Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ProSAPiP1	9762	broad.mit.edu	36	20	3094923	3094924	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014731	exon2	c.543_544insC	p.P181fs	.	.	.
MKL1	57591	broad.mit.edu	36	22	39146487	39146488	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020831	exon11	c.921_922insC	p.P307fs	.	.	.
SDR39U1	56948	broad.mit.edu	36	14	23979516	23979517	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020195	exon6	c.495_496insG	p.G165fs	.	.	.
RIMS2	9699	broad.mit.edu	36	8	104900969	104900970	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014677	exon1	c.58_59insT	p.V20fs	.	.	.
DOCK5	80005	broad.mit.edu	36	8	25238905	25238906	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024940	exon18	c.1828_1829insC	p.T610fs	.	.	.
PREX2	80243	broad.mit.edu	36	8	69155237	69155238	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024870	exon16	c.1648_1649insA	p.E550fs	.	.	.
DCAF15	90379	broad.mit.edu	36	19	13930917	13930918	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138353	exon7	c.845_846insC	p.S282fs	.	.	.
ZNF790	388536	broad.mit.edu	36	19	42001341	42001342	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206894	exon5	c.1745_1746insA	p.I582fs	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45103692	45103693	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003890	exon7	c.3776_3777insC	p.H1259fs	.	.	.
NOTCH2	4853	broad.mit.edu	36	1	120266505	120266506	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024408	exon28	c.5090_5091insG	p.V1697fs	.	.	.
PYGO2	90780	broad.mit.edu	36	1	153198651	153198652	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138300	exon3	c.449_450insC	p.Q150fs	.	.	.
IGSF8	93185	broad.mit.edu	36	1	158329055	158329056	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052868	exon5	c.1367_1368insG	p.E456fs	.	.	.
CLCNKA	1187	broad.mit.edu	36	1	16229138	16229139	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042704	exon14	c.1389_1390insG	p.P463fs	.	.	.
GPATCH2	55105	broad.mit.edu	36	1	215671118	215671119	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018040	exon10	c.1579_1580insA	p.S527fs	.	.	.
WDR78	79819	broad.mit.edu	36	1	67143606	67143607	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024763	exon2	c.211_212insT	p.A71fs	.	.	.
RBM24	221662	broad.mit.edu	36	6	17400187	17400188	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143942	exon4	c.569_570insT	p.A190fs	.	.	.
IMPA2	3613	broad.mit.edu	36	18	11989060	11989061	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014214	exon2	c.104_105insA	p.R35fs	.	.	.
NFE2	4778	broad.mit.edu	36	12	52972796	52972797	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006163	exon3	c.751_752insT	p.N251_E252delinsX	.	.	.
CDKL5	6792	broad.mit.edu	36	X	18578458	18578459	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003159	exon20	c.2805_2806insT	p.Y935fs	.	.	.
ACRC	93953	broad.mit.edu	36	X	70747309	70747310	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052957	exon11	c.1665_1666insT	p.G555fs	.	.	.
GPRIN3	285513	broad.mit.edu	36	4	90388290	90388291	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198281	exon2	c.1995_1996insA	p.K665fs	.	.	.
SERPINE2	5270	broad.mit.edu	36	2	224553313	224553314	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136530	exon7	c.1067_1068insA	p.I356fs	.	.	.
UGT1A10	54575	broad.mit.edu	36	2	234210415	234210416	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019075	exon1	c.508_509insG	p.R170fs	.	.	.
UBXN2A	165324	broad.mit.edu	36	2	24076203	24076204	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181713	exon7	c.742_743insA	p.Q248fs	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55251774	55251775	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142765	exon32	c.5511_5512insA	p.N1837fs	.	.	.
CDH10	1008	broad.mit.edu	36	5	24573449	24573450	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006727	exon3	c.323_324insA	p.T108fs	.	.	.
ZNF20	7568	broad.mit.edu	36	19	12119262	12119263	+	De_novo_Start_OutOfFrame	INS	-	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
PRR22	163154	broad.mit.edu	36	19	5735177	5735178	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
HBE1	3046	broad.mit.edu	36	11	5247857	5247858	+	De_novo_Start_OutOfFrame	INS	-	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
SEPT10	151011	broad.mit.edu	36	2	109659116	109659117	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
GLIS3	169792	broad.mit.edu	36	9	3888647	3888648	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
FBXO24	26261	broad.mit.edu	36	7	100036243	100036243	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163499	exon10	c.C1492T	p.Q498X	.	.	.
