Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU	
A2BP1	54715	genome.wustl.edu	37	16	7102099	7102099	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	7102099	7102099	G	T	SNP	A2BP1	NM_001142334	human	genbank	57_37b	+1	reviewed	missense	c.27	p.R9S	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors	
ALDH1A3	220	genome.wustl.edu	37	15	101447414	101447414	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	101447414	101447414	C	T	SNP	ALDH1A3	NM_000693	human	genbank	57_37b	+1	reviewed	missense	c.1322	p.A441V	1.000	superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh	superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors	
ARHGAP11A	9824	genome.wustl.edu	37	15	32929655	32929655	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	32929655	32929655	C	A	SNP	ARHGAP11A	NM_014783	human	genbank	57_37b	+1	validated	nonsense	c.2681	p.S894*	0.000	NULL	superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors	
ARHGAP11A	9824	genome.wustl.edu	37	15	32929655	32929655	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	32929655	32929655	C	A	SNP	ARHGAP11A	NM_014783	human	genbank	57_37b	+1	validated	nonsense	c.2681	p.S894*	0.000	NULL	superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors	
ATXN3	4287	genome.wustl.edu	37	14	92537379	92537379	+	Silent	SNP	T	T	C	rs12896583	byCluster;byFrequency;by1000genomes	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	92537379	92537379	T	C	SNP	ATXN3	NM_004993	human	genbank	57_37b	-1	reviewed	silent	c.891	p.Q297	0.562	NULL	HMMPfam_Josephin,HMMPfam_UIM,HMMSmart_SM00726	-		
BAHCC1	57597	genome.wustl.edu	37	17	79418770	79418770	+	Missense_Mutation	SNP	C	C	T	rs61746096	byCluster;byFrequency;by1000genomes	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79418770	79418770	C	T	SNP	BAHCC1	NM_001080519	human	genbank	57_37b	+1	inferred	missense	c.3886	p.R1296C	0.212	NULL	PatternScan_ZINC_FINGER_C2H2_1	-		
BCOR	54880	genome.wustl.edu	37	X	39922954	39922954	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	39922954	39922954	T	C	SNP	BCOR	NM_001123385	human	genbank	57_37b	-1	reviewed	missense	c.3754	p.I1252V	0.915	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors	
BSN	8927	genome.wustl.edu	37	3	49698237	49698237	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49698237	49698237	A	T	SNP	BSN	NM_003458	human	genbank	57_37b	+1	reviewed	nonsense	c.8959	p.K2987*	1.000	NULL	HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF	-	no_errors	
BSN	8927	genome.wustl.edu	37	3	49698237	49698237	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49698237	49698237	A	T	SNP	BSN	NM_003458	human	genbank	57_37b	+1	reviewed	nonsense	c.8959	p.K2987*	1.000	NULL	HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF	-	no_errors	
C12orf44	60673	genome.wustl.edu	37	12	52467675	52467697	+	In_Frame_Del	DEL	GGGGAGTTCAAGGTAAGGGTGTC	GGGGAGTTCAAGGTAAGGGTGTC	-	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	GGGGAGTTCAAGGTAAGGGTGTC	GGGGAGTTCAAGGTAAGGGTGTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52467675	52467697	GGGGAGTTCAAGGTAAGGGTGTC	-	DEL	C12orf44	NM_001098673	human	genbank	57_37b	+1	validated	in_frame_del	c.241_252	p.GEFK81in_frame_del	0.839:0.976:0.977:0.998:0.997:0.923:0.988:0.992:0.987:0.999:1.000:1.000	HMMPfam_DUF1649	HMMPfam_DUF1649	(deletion:cds_exon[52467435,52467686], intron[52467687,52470569])	no_errors	
C1orf129	80133	genome.wustl.edu	37	1	170952657	170952657	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	170952657	170952657	C	T	SNP	C1orf129	NM_025063	human	genbank	57_37b	+1	validated	silent	c.711	p.D237	0.000	NULL	NULL	-	no_errors	
C1orf96	126731	genome.wustl.edu	37	1	229461134	229461134	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	229461134	229461134	T	G	SNP	C1orf96	NM_145257	human	genbank	57_37b	-1	validated	missense	c.661	p.K221Q	1.000	NULL	NULL	-	no_errors	
C9orf61	9413	genome.wustl.edu	37	9	72002911	72002912	+	In_Frame_Ins	INS	-	-	GTTATA	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	72002911	72002912	-	GTTATA	INS	C9orf61	ENST00000377216	human	ensembl	57_37b	+1	known	in_frame_ins	c.55_56	p.20in_frame_insYS	0.000:0.000	NULL	NULL	-	no_errors	
DDAH1	23576	genome.wustl.edu	37	1	85790543	85790543	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	85790543	85790543	G	T	SNP	DDAH1	NM_012137	human	genbank	57_37b	-1	reviewed	missense	c.621	p.H207Q	0.999	HMMPfam_Amidinotransf,superfamily_Pentein	HMMPfam_Amidinotransf,superfamily_Pentein	-	no_errors	
