Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCB5	340273	genome.wustl.edu	37	7	20691242	20691242	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	20691242	20691242	C	G	SNP	ABCB5	NM_178559	human	genbank	57_37b	+1	validated	missense	c.197	p.P66R	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ABC_tran,HMMSmart_SM00382	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	-	no_errors	
ADAM11	4185	genome.wustl.edu	37	17	42856604	42856604	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42856604	42856604	G	A	SNP	ADAM11	NM_002390	human	genbank	57_37b	+1	reviewed	missense	c.2291	p.G764E	1.000	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,superfamily_EGF/Laminin,PatternScan_EGF_1"	-	no_errors	
ALDH1L1	10840	genome.wustl.edu	37	3	125828902	125828902	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	125828902	125828902	G	A	SNP	ALDH1L1	NM_012190	human	genbank	57_37b	-1	reviewed	silent	c.2232	p.T744	1.000	superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh	PatternScan_PHOSPHOPANTETHEINE,HMMPfam_Formyl_trans_N,superfamily_formyl_transf,PatternScan_GART,superfamily_FMT_C_like,HMMPfam_Formyl_trans_C,superfamily_ACP_like,superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors	
ALPP	250	genome.wustl.edu	37	2	233244985	233244985	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	233244985	233244985	G	C	SNP	ALPP	NM_001632	human	genbank	57_37b	+1	reviewed	missense	c.747	p.R249S	0.005	superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc	superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,PatternScan_ALKALINE_PHOSPHATASE	-	no_errors	
ALPPL2	251	genome.wustl.edu	37	2	233273066	233273066	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	233273066	233273066	G	C	SNP	ALPPL2	NM_031313	human	genbank	57_37b	+1	reviewed	missense	c.738	p.R246S	0.019	superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc	superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,PatternScan_ALKALINE_PHOSPHATASE	-	no_errors	
AMBRA1	55626	genome.wustl.edu	37	11	46563919	46563919	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	46563919	46563919	T	G	SNP	AMBRA1	NM_017749	human	genbank	57_37b	-1	validated	missense	c.1378	p.T460P	1.000	NULL	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
ARHGEF1	9138	genome.wustl.edu	37	19	42396123	42396123	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42396123	42396123	G	T	SNP	ARHGEF1	NM_199002	human	genbank	57_37b	+1	reviewed	missense	c.298	p.G100C	0.011	HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam	HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMSmart_PH	-	no_errors	
ARMCX5	64860	genome.wustl.edu	37	X	101857506	101857506	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	101857506	101857506	C	G	SNP	ARMCX5	NM_022838	human	genbank	57_37b	+1	validated	missense	c.437	p.T146S	0.000	NULL	PatternScan_CPSASE_2,HMMPfam_DUF634,superfamily_ARM repeat	-	no_errors	
ASXL3	80816	genome.wustl.edu	37	18	31319718	31319718	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	31319718	31319718	G	T	SNP	ASXL3	NM_030632	human	genbank	57_37b	+1	provisional	missense	c.2350	p.D784Y	1.000	NULL	NULL	-	no_errors	
AXIN1	8312	genome.wustl.edu	37	16	396580	396580	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	396580	396580	A	G	SNP	AXIN1	NM_003502	human	genbank	57_37b	-1	reviewed	missense	c.446	p.I149T	1.000	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,HMMPfam_Axin_b-cat_bind,HMMPfam_DIX,HMMSmart_SM00021	-	no_errors	
BRCA1	672	genome.wustl.edu	37	17	41223256	41223256	+	Splice_Site	SNP	C	C	T	rs80358008	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	41223256	41223256	C	T	SNP	BRCA1	NM_007294	human	genbank	57_37b	-1	reviewed	splice_site	c.4676-1	e14-1	1.000	-	-	-		
C15orf55	256646	genome.wustl.edu	37	15	34647278	34647278	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	34647278	34647278	G	A	SNP	C15orf55	NM_175741	human	genbank	57_37b	+1	validated	silent	c.1335	p.Q445	0.330	NULL	NULL	-	no_errors	
