP	OR6P1	ENST00000334632	human	ensembl	57_37b	-1	known	silent	c.702	p.R234	0.006	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178916929	178916937	+	In_Frame_Del	DEL	GGCAACCGT	GGCAACCGT	-	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	GGCAACCGT	GGCAACCGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178916929	178916937	GGCAACCGT	-	DEL	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	in_frame_del	c.316_324	p.GNR106in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	(deletion:cds_exon[178916614,178916965])	no_errors	
PIWIL1	9271	genome.wustl.edu	37	12	130827144	130827144	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	130827144	130827144	G	A	SNP	PIWIL1	NM_004764	human	genbank	57_37b	+1	reviewed	missense	c.8	p.G3E	1.000	NULL	superfamily_PAZ domain,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors	
PKD1	5310	genome.wustl.edu	37	16	2162839	2162839	+	Silent	SNP	T	T	C	rs2099534	byCluster;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2162839	2162839	T	C	SNP	PKD1	NM_001009944	human	genbank	57_37b	-1	reviewed	silent	c.3111	p.L1037	0.723	HMMSmart_SM00089,HMMPfam_PKD,superfamily_PKD domain	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,HMMSmart_SM00321,HMMPfam_WSC,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,HMMPfam_REJ,HMMPfam_GPS,HMMSmart_SM00303,HMMSmart_SM00308,HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel	-		
PLA2G4F	255189	genome.wustl.edu	37	15	42439944	42439944	+	Missense_Mutation	SNP	A	A	C	rs79576717	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42439944	42439944	A	C	SNP	PLA2G4F	NM_213600	human	genbank	57_37b	-1	validated	missense	c.1076	p.V359G	0.997	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B	-		
PLXNA1	5361	genome.wustl.edu	37	3	126708453	126708453	+	Silent	SNP	T	T	C	rs6773789	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	126708453	126708453	T	C	SNP	PLXNA1	NM_032242	human	genbank	57_37b	+1	validated	silent	c.948	p.T316	0.079	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-		
PPP1R3E	90673	genome.wustl.edu	37	14	23766591	23766591	+	RNA	SNP	G	A	A	rs1884056	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23766591	23766591	G	A	SNP	PPP1R3E	NR_026862	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
PRAME	23532	genome.wustl.edu	37	22	22899234	22899234	+	Missense_Mutation	SNP	A	G	G	rs2266988	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	22899234	22899234	A	G	SNP	PRAME	NM_006115	human	genbank	57_37b	-1	reviewed	missense	c.19	p.W7R	0.411	NULL	superfamily_RNI-like	-		
RIF1	55183	genome.wustl.edu	37	2	152320145	152320145	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152320145	152320145	A	T	SNP	RIF1	NM_018151	human	genbank	57_37b	+1	validated	missense	c.4111	p.N1371Y	0.024	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
RP1L1	94137	genome.wustl.edu	37	8	10466220	10466220	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	10466220	10466220	G	T	SNP	RP1L1	NM_178857	human	genbank	57_37b	-1	validated	silent	c.5388	p.G1796	0.000	HMMPfam_S-antigen	superfamily_SSF89837,HMMPfam_DCX,HMMPfam_S-antigen	-	no_errors	
SERPINA1	5265	genome.wustl.edu	37	14	94845800	94845800	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	94845800	94845800	C	T	SNP	SERPINA1	NM_000295	human	genbank	57_37b	-1	reviewed	splice_site	c.1065+1	e3+1	1.000	-	-	-	no_errors	
SPATA22	84690	genome.wustl.edu	37	17	3346557	3346557	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	3346557	3346557	C	A	SNP	SPATA22	NM_032598	human	genbank	57_37b	-1	validated	missense	c.811	p.D271Y	0.994	NULL	NULL	-	no_errors	
TADA2B	93624	genome.wustl.edu	37	4	7056249	7056260	+	In_Frame_Del	DEL	TGAAGCGCAAGA	TGAAGCGCAAGA	-	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	TGAAGCGCAAGA	TGAAGCGCAAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	7056249	7056260	TGAAGCGCAAGA	-	DEL	TADA2B	NM_152293	human	genbank	57_37b	+1	validated	in_frame_del	c.731_742	p.KRKI245in_frame_del	0.000:0.003:0.266:0.587:0.664:0.990:0.991:0.574:0.983:0.996:0.990:0.987	NULL	HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	(deletion:cds_exon[7055789,7056781])	no_errors	
TMEM30B	161291	genome.wustl.edu	37	14	61746982	61746988	+	Frame_Shift_Del	DEL	GCGCGCA	GCGCGCA	-	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	GCGCGCA	GCGCGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	61746982	61746988	GCGCGCA	-	DEL	TMEM30B	NM_001017970	human	genbank	57_37b	-1	validated	frame_shift_del	c.884_878	p.V293fs	0.993:0.880:0.811:0.798:0.996:1.000:1.000	HMMPfam_CDC50	HMMPfam_CDC50	(deletion:cds_exon[61746810,61747865])	no_errors	
TMEM30B	161291	genome.wustl.edu	37	14	61746991	61747001	+	Frame_Shift_Del	DEL	GGGTAGTTGTA	GGGTAGTTGTA	-	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	GGGTAGTTGTA	GGGTAGTTGTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	61746991	61747001	GGGTAGTTGTA	-	DEL	TMEM30B	NM_001017970	human	genbank	57_37b	-1	validated	frame_shift_del	c.875_865	p.Y289fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_CDC50	HMMPfam_CDC50	(deletion:cds_exon[61746810,61747865])	no_errors	
TRBV5-6	0	genome.wustl.edu	37	7	142131461	142131461	+	Silent	SNP	G	G	A	rs13438332	byCluster;byFrequency	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	142131461	142131461	G	A	SNP	TRBV5-6	ENST00000390375	human	ensembl	57_37b	-1	known	silent	c.294	p.N98	0.000	HMMPfam_V-set,superfamily_SSF48726	HMMPfam_V-set,superfamily_SSF48726	-		
TSTA3	7264	genome.wustl.edu	37	8	144696871	144696871	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144696871	144696871	C	T	SNP	TSTA3	ENST00000433984	human	ensembl	57_37b	-1	known	missense	c.476	p.R159H	0.001	NULL	superfamily_NAD(P)-bd,HMMPfam_Epimerase	-	no_errors	
ZNF324	25799	genome.wustl.edu	37	19	58983206	58983206	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58983206	58983206	C	T	SNP	ZNF324	NM_014347	human	genbank	57_37b	+1	provisional	silent	c.1347	p.G449	0.023	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF420	147923	genome.wustl.edu	37	19	37619086	37619086	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	37619086	37619086	A	G	SNP	ZNF420	NM_144689	human	genbank	57_37b	+1	provisional	missense	c.1193	p.K398R	0.995	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF443	10224	genome.wustl.edu	37	19	12541421	12541421	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12541421	12541421	T	C	SNP	ZNF443	NM_005815	human	genbank	57_37b	-1	validated	missense	c.1565	p.H522R	0.452	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF606	80095	genome.wustl.edu	37	19	58489891	58489891	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58489891	58489891	C	G	SNP	ZNF606	NM_025027	human	genbank	57_37b	-1	validated	missense	c.2157	p.E719D	0.999	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF608	57507	genome.wustl.edu	37	5	123982737	123982737	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HU-01	TCGA-BH-A0HU-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	123982737	123982737	G	A	SNP	ZNF608	NM_020747	human	genbank	57_37b	-1	validated	silent	c.3340	p.L1114	1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
