Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ASCC2	84164	genome.wustl.edu	37	22	30197090	30197090	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	30197090	30197090	T	C	SNP	ASCC2	NM_032204	human	genbank	57_37b	-1	provisional	silent	c.1578	p.K526	0.991	NULL	HMMPfam_CUE,HMMSmart_SM00546	-	no_errors	
ATG2B	55102	genome.wustl.edu	37	14	96809459	96809459	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	96809459	96809459	T	G	SNP	ATG2B	NM_018036	human	genbank	57_37b	-1	validated	silent	c.741	p.P247	0.997	NULL	HMMPfam_ATG_C	-	no_errors	
ATRX	546	genome.wustl.edu	37	X	76938781	76938781	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	76938781	76938781	G	A	SNP	ATRX	NM_000489	human	genbank	57_37b	-1	reviewed	missense	c.1967	p.S656F	0.998	NULL	superfamily_FYVE/PHD zinc finger,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
BNC2	54796	genome.wustl.edu	37	9	16436220	16436220	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	16436220	16436220	C	T	SNP	BNC2	NM_017637	human	genbank	57_37b	-1	validated	missense	c.1972	p.D658N	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
C2orf71	388939	genome.wustl.edu	37	2	29296696	29296696	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	29296696	29296696	T	C	SNP	C2orf71	NM_001029883	human	genbank	57_37b	-1	predicted	silent	c.432	p.K144	0.000	NULL	NULL	-	no_errors	
C3	718	genome.wustl.edu	37	19	6718310	6718310	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6718310	6718310	G	A	SNP	C3	NM_000064	human	genbank	57_37b	-1	reviewed	silent	c.381	p.S127	0.604	HMMPfam_A2M_N	HMMPfam_A2M_N,HMMPfam_A2M_N_2,superfamily_Anaphylotoxins (complement system),HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep,superfamily_TIMP-like,HMMSmart_SM00643,HMMPfam_NTR	-	no_errors	
CAND1	55832	genome.wustl.edu	37	12	67686481	67686481	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	67686481	67686481	G	A	SNP	CAND1	NM_018448	human	genbank	57_37b	+1	validated	missense	c.292	p.D98N	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_TIP120	-	no_errors	
CBWD1	55871	genome.wustl.edu	37	9	156515	156515	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	156515	156515	C	G	SNP	CBWD1	NM_018491	human	genbank	57_37b	-1	validated	missense	c.541	p.E181Q	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_cobW	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_cobW,HMMPfam_CobW_C,superfamily_Hypothetical protein YjiA C-terminal domain	-	no_errors	
CCDC111	201973	genome.wustl.edu	37	4	185606574	185606574	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	185606574	185606574	G	C	SNP	CCDC111	NM_152683	human	genbank	57_37b	+1	validated	missense	c.1108	p.E370Q	0.992	NULL	HMMPfam_DNA_primase_S,HMMPfam_Herpes_UL52	-	no_errors	
CEP78	84131	genome.wustl.edu	37	9	80880403	80880403	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	80880403	80880403	G	A	SNP	CEP78	NM_001098802	human	genbank	57_37b	+1	validated	missense	c.1744	p.E582K	1.000	NULL	superfamily_SSF52047	-	no_errors	
CERK	64781	genome.wustl.edu	37	22	47095261	47095263	+	In_Frame_Del	DEL	TGA	TGA	-	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	TGA	TGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	47095261	47095263	TGA	-	DEL	CERK	NM_022766	human	genbank	57_37b	-1	validated	in_frame_del	c.892_890	p.I297in_frame_del	0.999:0.998:1.000	NULL	HMMSmart_PH,HMMPfam_DAGK_cat,HMMSmart_DAGKc	(deletion:cds_exon[47095210,47095362])	no_errors	
CES7	221223	genome.wustl.edu	37	16	55907861	55907861	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	55907861	55907861	C	T	SNP	CES7	NM_001143685	human	genbank	57_37b	-1	validated	silent	c.162	p.V54	0.757	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1	-	no_errors	