C3orf77	375337	genome.wustl.edu	37	3	44285812	44285812	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	44285812	44285812	G	A	SNP	C3orf77	NM_001145030	human	genbank	57_37b	+1	validated	missense	c.1814	p.G605E	0.477	NULL	HMMPfam_PAZ	-	no_errors	
CCDC150	284992	genome.wustl.edu	37	2	197565833	197565833	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	197565833	197565833	C	G	SNP	CCDC150	NM_001080539	human	genbank	57_37b	+1	provisional	missense	c.1624	p.L542V	0.708	NULL	NULL	-	no_errors	
CD163	9332	genome.wustl.edu	37	12	7640336	7640336	+	Missense_Mutation	SNP	G	G	A	rs62622400	byCluster;byFrequency;by1000genomes	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7640336	7640336	G	A	SNP	CD163	ENST00000396620	human	ensembl	57_37b	-1	known	missense	c.1768	p.H590Y	0.000	NULL	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	-		
CHD7	55636	genome.wustl.edu	37	8	61765545	61765545	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	61765545	61765545	G	C	SNP	CHD7	NM_017780	human	genbank	57_37b	+1	reviewed	silent	c.6261	p.L2087	1.000	NULL	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	-	no_errors	
CRELD1	78987	genome.wustl.edu	37	3	9976594	9976594	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	9976594	9976594	A	C	SNP	CRELD1	NM_001031717	human	genbank	57_37b	+1	validated	missense	c.250	p.K84Q	1.000	NULL	superfamily_Grow_fac_recept,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_LAM_1,HMMSmart_FU,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors	
CXorf59	286464	genome.wustl.edu	37	X	36117974	36117974	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	36117974	36117974	A	G	SNP	CXorf59	NM_173695	human	genbank	57_37b	+1	validated	missense	c.830	p.D277G	1.000	NULL	superfamily_Calponin-homology	-	no_errors	
CYP2W1	54905	genome.wustl.edu	37	7	1024915	1024915	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	1024915	1024915	C	G	SNP	CYP2W1	NM_017781	human	genbank	57_37b	+1	reviewed	missense	c.601	p.L201V	0.515	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors	
DDX50	79009	genome.wustl.edu	37	10	70706250	70706250	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	70706250	70706250	C	T	SNP	DDX50	NM_024045	human	genbank	57_37b	+1	reviewed	missense	c.2078	p.S693L	0.991	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_GUCT	-	no_errors	
DIDO1	11083	genome.wustl.edu	37	20	61512736	61512736	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61512736	61512736	T	G	SNP	DIDO1	NM_033081	human	genbank	57_37b	-1	reviewed	silent	c.4572	p.P1524	0.995	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Elongation factor TFIIS domain 2,HMMPfam_TFIIS_M,HMMSmart_SM00510,HMMPfam_SPOC	-	no_errors	
EDC3	80153	genome.wustl.edu	37	15	74948230	74948230	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	74948230	74948230	T	C	SNP	EDC3	NM_001142443	human	genbank	57_37b	-1	validated	missense	c.664	p.I222V	1.000	HMMPfam_DFDF	HMMPfam_DFDF,superfamily_YjeF N-terminal domain-like,HMMPfam_YjeF_N	-	no_errors	
ELOVL3	83401	genome.wustl.edu	37	10	103988761	103988761	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	103988761	103988761	G	C	SNP	ELOVL3	NM_152310	human	genbank	57_37b	+1	provisional	missense	c.565	p.A189P	1.000	HMMPfam_ELO	HMMPfam_ELO,PatternScan_ELO	-	no_errors	
ENSG00000202240	0	genome.wustl.edu	37	18	54951861	54951861	+	RNA	SNP	G	G	A	rs9955269	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	54951861	54951861	G	A	SNP	ENSG00000202240	ENST00000365370	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.316	-	-	-		
ESCO1	114799	genome.wustl.edu	37	18	19153877	19153877	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	19153877	19153877	T	C	SNP	ESCO1	NM_052911	human	genbank	57_37b	-1	validated	missense	c.928	p.I310V	1.000	NULL	NULL	-	no_errors	
ETNK1	55500	genome.wustl.edu	37	12	22797179	22797179	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	22797179	22797179	A	G	SNP	ETNK1	NM_001039481	human	genbank	57_37b	+1	reviewed	missense	c.718	p.T240A	0.000	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Choline_kinase	-	no_errors	
