Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABCC8	6833	genome.wustl.edu	37	11	17482153	17482153	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	17482153	17482153	C	T	SNP	ABCC8	NM_000352	human	genbank	57_37b	-1	reviewed	missense	c.893	p.R298H	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors	
ADAMTS1	9510	genome.wustl.edu	37	21	28212818	28212828	+	Frame_Shift_Del	DEL	GAGGTGCCAGG	GAGGTGCCAGG	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	GAGGTGCCAGG	GAGGTGCCAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	28212818	28212828	GAGGTGCCAGG	-	DEL	ADAMTS1	NM_006988	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1442_1432	p.P478fs	0.998:0.980:0.977:0.996:0.984:0.775:1.000:0.999:0.002:1.000:1.000	HMMSmart_ACR	PatternScan_DISINTEGRIN_1,HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMSmart_ACR,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1	(deletion:cds_exon[28212595,28212881])	no_errors	
ANKRD6	22881	genome.wustl.edu	37	6	90338952	90338952	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90338952	90338952	C	G	SNP	ANKRD6	ENST00000339746	human	ensembl	57_37b	+1	known	missense	c.1607	p.S536C	0.693	NULL	HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank	-	no_errors	
ANXA6	309	genome.wustl.edu	37	5	150483215	150483215	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	150483215	150483215	C	G	SNP	ANXA6	NM_001155	human	genbank	57_37b	-1	reviewed	missense	c.1878	p.M626I	1.000	superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_ANX	superfamily_Annexin,HMMPfam_Annexin,PatternScan_ANNEXIN,HMMSmart_ANX	-	no_errors	
ARHGAP23	57636	genome.wustl.edu	37	17	36622726	36622726	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36622726	36622726	C	T	SNP	ARHGAP23	NM_020876	human	genbank	57_37b	+1	provisional	missense	c.520	p.R174C	0.924	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
ATP13A2	23400	genome.wustl.edu	37	1	17316489	17316489	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17316489	17316489	G	A	SNP	ATP13A2	NM_022089	human	genbank	57_37b	-1	reviewed	nonsense	c.2422	p.Q808*	0.864	superfamily_Calcium ATPase transmembrane domain M,superfamily_HAD-like	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_HAD-like,PatternScan_COF_2	-	no_errors	
B3GNT2	10678	genome.wustl.edu	37	2	62450052	62450052	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	62450052	62450052	A	T	SNP	B3GNT2	NM_006577	human	genbank	57_37b	+1	reviewed	missense	c.697	p.T233S	0.986	HMMPfam_Galactosyl_T	HMMPfam_Galactosyl_T	-	no_errors	
BACH2	60468	genome.wustl.edu	37	6	90660211	90660211	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90660211	90660211	G	A	SNP	BACH2	NM_021813	human	genbank	57_37b	-1	validated	silent	c.1614	p.C538	1.000	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_Euk_transcr_DNA,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1	-	no_errors	
BCMO1	53630	genome.wustl.edu	37	16	81303899	81303899	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	81303899	81303899	G	A	SNP	BCMO1	NM_017429	human	genbank	57_37b	+1	reviewed	missense	c.979	p.E327K	1.000	HMMPfam_RPE65	HMMPfam_RPE65	-	no_errors	
BRCA2	675	genome.wustl.edu	37	13	32907409	32907413	+	Frame_Shift_Del	DEL	ATCTT	ATCTT	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	ATCTT	ATCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	32907409	32907413	ATCTT	-	DEL	BRCA2	NM_000059	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1794_1798	p.S599fs	0.177:0.153:0.150:0.138:0.140	NULL	HMMPfam_BRCA2,superfamily_BRCA2_helical,HMMPfam_BRCA-2_helical,superfamily_Nucleic_acid_OB,HMMPfam_BRCA-2_OB1,HMMPfam_Tower,superfamily_SSF81878,HMMPfam_BRCA-2_OB3	(deletion:cds_exon[32906409,32907524])	no_errors	
C11orf41	25758	genome.wustl.edu	37	11	33667477	33667477	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	33667477	33667477	G	A	SNP	C11orf41	NM_012194	human	genbank	57_37b	+1	validated	silent	c.4782	p.S1594	0.000	NULL	NULL	-	no_errors	
C17orf95	124512	genome.wustl.edu	37	17	74729124	74729124	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74729124	74729124	C	G	SNP	C17orf95	NM_001080510	human	genbank	57_37b	+1	predicted	nonsense	c.149	p.S50*	0.999	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_16	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_16	-	no_errors	
