Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
ABTB2	25841	genome.wustl.edu	37	11	34194815	34194815	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	34194815	34194815	G	A	SNP	ABTB2	NM_145804	human	genbank	57_37b	-1	provisional	silent	c.726	p.R242	0.012	NULL	superfamily_Histone-fold,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB	-	no_errors	
ADCY1	107	genome.wustl.edu	37	7	45753497	45753497	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	45753497	45753497	C	T	SNP	ADCY1	NM_021116	human	genbank	57_37b	+1	reviewed	missense	c.3263	p.P1088L	0.982	NULL	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors	
BRIX1	55299	genome.wustl.edu	37	5	34925580	34925580	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	34925580	34925580	G	T	SNP	BRIX1	NM_018321	human	genbank	57_37b	+1	validated	missense	c.1042	p.D348Y	0.706	NULL	HMMPfam_Brix	-	no_errors	
C3orf38	285237	genome.wustl.edu	37	3	88205221	88205223	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	88205221	88205223	AGA	-	DEL	C3orf38	ENST00000318887	human	ensembl	57_37b	+1	known	in_frame_del	c.426_428	p.E144in_frame_del	0.918:0.917:0.998	superfamily_NTF2-like	PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_NTF2-like,PatternScan_THIOL_PROTEASE_HIS	(deletion:cds_exon[88205171,88205785])	no_errors	
C3orf77	375337	genome.wustl.edu	37	3	44284584	44284584	+	Missense_Mutation	SNP	G	G	A	rs9284879	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A15P-01	TCGA-E2-A15P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	44284584	44284584	G	A	SNP	C3orf77	NM_001145030	human	genbank	57_37b	+1	validated	missense	c.586	p.V196I	0.006	NULL	HMMPfam_PAZ	-		
C9orf102	56959	genome.wustl.edu	37	9	98638288	98638288	+	Missense_Mutation	SNP	A	A	G	rs690528	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A15P-01	TCGA-E2-A15P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	98638288	98638288	A	G	SNP	C9orf102	NM_001010895	human	genbank	57_37b	+1	validated	missense	c.1	p.M1V	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-		
COL4A3BP	10087	genome.wustl.edu	37	5	74706907	74706909	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	74706907	74706909	TTC	-	DEL	COL4A3BP	NM_001130105	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1243_1241	p.R414in_frame_del	0.011:0.227:1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_SSF55961,HMMPfam_START,HMMSmart_START	(deletion:cds_exon[74706836,74706928])	no_errors	
CRYZL1	9946	genome.wustl.edu	37	21	34968081	34968081	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	34968081	34968081	T	C	SNP	CRYZL1	NM_145858	human	genbank	57_37b	-1	reviewed	missense	c.860	p.D287G	1.000	superfamily_NAD(P)-binding Rossmann-fold domains	superfamily_GroES-like,HMMPfam_ADH_N,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_ADH_zinc_N	-	no_errors	
CYP3A4	1576	genome.wustl.edu	37	7	99358590	99358592	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99358590	99358592	TTC	-	DEL	CYP3A4	NM_017460	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1268_1266	p.K422in_frame_del	1.000:1.000:0.994	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	(deletion:cds_exon[99358442,99358604])	no_errors	
CYP3A7	1551	genome.wustl.edu	37	7	99306769	99306769	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99306769	99306769	A	G	SNP	CYP3A7	NM_000765	human	genbank	57_37b	-1	reviewed	missense	c.1142	p.V381A	1.000	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors	
DBX1	120237	genome.wustl.edu	37	11	20177994	20177994	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	20177994	20177994	G	A	SNP	DBX1	NM_001029865	human	genbank	57_37b	-1	provisional	silent	c.915	p.S305	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_errors	
DLG1	1739	genome.wustl.edu	37	3	196846394	196846396	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	196846394	196846396	AGA	-	DEL	DLG1	NM_004087	human	genbank	57_37b	-1	validated	in_frame_del	c.1272_1270	p.S424in_frame_del	1.000:1.000:1.000	HMMPfam_PDZ_assoc	HMMPfam_L27_1,superfamily_L27 domain,HMMSmart_SM00569,HMMPfam_MAGUK_N_PEST,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_PDZ_assoc,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C	(deletion:cds_exon[196846281,196846401])	no_errors	
