Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ANKRD52	0	genome.wustl.edu	37	12	56649601	56649601	+	Silent	SNP	A	A	G	rs1274490	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56649601	56649601	A	G	SNP	ANKRD52	NM_173595	human	genbank	57_37b	-1	validated	silent	c.429	p.A143	0.970	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	HMMSmart_ANK,HMMPfam_Ank,superfamily_ANK	-		
ATP8B3	148229	genome.wustl.edu	37	19	1802626	1802626	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1802626	1802626	G	A	SNP	ATP8B3	NM_138813	human	genbank	57_37b	-1	reviewed	missense	c.923	p.A308V	0.888	superfamily_SSF81653,HMMPfam_E1-E2_ATPase	superfamily_SSF81653,HMMPfam_E1-E2_ATPase,superfamily_SSF56784,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Hydrolase_3,PatternScan_EF_HAND_1	-	no_errors	
C14orf49	161176	genome.wustl.edu	37	14	95921741	95921741	+	Silent	SNP	C	C	T	rs4905324	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	95921741	95921741	C	T	SNP	C14orf49	NM_152592	human	genbank	57_37b	-1	validated	silent	c.1110	p.E370	1.000	NULL	HMMSmart_SM00150,superfamily_Spectrin repeat,HMMPfam_KASH	-		
C21orf99	149992	genome.wustl.edu	37	21	14424652	14424652	+	RNA	SNP	G	G	A	rs3875769	byCluster;by2Hit2Allele;byHapMap	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	14424652	14424652	G	A	SNP	C21orf99	NR_026916	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.042	-	-	-		
CAND1	55832	genome.wustl.edu	37	12	67696173	67696173	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	67696173	67696173	G	A	SNP	CAND1	NM_018448	human	genbank	57_37b	+1	validated	silent	c.1071	p.L357	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_TIP120	-	no_errors	
CCDC88B	283234	genome.wustl.edu	37	11	64109118	64109118	+	Missense_Mutation	SNP	T	T	G	rs647152	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64109118	64109118	T	G	SNP	CCDC88B	NM_032251	human	genbank	57_37b	+1	reviewed	missense	c.579	p.D193E	0.997	NULL	NULL	-		
CCIN	881	genome.wustl.edu	37	9	36169514	36169514	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	36169514	36169514	C	A	SNP	CCIN	NM_005893	human	genbank	57_37b	+1	reviewed	missense	c.15	p.F5L	1.000	superfamily_POZ domain	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1,PatternScan_MULTICOPPER_OXIDASE1	-	no_errors	
CCT6B	10693	genome.wustl.edu	37	17	33288363	33288363	+	Missense_Mutation	SNP	C	C	T	rs9635769	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33288363	33288363	C	T	SNP	CCT6B	NM_006584	human	genbank	57_37b	-1	reviewed	missense	c.50	p.R17Q	1.000	superfamily_GroEL equatorial domain-like	superfamily_GroEL equatorial domain-like,HMMPfam_Cpn60_TCP1,PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_GroEL-intermediate domain like,superfamily_GroEL apical domain-like	-		
CD1B	910	genome.wustl.edu	37	1	158299878	158299878	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158299878	158299878	G	C	SNP	CD1B	NM_001764	human	genbank	57_37b	-1	reviewed	missense	c.371	p.S124C	0.000	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407	-	no_errors	
CD248	57124	genome.wustl.edu	37	11	66083782	66083782	+	Silent	SNP	G	G	A	rs3741368	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66083782	66083782	G	A	SNP	CD248	NM_020404	human	genbank	57_37b	-1	validated	silent	c.717	p.N239	0.960	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,HMMSmart_SM00179,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL	-		
CDH1	999	genome.wustl.edu	37	16	68845685	68845686	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68845685	68845686	-	T	INS	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.931_932	p.D313fs	0.000:0.001	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors	
