Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431	human	genbank	57_37b	-1	reviewed	missense	c.49	p.E17K	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-		
ANKRD24	170961	genome.wustl.edu	37	19	4217956	4217956	+	Silent	SNP	A	A	G	rs6510794	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-D8-A141-01	TCGA-D8-A141-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4217956	4217956	A	G	SNP	ANKRD24	NM_133475	human	genbank	57_37b	+1	provisional	silent	c.2799	p.A933	0.936	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-		
ARHGAP6	395	genome.wustl.edu	37	X	11157535	11157535	+	Missense_Mutation	SNP	G	G	C	rs1009758	byCluster;by2Hit2Allele;by1000genomes	TCGA-D8-A141-01	TCGA-D8-A141-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	11157535	11157535	G	C	SNP	ARHGAP6	NM_013427	human	genbank	57_37b	-1	reviewed	missense	c.2373	p.D791E	0.023	NULL	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-		
C7orf27	221927	genome.wustl.edu	37	7	2580914	2580914	+	Missense_Mutation	SNP	C	C	T	rs62442586	byCluster;byFrequency;by1000genomes	TCGA-D8-A141-01	TCGA-D8-A141-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2580914	2580914	C	T	SNP	C7orf27	ENST00000396970	human	ensembl	57_37b	-1	known	missense	c.637	p.G213S	0.000	NULL	NULL	-		
CCT6P1	0	genome.wustl.edu	37	7	65216099	65216099	+	RNA	SNP	G	G	A	rs4718273	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-D8-A141-01	TCGA-D8-A141-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	65216099	65216099	G	A	SNP	CCT6P1	NR_003110	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.000	-	-	-		
CLEC4F	165530	genome.wustl.edu	37	2	71046536	71046536	+	Silent	SNP	G	G	A	rs17006361	byCluster;byFrequency;by1000genomes	TCGA-D8-A141-01	TCGA-D8-A141-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	71046536	71046536	G	A	SNP	CLEC4F	NM_173535	human	genbank	57_37b	-1	validated	silent	c.219	p.A73	0.000	NULL	PatternScan_C_TYPE_LECTIN_1,superfamily_C-type_lectin_fold	-		
COBL	23242	genome.wustl.edu	37	7	51095504	51095504	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	51095504	51095504	G	T	SNP	COBL	NM_015198	human	genbank	57_37b	-1	validated	missense	c.3289	p.P1097T	0.845	NULL	HMMPfam_Cobl,HMMPfam_WH2,HMMSmart_SM00246	-	no_errors	
EIF2AK3	9451	genome.wustl.edu	37	2	88885398	88885398	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	88885398	88885398	C	A	SNP	EIF2AK3	NM_004836	human	genbank	57_37b	-1	reviewed	silent	c.1611	p.T537	0.884	NULL	superfamily_Quinoprotein alcohol dehydrogenase-like,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors	
ENSG00000199240	0	genome.wustl.edu	37	1	43662106	43662106	+	RNA	SNP	G	G	C	rs12122233	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-D8-A141-01	TCGA-D8-A141-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	43662106	43662106	G	C	SNP	ENSG00000199240	ENST00000362370	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.005	-	-	-		
GP1BA	2811	genome.wustl.edu	37	17	4837701	4837701	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4837701	4837701	C	G	SNP	GP1BA	NM_000173	human	genbank	57_37b	+1	reviewed	missense	c.1763	p.S588W	0.001	NULL	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT	-	no_errors	
GPKOW	27238	genome.wustl.edu	37	X	48978773	48978773	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48978773	48978773	G	T	SNP	GPKOW	NM_015698	human	genbank	57_37b	-1	provisional	missense	c.431	p.A144E	0.467	NULL	HMMSmart_G_patch,HMMPfam_G-patch,HMMSmart_KOW,HMMPfam_KOW	-	no_errors	
HIST1H2AE	3012	genome.wustl.edu	37	6	26217367	26217367	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26217367	26217367	G	A	SNP	HIST1H2AE	NM_021052	human	genbank	57_37b	+1	reviewed	silent	c.165	p.V55	1.000	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors	
KCNK2	3776	genome.wustl.edu	37	1	215408369	215408369	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	215408369	215408369	C	T	SNP	KCNK2	NM_001017425	human	genbank	57_37b	+1	reviewed	missense	c.1162	p.H388Y	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2	-	no_errors	
KIAA1543	57662	genome.wustl.edu	37	19	7682810	7682810	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	7682810	7682810	C	T	SNP	KIAA1543	NM_001080429	human	genbank	57_37b	+1	validated	missense	c.3698	p.S1233L	0.998	superfamily_PRC-barrel domain,HMMPfam_DUF1781	superfamily_Calponin-homology domain CH-domain,superfamily_PRC-barrel domain,HMMPfam_DUF1781	-	no_errors	