C2orf43	60526	genome.wustl.edu	37	2	20886840	20886842	+	In_Frame_Del	DEL	ATA	ATA	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	ATA	ATA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	20886840	20886842	ATA	-	DEL	C2orf43	NM_021925	human	genbank	57_37b	-1	predicted	in_frame_del	c.801_799	p.Y267in_frame_del	0.989:1.000:1.000	HMMPfam_DUF2305,superfamily_SSF53474	HMMPfam_DUF2305,superfamily_SSF53474	(deletion:cds_exon[20886663,20886854])	no_errors	
C2orf89	129293	genome.wustl.edu	37	2	85066288	85066288	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	85066288	85066288	A	T	SNP	C2orf89	NM_001080824	human	genbank	57_37b	-1	predicted	missense	c.829	p.F277I	1.000	NULL	NULL	-	no_errors	
CAMKK1	84254	genome.wustl.edu	37	17	3775903	3775920	+	In_Frame_Del	DEL	AATCGTCGATGAATGGGC	AATCGTCGATGAATGGGC	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	AATCGTCGATGAATGGGC	AATCGTCGATGAATGGGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	3775903	3775920	AATCGTCGATGAATGGGC	-	DEL	CAMKK1	NM_172207	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1183_1166	p.CPFIDD389in_frame_del	0.616:0.429:0.998:1.000:0.983:1.000:1.000:0.220:0.990:1.000:1.000:1.000:0.998:0.506:1.000:1.000:1.000:1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[3775848,3775921])	no_errors	
CAPN1	823	genome.wustl.edu	37	11	64972292	64972292	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64972292	64972292	G	A	SNP	CAPN1	NM_005186	human	genbank	57_37b	+1	reviewed	missense	c.1304	p.G435D	1.000	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2	PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1	-	no_errors	
CAPN5	726	genome.wustl.edu	37	11	76826545	76826545	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	76826545	76826545	A	G	SNP	CAPN5	NM_004055	human	genbank	57_37b	+1	reviewed	silent	c.804	p.L268	1.000	superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2	PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors	
CCDC159	126075	genome.wustl.edu	37	19	11464539	11464539	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11464539	11464539	C	T	SNP	CCDC159	NM_001080503	human	genbank	57_37b	+1	validated	missense	c.761	p.S254L	0.000	NULL	NULL	-	no_errors	
CENPE	1062	genome.wustl.edu	37	4	104066383	104066383	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	104066383	104066383	C	T	SNP	CENPE	NM_001813	human	genbank	57_37b	-1	validated	missense	c.4681	p.D1561N	0.003	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,PatternScan_AA_TRNA_LIGASE_I	-	no_errors	
CEP120	153241	genome.wustl.edu	37	5	122729131	122729131	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	122729131	122729131	A	C	SNP	CEP120	NM_153223	human	genbank	57_37b	-1	reviewed	missense	c.673	p.L225V	0.999	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors	
CIT	11113	genome.wustl.edu	37	12	120295405	120295405	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120295405	120295405	C	G	SNP	CIT	NM_007174	human	genbank	57_37b	-1	validated	missense	c.336	p.Q112H	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C,PatternScan_CPSASE_2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00036,HMMPfam_CNH	-	no_errors	
CPNE5	57699	genome.wustl.edu	37	6	36710076	36710076	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	36710076	36710076	G	C	SNP	CPNE5	NM_020939	human	genbank	57_37b	-1	reviewed	missense	c.1751	p.P584R	0.958	NULL	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine	-	no_errors	
CPT1C	126129	genome.wustl.edu	37	19	50195607	50195607	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50195607	50195607	T	A	SNP	CPT1C	NM_152359	human	genbank	57_37b	+1	provisional	missense	c.98	p.L33H	0.999	NULL	superfamily_CoA-dependent acyltransferases,HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2	-	no_errors	