CFTR	1080	genome.wustl.edu	37	7	117306992	117306992	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	117306992	117306992	G	T	SNP	CFTR	NM_000492	human	genbank	57_37b	+1	reviewed	missense	c.4273	p.D1425Y	0.998	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
CLCN5	1184	genome.wustl.edu	37	X	49853534	49853534	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49853534	49853534	C	G	SNP	CLCN5	NM_001127898	human	genbank	57_37b	+1	reviewed	silent	c.1737	p.A579	0.999	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMSmart_SM00116,HMMPfam_CBS	-	no_errors	
CTNNA1	1495	genome.wustl.edu	37	5	138260325	138260325	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	138260325	138260325	C	T	SNP	CTNNA1	NM_001903	human	genbank	57_37b	+1	validated	missense	c.1673	p.S558L	1.000	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin,PatternScan_VINCULIN_1	-	no_errors	
CYP2S1	29785	genome.wustl.edu	37	19	41707218	41707218	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41707218	41707218	C	T	SNP	CYP2S1	NM_030622	human	genbank	57_37b	+1	reviewed	missense	c.917	p.T306M	0.738	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors	
CYP7B1	9420	genome.wustl.edu	37	8	65509394	65509394	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	65509394	65509394	A	-	DEL	CYP7B1	NM_004820	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1326	p.F442fs	1.000	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450	(deletion:cds_exon[65509199,65509486])	no_errors	
DAB2IP	153090	genome.wustl.edu	37	9	124528856	124528856	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	124528856	124528856	G	A	SNP	DAB2IP	NM_032552	human	genbank	57_37b	+1	validated	missense	c.1460	p.R487Q	1.000	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP	HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_PH,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1	-	no_errors	
DAPK1	1612	genome.wustl.edu	37	9	90322160	90322160	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	90322160	90322160	T	A	SNP	DAPK1	NM_004938	human	genbank	57_37b	+1	reviewed	missense	c.4174	p.L1392M	0.255	superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SSF52540,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors	
DNAH10	196385	genome.wustl.edu	37	12	124377793	124377793	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	124377793	124377793	G	A	SNP	DNAH10	NM_207437	human	genbank	57_37b	+1	validated	silent	c.8655	p.A2885	0.092	NULL	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors	
DNAJC5	80331	genome.wustl.edu	37	20	62560669	62560669	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62560669	62560669	C	T	SNP	DNAJC5	NM_025219	human	genbank	57_37b	+1	provisional	missense	c.112	p.L38F	1.000	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1	-	no_errors	
EIF4G1	1981	genome.wustl.edu	37	3	184035137	184035137	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	184035137	184035137	C	T	SNP	EIF4G1	NM_182917	human	genbank	57_37b	+1	reviewed	missense	c.176	p.P59L	0.998	NULL	superfamily_ARM repeat,HMMPfam_MIF4G,HMMSmart_SM00543,HMMPfam_MA3,HMMSmart_SM00544,HMMSmart_SM00515,HMMPfam_W2	-	no_errors	
EP300	2033	genome.wustl.edu	37	22	41489026	41489026	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	41489026	41489026	G	A	SNP	EP300	NM_001429	human	genbank	57_37b	+1	reviewed	silent	c.18	p.V6	1.000	NULL	superfamily_TAZ_finger,HMMPfam_zf-TAZ,HMMSmart_ZnF_TAZ,HMMPfam_KIX,superfamily_KIX,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1,HMMPfam_DUF902,HMMPfam_DUF906,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_Creb_binding,superfamily_Nuc_recept_coact	-	no_errors	
EPHB2	2048	genome.wustl.edu	37	1	23111019	23111019	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	23111019	23111019	C	T	SNP	EPHB2	NM_004442	human	genbank	57_37b	+1	reviewed	silent	c.261	p.H87	0.971	superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd	superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMSmart_SAM,superfamily_SAM_homology,HMMPfam_SAM_1	-	no_errors	