FAM122B	159090	genome.wustl.edu	37	X	133906273	133906273	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	133906273	133906273	A	T	SNP	FAM122B	NM_145284	human	genbank	57_37b	-1	validated	missense	c.643	p.S215T	1.000	NULL	NULL	-	no_errors	
FAM71B	153745	genome.wustl.edu	37	5	156590215	156590215	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	156590215	156590215	T	C	SNP	FAM71B	NM_130899	human	genbank	57_37b	-1	validated	missense	c.1061	p.E354G	0.000	NULL	NULL	-	no_errors	
FAT3	120114	genome.wustl.edu	37	11	92532859	92532859	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	92532859	92532859	C	G	SNP	FAT3	NM_001008781	human	genbank	57_37b	+1	validated	missense	c.6680	p.P2227R	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors	
FBXW4	6468	genome.wustl.edu	37	10	103432723	103432724	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	103432723	103432724	CA	-	DEL	FBXW4	NM_022039	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.624_623	p.V208fs	1.000:1.000	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	PatternScan_WD_REPEATS_1,superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	(deletion:cds_exon[103432672,103432804])	no_errors	
FHL1	2273	genome.wustl.edu	37	X	135288565	135288565	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135288565	135288565	G	A	SNP	FHL1	NM_001449	human	genbank	57_37b	+1	reviewed	splice_site	c.1-1	e1-1	1.000	-	-	-	no_errors	
FMR1NB	158521	genome.wustl.edu	37	X	147088318	147088318	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	147088318	147088318	C	T	SNP	FMR1NB	NM_152578	human	genbank	57_37b	+1	validated	missense	c.494	p.S165L	0.000	NULL	NULL	-	no_errors	
GCC2	9648	genome.wustl.edu	37	2	109098250	109098253	+	Frame_Shift_Del	DEL	AATT	AATT	-	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	AATT	AATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	109098250	109098253	AATT	-	DEL	GCC2	NM_181453	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.3158_3161	p.L1054fs	0.998:0.956:0.954:0.990	NULL	HMMPfam_GRIP,HMMSmart_Grip	(deletion:cds_exon[109098153,109098272])	no_errors	
GCM2	9247	genome.wustl.edu	37	6	10874470	10874470	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	10874470	10874470	G	C	SNP	GCM2	NM_004752	human	genbank	57_37b	-1	reviewed	missense	c.1279	p.P427A	0.398	NULL	superfamily_GCM_motif,HMMPfam_GCM	-	no_errors	
GPR156	165829	genome.wustl.edu	37	3	119886036	119886036	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	119886036	119886036	C	G	SNP	GPR156	NM_153002	human	genbank	57_37b	-1	validated	missense	c.2288	p.C763S	1.000	NULL	HMMPfam_7tm_3,PatternScan_PEROXIDASE_1	-	no_errors	
GPRASP1	9737	genome.wustl.edu	37	X	101912281	101912281	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	101912281	101912281	G	A	SNP	GPRASP1	NM_001099410	human	genbank	57_37b	+1	validated	missense	c.3440	p.C1147Y	0.997	HMMPfam_DUF634	HMMPfam_DUF634,superfamily_ARM-type_fold	-	no_errors	
GSPT1	2935	genome.wustl.edu	37	16	12009404	12009404	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	12009404	12009404	C	T	SNP	GSPT1	NM_002094	human	genbank	57_37b	-1	validated	silent	c.174	p.R58	0.807	NULL	HMMPfam_PAM2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	-	no_errors	
GSTZ1	2954	genome.wustl.edu	37	14	77793827	77793827	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	77793827	77793827	T	A	SNP	GSTZ1	NM_145870	human	genbank	57_37b	+1	reviewed	missense	c.148	p.F50I	1.000	HMMPfam_GST_N,superfamily_Thioredoxin-like	HMMPfam_GST_N,superfamily_Thioredoxin-like,superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C	-	no_errors	
HSPA12A	259217	genome.wustl.edu	37	10	118439170	118439170	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	118439170	118439170	G	A	SNP	HSPA12A	NM_025015	human	genbank	57_37b	-1	validated	missense	c.1130	p.A377V	1.000	superfamily_SSF53067	PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF53067	-	no_errors	
HSPC159	29094	genome.wustl.edu	37	2	64683524	64683524	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	64683524	64683524	T	A	SNP	HSPC159	NM_014181	human	genbank	57_37b	+1	validated	silent	c.300	p.S100	0.992	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin	-	no_errors	