CELSR3	1951	genome.wustl.edu	37	3	48694417	48694417	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48694417	48694417	T	C	SNP	CELSR3	NM_001407	human	genbank	57_37b	-1	reviewed	silent	c.4113	p.V1371	1.000	superfamily_EGF/Laminin	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
CSRNP1	64651	genome.wustl.edu	37	3	39185716	39185716	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	39185716	39185716	C	T	SNP	CSRNP1	NM_033027	human	genbank	57_37b	-1	reviewed	missense	c.692	p.R231H	1.000	NULL	NULL	-	no_errors	
ECM1	1893	genome.wustl.edu	37	1	150483355	150483355	+	Missense_Mutation	SNP	C	C	T	rs3737240	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150483355	150483355	C	T	SNP	ECM1	NM_004425	human	genbank	57_37b	+1	reviewed	missense	c.389	p.T130M	0.003	HMMPfam_ECM1	HMMPfam_ECM1,superfamily_Serum albumin-like	-		
EFR3B	22979	genome.wustl.edu	37	2	25358396	25358396	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	25358396	25358396	C	T	SNP	EFR3B	NM_014971	human	genbank	57_37b	+1	validated	missense	c.1372	p.R458C	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors	
ETV7	51513	genome.wustl.edu	37	6	36334453	36334453	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	36334453	36334453	A	G	SNP	ETV7	NM_016135	human	genbank	57_37b	-1	provisional	missense	c.995	p.F332S	0.891	NULL	"superfamily_SAM/Pointed domain,HMMSmart_SM00251,HMMPfam_SAM_PNT,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_2"	-	no_errors	
FAM108A1	81926	genome.wustl.edu	37	19	1880950	1880950	+	Missense_Mutation	SNP	T	T	C	rs4807160	byCluster;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1880950	1880950	T	C	SNP	FAM108A1	NM_031213	human	genbank	57_37b	-1	validated	missense	c.430	p.K144E	0.000	NULL	PatternScan_TONB_DEPENDENT_REC_1,superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_2	-		
FLNA	2316	genome.wustl.edu	37	X	153599398	153599398	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153599398	153599398	G	A	SNP	FLNA	NM_001110556	human	genbank	57_37b	-1	reviewed	silent	c.216	p.S72	1.000	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557	-	no_errors	
GLB1L3	112937	genome.wustl.edu	37	11	134179638	134179638	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	134179638	134179638	G	A	SNP	GLB1L3	NM_001080407	human	genbank	57_37b	+1	validated	silent	c.1080	p.S360	0.000	superfamily_(Trans)glycosidases,HMMPfam_Glyco_hydro_35	superfamily_(Trans)glycosidases,HMMPfam_Glyco_hydro_35	-	no_errors	
KLHL21	9903	genome.wustl.edu	37	1	6659504	6659504	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	6659504	6659504	C	T	SNP	KLHL21	NM_014851	human	genbank	57_37b	-1	provisional	missense	c.1030	p.D344N	1.000	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors	
KLHL38	340359	genome.wustl.edu	37	8	124664594	124664594	+	Silent	SNP	C	C	T	rs61730397	byCluster;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124664594	124664594	C	T	SNP	KLHL38	NM_001081675	human	genbank	57_37b	-1	validated	silent	c.573	p.G191	0.779	HMMPfam_BACK	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1	-		
LOC100287264	0	genome.wustl.edu	37	10	120354472	120354472	+	Missense_Mutation	SNP	C	C	T	rs938700	byCluster;byFrequency;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	120354472	120354472	C	T	SNP	LOC100287264	XM_002343034	human	genbank	57_37b	+1	model	missense	c.721	p.R241C	1.000	NULL	NULL	-		
MARVELD2	153562	genome.wustl.edu	37	5	68728474	68728474	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	68728474	68728474	A	G	SNP	MARVELD2	NM_001038603	human	genbank	57_37b	+1	validated	missense	c.1303	p.K435E	0.991	NULL	HMMPfam_MARVEL,HMMPfam_Occludin_ELL	-	no_errors	