CRYBG3	131544	genome.wustl.edu	37	3	97614826	97614826	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	97614826	97614826	A	G	SNP	CRYBG3	NM_153605	human	genbank	57_37b	+1	validated	missense	c.1754	p.H585R	1.000	superfamily_gamma-Crystallin-like,HMMPfam_Crystall,HMMSmart_SM00247	superfamily_gamma-Crystallin-like,HMMSmart_SM00247,HMMPfam_Crystall,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins	-	no_errors	
CTTNBP2NL	55917	genome.wustl.edu	37	1	112997128	112997130	+	In_Frame_Del	DEL	GAT	GAT	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	GAT	GAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	112997128	112997130	GAT	-	DEL	CTTNBP2NL	NM_018704	human	genbank	57_37b	+1	validated	in_frame_del	c.388_390	p.D131in_frame_del	1.000:1.000:1.000	HMMPfam_CortBP2	HMMPfam_CortBP2	(deletion:cds_exon[112997071,112997178])	no_errors	
CYP8B1	1582	genome.wustl.edu	37	3	42916934	42916939	+	In_Frame_Del	DEL	TGAGTG	TGAGTG	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	TGAGTG	TGAGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	42916934	42916939	TGAGTG	-	DEL	CYP8B1	NM_004391	human	genbank	57_37b	-1	reviewed	in_frame_del	c.375_370	p.HS124in_frame_del	0.000:0.000:0.000:0.000:0.001:0.001	superfamily_Cytochrome P450	superfamily_Cytochrome P450,HMMPfam_p450	(deletion:cds_exon[42915803,42917308])	no_errors	
CYTSA	23384	genome.wustl.edu	37	22	24765272	24765272	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	24765272	24765272	A	C	SNP	CYTSA	NM_001145468	human	genbank	57_37b	+1	validated	missense	c.3071	p.K1024T	1.000	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	-	no_errors	
DMD	1756	genome.wustl.edu	37	X	32328199	32328199	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	32328199	32328199	C	T	SNP	DMD	NM_004006	human	genbank	57_37b	-1	reviewed	silent	c.6117	p.K2039	1.000	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_t-snare proteins,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Prefoldin	-	no_errors	
DNAH7	56171	genome.wustl.edu	37	2	196749335	196749335	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	196749335	196749335	T	C	SNP	DNAH7	NM_018897	human	genbank	57_37b	-1	validated	missense	c.5737	p.I1913V	0.968	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,PatternScan_EF_HAND_1,HMMPfam_Dynein_heavy,PatternScan_ADH_SHORT	-	no_errors	
DPY19L1	23333	genome.wustl.edu	37	7	35057529	35057529	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	35057529	35057529	T	A	SNP	DPY19L1	NM_015283	human	genbank	57_37b	-1	validated	missense	c.157	p.T53S	0.909	HMMPfam_DUF2211	HMMPfam_DUF2211	-	no_errors	
DSCAML1	57453	genome.wustl.edu	37	11	117308077	117308077	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117308077	117308077	G	A	SNP	DSCAML1	NM_020693	human	genbank	57_37b	-1	provisional	missense	c.4661	p.T1554M	0.999	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors	
DYTN	0	genome.wustl.edu	37	2	207530636	207530636	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	207530636	207530636	A	C	SNP	DYTN	NM_001093730	human	genbank	57_37b	-1	provisional	missense	c.1098	p.D366E	0.000	NULL	HMMPfam_efhand_1,superfamily_SSF47473,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1	-	no_errors	
ELK1	2002	genome.wustl.edu	37	X	47498688	47498688	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47498688	47498688	G	C	SNP	ELK1	NM_001114123	human	genbank	57_37b	-1	reviewed	missense	c.260	p.S87C	1.000	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413"	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors	
ENAM	10117	genome.wustl.edu	37	4	71510070	71510070	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	71510070	71510070	G	C	SNP	ENAM	NM_031889	human	genbank	57_37b	+1	reviewed	missense	c.2927	p.S976T	0.538	NULL	NULL	-	no_errors	
ENSG00000186629	0	genome.wustl.edu	37	19	6981117	6981117	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6981117	6981117	T	A	SNP	ENSG00000186629	ENST00000359590	human	ensembl	57_37b	-1	known	missense	c.515	p.K172M	0.003	NULL	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
FADS2	9415	genome.wustl.edu	37	11	61624993	61624993	+	Missense_Mutation	SNP	G	G	C	rs2526677	byCluster	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	61624993	61624993	G	C	SNP	FADS2	NM_004265	human	genbank	57_37b	+1	reviewed	missense	c.873	p.K291N	0.005	HMMPfam_FA_desaturase	superfamily_Cytochrome b5-like heme/steroid binding domain,HMMPfam_Cyt-b5,HMMPfam_FA_desaturase	-		
