Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABP1	26	genome.wustl.edu	37	7	150554584	150554584	+	Silent	SNP	C	C	T	rs41465145	byCluster;byFrequency;by1000genomes	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150554584	150554584	C	T	SNP	ABP1	NM_001091	human	genbank	57_37b	+1	reviewed	silent	c.1026	p.G342	0.000	superfamily_Amine oxidase catalytic domain,HMMPfam_Cu_amine_oxid	superfamily_Amine oxidase N-terminal region,HMMPfam_Cu_amine_oxidN2,HMMPfam_Cu_amine_oxidN3,superfamily_Amine oxidase catalytic domain,HMMPfam_Cu_amine_oxid,PatternScan_COPPER_AMINE_OXID_1,PatternScan_COPPER_AMINE_OXID_2	-		
AGAP3	116988	genome.wustl.edu	37	7	150835325	150835325	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150835325	150835325	C	T	SNP	AGAP3	NM_031946	human	genbank	57_37b	+1	validated	missense	c.1591	p.R531C	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Miro,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Ankyrin repeat,HMMPfam_Ank	-	no_errors	
AKAP1	8165	genome.wustl.edu	37	17	55183615	55183615	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	55183615	55183615	G	C	SNP	AKAP1	NM_003488	human	genbank	57_37b	+1	reviewed	missense	c.790	p.A264P	0.001	NULL	HMMPfam_RII_binding_1,HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333	-	no_errors	
AKAP1	8165	genome.wustl.edu	37	17	55193475	55193475	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	55193475	55193475	C	T	SNP	AKAP1	NM_003488	human	genbank	57_37b	+1	reviewed	missense	c.2285	p.T762M	0.974	HMMSmart_SM00333,HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT	HMMSmart_SM00333,HMMSmart_SM00322,HMMPfam_TUDOR,HMMPfam_KH_1,HMMPfam_RII_binding_1,superfamily_Eukaryotic type KH-domain (KH-domain type I),superfamily_Tudor/PWWP/MBT	-	no_errors	
AKR1B1	231	genome.wustl.edu	37	7	134136358	134136358	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	134136358	134136358	C	A	SNP	AKR1B1	NM_001628	human	genbank	57_37b	-1	reviewed	nonsense	c.214	p.E72*	1.000	superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red	superfamily_NAD(P)-linked oxidoreductase,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_1,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3	-	no_errors	
ALDH1L2	160428	genome.wustl.edu	37	12	105443688	105443688	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	105443688	105443688	G	A	SNP	ALDH1L2	NM_001034173	human	genbank	57_37b	-1	reviewed	nonsense	c.1684	p.Q562*	1.000	superfamily_ALDH-like,HMMPfam_Aldedh	HMMPfam_Formyl_trans_N,superfamily_Formyltransferase,PatternScan_GART,superfamily_FMT C-terminal domain-like,HMMPfam_Formyl_trans_C,PatternScan_PHOSPHOPANTETHEINE,superfamily_ALDH-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors	
ANKRD27	84079	genome.wustl.edu	37	19	33134217	33134217	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	33134217	33134217	G	A	SNP	ANKRD27	NM_032139	human	genbank	57_37b	-1	validated	silent	c.681	p.Y227	0.594	superfamily_SSF109993	superfamily_SSF109993,HMMSmart_VPS9,HMMPfam_VPS9,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors	
ASH1L	55870	genome.wustl.edu	37	1	155348180	155348182	+	Frame_Shift_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155348180	155348182	TCT	-	DEL	ASH1L	NM_018489	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.6224	p.N2075fs	1.000	superfamily_SET domain	HMMSmart_SM00384,HMMPfam_AT_hook,superfamily_SET domain,HMMSmart_SM00570,HMMPfam_SET,HMMSmart_SM00317,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_BAH,HMMSmart_SM00439	(deletion:cds_exon[155348072,155348180], intron[155348181,155348293])	no_errors	
BRD1	23774	genome.wustl.edu	37	22	50169791	50169791	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50169791	50169791	G	A	SNP	BRD1	NM_014577	human	genbank	57_37b	-1	reviewed	silent	c.2745	p.S915	1.000	NULL	HMMPfam_EPL1,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1,superfamily_SSF63748,HMMSmart_PWWP	-	no_errors	