DNAJA4	55466	genome.wustl.edu	37	15	78572663	78572666	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	AAGT	AAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78572663	78572666	AAGT	-	DEL	DNAJA4	NM_018602	human	genbank	57_37b	+1	validated	frame_shift_del	c.1142_1145	p.K381fs	0.974:0.121:0.117:0.114	NULL	superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ,PatternScan_DNAJ_1,superfamily_HSP40_DnaJ_pep,HMMPfam_DnaJ_CXXCXGXG,superfamily_HSP_DnaJ_cys-rich,HMMPfam_DnaJ_C	(deletion:cds_exon[78572587,78572802])	no_errors	
ENSG00000247772	0	genome.wustl.edu	37	11	47378902	47378903	+	RNA	DEL	CA	CA	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47378902	47378903	CA	-	DEL	ENSG00000247772	ENST00000499849	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.758:0.754	-	-	(deletion:rna[47376886,47379300])	no_errors	
ENTPD2	954	genome.wustl.edu	37	9	139943179	139943179	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139943179	139943179	G	A	SNP	ENTPD2	NM_203468	human	genbank	57_37b	-1	reviewed	missense	c.1418	p.S473F	0.001	NULL	HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE	-	no_errors	
EPM2AIP1	9852	genome.wustl.edu	37	3	37033943	37033945	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	37033943	37033945	AGA	-	DEL	EPM2AIP1	NM_014805	human	genbank	57_37b	-1	reviewed	in_frame_del	c.626_624	p.L209in_frame_del	1.000:0.898:0.245	NULL	NULL	(deletion:cds_exon[37032745,37034568])	no_errors	
KBTBD8	84541	genome.wustl.edu	37	3	67058478	67058480	+	In_Frame_Del	DEL	ATC	ATC	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	ATC	ATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	67058478	67058480	ATC	-	DEL	KBTBD8	NM_032505	human	genbank	57_37b	+1	validated	in_frame_del	c.1397_1399	p.H467in_frame_del	1.000:1.000:1.000	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	(deletion:cds_exon[67058346,67058809])	no_errors	
LDLRAD2	401944	genome.wustl.edu	37	1	22141030	22141030	+	Silent	SNP	C	C	T	rs75506362	by1000genomes	TCGA-E2-A15P-01	TCGA-E2-A15P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	22141030	22141030	C	T	SNP	LDLRAD2	NM_001013693	human	genbank	57_37b	+1	validated	silent	c.225	p.D75	1.000	superfamily_CUB	superfamily_CUB,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa	-		
LEPRE1	64175	genome.wustl.edu	37	1	43212402	43212403	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	43212402	43212403	GA	-	DEL	LEPRE1	NM_022356	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.2177_2176	p.S726fs	0.001:0.000	NULL	superfamily_TPR-like,HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy	(deletion:cds_exon[43212368,43212523])	no_errors	
LOC100129571	0	genome.wustl.edu	37	5	65892448	65892448	+	Missense_Mutation	SNP	C	C	G	rs4502771	byCluster;by2Hit2Allele;by1000genomes	TCGA-E2-A15P-01	TCGA-E2-A15P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	65892448	65892448	C	G	SNP	LOC100129571	XM_001715275	human	genbank	57_37b	-1	model	missense	c.901	p.G301R	0.002	NULL	NULL	-		
LPXN	9404	genome.wustl.edu	37	11	58345493	58345493	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	58345493	58345493	G	A	SNP	LPXN	NM_001143995	human	genbank	57_37b	-1	reviewed	silent	c.27	p.S9	0.000	NULL	superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors	
MYO3B	140469	genome.wustl.edu	37	2	171240240	171240240	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	171240240	171240240	G	A	SNP	MYO3B	NM_138995	human	genbank	57_37b	+1	validated	silent	c.1206	p.G402	0.982	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors	
NUDT18	79873	genome.wustl.edu	37	8	21965179	21965182	+	Frame_Shift_Del	DEL	CTGT	CTGT	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	CTGT	CTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	21965179	21965182	CTGT	-	DEL	NUDT18	NM_024815	human	genbank	57_37b	-1	validated	frame_shift_del	c.604_601	p.T201fs	0.328:0.160:0.808:0.980	NULL	superfamily_Nudix,HMMPfam_NUDIX,PatternScan_NUDIX	(deletion:cds_exon[21964811,21965406])	no_errors	