FASN	2194	genome.wustl.edu	37	17	80043739	80043739	+	Silent	SNP	A	A	G	rs2229422	byCluster;byFrequency;by1000genomes	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80043739	80043739	A	G	SNP	FASN	NM_004104	human	genbank	57_37b	-1	reviewed	silent	c.3741	p.A1247	0.218	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_12	superfamily_Thiolase-like,HMMPfam_ketoacyl-synt,PatternScan_B_KETOACYL_SYNTHASE,HMMPfam_Ketoacyl-synt_C,superfamily_FabD/lysophospholipase-like,HMMPfam_Acyl_transf_1,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_12,superfamily_GroES-like,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N,HMMPfam_adh_short,superfamily_ACP-like,HMMPfam_PP-binding,PatternScan_PHOSPHOPANTETHEINE,superfamily_alpha/beta-Hydrolases,HMMPfam_Thioesterase	-		
FBRSL1	57666	genome.wustl.edu	37	12	133158042	133158042	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	133158042	133158042	T	A	SNP	FBRSL1	NM_001142641	human	genbank	57_37b	+1	validated	missense	c.1981	p.S661T	0.059	NULL	NULL	-	no_errors	
FHOD3	80206	genome.wustl.edu	37	18	34289076	34289076	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	34289076	34289076	A	G	SNP	FHOD3	NM_025135	human	genbank	57_37b	+1	validated	missense	c.1730	p.E577G	0.019	NULL	superfamily_ARM-type_fold,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	-	no_errors	
GHR	2690	genome.wustl.edu	37	5	42718684	42718684	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	42718684	42718684	G	A	SNP	GHR	NM_000163	human	genbank	57_37b	+1	reviewed	missense	c.1075	p.E359K	0.998	NULL	superfamily_Fibronectin type III,HMMPfam_fn3,PatternScan_HEMATOPO_REC_L_F1	-	no_errors	
GPRIN3	285513	genome.wustl.edu	37	4	90169748	90169758	+	Frame_Shift_Del	DEL	GTTTTGTGGCC	GTTTTGTGGCC	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	GTTTTGTGGCC	GTTTTGTGGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	90169748	90169758	GTTTTGTGGCC	-	DEL	GPRIN3	NM_198281	human	genbank	57_37b	-1	validated	frame_shift_del	c.1514_1504	p.G502fs	0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.002:0.000:0.000:0.033	NULL	NULL	(deletion:cds_exon[90168931,90171261])	no_errors	
GRID1	2894	genome.wustl.edu	37	10	87615835	87615835	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	87615835	87615835	G	C	SNP	GRID1	NM_017551	human	genbank	57_37b	-1	reviewed	missense	c.1064	p.S355C	1.000	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors	
HEATR5B	54497	genome.wustl.edu	37	2	37217922	37217922	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	37217922	37217922	C	G	SNP	HEATR5B	NM_019024	human	genbank	57_37b	-1	validated	missense	c.5566	p.D1856H	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors	
HFE2	148738	genome.wustl.edu	37	1	145415526	145415526	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	145415526	145415526	C	G	SNP	HFE2	NM_213653	human	genbank	57_37b	+1	reviewed	missense	c.345	p.I115M	0.338	HMMPfam_RGM_N	HMMPfam_RGM_N,HMMPfam_RGM_C	-	no_errors	
HIST1H1C	3006	genome.wustl.edu	37	6	26056168	26056182	+	In_Frame_Del	DEL	CGCGGCCGGCTTCTT	CGCGGCCGGCTTCTT	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	CGCGGCCGGCTTCTT	CGCGGCCGGCTTCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26056168	26056182	CGCGGCCGGCTTCTT	-	DEL	HIST1H1C	NM_005319	human	genbank	57_37b	-1	reviewed	in_frame_del	c.489_475	p.KKPAA159in_frame_del	0.059:0.983:0.988:0.718:0.991:0.987:0.032:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998	NULL	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Linker_histone"	(deletion:cds_exon[26056015,26056656])	no_errors	
IFNAR2	3455	genome.wustl.edu	37	21	34635572	34635572	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	34635572	34635572	G	A	SNP	IFNAR2	NM_207585	human	genbank	57_37b	+1	reviewed	missense	c.1315	p.D439N	0.029	NULL	superfamily_Fibronectin type III,HMMPfam_Interfer-bind	-	no_errors	
INADL	10207	genome.wustl.edu	37	1	62293244	62293244	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	62293244	62293244	C	-	DEL	INADL	NM_176877	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1969	p.P657fs	0.000	NULL	HMMPfam_L27_2,HMMSmart_SM00569,superfamily_L27 domain,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	(deletion:cds_exon[62293094,62293255])	no_errors	