ZAN	7455	broad.mit.edu	36	7	100196088	100196088	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173059	exon19	c.G3835A	p.V1279M	.	.	.
SRRT	51593	broad.mit.edu	36	7	100323324	100323324	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128852	exon17	c.A2231G	p.K744R	.	.	.
ZNHIT1	10467	broad.mit.edu	36	7	100653741	100653741	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006349	exon4	c.G341A	p.R114H	.	.	.
CUX1	1523	broad.mit.edu	36	7	101632202	101632202	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181552	exon18	c.A2905G	p.K969E	.	.	.
SH2B2	10603	broad.mit.edu	36	7	101744492	101744492	+	Silent	SNP	G	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020979	exon5	c.G1174C	p.A392P	.	.	.
NAPEPLD	222236	broad.mit.edu	36	7	102547882	102547882	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198990	exon3	c.C319T	p.L107F	.	.	.
DNAJC2	27000	broad.mit.edu	36	7	102743466	102743466	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001129887	exon13	c.G1458A	p.T486T	.	.	.
RELN	5649	broad.mit.edu	36	7	103001887	103001887	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005045	exon30	c.G4399T	p.G1467C	.	.	.
NRCAM	4897	broad.mit.edu	36	7	107607956	107607956	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037132	exon22	c.G2798T	p.G933V	.	.	.
LRRN3	54674	broad.mit.edu	36	7	110551826	110551826	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018334	exon2	c.G1762T	p.E588X	.	.	.
TMEM168	64418	broad.mit.edu	36	7	112211549	112211549	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022484	exon2	c.C568T	p.L190L	.	.	.
PPP1R3A	5506	broad.mit.edu	36	7	113305894	113305894	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002711	exon4	c.A2489G	p.K830R	.	.	.
ST7	7982	broad.mit.edu	36	7	116565742	116565742	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018412	exon8	c.T814C	p.L272L	.	.	.
C7orf58	79974	broad.mit.edu	36	7	120416945	120416945	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024913	exon2	c.C34T	p.R12X	.	.	.
PTPRZ1	5803	broad.mit.edu	36	7	121403466	121403466	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002851	exon5	c.C460T	p.Q154X	.	.	.
RNF148	378925	broad.mit.edu	36	7	122129226	122129226	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198085	exon1	c.G815A	p.R272H	.	.	.
GRM8	2918	broad.mit.edu	36	7	126670441	126670441	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127323	exon2	c.C54T	p.T18T	.	.	.
FLNC	2318	broad.mit.edu	36	7	128272177	128272177	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001458	exon21	c.C3422T	p.P1141L	.	.	.
IRF5	3663	broad.mit.edu	36	7	128376088	128376088	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098627	exon9	c.C1477T	p.H493Y	.	.	.
PODXL	5420	broad.mit.edu	36	7	130846352	130846352	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018111	exon2	c.A481G	p.K161E	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131499515	131499515	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020911	exon24	c.G4426A	p.A1476T	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131515066	131515066	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020911	exon20	c.G3794A	p.R1265H	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131842849	131842849	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181775	exon3	c.G1144A	p.D382N	.	.	.
SLC13A4	26266	broad.mit.edu	36	7	135027653	135027653	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012450	exon11	c.G1178A	p.R393Q	.	.	.
SLC37A3	84255	broad.mit.edu	36	7	139704909	139704909	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032295	exon6	c.G521A	p.G174E	.	.	.
CLCN1	1180	broad.mit.edu	36	7	142723561	142723561	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000083	exon1	c.G134T	p.R45M	.	.	.
EZH2	2146	broad.mit.edu	36	7	148155279	148155279	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152998	exon6	c.G521A	p.R174H	.	.	.
ZNF746	155061	broad.mit.edu	36	7	148805699	148805699	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163474	exon5	c.G601A	p.A201T	.	.	.
ACCN3	9311	broad.mit.edu	36	7	150380726	150380726	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020322	exon10	c.C1591A	p.L531M	.	.	.
NOM1	64434	broad.mit.edu	36	7	156454562	156454562	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138400	exon10	c.G2319A	p.L773L	.	.	.
