# Created: Sun May 27 08:11:09 EDT 2012 by cgaadm_deadline
# Job: 103101    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: GDAC_RPPA_preprocess urn:lsid:broadinstitute.org:cancer.genome.analysis:10070:10
# Parameters: 
#    Rppafile = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_DataMergerPipeline/BRCA/1269463/2.GDAC_DataMerger.Finished/BRCA.protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data.data.txt
#    annotationfile = file:/xchip/cga/reference/tcga_antibody_gene_annotations/2012_05_25/BRCA_rppa_antibody.txt
#    outputname = BRCA
#    colgene = 1
#    colantibody = 3