ITGA10	8515	genome.wustl.edu	37	1	145530313	145530313	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	145530313	145530313	C	T	SNP	ITGA10	NM_003637	human	genbank	57_37b	+1	reviewed	silent	c.528	p.N176	1.000	superfamily_Integrin alpha N-terminal domain,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains	-	no_errors	
JAK3	3718	genome.wustl.edu	37	19	17954274	17954280	+	Frame_Shift_Del	DEL	AGCCCAA	AGCCCAA	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	AGCCCAA	AGCCCAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17954274	17954280	AGCCCAA	-	DEL	JAK3	NM_000215	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.335_329	p.F110fs	0.998:0.998:0.988:1.000:1.000:0.998:1.000	HMMSmart_SM00295	HMMSmart_SM00295,superfamily_SH2 domain,HMMSmart_SM00252,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_THIOL_PROTEASE_HIS,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	(deletion:cds_exon[17954189,17954300])	no_errors	
KCNH7	90134	genome.wustl.edu	37	2	163236470	163236470	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	163236470	163236470	A	-	DEL	KCNH7	NM_033272	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.3024	p.P1009fs	0.985	NULL	superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	(deletion:cds_exon[163236363,163236531])	no_errors	
KIAA1199	57214	genome.wustl.edu	37	15	81216988	81216988	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	81216988	81216988	C	G	SNP	KIAA1199	NM_018689	human	genbank	57_37b	+1	validated	silent	c.2229	p.V743	0.999	NULL	HMMPfam_G8	-	no_errors	
KREMEN1	83999	genome.wustl.edu	37	22	29534662	29534662	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	29534662	29534662	G	T	SNP	KREMEN1	NM_032045	human	genbank	57_37b	+1	reviewed	missense	c.1015	p.A339S	0.686	NULL	superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1,HMMPfam_WSC,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB	-	no_errors	
LETM1	3954	genome.wustl.edu	37	4	1836571	1836571	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1836571	1836571	C	A	SNP	LETM1	NM_012318	human	genbank	57_37b	-1	reviewed	splice_site	c.876+1	e5+1	1.000	-	-	-	no_errors	
LRRC4B	94030	genome.wustl.edu	37	19	51022417	51022417	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51022417	51022417	G	T	SNP	LRRC4B	NM_001080457	human	genbank	57_37b	-1	provisional	silent	c.553	p.R185	1.000	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors	
MAP2	4133	genome.wustl.edu	37	2	210559282	210559282	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	210559282	210559282	C	T	SNP	MAP2	NM_002374	human	genbank	57_37b	+1	reviewed	silent	c.2388	p.Y796	1.000	HMMPfam_MAP2_projctn	HMMPfam_RII_binding_1,HMMPfam_MAP2_projctn,HMMPfam_Tubulin-binding,PatternScan_TAU_MAP	-	no_errors	
MAS1	4142	genome.wustl.edu	37	6	160328951	160328951	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	160328951	160328951	G	C	SNP	MAS1	NM_002377	human	genbank	57_37b	+1	reviewed	missense	c.964	p.E322Q	1.000	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
MGAT5B	146664	genome.wustl.edu	37	17	74934211	74934211	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74934211	74934211	C	A	SNP	MGAT5B	NM_198955	human	genbank	57_37b	+1	validated	missense	c.1597	p.L533M	1.000	NULL	NULL	-	no_errors	
MYO18B	84700	genome.wustl.edu	37	22	26299726	26299726	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	26299726	26299726	G	T	SNP	MYO18B	NM_032608	human	genbank	57_37b	+1	reviewed	missense	c.5076	p.K1692N	0.903	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ	-	no_errors	
MYPN	84665	genome.wustl.edu	37	10	69955248	69955255	+	Frame_Shift_Del	DEL	GCCCATTC	GCCCATTC	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	GCCCATTC	GCCCATTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	69955248	69955255	GCCCATTC	-	DEL	MYPN	NM_032578	human	genbank	57_37b	+1	validated	frame_shift_del	c.3117_3124	p.P1040fs	0.999:1.000:1.000:0.986:0.985:0.998:0.997:1.000	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,PatternScan_ER_TARGET	(deletion:cds_exon[69955207,69955289])	no_errors	