P2RX7	5027	genome.wustl.edu	37	12	121622563	121622563	+	Silent	SNP	G	G	A	rs1621388	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A15P-01	TCGA-E2-A15P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	121622563	121622563	G	A	SNP	P2RX7	NM_002562	human	genbank	57_37b	+1	reviewed	silent	c.1746	p.P582	0.888	NULL	HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR	-		
PASD1	139135	genome.wustl.edu	37	X	150832809	150832809	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	150832809	150832809	G	A	SNP	PASD1	NM_173493	human	genbank	57_37b	+1	validated	missense	c.1060	p.A354T	0.000	NULL	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors	
PHLDB3	653583	genome.wustl.edu	37	19	44008096	44008098	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	44008096	44008098	CTT	-	DEL	PHLDB3	NM_198850	human	genbank	57_37b	-1	validated	in_frame_del	c.175_173	p.E58in_frame_del	1.000:0.998:1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	(deletion:cds_exon[44008058,44008270])	no_errors	
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1624	p.E542K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PRDM2	7799	genome.wustl.edu	37	1	14107659	14107661	+	In_Frame_Del	DEL	TGT	TGT	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	TGT	TGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	14107659	14107661	TGT	-	DEL	PRDM2	NM_012231	human	genbank	57_37b	+1	reviewed	in_frame_del	c.3369_3371	p.V1126in_frame_del	0.597:0.363:0.092	NULL	superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[14104913,14109326])	no_errors	
RIPK4	54101	genome.wustl.edu	37	21	43187137	43187137	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	43187137	43187137	A	T	SNP	RIPK4	NM_020639	human	genbank	57_37b	-1	reviewed	missense	c.65	p.F22Y	1.000	superfamily_Kinase_like,HMMPfam_Pkinase	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_ANK,PatternScan_ASP_PROTEASE,HMMSmart_ANK,HMMPfam_Ank	-	no_errors	
RTN4	57142	genome.wustl.edu	37	2	55214698	55214699	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	55214698	55214699	CA	-	DEL	RTN4	NM_020532	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.3150_3149	p.V1050fs	1.000:1.000	HMMPfam_Reticulon	HMMPfam_Reticulon	(deletion:cds_exon[55214627,55214834])	no_errors	
SEMA4F	10505	genome.wustl.edu	37	2	74900877	74900879	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74900877	74900879	CTT	-	DEL	SEMA4F	NM_004263	human	genbank	57_37b	+1	provisional	in_frame_del	c.744_746	p.F251in_frame_del	1.000:1.000:1.000	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	(deletion:cds_exon[74900804,74900955])	no_errors	
SLC16A8	23539	genome.wustl.edu	37	22	38477275	38477275	+	Missense_Mutation	SNP	G	G	A	rs75640043	byCluster;byFrequency;by1000genomes	TCGA-E2-A15P-01	TCGA-E2-A15P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38477275	38477275	G	A	SNP	SLC16A8	NM_013356	human	genbank	57_37b	-1	validated	missense	c.770	p.A257V	0.940	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-		
SLC35E3	55508	genome.wustl.edu	37	12	69140514	69140516	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	69140514	69140516	CTT	-	DEL	SLC35E3	NM_018656	human	genbank	57_37b	+1	validated	in_frame_del	c.357_359	p.F120in_frame_del	0.697:0.552:0.908	NULL	HMMPfam_TPT,superfamily_Multidrug resistance efflux transporter EmrE	(deletion:cds_exon[69140158,69140559])	no_errors	
SP3	6670	genome.wustl.edu	37	2	174819671	174819674	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	TGTT	TGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	174819671	174819674	TGTT	-	DEL	SP3	NM_003111	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1569_1566	p.T523fs	1.000:1.000:1.000:1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	(deletion:cds_exon[174819601,174820960])	no_errors	
SQLE	6713	genome.wustl.edu	37	8	126030304	126030306	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	126030304	126030306	TTC	-	DEL	SQLE	NM_003129	human	genbank	57_37b	+1	reviewed	in_frame_del	c.1208_1210	p.L406in_frame_del	1.000:0.994:1.000	superfamily_SSF51905,HMMPfam_SE	superfamily_SSF51905,HMMPfam_DAO,HMMPfam_SE	(deletion:cds_exon[126030301,126030443])	no_errors	