ERP29	10961	genome.wustl.edu	37	12	112457615	112457615	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	112457615	112457615	G	A	SNP	ERP29	NM_006817	human	genbank	57_37b	+1	reviewed	missense	c.200	p.G67D	1.000	HMMPfam_ERp29_N,superfamily_Thiordxn-like_fd	HMMPfam_ERp29_N,superfamily_Thiordxn-like_fd,superfamily_ERP29_C,HMMPfam_ERp29,PatternScan_ER_TARGET	-	no_errors	
FAM155A	728215	genome.wustl.edu	37	13	107822931	107822931	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	107822931	107822931	G	C	SNP	FAM155A	NM_001080396	human	genbank	57_37b	-1	validated	missense	c.1291	p.L431V	1.000	NULL	NULL	-	no_errors	
FAM192A	80011	genome.wustl.edu	37	16	57188374	57188374	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57188374	57188374	G	A	SNP	FAM192A	NM_024946	human	genbank	57_37b	-1	validated	missense	c.593	p.P198L	0.852	NULL	HMMPfam_Nefa_Nip30_N	-	no_errors	
FAM5B	57795	genome.wustl.edu	37	1	177199234	177199234	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	177199234	177199234	C	T	SNP	FAM5B	NM_021165	human	genbank	57_37b	+1	provisional	silent	c.222	p.F74	1.000	NULL	HMMSmart_SM00457	-	no_errors	
FAM98B	283742	genome.wustl.edu	37	15	38757568	38757568	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	38757568	38757568	C	T	SNP	FAM98B	NM_173611	human	genbank	57_37b	+1	validated	missense	c.316	p.R106C	0.958	HMMPfam_DUF2465	HMMPfam_DUF2465	-	no_errors	
FCGRT	2217	genome.wustl.edu	37	19	50017360	50017360	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50017360	50017360	C	T	SNP	FCGRT	NM_001136019	human	genbank	57_37b	+1	reviewed	silent	c.295	p.L99	0.002	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-	no_errors	
FLNA	2316	genome.wustl.edu	37	X	153580968	153580968	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153580968	153580968	G	A	SNP	FLNA	NM_001110556	human	genbank	57_37b	-1	reviewed	missense	c.6455	p.S2152L	0.997	superfamily_E set domains,HMMSmart_SM00557	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557	-	no_errors	
FOXO4	4303	genome.wustl.edu	37	X	70320750	70320750	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70320750	70320750	G	A	SNP	FOXO4	NM_005938	human	genbank	57_37b	+1	reviewed	missense	c.670	p.E224K	0.943	NULL	"HMMPfam_Fork_head,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00339,PatternScan_FORK_HEAD_2"	-	no_errors	
GAL	51083	genome.wustl.edu	37	11	68458384	68458384	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	68458384	68458384	G	A	SNP	GAL	NM_015973	human	genbank	57_37b	+1	validated	splice_site	c.302-1	e5-1	0.991	-	-	-	no_errors	
GJA10	81025	genome.wustl.edu	37	6	90604284	90604284	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90604284	90604284	C	T	SNP	GJA10	NM_032602	human	genbank	57_37b	+1	validated	nonsense	c.97	p.R33*	1.000	HMMPfam_Connexin	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2	-	no_errors	
GOLGA3	2802	genome.wustl.edu	37	12	133351861	133351861	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	133351861	133351861	C	A	SNP	GOLGA3	NM_005895	human	genbank	57_37b	-1	reviewed	nonsense	c.4009	p.E1337*	1.000	NULL	superfamily_Spectrin repeat,superfamily_Prefoldin	-	no_errors	
GPR143	4935	genome.wustl.edu	37	X	9714090	9714090	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	9714090	9714090	T	A	SNP	GPR143	NM_000273	human	genbank	57_37b	-1	reviewed	missense	c.712	p.T238S	0.002	HMMPfam_Ocular_alb	HMMPfam_Ocular_alb	-	no_errors	
GRIA4	2893	genome.wustl.edu	37	11	105481745	105481745	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	105481745	105481745	G	C	SNP	GRIA4	NM_000829	human	genbank	57_37b	+1	reviewed	missense	c.21	p.Q7H	1.000	NULL	superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors	