NAV3	89795	genome.wustl.edu	37	12	78542637	78542637	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	78542637	78542637	C	T	SNP	NAV3	NM_014903	human	genbank	57_37b	+1	validated	missense	c.4723	p.R1575W	1.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	-	no_errors	
NCAM2	4685	genome.wustl.edu	37	21	22664443	22664443	+	Silent	SNP	A	A	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	22664443	22664443	A	T	SNP	NCAM2	NM_004540	human	genbank	57_37b	+1	reviewed	silent	c.501	p.A167	0.977	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors	
NEO1	4756	genome.wustl.edu	37	15	73409162	73409162	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	73409162	73409162	A	C	SNP	NEO1	NM_002499	human	genbank	57_37b	+1	validated	missense	c.412	p.T138P	1.000	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409	PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_Neogenin_C	-	no_errors	
NLRP12	91662	genome.wustl.edu	37	19	54307284	54307284	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54307284	54307284	C	T	SNP	NLRP12	NM_144687	human	genbank	57_37b	-1	reviewed	missense	c.2507	p.G836E	0.001	superfamily_RNI-like,HMMSmart_SM00368	HMMPfam_PAAD_DAPIN,superfamily_DEATH domain,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors	
OLFML2B	25903	genome.wustl.edu	37	1	161953515	161953515	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	161953515	161953515	C	G	SNP	OLFML2B	NM_015441	human	genbank	57_37b	-1	provisional	missense	c.2203	p.A735P	1.000	HMMPfam_OLF,HMMSmart_SM00284	HMMPfam_OLF,HMMSmart_SM00284	-	no_errors	
OR2B6	26212	genome.wustl.edu	37	6	27925573	27925573	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	27925573	27925573	C	G	SNP	OR2B6	NM_012367	human	genbank	57_37b	+1	provisional	silent	c.555	p.L185	0.936	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR2T34	127068	genome.wustl.edu	37	1	248737334	248737334	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248737334	248737334	G	T	SNP	OR2T34	NM_001001821	human	genbank	57_37b	-1	provisional	missense	c.725	p.A242D	0.999	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
OR7D4	125958	genome.wustl.edu	37	19	9324875	9324876	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9324875	9324876	CC	-	DEL	OR7D4	NM_001005191	human	genbank	57_37b	-1	provisional	frame_shift_del	c.639_638	p.G213fs	0.726:0.720	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	(deletion:cds_exon[9324575,9325513])	no_errors	
PAGE1	8712	genome.wustl.edu	37	X	49454099	49454099	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49454099	49454099	C	G	SNP	PAGE1	NM_003785	human	genbank	57_37b	-1	reviewed	missense	c.340	p.G114R	0.006	NULL	HMMPfam_GAGE	-	no_errors	
PATL2	197135	genome.wustl.edu	37	15	44962197	44962197	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	44962197	44962197	G	A	SNP	PATL2	NM_001145112	human	genbank	57_37b	-1	validated	missense	c.746	p.P249L	1.000	NULL	HMMPfam_PAT1	-	no_errors	
PCNT	5116	genome.wustl.edu	37	21	47783719	47783719	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47783719	47783719	G	A	SNP	PCNT	NM_006031	human	genbank	57_37b	+1	reviewed	missense	c.2479	p.D827N	0.003	NULL	HMMPfam_PACT_coil_coil	-	no_errors	
PDGFRL	5157	genome.wustl.edu	37	8	17486008	17486008	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	17486008	17486008	T	C	SNP	PDGFRL	NM_006207	human	genbank	57_37b	+1	reviewed	missense	c.518	p.L173P	1.000	superfamily_Immunoglobulin	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors	
PLCE1	51196	genome.wustl.edu	37	10	96058171	96058171	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	96058171	96058171	T	A	SNP	PLCE1	NM_016341	human	genbank	57_37b	+1	reviewed	missense	c.5203	p.S1735T	0.000	superfamily_PLC-like phosphodiesterases,HMMSmart_SM00149	superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF,superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMSmart_SM00149,HMMPfam_PI-PLC-Y,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_RA,HMMSmart_SM00314	-	no_errors	