CCDC18	343099	genome.wustl.edu	37	1	93646433	93646433	+	Silent	SNP	T	T	C	rs2255722	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-C8-A12U-01	TCGA-C8-A12U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	93646433	93646433	T	C	SNP	CCDC18	NM_206886	human	genbank	57_37b	+1	validated	silent	c.346	p.L116	0.094	NULL	superfamily_Prefoldin	-		
CCDC73	493860	genome.wustl.edu	37	11	32636346	32636346	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	32636346	32636346	C	T	SNP	CCDC73	NM_001008391	human	genbank	57_37b	-1	validated	silent	c.1518	p.T506	0.004	NULL	NULL	-	no_errors	
CCDC82	79780	genome.wustl.edu	37	11	96117839	96117839	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	96117839	96117839	C	A	SNP	CCDC82	NM_024725	human	genbank	57_37b	-1	validated	missense	c.73	p.D25Y	1.000	NULL	NULL	-	no_errors	
CCNT1	904	genome.wustl.edu	37	12	49089558	49089558	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49089558	49089558	C	T	SNP	CCNT1	NM_001240	human	genbank	57_37b	-1	reviewed	missense	c.761	p.R254H	1.000	superfamily_Cyclin_like	PatternScan_CYCLINS,superfamily_Cyclin_like,HMMPfam_Cyclin_N,HMMSmart_CYCLIN	-	no_errors	
CDH12	1010	genome.wustl.edu	37	5	21802509	21802509	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	21802509	21802509	C	G	SNP	CDH12	NM_004061	human	genbank	57_37b	-1	reviewed	missense	c.1023	p.K341N	1.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CHAC1	79094	genome.wustl.edu	37	15	41245676	41245676	+	Silent	SNP	G	G	A	rs11557249	byCluster;byFrequency;by1000genomes	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	41245676	41245676	G	A	SNP	CHAC1	NM_024111	human	genbank	57_37b	+1	validated	silent	c.21	p.E7	0.998	NULL	superfamily_BtrG-like (Pfam 03674),HMMPfam_ChaC	-		
CHD3	1107	genome.wustl.edu	37	17	7801857	7801859	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7801857	7801859	AAG	-	DEL	CHD3	NM_001005271	human	genbank	57_37b	+1	reviewed	in_frame_del	c.2272_2274	p.K761in_frame_del	1.000:1.000:1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_CHDNT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00298,superfamily_Chromo domain-like,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_CHROMO_1,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	(deletion:cds_exon[7801814,7801913])	no_errors	
CHD5	26038	genome.wustl.edu	37	1	6209375	6209375	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	6209375	6209375	G	A	SNP	CHD5	NM_015557	human	genbank	57_37b	-1	provisional	silent	c.1092	p.A364	0.997	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,HMMSmart_RING	PatternScan_CHROMO_1,HMMPfam_CHDNT,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,HMMSmart_RING,superfamily_Chromodomain-like,HMMSmart_CHROMO,superfamily_SSF52540,HMMPfam_Chromo,HMMSmart_DEXDc,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors	
CHST8	64377	genome.wustl.edu	37	19	34263265	34263265	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	34263265	34263265	G	A	SNP	CHST8	NM_001127895	human	genbank	57_37b	+1	validated	missense	c.572	p.R191H	0.988	HMMPfam_Sulfotransfer_2	HMMPfam_Sulfotransfer_2	-	no_errors	
CPSF1	29894	genome.wustl.edu	37	8	145620395	145620395	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145620395	145620395	C	T	SNP	CPSF1	NM_013291	human	genbank	57_37b	-1	validated	missense	c.3190	p.E1064K	1.000	NULL	HMMPfam_CPSF_A	-	no_errors	
CSGALNACT1	55790	genome.wustl.edu	37	8	19277864	19277864	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	19277864	19277864	C	T	SNP	CSGALNACT1	NM_001130518	human	genbank	57_37b	-1	validated	silent	c.1119	p.L373	1.000	HMMPfam_CHGN,superfamily_SSF53448	HMMPfam_CHGN,superfamily_SSF53448	-	no_errors	