IL6ST	3572	genome.wustl.edu	37	5	55256367	55256367	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	55256367	55256367	G	C	SNP	IL6ST	NM_002184	human	genbank	57_37b	-1	reviewed	missense	c.836	p.S279C	0.763	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_Lep_receptor_Ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_HEMATOPO_REC_L_F2	-	no_errors	
KIAA0467	23334	genome.wustl.edu	37	1	43902942	43902946	+	Frame_Shift_Del	DEL	GATCC	GATCC	-	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	GATCC	GATCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	43902942	43902946	GATCC	-	DEL	KIAA0467	NM_015284	human	genbank	57_37b	+1	predicted	frame_shift_del	c.3438_3442	p.I1147fs	1.000:1.000:1.000:1.000:1.000	NULL	NULL	(deletion:cds_exon[43902842,43902994])	no_errors	
KIAA1632	57724	genome.wustl.edu	37	18	43534805	43534805	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	43534805	43534805	G	A	SNP	KIAA1632	NM_020964	human	genbank	57_37b	-1	validated	missense	c.563	p.S188F	0.703	NULL	NULL	-	no_errors	
KIAA2026	158358	genome.wustl.edu	37	9	5920327	5920327	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	5920327	5920327	A	T	SNP	KIAA2026	NM_001017969	human	genbank	57_37b	-1	validated	missense	c.5669	p.I1890N	1.000	NULL	superfamily_Bromodomain	-	no_errors	
KISS1	3814	genome.wustl.edu	37	1	204159612	204159612	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	204159612	204159612	T	-	DEL	KISS1	NM_002256	human	genbank	57_37b	-1	validated	frame_shift_del	c.417	p.*139fs	0.001	NULL	NULL	(deletion:cds_exon[204159612,204159925])	no_errors	
LAMA1	284217	genome.wustl.edu	37	18	6959402	6959402	+	Silent	SNP	G	G	A	rs73390532	byCluster;by1000genomes	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	6959402	6959402	G	A	SNP	LAMA1	NM_005559	human	genbank	57_37b	-1	validated	silent	c.7716	p.H2572	0.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_1	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMSmart_SM00282,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2	-		
LCT	3938	genome.wustl.edu	37	2	136558268	136558268	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	136558268	136558268	C	A	SNP	LCT	NM_002299	human	genbank	57_37b	-1	reviewed	missense	c.4775	p.G1592V	1.000	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat	superfamily_Glyco_hydro_cat,HMMPfam_Glyco_hydro_1,PatternScan_GLYCOSYL_HYDROL_F1_2,PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors	
LIMK1	3984	genome.wustl.edu	37	7	73530288	73530288	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	73530288	73530288	G	A	SNP	LIMK1	NM_002314	human	genbank	57_37b	+1	reviewed	missense	c.1567	p.G523S	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP	-	no_errors	
LMOD3	56203	genome.wustl.edu	37	3	69167916	69167916	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	69167916	69167916	C	G	SNP	LMOD3	NM_198271	human	genbank	57_37b	-1	validated	silent	c.1590	p.V530	1.000	NULL	HMMPfam_Tropomodulin,superfamily_RNI-like,HMMPfam_WH2	-	no_errors	
LPHN3	23284	genome.wustl.edu	37	4	62778445	62778445	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	62778445	62778445	A	T	SNP	LPHN3	NM_015236	human	genbank	57_37b	+1	reviewed	missense	c.1878	p.K626N	1.000	superfamily_Family A G protein-coupled receptor-like	HMMPfam_Gal_Lectin,HMMPfam_OLF,HMMSmart_SM00284,HMMSmart_SM00008,HMMPfam_HRM,superfamily_Family A G protein-coupled receptor-like,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_Latrophilin	-	no_errors	
LXN	56925	genome.wustl.edu	37	3	158387342	158387342	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	158387342	158387342	C	T	SNP	LXN	NM_020169	human	genbank	57_37b	-1	reviewed	missense	c.250	p.A84T	1.000	HMMPfam_Latexin	HMMPfam_Latexin	-	no_errors	
LYNX1	66004	genome.wustl.edu	37	8	143856611	143856611	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	143856611	143856611	G	A	SNP	LYNX1	NM_177457	human	genbank	57_37b	-1	reviewed	silent	c.325	p.L109	0.349	NULL	superfamily_SSF57302,HMMSmart_LU,HMMPfam_UPAR_LY6	-	no_errors	