PLEKHA8	84725	genome.wustl.edu	37	7	30092481	30092493	+	Frame_Shift_Del	DEL	AGGTAAAAACAAA	AGGTAAAAACAAA	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	AGGTAAAAACAAA	AGGTAAAAACAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	30092481	30092493	AGGTAAAAACAAA	-	DEL	PLEKHA8	NM_032639	human	genbank	57_37b	+1	provisional	frame_shift_del	c.795_796	p.V266fs	1.000:1.000	NULL	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729,superfamily_Glycolipid_transfer_prot,HMMPfam_GLTP	(deletion:cds_exon[30092325,30092482], intron[30092483,30094324])	no_errors	
PPP2R3A	5523	genome.wustl.edu	37	3	135721060	135721060	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	135721060	135721060	C	A	SNP	PPP2R3A	NM_002718	human	genbank	57_37b	+1	reviewed	silent	c.720	p.S240	0.976	NULL	superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors	
PPP2R3A	5523	genome.wustl.edu	37	3	135745705	135745705	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	135745705	135745705	C	T	SNP	PPP2R3A	NM_002718	human	genbank	57_37b	+1	reviewed	missense	c.2027	p.T676I	1.000	NULL	PatternScan_EF_HAND_1,superfamily_EF-hand	-	no_errors	
PREX2	80243	genome.wustl.edu	37	8	69002851	69002851	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	69002851	69002851	G	A	SNP	PREX2	NM_024870	human	genbank	57_37b	+1	validated	silent	c.2151	p.Q717	1.000	superfamily_PDZ domain-like,HMMSmart_SM00228	"superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_DEP,HMMSmart_SM00049,superfamily_PDZ domain-like,HMMSmart_SM00228"	-	no_errors	
PYGM	5837	genome.wustl.edu	37	11	64525907	64525907	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64525907	64525907	A	T	SNP	PYGM	NM_005609	human	genbank	57_37b	-1	reviewed	splice_site	c.424+2	e3+2	0.996	-	-	-	no_errors	
RELN	5649	genome.wustl.edu	37	7	103183270	103183270	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	103183270	103183270	C	G	SNP	RELN	NM_005045	human	genbank	57_37b	-1	reviewed	missense	c.6579	p.K2193N	0.987	NULL	HMMPfam_Reeler,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Sialidase	-	no_errors	
RGAG4	340526	genome.wustl.edu	37	X	71351178	71351178	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	71351178	71351178	G	C	SNP	RGAG4	NM_001024455	human	genbank	57_37b	-1	provisional	missense	c.213	p.F71L	0.999	NULL	HMMPfam_Retrotrans_gag	-	no_errors	
RPL23AP32	56969	genome.wustl.edu	37	2	54756740	54756740	+	RNA	SNP	C	T	T	rs1802889	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	54756740	54756740	C	T	SNP	RPL23AP32	NR_002229	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	1.000	-	-	-		
RYR1	6261	genome.wustl.edu	37	19	38990591	38990591	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38990591	38990591	C	A	SNP	RYR1	NM_000540	human	genbank	57_37b	+1	reviewed	missense	c.7258	p.H2420N	1.000	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors	
SATB1	6304	genome.wustl.edu	37	3	18458465	18458465	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	18458465	18458465	A	T	SNP	SATB1	NM_001131010	human	genbank	57_37b	-1	validated	missense	c.317	p.L106H	1.000	NULL	HMMPfam_CUT,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox	-	no_errors	
SHROOM4	57477	genome.wustl.edu	37	X	50350726	50350727	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	50350726	50350727	-	C	INS	SHROOM4	NM_020717	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.3416_3415	p.E1139fs	0.003:0.001	NULL	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_ASD1,HMMPfam_ASD2	-	no_errors	
SLC24A6	80024	genome.wustl.edu	37	12	113753164	113753164	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	113753164	113753164	C	-	DEL	SLC24A6	NM_024959	human	genbank	57_37b	-1	validated	frame_shift_del	c.1111	p.V371fs	1.000	NULL	HMMPfam_Na_Ca_ex	(deletion:cds_exon[113753140,113753281])	no_errors	
SNORA21	619505	genome.wustl.edu	37	17	37008738	37008738	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37008738	37008738	C	G	SNP	SNORA21	ENST00000499508	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	
SORD	6652	genome.wustl.edu	37	15	45335550	45335550	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	45335550	45335550	A	G	SNP	SORD	NM_003104	human	genbank	57_37b	+1	validated	missense	c.196	p.M66V	1.000	superfamily_GroES-like,HMMPfam_ADH_N	superfamily_GroES-like,HMMPfam_ADH_N,PatternScan_ADH_ZINC,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N	-	no_errors	