SUZ12	23512	genome.wustl.edu	37	17	30267462	30267465	+	Frame_Shift_Del	DEL	CTTA	CTTA	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	CTTA	CTTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	30267462	30267465	CTTA	-	DEL	SUZ12	NM_015355	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.343_346	p.Y117fs	1.000:1.000:1.000:1.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_VEFS-Box	(deletion:cds_exon[30267441,30267505])	no_errors	
TAS2R3	50831	genome.wustl.edu	37	7	141464672	141464674	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141464672	141464674	CTT	-	DEL	TAS2R3	NM_016943	human	genbank	57_37b	+1	reviewed	in_frame_del	c.714_716	p.F241in_frame_del	0.988:0.967:0.031	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	(deletion:cds_exon[141463959,141464909])	no_errors	
TBL1XR1	79718	genome.wustl.edu	37	3	176756187	176756189	+	In_Frame_Del	DEL	TGT	TGT	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	TGT	TGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	176756187	176756189	TGT	-	DEL	TBL1XR1	NM_024665	human	genbank	57_37b	-1	reviewed	in_frame_del	c.961_959	p.N320in_frame_del	1.000:1.000:1.000	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	HMMSmart_LisH,HMMPfam_LisH,HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	(deletion:cds_exon[176756101,176756222])	no_errors	
TIA1	7072	genome.wustl.edu	37	2	70475537	70475538	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	70475537	70475538	AG	-	DEL	TIA1	NM_022173	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.26_25	p.L9fs	1.000:1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMSmart_SM00361,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMSmart_SM00361,HMMPfam_RRM_1	(deletion:cds_exon[70475537,70475562])	no_errors	
TMEM87A	25963	genome.wustl.edu	37	15	42529656	42529656	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42529656	42529656	T	C	SNP	TMEM87A	NM_015497	human	genbank	57_37b	-1	validated	missense	c.842	p.Q281R	1.000	HMMPfam_Lung_7-TM_R	HMMPfam_Lung_7-TM_R	-	no_errors	
TTC7B	145567	genome.wustl.edu	37	14	91007788	91007788	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	91007788	91007788	T	G	SNP	TTC7B	NM_001010854	human	genbank	57_37b	-1	provisional	missense	c.2456	p.E819A	1.000	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2	-	no_errors	
TTC7B	145567	genome.wustl.edu	37	14	91007891	91007891	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	91007891	91007891	T	G	SNP	TTC7B	NM_001010854	human	genbank	57_37b	-1	provisional	missense	c.2353	p.K785Q	1.000	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	HMMPfam_TPR_1,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors	
WDR47	22911	genome.wustl.edu	37	1	109525305	109525305	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	109525305	109525305	C	T	SNP	WDR47	NM_001142550	human	genbank	57_37b	-1	validated	missense	c.2216	p.G739E	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320	HMMSmart_SM00667,HMMSmart_SM00668,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors	
ZNF2	7549	genome.wustl.edu	37	2	95847302	95847302	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	95847302	95847302	G	A	SNP	ZNF2	ENST00000453539	human	ensembl	57_37b	+1	known	silent	c.768	p.S256	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
ZNF300	91975	genome.wustl.edu	37	5	150275009	150275009	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	150275009	150275009	T	A	SNP	ZNF300	NM_052860	human	genbank	57_37b	-1	reviewed	missense	c.1792	p.I598F	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355	-	no_errors	
ZNF518B	85460	genome.wustl.edu	37	4	10445214	10445214	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15P-01	TCGA-E2-A15P-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	10445214	10445214	A	C	SNP	ZNF518B	NM_053042	human	genbank	57_37b	-1	validated	missense	c.2739	p.D913E	0.113	NULL	HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors	