MUM1	84939	genome.wustl.edu	37	19	1370675	1370675	+	Silent	SNP	C	C	G	rs12608765	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1370675	1370675	C	G	SNP	MUM1	NM_032853	human	genbank	57_37b	+1	validated	silent	c.1587	p.V529	0.000	NULL	superfamily_Tudor/PWWP/MBT	-		
MYO16	23026	genome.wustl.edu	37	13	109793246	109793246	+	Silent	SNP	G	G	C	rs80260507	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	109793246	109793246	G	C	SNP	MYO16	NM_015011	human	genbank	57_37b	+1	validated	silent	c.4620	p.P1540	0.201	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ	-		
NRK	203447	genome.wustl.edu	37	X	105152945	105152945	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	105152945	105152945	C	T	SNP	NRK	NM_198465	human	genbank	57_37b	+1	validated	nonsense	c.1312	p.R438*	0.001	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_p53-like transcription factors,HMMSmart_SM00036,HMMPfam_CNH	-	no_errors	
ODZ4	26011	genome.wustl.edu	37	11	78775887	78775887	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	78775887	78775887	C	T	SNP	ODZ4	NM_001098816	human	genbank	57_37b	-1	validated	missense	c.389	p.R130H	1.000	HMMPfam_Ten_N	HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF,HMMPfam_EGF_2,superfamily_SSF57196,superfamily_SSF101898,superfamily_TolB_C,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors	
PCDHB19P	84054	genome.wustl.edu	37	5	140621075	140621075	+	RNA	SNP	G	G	A	rs112781549	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140621075	140621075	G	A	SNP	PCDHB19P	NR_001282	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.492	-	-	-		
PCDHB7	56129	genome.wustl.edu	37	5	140553401	140553401	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140553401	140553401	G	A	SNP	PCDHB7	NM_018940	human	genbank	57_37b	+1	reviewed	missense	c.985	p.G329R	0.008	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMPfam_Cadherin_2,superfamily_Cadherin-like,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_SM00112	-	no_errors	
PER1	5187	genome.wustl.edu	37	17	8048010	8048010	+	Missense_Mutation	SNP	C	A	A	rs2289591	byCluster;byFrequency;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8048010	8048010	C	A	SNP	PER1	ENST00000354903	human	ensembl	57_37b	-1	known	missense	c.2472	p.W824C	0.000	NULL	HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC	-		
PHACTR3	116154	genome.wustl.edu	37	20	58342410	58342410	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	58342410	58342410	G	A	SNP	PHACTR3	NM_080672	human	genbank	57_37b	+1	reviewed	silent	c.711	p.P237	0.667	NULL	HMMSmart_SM00707,HMMPfam_RPEL	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A10F-01	TCGA-E2-A10F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178938934	178938934	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178938934	178938934	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.2176	p.E726K	1.000	superfamily_Kinase_like	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PLCL1	5334	genome.wustl.edu	37	2	198949560	198949560	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	198949560	198949560	G	A	SNP	PLCL1	NM_006226	human	genbank	57_37b	+1	validated	missense	c.1025	p.R342Q	1.000	HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
RAP1GAP	5909	genome.wustl.edu	37	1	21936700	21936700	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	21936700	21936700	G	A	SNP	RAP1GAP	NM_001145658	human	genbank	57_37b	-1	validated	silent	c.1104	p.F368	0.993	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP	HMMPfam_GoLoco,HMMSmart_SM00390,superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP	-	no_errors	
REEP3	221035	genome.wustl.edu	37	10	65380602	65380602	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	65380602	65380602	G	T	SNP	REEP3	NM_001001330	human	genbank	57_37b	+1	provisional	silent	c.741	p.V247	1.000	NULL	HMMPfam_TB2_DP1_HVA22	-	no_errors	