SOS1	6654	genome.wustl.edu	37	2	39249723	39249723	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	39249723	39249723	G	A	SNP	SOS1	NM_005633	human	genbank	57_37b	-1	reviewed	missense	c.1846	p.H616Y	1.000	superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N	superfamily_Histone-fold,HMMPfam_Histone,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	-	no_errors	
SULT1C4	27233	genome.wustl.edu	37	2	108998294	108998294	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	108998294	108998294	T	C	SNP	SULT1C4	NM_006588	human	genbank	57_37b	+1	reviewed	silent	c.246	p.T82	0.010	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors	
SUMO1	7341	genome.wustl.edu	37	2	203084812	203084812	+	Nonstop_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	203084812	203084812	A	C	SNP	SUMO1	ENST00000409627	human	ensembl	57_37b	-1	known	nonstop	c.220	p.*74G	0.998	NULL	NULL	-	no_errors	
TMEM89	440955	genome.wustl.edu	37	3	48658374	48658382	+	In_Frame_Del	DEL	GTGCAGGAC	GTGCAGGAC	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	GTGCAGGAC	GTGCAGGAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48658374	48658382	GTGCAGGAC	-	DEL	TMEM89	NM_001008269	human	genbank	57_37b	-1	provisional	in_frame_del	c.381_373	p.VLH125in_frame_del	0.998:1.000:1.000:0.998:1.000:0.999:0.997:0.997:0.979	NULL	NULL	(deletion:cds_exon[48658275,48658460])	no_errors	
TNS1	7145	genome.wustl.edu	37	2	218686502	218686502	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	218686502	218686502	C	T	SNP	TNS1	NM_022648	human	genbank	57_37b	-1	reviewed	missense	c.3221	p.S1074N	1.000	NULL	superfamily_SSF52799,HMMPfam_PTEN_C2,superfamily_C2_CaLB,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PTB	-	no_errors	
TYMP	1890	genome.wustl.edu	37	22	50967953	50967953	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50967953	50967953	C	T	SNP	TYMP	NM_001113755	human	genbank	57_37b	-1	reviewed	silent	c.186	p.V62	0.426	superfamily_Glyco_trans_3,HMMPfam_Glycos_trans_3N	superfamily_Glyco_trans_3,HMMPfam_Glycos_trans_3N,HMMPfam_Glycos_transf_3,PatternScan_THYMID_PHOSPHORYLASE,superfamily_PYNP_C,HMMPfam_PYNP_C	-	no_errors	
UTP20	27340	genome.wustl.edu	37	12	101705565	101705565	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	101705565	101705565	C	A	SNP	UTP20	NM_014503	human	genbank	57_37b	+1	validated	missense	c.2300	p.A767D	0.992	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_DRIM	-	no_errors	
VCX	26609	genome.wustl.edu	37	X	7812007	7812007	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	7812007	7812007	G	C	SNP	VCX	NM_013452	human	genbank	57_37b	+1	reviewed	missense	c.571	p.E191Q	0.429	NULL	NULL	-	no_errors	
VCX3A	51481	genome.wustl.edu	37	X	6451836	6451836	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	6451836	6451836	C	G	SNP	VCX3A	NM_016379	human	genbank	57_37b	-1	reviewed	missense	c.511	p.E171Q	0.129	NULL	NULL	-	no_errors	
WDR49	151790	genome.wustl.edu	37	3	167320043	167320043	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	167320043	167320043	T	G	SNP	WDR49	NM_178824	human	genbank	57_37b	-1	provisional	missense	c.124	p.K42Q	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
ZFYVE16	9765	genome.wustl.edu	37	5	79743961	79743961	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	79743961	79743961	G	-	DEL	ZFYVE16	NM_001105251	human	genbank	57_37b	+1	validated	frame_shift_del	c.2841	p.E948fs	0.792	NULL	HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	(deletion:cds_exon[79743845,79744223])	no_errors	
ZNF608	57507	genome.wustl.edu	37	5	124080558	124080569	+	In_Frame_Del	DEL	TCCAAATCAGCG	TCCAAATCAGCG	-	novel	unknown	TCGA-E2-A14W-01	TCGA-E2-A14W-01	TCCAAATCAGCG	TCCAAATCAGCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	124080558	124080569	TCCAAATCAGCG	-	DEL	ZNF608	NM_020747	human	genbank	57_37b	-1	validated	in_frame_del	c.125_114	p.DADL38in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.988:1.000:1.000:1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[124079777,124080682])	no_errors	