GTF2H2B	0	genome.wustl.edu	37	5	69718708	69718708	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	69718708	69718708	A	G	SNP	GTF2H2B	NM_001098729	human	genbank	57_37b	+1	provisional	silent	c.267	p.E89	1.000	HMMPfam_Ssl1,superfamily_vWA-like,HMMSmart_SM00327	HMMPfam_Ssl1,superfamily_vWA-like,HMMSmart_SM00327,superfamily_Cysteine-rich domain,HMMPfam_C1_4,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
IRAK2	3656	genome.wustl.edu	37	3	10251290	10251290	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10251290	10251290	G	A	SNP	IRAK2	NM_001570	human	genbank	57_37b	+1	reviewed	missense	c.442	p.A148T	0.000	NULL	PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_ATP,superfamily_DEATH_like,HMMPfam_Death,superfamily_Kinase_like,HMMPfam_Pkinase	-	no_errors	
KBTBD10	10324	genome.wustl.edu	37	2	170366479	170366479	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170366479	170366479	C	G	SNP	KBTBD10	NM_006063	human	genbank	57_37b	+1	validated	missense	c.191	p.S64C	1.000	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,PatternScan_MGMT,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors	
KCNH7	90134	genome.wustl.edu	37	2	163291915	163291915	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	163291915	163291915	C	A	SNP	KCNH7	NM_033272	human	genbank	57_37b	-1	reviewed	missense	c.1747	p.D583Y	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors	
KDR	3791	genome.wustl.edu	37	4	55973912	55973912	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	55973912	55973912	G	A	SNP	KDR	NM_002253	human	genbank	57_37b	-1	reviewed	silent	c.1404	p.N468	0.064	superfamily_SSF48726,HMMSmart_IG	superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
KIAA0391	9692	genome.wustl.edu	37	14	35742701	35742701	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	35742701	35742701	G	A	SNP	KIAA0391	NM_014672	human	genbank	57_37b	+1	provisional	missense	c.1681	p.D561N	1.000	NULL	NULL	-	no_errors	
KIF20B	9585	genome.wustl.edu	37	10	91497970	91497970	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	91497970	91497970	G	A	SNP	KIF20B	NM_016195	human	genbank	57_37b	+1	validated	silent	c.3252	p.L1084	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors	
LCA5L	150082	genome.wustl.edu	37	21	40795105	40795105	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	40795105	40795105	G	A	SNP	LCA5L	NM_152505	human	genbank	57_37b	-1	validated	nonsense	c.634	p.Q212*	0.926	NULL	NULL	-	no_errors	
LGALS4	3960	genome.wustl.edu	37	19	39292707	39292707	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39292707	39292707	G	A	SNP	LGALS4	NM_006149	human	genbank	57_37b	-1	reviewed	silent	c.750	p.S250	0.919	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin	-	no_errors	
LOC388630	388630	genome.wustl.edu	37	1	48459907	48459907	+	Silent	SNP	C	T	T	rs3814006	byCluster;byFrequency;by1000genomes	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	48459907	48459907	C	T	SNP	LOC388630	XM_371250	human	genbank	57_37b	-1	model	silent	c.465	p.A155	0.479	NULL	NULL	-		
LRTM1	57408	genome.wustl.edu	37	3	54959016	54959016	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	54959016	54959016	G	A	SNP	LRTM1	NM_020678	human	genbank	57_37b	-1	provisional	silent	c.234	p.T78	0.966	superfamily_L domain-like,HMMSmart_SM00369	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082	-	no_errors	
MCF2L	23263	genome.wustl.edu	37	13	113699676	113699676	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	113699676	113699676	G	T	SNP	MCF2L	NM_001112732	human	genbank	57_37b	+1	validated	splice_site	c.540+1	e4+1	0.998	-	-	-	no_errors	
