Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ADAMTS2	9509	genome.wustl.edu	37	5	178608136	178608136	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	178608136	178608136	G	A	SNP	ADAMTS2	NM_014244	human	genbank	57_37b	-1	reviewed	silent	c.912	p.D304	0.750	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors	
ANK1	286	genome.wustl.edu	37	8	41529994	41529994	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41529994	41529994	G	A	SNP	ANK1	NM_001142446	human	genbank	57_37b	-1	reviewed	silent	c.5097	p.D1699	0.814	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,HMMSmart_ZU5,HMMSmart_DEATH,superfamily_DEATH_like,HMMPfam_Death	-	no_errors	
AQR	9716	genome.wustl.edu	37	15	35168164	35168164	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	35168164	35168164	A	G	SNP	AQR	NM_014691	human	genbank	57_37b	-1	validated	missense	c.3209	p.I1070T	1.000	superfamily_SSF52540	superfamily_SSF52540	-	no_errors	
ARHGAP5	394	genome.wustl.edu	37	14	32562091	32562091	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	32562091	32562091	G	A	SNP	ARHGAP5	NM_001030055	human	genbank	57_37b	+1	reviewed	missense	c.2216	p.R739H	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00441,HMMPfam_FF,superfamily_FF domain,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors	
BCAR3	8412	genome.wustl.edu	37	1	94032999	94032999	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	94032999	94032999	C	T	SNP	BCAR3	NM_003567	human	genbank	57_37b	-1	reviewed	silent	c.2136	p.P712	0.262	superfamily_Ras GEF,HMMSmart_SM00147	superfamily_Ras GEF,HMMSmart_SM00252,HMMPfam_SH2,HMMSmart_SM00147	-	no_errors	
CDHR4	0	genome.wustl.edu	37	3	49832471	49832471	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49832471	49832471	G	A	SNP	CDHR4	NM_001007540	human	genbank	57_37b	-1	provisional	missense	c.1094	p.P365L	0.813	superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors	
CTNND2	1501	genome.wustl.edu	37	5	11346626	11346626	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	11346626	11346626	C	G	SNP	CTNND2	NM_001332	human	genbank	57_37b	-1	validated	missense	c.1486	p.A496P	0.994	NULL	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors	
DNAH17	8632	genome.wustl.edu	37	17	76471537	76471537	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	76471537	76471537	G	A	SNP	DNAH17	ENST00000389840	human	ensembl	57_37b	-1	known	silent	c.8292	p.D2764	0.572	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy	-	no_errors	
G2E3	55632	genome.wustl.edu	37	14	31071093	31071093	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	31071093	31071093	C	T	SNP	G2E3	NM_017769	human	genbank	57_37b	+1	validated	silent	c.870	p.Y290	1.000	NULL	HMMSmart_PHD,PatternScan_ZF_PHD_1,HMMSmart_RING,superfamily_HECT,HMMPfam_HECT	-	no_errors	
GAP43	2596	genome.wustl.edu	37	3	115382754	115382754	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	115382754	115382754	G	T	SNP	GAP43	NM_001130064	human	genbank	57_37b	+1	reviewed	missense	c.129	p.W43C	0.000	HMMPfam_Neuromodulin_N	HMMPfam_Neuromodulin_N,HMMSmart_IQ,HMMPfam_IQ,PatternScan_NEUROMODULIN_2,HMMPfam_Neuromodulin	-	no_errors	
HECW1	23072	genome.wustl.edu	37	7	43591895	43591895	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	43591895	43591895	C	A	SNP	HECW1	NM_015052	human	genbank	57_37b	+1	validated	silent	c.4470	p.I1490	0.306	superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors	
HSPBAP1	79663	genome.wustl.edu	37	3	122459884	122459884	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122459884	122459884	G	A	SNP	HSPBAP1	NM_024610	human	genbank	57_37b	-1	provisional	missense	c.902	p.P301L	0.677	superfamily_Clavaminate synthase-like	superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC	-	no_errors	
IFRD2	7866	genome.wustl.edu	37	3	50329680	50329680	+	Missense_Mutation	SNP	G	G	T	rs113502427	byCluster;by1000genomes	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50329680	50329680	G	T	SNP	IFRD2	NM_006764	human	genbank	57_37b	-1	validated	missense	c.218	p.T73K	0.954	NULL	HMMPfam_IFRD,superfamily_ARM repeat,HMMPfam_IFRD_C	-		
MYH15	22989	genome.wustl.edu	37	3	108129643	108129643	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	108129643	108129643	G	T	SNP	MYH15	NM_014981	human	genbank	57_37b	-1	validated	missense	c.4342	p.R1448S	0.074	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1,superfamily_Spectrin repeat	-	no_errors	
NAP1L2	4674	genome.wustl.edu	37	X	72433234	72433234	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	72433234	72433234	A	G	SNP	NAP1L2	NM_021963	human	genbank	57_37b	-1	reviewed	silent	c.1095	p.F365	0.956	HMMPfam_NAP	HMMPfam_NAP	-	no_errors	