ENSG00000099251	0	genome.wustl.edu	37	10	38652504	38652504	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	38652504	38652504	T	C	SNP	ENSG00000099251	ENST00000356314	human	ensembl	57_37b	+1	known	missense	c.413	p.V138A	1.000	superfamily_NAD(P)-binding Rossmann-fold domains	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short	-	no_errors	
ENSG00000245672	0	genome.wustl.edu	37	9	5919543	5919544	+	RNA	INS	-	-	ACACAC	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	5919543	5919544	-	ACACAC	INS	ENSG00000245672	ENST00000500003	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.004:0.005	-	-	-	no_errors	
EXOC3	11336	genome.wustl.edu	37	5	447698	447698	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	447698	447698	C	T	SNP	EXOC3	NM_007277	human	genbank	57_37b	+1	reviewed	silent	c.195	p.L65	0.617	NULL	HMMPfam_Sec6	-	no_errors	
FAM13A	10144	genome.wustl.edu	37	4	89744132	89744132	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	89744132	89744132	C	A	SNP	FAM13A	NM_001015045	human	genbank	57_37b	-1	validated	silent	c.24	p.L8	1.000	NULL	NULL	-	no_errors	
FAM48B2	646212	genome.wustl.edu	37	X	24329460	24329460	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	24329460	24329460	G	T	SNP	FAM48B2	NM_001136233	human	genbank	57_37b	-1	inferred	missense	c.1973	p.A658E	0.000	NULL	NULL	-	no_errors	
GABRG1	2565	genome.wustl.edu	37	4	46053637	46053637	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	46053637	46053637	G	C	SNP	GABRG1	NM_173536	human	genbank	57_37b	-1	reviewed	missense	c.935	p.T312S	1.000	superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors	
GPR133	283383	genome.wustl.edu	37	12	131616342	131616342	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	131616342	131616342	G	A	SNP	GPR133	NM_198827	human	genbank	57_37b	+1	validated	missense	c.2248	p.G750R	0.997	HMMPfam_7tm_2	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors	
KCNJ6	3763	genome.wustl.edu	37	21	39087022	39087022	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	39087022	39087022	T	C	SNP	KCNJ6	NM_002240	human	genbank	57_37b	-1	reviewed	silent	c.438	p.S146	0.659	HMMPfam_IRK,superfamily_SSF81324	HMMPfam_IRK,superfamily_SSF81324,superfamily_Ig_E-set	-	no_errors	
KIF18B	146909	genome.wustl.edu	37	17	43009058	43009058	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	43009058	43009058	G	A	SNP	KIF18B	NM_001080443	human	genbank	57_37b	-1	provisional	silent	c.1465	p.L489	0.000	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors	
MAP2K4	6416	genome.wustl.edu	37	17	11984671	11984672	+	Splice_Site	DEL	AG	AG	-	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	11984671	11984672	AG	-	DEL	MAP2K4	NM_003010	human	genbank	57_37b	+1	reviewed	splice_site_del	c.219-2_219-1	e3-1	1.000:1.000	-	-	(deletion:intron[11958309,11984672])	no_errors	
MAP2K4	6416	genome.wustl.edu	37	17	11984671	11984672	+	Splice_Site	DEL	AG	AG	-	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	11984671	11984672	AG	-	DEL	MAP2K4	NM_003010	human	genbank	57_37b	+1	reviewed	splice_site_del	c.219-2_219-1	e3-1	1.000:1.000	-	-	(deletion:intron[11958309,11984672])	no_errors	
MED23	9439	genome.wustl.edu	37	6	131937129	131937129	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	131937129	131937129	G	-	DEL	MED23	NM_004830	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.794	p.P265fs	1.000	NULL	NULL	(deletion:cds_exon[131937047,131937142])	no_errors	
MED23	9439	genome.wustl.edu	37	6	131937129	131937129	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	131937129	131937129	G	-	DEL	MED23	NM_004830	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.794	p.P265fs	1.000	NULL	NULL	(deletion:cds_exon[131937047,131937142])	no_errors	
MUS81	80198	genome.wustl.edu	37	11	65632201	65632201	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65632201	65632201	G	T	SNP	MUS81	NM_025128	human	genbank	57_37b	+1	validated	missense	c.1187	p.G396V	1.000	superfamily_Restrict_endonuc_II-like_core	superfamily_DNApol_B_N_like,superfamily_Restrict_endonuc_II-like_core,HMMPfam_ERCC4,HMMSmart_HhH1	-	no_errors	
NF1	4763	genome.wustl.edu	37	17	29588873	29588876	+	In_Frame_Del	DEL	TAGG	TAGG	-	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	TAGG	TAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	29588873	29588876	TAGG	-	DEL	NF1	NM_001042492	human	genbank	57_37b	+1	reviewed	in_frame_del	c.4722_4724	p.R1575in_frame_del	0.877:1.000:1.000	NULL	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	(deletion:cds_exon[29588729,29588875], intron[29588876,29592246])	no_errors	