RLF	6018	genome.wustl.edu	37	1	40705088	40705088	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	40705088	40705088	C	T	SNP	RLF	NM_012421	human	genbank	57_37b	+1	validated	missense	c.4714	p.R1572C	1.000	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,superfamily_SSF57667	-	no_errors	
SF3B1	23451	genome.wustl.edu	37	2	198266493	198266493	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	198266493	198266493	A	T	SNP	SF3B1	NM_012433	human	genbank	57_37b	-1	reviewed	missense	c.2343	p.D781E	1.000	superfamily_ARM repeat	HMMPfam_SF3b1,superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
SORCS2	57537	genome.wustl.edu	37	4	7735111	7735111	+	Silent	SNP	A	A	G	rs79532786	byCluster;byFrequency;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	7735111	7735111	A	G	SNP	SORCS2	NM_020777	human	genbank	57_37b	+1	reviewed	silent	c.3171	p.G1057	0.005	NULL	superfamily_Oligoxyloglucan reducing end-specific cellobiohydrolase,HMMSmart_SM00602,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD	-		
SPHK2	56848	genome.wustl.edu	37	19	49132634	49132634	+	Silent	SNP	G	G	A	rs3745733	byCluster;byFrequency;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49132634	49132634	G	A	SNP	SPHK2	NM_020126	human	genbank	57_37b	+1	provisional	silent	c.1569	p.L523	0.994	NULL	HMMPfam_DAGK_cat,HMMSmart_SM00046	-		
STAG1	10274	genome.wustl.edu	37	3	136088052	136088052	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	136088052	136088052	G	A	SNP	STAG1	NM_005862	human	genbank	57_37b	-1	reviewed	nonsense	c.2443	p.Q815*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_STAG	-	no_errors	
SUPT6H	6830	genome.wustl.edu	37	17	27014157	27014157	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27014157	27014157	C	T	SNP	SUPT6H	NM_003170	human	genbank	57_37b	+1	validated	missense	c.2752	p.R918W	1.000	NULL	HMMPfam_Tex_N,HMMSmart_SM00732,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00316,HMMPfam_S1,superfamily_SH2 domain,HMMSmart_SM00252	-	no_errors	
TSPO	706	genome.wustl.edu	37	22	43558926	43558926	+	Missense_Mutation	SNP	A	G	G	rs6971	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	43558926	43558926	A	G	SNP	TSPO	NM_000714	human	genbank	57_37b	+1	reviewed	missense	c.439	p.T147A	0.898	HMMPfam_TspO_MBR	HMMPfam_TspO_MBR	-		
WDR81	124997	genome.wustl.edu	37	17	1629969	1629969	+	Silent	SNP	C	C	T	rs80035274	byCluster;byFrequency;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1629969	1629969	C	T	SNP	WDR81	ENST00000409644	human	ensembl	57_37b	+1	known	silent	c.1716	p.H572	1.000	superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like	superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,PatternScan_FBPASE,HMMSmart_SM00320,HMMPfam_WD40	-		
ZFHX3	463	genome.wustl.edu	37	16	72993622	72993622	+	Silent	SNP	C	C	T	rs62053190	byCluster;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	72993622	72993622	C	T	SNP	ZFHX3	NM_006885	human	genbank	57_37b	-1	reviewed	silent	c.423	p.A141	0.092	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-		
ZNF589	51385	genome.wustl.edu	37	3	48282695	48282695	+	Missense_Mutation	SNP	A	A	G	rs9847953	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A10F-01	TCGA-E2-A10F-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48282695	48282695	A	G	SNP	ZNF589	NM_016089	human	genbank	57_37b	+1	validated	missense	c.34	p.T12A	0.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-		
ZNF99	7652	genome.wustl.edu	37	19	22940742	22940742	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A10F-01	TCGA-E2-A10F-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	22940742	22940742	C	A	SNP	ZNF99	NM_001080409	human	genbank	57_37b	-1	provisional	missense	c.1696	p.A566S	0.824	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