MED13	9969	genome.wustl.edu	37	17	60040309	60040309	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	60040309	60040309	C	G	SNP	MED13	NM_005121	human	genbank	57_37b	-1	reviewed	missense	c.4868	p.G1623A	1.000	HMMPfam_TRAP_240kDa	HMMPfam_TRAP_240kDa	-	no_errors	
MKI67	4288	genome.wustl.edu	37	10	129913245	129913245	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	129913245	129913245	G	C	SNP	MKI67	NM_002417	human	genbank	57_37b	-1	reviewed	missense	c.1427	p.S476C	0.039	NULL	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMPfam_K167R	-	no_errors	
MLL	4297	genome.wustl.edu	37	11	118375784	118375784	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118375784	118375784	G	A	SNP	MLL	NM_005933	human	genbank	57_37b	+1	validated	silent	c.9168	p.P3056	0.291	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,PatternScan_RECR,HMMSmart_SM00297,superfamily_Bromodomain,HMMPfam_FYRN,HMMSmart_SM00541,PatternScan_EF_HAND_1,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors	
MLL3	58508	genome.wustl.edu	37	7	151932949	151932949	+	Missense_Mutation	SNP	C	C	A	rs77173318	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151932949	151932949	C	A	SNP	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	missense	c.2722	p.G908C	1.000	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-		
MON1A	84315	genome.wustl.edu	37	3	49947969	49947969	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49947969	49947969	G	A	SNP	MON1A	NM_032355	human	genbank	57_37b	-1	validated	missense	c.1253	p.S418F	1.000	HMMPfam_Mon1	HMMPfam_Mon1	-	no_errors	
MRE11A	4361	genome.wustl.edu	37	11	94192723	94192723	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	94192723	94192723	C	G	SNP	MRE11A	NM_005591	human	genbank	57_37b	-1	reviewed	missense	c.1351	p.E451Q	1.000	HMMPfam_Mre11_DNA_bind	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases,HMMPfam_Mre11_DNA_bind	-	no_errors	
MTUS2	0	genome.wustl.edu	37	13	29600997	29600997	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	29600997	29600997	C	T	SNP	MTUS2	NM_001033602	human	genbank	57_37b	+1	validated	missense	c.2192	p.P731L	0.998	NULL	NULL	-	no_errors	
MYO10	4651	genome.wustl.edu	37	5	16711286	16711286	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	16711286	16711286	C	T	SNP	MYO10	NM_012334	human	genbank	57_37b	-1	validated	silent	c.1998	p.V666	0.999	superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head	PatternScan_FERM_1,PatternScan_FERM_2,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_MyTH4,HMMPfam_MyTH4,HMMSmart_B41,HMMPfam_RA,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors	
NR3C2	4306	genome.wustl.edu	37	4	149075853	149075853	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	149075853	149075853	G	A	SNP	NR3C2	NM_000901	human	genbank	57_37b	-1	reviewed	silent	c.2214	p.P738	0.000	superfamily_Str_ncl_receptor	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors	
NR4A1	3164	genome.wustl.edu	37	12	52448796	52448796	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52448796	52448796	G	A	SNP	NR4A1	NM_002135	human	genbank	57_37b	+1	reviewed	silent	c.684	p.T228	0.000	NULL	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors	
NRBP1	29959	genome.wustl.edu	37	2	27663559	27663559	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27663559	27663559	G	C	SNP	NRBP1	NM_013392	human	genbank	57_37b	+1	validated	missense	c.1183	p.E395Q	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase	-	no_errors	
NRP2	8828	genome.wustl.edu	37	2	206608200	206608200	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	206608200	206608200	G	A	SNP	NRP2	NM_201266	human	genbank	57_37b	+1	reviewed	missense	c.1565	p.R522H	1.000	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00137,HMMPfam_MAM	-	no_errors	