DBN1	1627	genome.wustl.edu	37	5	176899140	176899140	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176899140	176899140	T	G	SNP	DBN1	NM_080881	human	genbank	57_37b	-1	reviewed	missense	c.72	p.R24S	0.999	HMMSmart_ADF,HMMPfam_Cofilin_ADF	HMMSmart_ADF,HMMPfam_Cofilin_ADF,superfamily_SSF55753	-	no_errors	
DNAH9	1770	genome.wustl.edu	37	17	11572453	11572453	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	11572453	11572453	C	T	SNP	DNAH9	NM_001372	human	genbank	57_37b	+1	reviewed	missense	c.2804	p.P935L	0.999	NULL	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2	-	no_errors	
EHD2	30846	genome.wustl.edu	37	19	48239666	48239666	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	48239666	48239666	C	T	SNP	EHD2	NM_014601	human	genbank	57_37b	+1	reviewed	missense	c.956	p.P319L	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,superfamily_EF-hand,HMMSmart_SM00027,PatternScan_EF_HAND_1	-	no_errors	
ENSG00000214571	0	genome.wustl.edu	37	19	2524925	2524925	+	Missense_Mutation	SNP	A	A	C	rs8112435	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-C8-A12U-01	TCGA-C8-A12U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	2524925	2524925	A	C	SNP	ENSG00000214571	ENST00000398605	human	ensembl	57_37b	-1	known	missense	c.17	p.L6R	0.001	NULL	NULL	-		
ENSG00000246620	0	genome.wustl.edu	37	6	159461931	159461931	+	RNA	SNP	C	C	T	rs2073138	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	159461931	159461931	C	T	SNP	ENSG00000246620	ENST00000501526	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-		
ERV3	2086	genome.wustl.edu	37	7	64453178	64453178	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	64453178	64453178	C	T	SNP	ERV3	NM_001007253	human	genbank	57_37b	-1	reviewed	missense	c.227	p.G76D	0.828	NULL	NULL	-	no_errors	
EYA1	2138	genome.wustl.edu	37	8	72234498	72234498	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	72234498	72234498	C	T	SNP	EYA1	NM_000503	human	genbank	57_37b	-1	reviewed	missense	c.208	p.G70R	1.000	NULL	HMMPfam_Hydrolase	-	no_errors	
FGFRL1	53834	genome.wustl.edu	37	4	1018271	1018271	+	Silent	SNP	T	T	C	rs4647946	by1000genomes	TCGA-C8-A12U-01	TCGA-C8-A12U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1018271	1018271	T	C	SNP	FGFRL1	NM_001004356	human	genbank	57_37b	+1	reviewed	silent	c.891	p.D297	0.650	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG	-		
HIF3A	64344	genome.wustl.edu	37	19	46811984	46811984	+	Silent	SNP	A	A	G	rs2311054	byCluster;by1000genomes	TCGA-C8-A12U-01	TCGA-C8-A12U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46811984	46811984	A	G	SNP	HIF3A	NM_152795	human	genbank	57_37b	+1	reviewed	silent	c.513	p.T171	0.632	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMPfam_PAS_3,HMMSmart_SM00086	-		
L3MBTL	26013	genome.wustl.edu	37	20	42164575	42164575	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	42164575	42164575	C	T	SNP	L3MBTL	NM_015478	human	genbank	57_37b	+1	reviewed	missense	c.1654	p.R552W	1.000	HMMPfam_zf-C2HC,superfamily_CCHHC domain	HMMPfam_zf-C2HC,HMMPfam_MBT,HMMSmart_SM00561,superfamily_CCHHC domain,superfamily_Tudor/PWWP/MBT	-	no_errors	
LIPH	200879	genome.wustl.edu	37	3	185252919	185252919	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	185252919	185252919	G	A	SNP	LIPH	NM_139248	human	genbank	57_37b	-1	reviewed	silent	c.51	p.D17	0.667	superfamily_SSF53474	PatternScan_LIPASE_SER,superfamily_SSF53474,HMMPfam_Lipase	-	no_errors	
LLGL1	3996	genome.wustl.edu	37	17	18145941	18145941	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18145941	18145941	G	C	SNP	LLGL1	NM_004140	human	genbank	57_37b	+1	reviewed	missense	c.3115	p.G1039R	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_LLGL,HMMPfam_WD40	-	no_errors	
