Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
OR2F1	26211	hgsc.bcm.edu	36	7	143288834	143288834	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012369	exon1	c.A838G	p.I280V	.	.	.
KIAA1409	57578	hgsc.bcm.edu	36	14	93111256	93111256	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020818	exon17	c.T1639A	p.S547T	.	.	.
USHBP1	83878	hgsc.bcm.edu	36	19	17228463	17228463	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_031941	exon9	c.C1287G	p.V429V	.	.	.
ZNF254	9534	hgsc.bcm.edu	36	19	24101872	24101872	+	Missense_Mutation	SNP	A	A	T	rs61737180	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203282	exon4	c.A1230T	p.E410D	.	.	.
PODNL1	79883	hgsc.bcm.edu	36	19	13905766	13905766	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024825	exon7	c.G713A	p.R238H	.	.	.
TG	7038	hgsc.bcm.edu	36	8	134177641	134177641	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003235	exon43	c.G7414A	p.V2472M	.	.	.
HSF1	3297	hgsc.bcm.edu	36	8	145505832	145505832	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005526	exon6	c.C582G	p.I194M	.	.	.
AMPD1	270	hgsc.bcm.edu	36	1	115023833	115023833	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000036	exon7	c.C886T	p.R296C	.	.	.
EPRS	2058	hgsc.bcm.edu	36	1	218262324	218262324	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004446	exon9	c.G1103C	p.G368A	.	.	.
SYTL1	84958	hgsc.bcm.edu	36	1	27549529	27549529	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032872	exon10	c.G935A	p.R312Q	.	.	.
LAMA2	3908	hgsc.bcm.edu	36	6	129705249	129705249	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001079823	exon30	c.G4380A	p.K1460K	.	.	.
BPTF	2186	hgsc.bcm.edu	36	17	63386400	63386400	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_182641	exon24	c.T8208G	p.T2736T	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	C	T	rs28934578	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon5	c.G524A	p.R175H	TP53,lung,NS,Substitution - Missense,0	.	.
WDR16	146845	hgsc.bcm.edu	36	17	9456432	9456432	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_145054	exon8	c.G936A	p.S312S	.	.	.
NFATC2IP	84901	hgsc.bcm.edu	36	16	28874853	28874853	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032815	exon4	c.C632T	p.T211M	.	.	.
FA2H	79152	hgsc.bcm.edu	36	16	73307809	73307809	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024306	exon6	c.G976A	p.G326S	.	.	.
IFT80	57560	hgsc.bcm.edu	36	3	161478106	161478106	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001190242	exon16	c.G1472C	p.R491P	.	.	.
NLGN1	22871	hgsc.bcm.edu	36	3	175479934	175479934	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014932	exon6	c.G1449A	p.T483T	.	.	.
GRM7	2917	hgsc.bcm.edu	36	3	7595245	7595245	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000844	exon8	c.A1652G	p.Y551C	.	.	.
POLR3B	55703	hgsc.bcm.edu	36	12	105375115	105375115	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018082	exon21	c.A2363G	p.D788G	.	.	.
GABRA4	2557	hgsc.bcm.edu	36	4	46625080	46625080	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000809	exon9	c.C1584G	p.V528V	.	.	.
CYTL1	54360	hgsc.bcm.edu	36	4	5069502	5069502	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018659	exon3	c.C289T	p.R97W	.	.	.
KIT	3815	hgsc.bcm.edu	36	4	55218978	55218978	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000222	exon1	c.C40T	p.L14L	.	.	.
KCNS3	3790	hgsc.bcm.edu	36	2	17975998	17975998	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002252	exon3	c.A242G	p.N81S	.	.	.
BMPR2	659	hgsc.bcm.edu	36	2	203040507	203040507	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001204	exon3	c.G268C	p.D90H	.	.	.
DNMT3A	1788	hgsc.bcm.edu	36	2	25326064	25326064	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153759	exon2	c.G38A	p.R13H	.	.	.
CRIM1	51232	hgsc.bcm.edu	36	2	36557570	36557570	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_016441	exon6	c.A1026T	p.E342D	.	.	.
ARHGEF7	8874	hgsc.bcm.edu	36	13	110717982	110717982	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001113512	exon8	c.A950G	p.N317S	.	.	.
FREM2	341640	hgsc.bcm.edu	36	13	38164070	38164070	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_207361	exon1	c.A4589G	p.D1530G	.	.	.
ASCC1	51008	hgsc.bcm.edu	36	10	73527149	73527149	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2670-01	TCGA-A6-2670-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015947	exon10	c.C1023T	p.T341T	.	.	.