LYPD5	284348	genome.wustl.edu	37	19	44303921	44303921	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	44303921	44303921	T	G	SNP	LYPD5	NM_001031749	human	genbank	57_37b	-1	validated	missense	c.130	p.M44L	0.000	superfamily_Snake toxin-like	superfamily_Snake toxin-like,PatternScan_LY6_UPAR,HMMPfam_UPAR_LY6	-	no_errors	
MAGEA12	4111	genome.wustl.edu	37	X	151900151	151900151	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	151900151	151900151	G	T	SNP	MAGEA12	NM_005367	human	genbank	57_37b	-1	reviewed	missense	c.650	p.P217H	0.022	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors	
MMRN2	79812	genome.wustl.edu	37	10	88702441	88702458	+	In_Frame_Del	DEL	CTCCCGCGCCAGCCCGGC	CTCCCGCGCCAGCCCGGC	-	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	CTCCCGCGCCAGCCCGGC	CTCCCGCGCCAGCCCGGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	88702441	88702458	CTCCCGCGCCAGCCCGGC	-	DEL	MMRN2	NM_024756	human	genbank	57_37b	-1	validated	in_frame_del	c.2100_2083	p.AGLARE695in_frame_del	0.034:0.054:0.049:0.002:0.000:0.000:0.000:0.000:0.006:0.973:0.980:0.979:0.015:0.001:0.000:0.000:0.000:0.040	NULL	HMMPfam_EMI,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q	(deletion:cds_exon[88702074,88703885])	no_errors	
MSI1	4440	genome.wustl.edu	37	12	120791150	120791150	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120791150	120791150	T	G	SNP	MSI1	NM_002442	human	genbank	57_37b	-1	reviewed	missense	c.685	p.S229R	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
MX2	4600	genome.wustl.edu	37	21	42749839	42749839	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	42749839	42749839	G	A	SNP	MX2	NM_002463	human	genbank	57_37b	+1	reviewed	missense	c.373	p.G125R	1.000	HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N	HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,HMMPfam_GED,HMMSmart_GED	-	no_errors	
NAV3	89795	genome.wustl.edu	37	12	78513062	78513062	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	78513062	78513062	T	A	SNP	NAV3	NM_014903	human	genbank	57_37b	+1	validated	missense	c.3086	p.L1029Q	0.880	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	-	no_errors	
NCOA3	8202	genome.wustl.edu	37	20	46264187	46264187	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	46264187	46264187	C	G	SNP	NCOA3	NM_181659	human	genbank	57_37b	+1	reviewed	missense	c.1234	p.P412A	1.000	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_SRC-1,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_Nuc_rec_co-act,HMMPfam_DUF1518	-	no_errors	
NDUFV1	4723	genome.wustl.edu	37	11	67377047	67377047	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67377047	67377047	G	A	SNP	NDUFV1	NM_007103	human	genbank	57_37b	+1	reviewed	missense	c.451	p.A151T	0.999	HMMPfam_Complex1_51K	HMMPfam_Complex1_51K,PatternScan_COMPLEX1_51K_1,HMMPfam_SLBB,HMMPfam_NADH_4Fe-4S,PatternScan_COMPLEX1_51K_2	-	no_errors	
NET1	10276	genome.wustl.edu	37	10	5493833	5493833	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	5493833	5493833	C	T	SNP	NET1	NM_001047160	human	genbank	57_37b	+1	validated	missense	c.296	p.T99M	1.000	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
NXPH1	30010	genome.wustl.edu	37	7	8791150	8791150	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	8791150	8791150	C	T	SNP	NXPH1	NM_152745	human	genbank	57_37b	+1	reviewed	silent	c.567	p.S189	1.000	HMMPfam_Neurexophilin	HMMPfam_Neurexophilin	-	no_errors	
OR5M5P	0	genome.wustl.edu	37	11	56294431	56294431	+	Missense_Mutation	SNP	G	G	T	rs1945196	byCluster;byFrequency;by1000genomes	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	56294431	56294431	G	T	SNP	OR5M5P	ENST00000341231	human	ensembl	57_37b	-1	known	missense	c.308	p.P103H	0.359	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like,PatternScan_G_PROTEIN_RECEP_F1_1	-		
PCDP1	200373	genome.wustl.edu	37	2	120362809	120362809	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	120362809	120362809	C	G	SNP	PCDP1	NM_001029996	human	genbank	57_37b	+1	validated	silent	c.219	p.L73	0.879	NULL	NULL	-	no_errors	