LOC100288367	0	genome.wustl.edu	37	15	84949664	84949664	+	Missense_Mutation	SNP	A	A	G	rs11632988	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-C8-A12U-01	TCGA-C8-A12U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	84949664	84949664	A	G	SNP	LOC100288367	XM_002343378	human	genbank	57_37b	+1	model	missense	c.497	p.Q166R	0.983	NULL	NULL	-		
MAGI3	260425	genome.wustl.edu	37	1	114184725	114184725	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	114184725	114184725	C	G	SNP	MAGI3	NM_001142782	human	genbank	57_37b	+1	validated	nonsense	c.1553	p.S518*	0.963	NULL	superfamily_PDZ,HMMSmart_PDZ,HMMSmart_GuKc,superfamily_SSF52540,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_PDZ,PatternScan_GLY_RADICAL_1	-	no_errors	
MAP3K6	9064	genome.wustl.edu	37	1	27685006	27685006	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	27685006	27685006	G	A	SNP	MAP3K6	NM_004672	human	genbank	57_37b	-1	reviewed	nonsense	c.2680	p.R894*	0.959	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SAM/Pointed domain	-	no_errors	
MORN1	79906	genome.wustl.edu	37	1	2268205	2268205	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	2268205	2268205	G	A	SNP	MORN1	NM_024848	human	genbank	57_37b	-1	provisional	missense	c.1121	p.P374L	0.347	NULL	superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain,HMMSmart_SM00698,HMMPfam_MORN	-	no_errors	
MSN	4478	genome.wustl.edu	37	X	64955188	64955188	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	64955188	64955188	G	A	SNP	MSN	NM_002444	human	genbank	57_37b	+1	reviewed	missense	c.855	p.M285I	1.000	superfamily_SSF50729,HMMPfam_FERM_C	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C,HMMPfam_ERM,superfamily_Moesin	-	no_errors	
NCAM1	4684	genome.wustl.edu	37	11	113130919	113130919	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	113130919	113130919	G	A	SNP	NCAM1	ENST00000401611	human	ensembl	57_37b	+1	known	missense	c.1726	p.V576I	1.000	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors	
OSBPL2	9885	genome.wustl.edu	37	20	60859166	60859166	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60859166	60859166	T	G	SNP	OSBPL2	NM_144498	human	genbank	57_37b	+1	reviewed	missense	c.937	p.S313A	0.013	HMMPfam_Oxysterol_BP	HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors	
PDE4B	5142	genome.wustl.edu	37	1	66838015	66838015	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	66838015	66838015	T	C	SNP	PDE4B	NM_001037341	human	genbank	57_37b	+1	reviewed	missense	c.1865	p.I622T	1.000	superfamily_HD-domain/PDEase-like,HMMPfam_PDEase_I	superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-C8-A12U-01	TCGA-C8-A12U-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
RANBP3	8498	genome.wustl.edu	37	19	5925701	5925701	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	5925701	5925701	G	C	SNP	RANBP3	NM_007322	human	genbank	57_37b	-1	reviewed	missense	c.861	p.H287Q	0.988	NULL	superfamily_PH domain-like,HMMSmart_SM00160,HMMPfam_Ran_BP1	-	no_errors	
RBM33	155435	genome.wustl.edu	37	7	155532539	155532539	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	155532539	155532539	C	T	SNP	RBM33	NM_053043	human	genbank	57_37b	+1	validated	missense	c.1868	p.P623L	0.003	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360	-	no_errors	
RPS6KA5	9252	genome.wustl.edu	37	14	91341643	91341643	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	91341643	91341643	C	T	SNP	RPS6KA5	NM_004755	human	genbank	57_37b	-1	validated	missense	c.1898	p.S633N	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors	
RYR2	6262	genome.wustl.edu	37	1	237608817	237608817	+	Silent	SNP	T	T	C	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237608817	237608817	T	C	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	silent	c.1287	p.F429	0.994	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SCYL3	57147	genome.wustl.edu	37	1	169823868	169823868	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	169823868	169823868	T	C	SNP	SCYL3	NM_181093	human	genbank	57_37b	-1	validated	missense	c.1712	p.D571G	0.990	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