NF1	4763	genome.wustl.edu	37	17	29588873	29588876	+	In_Frame_Del	DEL	TAGG	TAGG	-	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	TAGG	TAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	29588873	29588876	TAGG	-	DEL	NF1	NM_001042492	human	genbank	57_37b	+1	reviewed	in_frame_del	c.4722_4724	p.R1575in_frame_del	0.877:1.000:1.000	NULL	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	(deletion:cds_exon[29588729,29588875], intron[29588876,29592246])	no_errors	
OR1N1	138883	genome.wustl.edu	37	9	125288841	125288841	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	125288841	125288841	G	A	SNP	OR1N1	NM_012363	human	genbank	57_37b	-1	provisional	silent	c.732	p.C244	0.006	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors	
PCDH10	57575	genome.wustl.edu	37	4	134084410	134084410	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	134084410	134084410	C	T	SNP	PCDH10	NM_032961	human	genbank	57_37b	+1	reviewed	nonsense	c.3076	p.R1026*	1.000	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin,PatternScan_EGF_1	-	no_errors	
PCDH10	57575	genome.wustl.edu	37	4	134084410	134084410	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	134084410	134084410	C	T	SNP	PCDH10	NM_032961	human	genbank	57_37b	+1	reviewed	nonsense	c.3076	p.R1026*	1.000	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin,PatternScan_EGF_1	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors	
PRB1	5542	genome.wustl.edu	37	12	11506225	11506225	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	11506225	11506225	G	A	SNP	PRB1	NM_199353	human	genbank	57_37b	-1	reviewed	missense	c.413	p.S138F	0.009	NULL	NULL	-	no_errors	
RLIM	51132	genome.wustl.edu	37	X	73812045	73812045	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	73812045	73812045	G	A	SNP	RLIM	NM_016120	human	genbank	57_37b	-1	reviewed	missense	c.1105	p.R369C	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors	
RNF123	63891	genome.wustl.edu	37	3	49742580	49742580	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49742580	49742580	G	C	SNP	RNF123	NM_022064	human	genbank	57_37b	+1	reviewed	missense	c.2123	p.R708P	1.000	NULL	HMMPfam_SPRY,HMMSmart_SM00449,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors	
SCARA5	286133	genome.wustl.edu	37	8	27845103	27845103	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	27845103	27845103	G	A	SNP	SCARA5	NM_173833	human	genbank	57_37b	-1	provisional	silent	c.30	p.T10	0.997	NULL	HMMPfam_Collagen,superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	-	no_errors	
SH3TC1	54436	genome.wustl.edu	37	4	8228801	8228801	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	8228801	8228801	C	G	SNP	SH3TC1	NM_018986	human	genbank	57_37b	+1	validated	silent	c.1380	p.P460	0.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors	
SMAD9	4093	genome.wustl.edu	37	13	37446983	37446983	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	37446983	37446983	C	T	SNP	SMAD9	NM_001127217	human	genbank	57_37b	-1	reviewed	missense	c.482	p.R161H	1.000	NULL	superfamily_SMAD MH1 domain,HMMSmart_SM00523,HMMPfam_MH1,superfamily_SMAD/FHA domain,HMMPfam_MH2,HMMSmart_SM00524	-	no_errors	
SPTBN2	6712	genome.wustl.edu	37	11	66475053	66475053	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66475053	66475053	G	C	SNP	SPTBN2	NM_006946	human	genbank	57_37b	-1	reviewed	silent	c.1587	p.L529	0.873	superfamily_Spectrin repeat,HMMPfam_Spectrin	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors	
TM7SF3	51768	genome.wustl.edu	37	12	27133509	27133509	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	27133509	27133509	G	C	SNP	TM7SF3	NM_016551	human	genbank	57_37b	-1	validated	missense	c.1026	p.I342M	0.000	NULL	NULL	-	no_errors	
TTC7B	145567	genome.wustl.edu	37	14	91252558	91252558	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	91252558	91252558	C	T	SNP	TTC7B	NM_001010854	human	genbank	57_37b	-1	provisional	missense	c.236	p.R79H	1.000	superfamily_TPR-like	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,HMMPfam_TPR_2	-	no_errors	
USH1G	124590	genome.wustl.edu	37	17	72916760	72916760	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1BC-01	TCGA-E2-A1BC-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72916760	72916760	G	C	SNP	USH1G	NM_173477	human	genbank	57_37b	-1	reviewed	missense	c.171	p.D57E	1.000	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SAM_homology,HMMPfam_SAM_1,HMMSmart_SAM	-	no_errors	