PKHD1	5314	genome.wustl.edu	37	6	51483961	51483961	+	Missense_Mutation	SNP	T	T	G	rs9381994	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	51483961	51483961	T	G	SNP	PKHD1	NM_138694	human	genbank	57_37b	-1	reviewed	missense	c.12143	p.Q4048P	0.998	NULL	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00710,HMMPfam_G8,superfamily_Pectin lyase-like	-		
PRUNE	58497	genome.wustl.edu	37	1	151006280	151006280	+	Splice_Site	DEL	A	A	-	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151006280	151006280	A	-	DEL	PRUNE	NM_021222	human	genbank	57_37b	+1	provisional	splice_site_del	c.934-2	e8-2	0.989	-	-	(deletion:intron[151001421,151006281])	no_errors	
PWP1	11137	genome.wustl.edu	37	12	108086667	108086667	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	108086667	108086667	G	A	SNP	PWP1	NM_007062	human	genbank	57_37b	+1	provisional	silent	c.396	p.L132	0.984	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
PXDNL	137902	genome.wustl.edu	37	8	52339306	52339306	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	52339306	52339306	A	T	SNP	PXDNL	NM_144651	human	genbank	57_37b	-1	validated	missense	c.1538	p.F513Y	0.554	HMMPfam_I-set,superfamily_Immunoglobulin	superfamily_L domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	-	no_errors	
RAD23B	5887	genome.wustl.edu	37	9	110086219	110086219	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	110086219	110086219	G	A	SNP	RAD23B	NM_002874	human	genbank	57_37b	+1	reviewed	missense	c.866	p.R289K	1.000	superfamily_XPC-binding domain,HMMSmart_SM00727,HMMPfam_XPC-binding	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,superfamily_XPC-binding domain,HMMSmart_SM00727,HMMPfam_XPC-binding	-	no_errors	
RCOR3	55758	genome.wustl.edu	37	1	211486914	211486914	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	211486914	211486914	A	T	SNP	RCOR3	NM_001136223	human	genbank	57_37b	+1	validated	missense	c.1466	p.Q489L	1.000	NULL	HMMPfam_ELM2,superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	-	no_errors	
SAAL1	113174	genome.wustl.edu	37	11	18124894	18124894	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	18124894	18124894	C	T	SNP	SAAL1	NM_138421	human	genbank	57_37b	-1	validated	splice_site	c.136-1	e2-1	0.997	-	-	-	no_errors	
SLC6A8	6535	genome.wustl.edu	37	X	152959549	152959549	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	152959549	152959549	C	T	SNP	SLC6A8	ENST00000328897	human	ensembl	57_37b	+1	known	splice_site	c.1344+2	e5+2	0.000	-	-	-	no_errors	
SLC9A7	84679	genome.wustl.edu	37	X	46539151	46539151	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	46539151	46539151	G	A	SNP	SLC9A7	NM_032591	human	genbank	57_37b	-1	reviewed	missense	c.565	p.P189S	1.000	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	no_errors	
SPG11	80208	genome.wustl.edu	37	15	44944117	44944117	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	44944117	44944117	G	A	SNP	SPG11	NM_025137	human	genbank	57_37b	-1	reviewed	missense	c.1028	p.S343L	0.004	NULL	PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors	
STAG1	10274	genome.wustl.edu	37	3	136096565	136096565	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	136096565	136096565	C	T	SNP	STAG1	NM_005862	human	genbank	57_37b	-1	reviewed	silent	c.2307	p.V769	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_STAG	-	no_errors	
SYT11	23208	genome.wustl.edu	37	1	155850298	155850298	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155850298	155850298	T	A	SNP	SYT11	NM_152280	human	genbank	57_37b	+1	validated	missense	c.869	p.I290N	1.000	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
TADA2B	93624	genome.wustl.edu	37	4	7055893	7055893	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	7055893	7055893	C	T	SNP	TADA2B	NM_152293	human	genbank	57_37b	+1	validated	silent	c.375	p.P125	0.115	NULL	HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors	