SFRS17A	8227	genome.wustl.edu	37	X	1719897	1719897	+	Missense_Mutation	SNP	C	G	G	rs28661622	byCluster	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	1719897	1719897	C	G	SNP	SFRS17A	NM_005088	human	genbank	57_37b	+1	validated	missense	c.1498	p.P500A	0.000	NULL	NULL	-		
SGEF	26084	genome.wustl.edu	37	3	153840162	153840162	+	Silent	SNP	C	C	T	rs13073165	byCluster;byFrequency;by1000genomes	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	153840162	153840162	C	T	SNP	SGEF	NM_015595	human	genbank	57_37b	+1	validated	silent	c.381	p.S127	0.002	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1	-		
SH3KBP1	30011	genome.wustl.edu	37	X	19854375	19854375	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	19854375	19854375	G	A	SNP	SH3KBP1	NM_031892	human	genbank	57_37b	-1	validated	silent	c.30	p.Y10	1.000	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors	
SMARCC2	6601	genome.wustl.edu	37	12	56558356	56558356	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56558356	56558356	C	T	SNP	SMARCC2	NM_003075	human	genbank	57_37b	-1	reviewed	missense	c.3299	p.G1100D	1.000	NULL	superfamily_BRCT domain,HMMSmart_SM00298,HMMPfam_SWIRM,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors	
SMPD2	6610	genome.wustl.edu	37	6	109763931	109763931	+	Missense_Mutation	SNP	G	G	A	rs117520114	by1000genomes	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	109763931	109763931	G	A	SNP	SMPD2	ENST00000458487	human	ensembl	57_37b	+1	known	missense	c.158	p.R53H	0.029	HMMPfam_Exo_endo_phos	HMMPfam_Exo_endo_phos,superfamily_DNase I-like	-		
SSX6	280657	genome.wustl.edu	37	X	47969636	47969636	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47969636	47969636	C	T	SNP	SSX6	ENST00000304314	human	ensembl	57_37b	+1	known	missense	c.113	p.T38I	0.006	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,HMMPfam_SSXRD	-	no_errors	
TCF4	6925	genome.wustl.edu	37	18	52896202	52896202	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	52896202	52896202	G	A	SNP	TCF4	NM_001083962	human	genbank	57_37b	-1	reviewed	silent	c.1755	p.N585	0.998	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors	
TRIM64B	0	genome.wustl.edu	37	11	89604106	89604106	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	89604106	89604106	C	A	SNP	TRIM64B	ENST00000329862	human	ensembl	57_37b	-1	known	missense	c.1033	p.D345Y	0.884	HMMPfam_SPRY	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_SPRY	-	no_errors	
VWF	7450	genome.wustl.edu	37	12	6080875	6080875	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6080875	6080875	C	G	SNP	VWF	NM_000552	human	genbank	57_37b	-1	reviewed	missense	c.7438	p.G2480R	1.000	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_VWC,PatternScan_VWFC_1,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors	
YIF1A	10897	genome.wustl.edu	37	11	66055109	66055109	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66055109	66055109	G	T	SNP	YIF1A	NM_020470	human	genbank	57_37b	-1	validated	silent	c.387	p.P129	0.696	HMMPfam_YIF1	HMMPfam_YIF1	-	no_errors	
ZBTB40	9923	genome.wustl.edu	37	1	22839582	22839582	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	22839582	22839582	C	T	SNP	ZBTB40	NM_001083621	human	genbank	57_37b	+1	validated	missense	c.2627	p.A876V	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZSWIM4	65249	genome.wustl.edu	37	19	13936517	13936517	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12U-01	TCGA-C8-A12U-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	13936517	13936517	T	G	SNP	ZSWIM4	NM_023072	human	genbank	57_37b	+1	validated	missense	c.2018	p.L673R	1.000	NULL	HMMPfam_SWIM	-	no_errors	