PAPSS1	9061	genome.wustl.edu	37	4	108578129	108578129	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	108578129	108578129	C	T	SNP	PAPSS1	NM_005443	human	genbank	57_37b	-1	validated	missense	c.818	p.G273D	1.000	superfamily_PUA domain-like	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_APS_kinase,superfamily_PUA domain-like,HMMPfam_ATP-sulfurylase,superfamily_Nucleotidylyl transferase	-	no_errors	
PCDH11X	27328	genome.wustl.edu	37	X	91134233	91134233	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	91134233	91134233	G	T	SNP	PCDH11X	NM_032968	human	genbank	57_37b	+1	reviewed	silent	c.2994	p.V998	1.000	HMMPfam_Protocadherin	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Protocadherin	-	no_errors	
PCDHB1	29930	genome.wustl.edu	37	5	140433272	140433272	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140433272	140433272	C	T	SNP	PCDHB1	NM_013340	human	genbank	57_37b	+1	reviewed	silent	c.2217	p.N739	0.126	NULL	HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PCDHB6	56130	genome.wustl.edu	37	5	140530673	140530673	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140530673	140530673	G	A	SNP	PCDHB6	NM_018939	human	genbank	57_37b	+1	reviewed	missense	c.835	p.A279T	0.001	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors	
PHOSPHO1	162466	genome.wustl.edu	37	17	47302390	47302392	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	47302390	47302392	AGG	-	DEL	PHOSPHO1	NM_001143804	human	genbank	57_37b	-1	validated	in_frame_del	c.97_95	p.S32in_frame_del	0.092:0.143:0.249	NULL	superfamily_HAD-like,HMMPfam_Put_Phosphatase	(deletion:cds_exon[47301608,47302486])	no_errors	
PI4KA	5297	genome.wustl.edu	37	22	21096566	21096566	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	21096566	21096566	G	A	SNP	PI4KA	NM_058004	human	genbank	57_37b	-1	reviewed	silent	c.3517	p.L1173	1.000	NULL	superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PLCG1	5335	genome.wustl.edu	37	20	39793935	39793935	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	39793935	39793935	G	T	SNP	PLCG1	NM_002660	human	genbank	57_37b	+1	reviewed	missense	c.1437	p.M479I	0.774	superfamily_PLC-like_Pdiesterase_TIM-brl	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,PatternScan_EF_HAND_1,superfamily_SSF47473,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
POLE	5426	genome.wustl.edu	37	12	133220066	133220066	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	133220066	133220066	G	C	SNP	POLE	NM_006231	human	genbank	57_37b	-1	validated	silent	c.4371	p.G1457	1.000	NULL	superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,HMMPfam_DNA_pol_B,superfamily_SSF56672,HMMPfam_DUF1744	-	no_errors	
RAB3C	115827	genome.wustl.edu	37	5	58021869	58021869	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	58021869	58021869	C	A	SNP	RAB3C	NM_138453	human	genbank	57_37b	+1	provisional	missense	c.293	p.A98D	1.000	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	-	no_errors	
RBM34	23029	genome.wustl.edu	37	1	235301419	235301419	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	235301419	235301419	G	A	SNP	RBM34	NM_015014	human	genbank	57_37b	-1	validated	nonsense	c.757	p.Q253*	0.006	superfamily_RNA-binding domain RBD,HMMSmart_SM00360	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
RGAG1	57529	genome.wustl.edu	37	X	109695584	109695584	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	109695584	109695584	T	C	SNP	RGAG1	NM_020769	human	genbank	57_37b	+1	validated	missense	c.1739	p.M580T	0.093	NULL	HMMPfam_Retrotrans_gag	-	no_errors	
SACS	26278	genome.wustl.edu	37	13	23905513	23905513	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	23905513	23905513	G	A	SNP	SACS	NM_014363	human	genbank	57_37b	-1	reviewed	silent	c.12502	p.L4168	0.997	NULL	superfamily_Ubiquitin-like,HMMPfam_ubiquitin,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,superfamily_Chaperone J-domain,HMMPfam_HEPN,superfamily_Nucleotidyltransferase substrate binding subunit/domain,HMMSmart_SM00748	-	no_errors	