TAS2R1	50834	genome.wustl.edu	37	5	9629727	9629727	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	9629727	9629727	T	G	SNP	TAS2R1	NM_019599	human	genbank	57_37b	-1	reviewed	missense	c.418	p.I140L	0.000	HMMPfam_TAS2R,superfamily_SSF81321	HMMPfam_TAS2R,superfamily_SSF81321	-	no_errors	
TCF20	6942	genome.wustl.edu	37	22	42609210	42609210	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	42609210	42609210	G	A	SNP	TCF20	NM_005650	human	genbank	57_37b	-1	reviewed	missense	c.2102	p.S701F	1.000	NULL	HMMSmart_SM00249	-	no_errors	
TNNT3	7140	genome.wustl.edu	37	11	1950349	1950349	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1950349	1950349	G	A	SNP	TNNT3	NM_006757	human	genbank	57_37b	+1	reviewed	splice_site	c.83-1	e6-1	0.002	-	-	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7577559	7577559	+	Missense_Mutation	SNP	G	G	C	rs28934573	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577559	7577559	G	C	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.722	p.S241C	1.000	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-		
TRPM2	7226	genome.wustl.edu	37	21	45795833	45795833	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45795833	45795833	G	A	SNP	TRPM2	NM_003307	human	genbank	57_37b	+1	reviewed	missense	c.889	p.V297M	0.996	NULL	HMMPfam_Ion_trans,PatternScan_CHITINASE_18,superfamily_Nudix	-	no_errors	
TRPM4	54795	genome.wustl.edu	37	19	49692303	49692303	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49692303	49692303	C	A	SNP	TRPM4	NM_017636	human	genbank	57_37b	+1	provisional	silent	c.1974	p.A658	0.751	NULL	HMMPfam_Ion_trans	-	no_errors	
UBR7	55148	genome.wustl.edu	37	14	93686633	93686633	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	93686633	93686633	T	C	SNP	UBR7	NM_175748	human	genbank	57_37b	+1	validated	silent	c.999	p.D333	0.999	NULL	PatternScan_ZF_PHD_1,HMMPfam_zf-UBR,HMMPfam_PHD,HMMSmart_PHD	-	no_errors	
USH2A	7399	genome.wustl.edu	37	1	215847863	215847863	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	215847863	215847863	A	T	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	missense	c.13390	p.W4464R	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors	
WDHD1	11169	genome.wustl.edu	37	14	55408276	55408276	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	55408276	55408276	T	G	SNP	WDHD1	NM_007086	human	genbank	57_37b	-1	reviewed	missense	c.3322	p.K1108Q	0.987	NULL	superfamily_WD40_like,HMMPfam_WD40,HMMSmart_WD40,PatternScan_WD_REPEATS_1,superfamily_HMG-box,HMMSmart_HMG	-	no_errors	
WDR37	22884	genome.wustl.edu	37	10	1123883	1123883	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	1123883	1123883	C	T	SNP	WDR37	NM_014023	human	genbank	57_37b	+1	reviewed	silent	c.175	p.L59	0.998	NULL	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
WISP2	8839	genome.wustl.edu	37	20	43348649	43348649	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	43348649	43348649	C	T	SNP	WISP2	NM_003881	human	genbank	57_37b	+1	reviewed	missense	c.172	p.R58W	0.987	HMMSmart_SM00121,HMMPfam_IGFBP,PatternScan_IGFBP_N_1	HMMSmart_SM00121,HMMPfam_IGFBP,PatternScan_IGFBP_N_1,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,PatternScan_C5_MTASE_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors	
ZNF318	24149	genome.wustl.edu	37	6	43316157	43316157	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43316157	43316157	T	A	SNP	ZNF318	NM_014345	human	genbank	57_37b	-1	validated	missense	c.2977	p.S993C	0.963	NULL	HMMSmart_SM00451,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF619	285267	genome.wustl.edu	37	3	40528623	40528623	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	40528623	40528623	G	T	SNP	ZNF619	NM_001145082	human	genbank	57_37b	+1	validated	nonsense	c.742	p.E248*	0.079	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF804A	91752	genome.wustl.edu	37	2	185803357	185803357	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0WA-01	TCGA-BH-A0WA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	185803357	185803357	C	T	SNP	ZNF804A	NM_194250	human	genbank	57_37b	+1	provisional	silent	c.3234	p.S1078	0.809	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