NSMAF	8439	genome.wustl.edu	37	8	59571856	59571856	+	Missense_Mutation	SNP	A	A	C	rs59606339	byCluster;by1000genomes	TCGA-E2-A14X-01	TCGA-E2-A14X-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	59571856	59571856	A	C	SNP	NSMAF	NM_001144772	human	genbank	57_37b	-1	reviewed	missense	c.50	p.I17S	0.000	NULL	HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-		
OR6S1	341799	genome.wustl.edu	37	14	21109743	21109743	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21109743	21109743	G	C	SNP	OR6S1	NM_001001968	human	genbank	57_37b	-1	provisional	silent	c.108	p.V36	0.953	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PLXNA3	55558	genome.wustl.edu	37	X	153699919	153699919	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153699919	153699919	G	A	SNP	PLXNA3	NM_017514	human	genbank	57_37b	+1	validated	missense	c.5458	p.D1820N	1.000	HMMPfam_Plexin_cytopl,superfamily_Rho_GAP	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_Rho_GAP	-	no_errors	
RDBP	7936	genome.wustl.edu	37	6	31922367	31922367	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31922367	31922367	C	T	SNP	RDBP	NM_002904	human	genbank	57_37b	-1	reviewed	missense	c.707	p.R236Q	1.000	superfamily_RNA-binding domain RBD	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
TARS	6897	genome.wustl.edu	37	5	33453503	33453503	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	33453503	33453503	G	A	SNP	TARS	NM_152295	human	genbank	57_37b	+1	reviewed	missense	c.439	p.E147K	1.000	superfamily_ThrRS/AlaRS common domain	HMMPfam_TGS,superfamily_TGS-like,superfamily_ThrRS/AlaRS common domain,HMMPfam_tRNA_SAD,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b,superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon	-	no_errors	
TGFB1	7040	genome.wustl.edu	37	19	41858878	41858878	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41858878	41858878	G	T	SNP	TGFB1	NM_000660	human	genbank	57_37b	-1	reviewed	silent	c.72	p.G24	0.439	NULL	HMMPfam_TGFb_propeptide,superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1	-	no_errors	
TLR3	7098	genome.wustl.edu	37	4	187003591	187003591	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	187003591	187003591	C	T	SNP	TLR3	NM_003265	human	genbank	57_37b	+1	reviewed	missense	c.751	p.R251W	0.006	superfamily_SSF52058	HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR	-	no_errors	
TP53	7157	genome.wustl.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578212	7578212	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	nonsense	c.637	p.R213*	0.893	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors	
TTN	7273	genome.wustl.edu	37	2	179480082	179480082	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179480082	179480082	C	T	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.40886	p.R13629H	1.000	HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors	
TUBA3C	7278	genome.wustl.edu	37	13	19748195	19748195	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	19748195	19748195	G	A	SNP	TUBA3C	NM_006001	human	genbank	57_37b	-1	reviewed	silent	c.1161	p.A387	1.000	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors	
USP31	57478	genome.wustl.edu	37	16	23116870	23116870	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	23116870	23116870	T	C	SNP	USP31	NM_020718	human	genbank	57_37b	-1	validated	silent	c.981	p.Q327	0.998	superfamily_Cysteine proteinases,HMMPfam_UCH	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors	
WFIKKN1	117166	genome.wustl.edu	37	16	682837	682837	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	682837	682837	G	A	SNP	WFIKKN1	NM_053284	human	genbank	57_37b	+1	reviewed	missense	c.427	p.A143T	0.996	superfamily_SSF100895,HMMPfam_Kazal_2,HMMSmart_KAZAL	PatternScan_KAZAL,superfamily_WAP,HMMPfam_WAP,HMMSmart_WAP,PatternScan_4_DISULFIDE_CORE,superfamily_SSF100895,HMMPfam_Kazal_2,HMMSmart_KAZAL,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,superfamily_Prot_inh_Kunz-m,HMMSmart_KU,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1,superfamily_TIMP_like	-	no_errors	
ZFP106	64397	genome.wustl.edu	37	15	42740787	42740787	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42740787	42740787	G	C	SNP	ZFP106	NM_022473	human	genbank	57_37b	-1	provisional	missense	c.2549	p.S850W	0.472	NULL	PatternScan_WD_REPEATS_1,HMMSmart_ZnF_C2H2,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,HMMSmart_PQQ,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF91	7644	genome.wustl.edu	37	19	23542476	23542476	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14X-01	TCGA-E2-A14X-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	23542476	23542476	C	G	SNP	ZNF91	NM_003430	human	genbank	57_37b	-1	validated	missense	c.3305	p.G1102A	1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355	-	no_errors	