SHC1	6464	genome.wustl.edu	37	1	154938529	154938529	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154938529	154938529	G	C	SNP	SHC1	NM_001130040	human	genbank	57_37b	-1	validated	missense	c.1280	p.S427C	1.000	NULL	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors	
SIRT1	23411	genome.wustl.edu	37	10	69672725	69672725	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	69672725	69672725	G	A	SNP	SIRT1	NM_001142498	human	genbank	57_37b	+1	reviewed	missense	c.967	p.G323R	1.000	NULL	HMMPfam_SIR2,superfamily_DHS-like NAD/FAD-binding domain	-	no_errors	
SMARCD3	6604	genome.wustl.edu	37	7	150937577	150937577	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150937577	150937577	T	C	SNP	SMARCD3	NM_001003801	human	genbank	57_37b	-1	reviewed	missense	c.971	p.E324G	1.000	superfamily_SWIB/MDM2 domain,HMMPfam_SWIB,HMMSmart_SM00151	superfamily_SWIB/MDM2 domain,HMMPfam_SWIB,HMMSmart_SM00151	-	no_errors	
SPANXN5	494197	genome.wustl.edu	37	X	52825543	52825543	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	52825543	52825543	C	G	SNP	SPANXN5	NM_001009616	human	genbank	57_37b	-1	validated	missense	c.204	p.E68D	0.140	NULL	HMMPfam_SPAN-X	-	no_errors	
SPARCL1	8404	genome.wustl.edu	37	4	88415533	88415533	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	88415533	88415533	A	G	SNP	SPARCL1	NM_001128310	human	genbank	57_37b	-1	validated	missense	c.419	p.F140S	0.004	NULL	HMMSmart_SM00274,HMMPfam_FOLN,PatternScan_OSTEONECTIN_1,HMMSmart_SM00280,HMMPfam_Kazal_1,superfamily_Kazal-type serine protease inhibitors,HMMPfam_SPARC_Ca_bdg,superfamily_EF-hand,PatternScan_OSTEONECTIN_2,PatternScan_EF_HAND_1	-	no_errors	
SREBF2	6721	genome.wustl.edu	37	22	42271676	42271676	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	42271676	42271676	C	G	SNP	SREBF2	NM_004599	human	genbank	57_37b	+1	reviewed	missense	c.1334	p.S445C	1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors	
SRRM4	84530	genome.wustl.edu	37	12	119419693	119419693	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	119419693	119419693	G	A	SNP	SRRM4	NM_194286	human	genbank	57_37b	+1	validated	silent	c.6	p.A2	0.977	NULL	NULL	-	no_errors	
STAG1	10274	genome.wustl.edu	37	3	136062775	136062775	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	136062775	136062775	T	C	SNP	STAG1	NM_005862	human	genbank	57_37b	-1	reviewed	silent	c.3345	p.P1115	0.961	NULL	superfamily_ARM-type_fold,HMMPfam_STAG	-	no_errors	
STAG1	10274	genome.wustl.edu	37	3	136076644	136076644	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	136076644	136076644	C	G	SNP	STAG1	NM_005862	human	genbank	57_37b	-1	reviewed	missense	c.2983	p.E995Q	1.000	NULL	HMMPfam_STAG,superfamily_ARM-type_fold	-	no_errors	
TMCO7	79613	genome.wustl.edu	37	16	68943146	68943147	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68943146	68943147	AG	-	DEL	TMCO7	NM_024562	human	genbank	57_37b	+1	validated	frame_shift_del	c.1833_1834	p.E612fs	0.996:0.996	superfamily_ARM repeat,HMMPfam_DUF2435	superfamily_ARM repeat,HMMPfam_DUF2435,HMMPfam_HEAT,HMMPfam_DUF2411	(deletion:cds_exon[68943114,68943305])	no_errors	
TNN	63923	genome.wustl.edu	37	1	175096180	175096180	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	175096180	175096180	G	A	SNP	TNN	NM_022093	human	genbank	57_37b	+1	validated	missense	c.3004	p.G1002S	0.999	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	PatternScan_EGF_1,HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin,PatternScan_EGF_2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7577067	7577085	+	Frame_Shift_Del	DEL	TGCGGAGATTCTCTTCCTC	TGCGGAGATTCTCTTCCTC	-	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	TGCGGAGATTCTCTTCCTC	TGCGGAGATTCTCTTCCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577067	7577085	TGCGGAGATTCTCTTCCTC	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.871_853	p.E285fs	1.000:1.000:0.995:1.000:0.998:0.995:0.983:0.990:0.994:0.991:0.910:1.000:1.000:1.000:1.000:1.000:0.986:1.000:0.995	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7577019,7577155])	no_errors	