LOC100289222	0	genome.wustl.edu	37	6	146112348	146112348	+	Missense_Mutation	SNP	T	T	C	rs6931553	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-D8-A141-01	TCGA-D8-A141-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	146112348	146112348	T	C	SNP	LOC100289222	XM_002342653	human	genbank	57_37b	-1	model	missense	c.472	p.T158A	0.004	NULL	NULL	-		
NEK3	4752	genome.wustl.edu	37	13	52726763	52726763	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	52726763	52726763	T	-	DEL	NEK3	ENST00000258597	human	ensembl	57_37b	-1	known	frame_shift_del	c.374	p.H125fs	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00220,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ST	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00220,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[52726744,52726827])	no_errors	
PHLDA1	22822	genome.wustl.edu	37	12	76424952	76424952	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	76424952	76424952	C	G	SNP	PHLDA1	NM_007350	human	genbank	57_37b	-1	reviewed	missense	c.570	p.Q190H	0.996	superfamily_SSF50729,HMMSmart_PH	superfamily_SSF50729,HMMSmart_PH	-	no_errors	
RECQL4	9401	genome.wustl.edu	37	8	145739483	145739483	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145739483	145739483	C	T	SNP	RECQL4	ENST00000428558	human	ensembl	57_37b	-1	known	silent	c.1887	p.R629	0.998	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors	
RUNX1	861	genome.wustl.edu	37	21	36252853	36252853	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	36252853	36252853	C	G	SNP	RUNX1	NM_001754	human	genbank	57_37b	-1	reviewed	splice_site	c.508+1	e4+1	1.000	-	-	-	no_errors	
SLC46A1	113235	genome.wustl.edu	37	17	26732105	26732105	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	26732105	26732105	G	A	SNP	SLC46A1	NM_080669	human	genbank	57_37b	-1	reviewed	missense	c.610	p.R204W	0.340	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	superfamily_MFS general substrate transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_1	-	no_errors	
THNSL1	79896	genome.wustl.edu	37	10	25313006	25313006	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	25313006	25313006	G	T	SNP	THNSL1	NM_024838	human	genbank	57_37b	+1	validated	missense	c.854	p.G285V	0.674	superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SKI,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes,HMMPfam_PALP	-	no_errors	
TLR8	51311	genome.wustl.edu	37	X	12937272	12937272	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	12937272	12937272	A	G	SNP	TLR8	NM_138636	human	genbank	57_37b	+1	reviewed	missense	c.113	p.E38G	0.009	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRR_1,superfamily_SSF52047,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_TIR,HMMPfam_TIR	-	no_errors	
TRERF1	55809	genome.wustl.edu	37	6	42227276	42227276	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42227276	42227276	C	T	SNP	TRERF1	NM_033502	human	genbank	57_37b	-1	reviewed	silent	c.2070	p.P690	0.811	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors	
TRHDE	29953	genome.wustl.edu	37	12	72956762	72956762	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	72956762	72956762	C	G	SNP	TRHDE	NM_013381	human	genbank	57_37b	+1	reviewed	missense	c.1849	p.Q617E	1.000	NULL	superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE	-	no_errors	
TRIM11	81559	genome.wustl.edu	37	1	228582831	228582831	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228582831	228582831	C	T	SNP	TRIM11	NM_145214	human	genbank	57_37b	-1	reviewed	missense	c.982	p.G328S	0.044	HMMSmart_SM00589	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors	
ZMYM3	9203	genome.wustl.edu	37	X	70461089	70461089	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A141-01	TCGA-D8-A141-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70461089	70461089	T	C	SNP	ZMYM3	NM_005096	human	genbank	57_37b	-1	reviewed	missense	c.3908	p.Y1303C	1.000	NULL	HMMPfam_zf-FCS,HMMSmart_SM00746	-	no_errors	
ZNF204P	0	genome.wustl.edu	37	6	27327349	27327349	+	RNA	SNP	C	C	G	rs9357037	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-D8-A141-01	TCGA-D8-A141-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	27327349	27327349	C	G	SNP	ZNF204P	NR_002722	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-		