TP53	7157	genome.wustl.edu	37	17	7577082	7577082	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577082	7577082	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.856	p.E286K	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TSPYL2	64061	genome.wustl.edu	37	X	53113974	53113974	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	53113974	53113974	T	C	SNP	TSPYL2	NM_022117	human	genbank	57_37b	+1	reviewed	missense	c.923	p.M308T	1.000	HMMPfam_NAP	HMMPfam_NAP	-	no_errors	
TUBB4	10382	genome.wustl.edu	37	19	6495820	6495820	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6495820	6495820	C	T	SNP	TUBB4	NM_006087	human	genbank	57_37b	-1	provisional	silent	c.690	p.S230	0.912	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors	
VWF	7450	genome.wustl.edu	37	12	6091108	6091108	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6091108	6091108	C	T	SNP	VWF	NM_000552	human	genbank	57_37b	-1	reviewed	silent	c.7131	p.P2377	0.000	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_VWC,PatternScan_VWFC_1,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors	
WBSCR17	64409	genome.wustl.edu	37	7	70886058	70886058	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	70886058	70886058	G	A	SNP	WBSCR17	NM_022479	human	genbank	57_37b	+1	reviewed	nonsense	c.929	p.W310*	1.000	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458	-	no_errors	
WDR7	23335	genome.wustl.edu	37	18	54350050	54350050	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	54350050	54350050	C	T	SNP	WDR7	NM_015285	human	genbank	57_37b	+1	reviewed	silent	c.486	p.S162	1.000	superfamily_Prolyl oligopeptidase N-terminal domain	HMMSmart_SM00320,HMMPfam_WD40,superfamily_Prolyl oligopeptidase N-terminal domain,PatternScan_WD_REPEATS_1,superfamily_WD40 repeat-like	-	no_errors	
ZFC3H1	196441	genome.wustl.edu	37	12	72013172	72013172	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	72013172	72013172	A	G	SNP	ZFC3H1	NM_144982	human	genbank	57_37b	-1	validated	silent	c.5067	p.L1689	1.000	NULL	HMMPfam_zf-C3H1,superfamily_Protein prenylyltransferase,HMMSmart_SM00386	-	no_errors	
ZFP3	124961	genome.wustl.edu	37	17	4996237	4996237	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4996237	4996237	C	T	SNP	ZFP3	NM_153018	human	genbank	57_37b	+1	validated	nonsense	c.1438	p.Q480*	0.069	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF217	7764	genome.wustl.edu	37	20	52198134	52198134	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	52198134	52198134	G	A	SNP	ZNF217	NM_006526	human	genbank	57_37b	-1	validated	missense	c.1232	p.S411F	0.064	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors	
ZNF3	7551	genome.wustl.edu	37	7	99662436	99662436	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99662436	99662436	C	T	SNP	ZNF3	NM_017715	human	genbank	57_37b	-1	validated	missense	c.371	p.S124N	0.004	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB	-	no_errors	
ZZEF1	23140	genome.wustl.edu	37	17	3961435	3961435	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18U-01	TCGA-BH-A18U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	3961435	3961435	G	C	SNP	ZZEF1	NM_015113	human	genbank	57_37b	-1	validated	missense	c.5018	p.A1673G	1.000	NULL	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,superfamily_Galactose-binding domain-like,HMMPfam_APC10,superfamily_Spermadhesin CUB domain,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1	-	no_errors	