ESYT2	57488	broad.mit.edu	36	7	158220998	158220998	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020728	exon20	c.A2543G	p.N848S	.	.	.
SNX13	23161	broad.mit.edu	36	7	17896533	17896533	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015132	exon5	c.G418A	p.A140T	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21612640	21612640	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003777	exon19	c.T3720C	p.H1240H	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21642156	21642156	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003777	exon26	c.G4658T	p.S1553I	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21750695	21750695	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003777	exon50	c.G8291T	p.X2764L	.	.	.
GPNMB	10457	broad.mit.edu	36	7	23260328	23260328	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005340	exon3	c.C239T	p.A80V	.	.	.
EIF3B	8662	broad.mit.edu	36	7	2381557	2381557	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003751	exon14	c.G1897A	p.G633S	.	.	.
CHST12	55501	broad.mit.edu	36	7	2439737	2439737	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018641	exon2	c.G937A	p.E313K	.	.	.
OSBPL3	26031	broad.mit.edu	36	7	24840696	24840696	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145321	exon14	c.C1572T	p.C524C	.	.	.
HOXA1	3198	broad.mit.edu	36	7	27101936	27101936	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153620	exon1	c.G121A	p.A41T	.	.	.
JAZF1	221895	broad.mit.edu	36	7	27838953	27838953	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175061	exon5	c.G723A	p.M241I	.	.	.
CARD11	84433	broad.mit.edu	36	7	2912912	2912912	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032415	exon25	c.C3351T	p.Y1117Y	.	.	.
CCDC129	223075	broad.mit.edu	36	7	31580825	31580825	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194300	exon7	c.G542A	p.R181H	.	.	.
AOAH	313	broad.mit.edu	36	7	36536637	36536637	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001637	exon19	c.G1434A	p.E478E	.	.	.
VPS41	27072	broad.mit.edu	36	7	38763008	38763008	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014396	exon19	c.T1650C	p.S550S	.	.	.
POU6F2	11281	broad.mit.edu	36	7	39213700	39213700	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007252	exon5	c.C467T	p.A156V	.	.	.
CDK13	8621	broad.mit.edu	36	7	40069048	40069048	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003718	exon8	c.G2699A	p.C900Y	.	.	.
GLI3	2737	broad.mit.edu	36	7	42154548	42154548	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000168	exon3	c.G169A	p.A57T	.	.	.
SDK1	221935	broad.mit.edu	36	7	4243893	4243893	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152744	exon42	c.C6081T	p.F2027F	.	.	.
POLM	27434	broad.mit.edu	36	7	44079995	44079995	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013284	exon9	c.G1226A	p.C409Y	.	.	.
MYO1G	64005	broad.mit.edu	36	7	44971921	44971921	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033054	exon17	c.C2221T	p.R741C	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48237484	48237484	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152701	exon4	c.T385G	p.F129V	.	.	.
IKZF1	10320	broad.mit.edu	36	7	50435713	50435713	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006060	exon8	c.G1454A	p.G485D	.	.	.
TNRC18	84629	broad.mit.edu	36	7	5322176	5322176	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080495	exon25	c.G6799A	p.G2267R	.	.	.
RNF216	54476	broad.mit.edu	36	7	5721324	5721324	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207116	exon11	c.C1548T	p.R516R	.	.	.
ZNF680	340252	broad.mit.edu	36	7	63619306	63619306	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178558	exon4	c.C1261T	p.L421F	.	.	.
AUTS2	26053	broad.mit.edu	36	7	69893269	69893269	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015570	exon19	c.G3131A	p.R1044H	.	.	.
POM121	9883	broad.mit.edu	36	7	72051562	72051562	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172020	exon13	c.G2299A	p.G767S	.	.	.
BAZ1B	9031	broad.mit.edu	36	7	72529993	72529993	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032408	exon7	c.G1734A	p.K578K	.	.	.
HEATR2	54919	broad.mit.edu	36	7	735962	735962	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017802	exon2	c.C732T	p.D244D	.	.	.
PTPN12	5782	broad.mit.edu	36	7	77103100	77103100	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001131009	exon14	c.G1750A	p.E584K	.	.	.
HEATR2	54919	broad.mit.edu	36	7	780327	780327	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017802	exon10	c.C2048T	p.A683V	.	.	.
PCLO	27445	broad.mit.edu	36	7	82424117	82424117	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033026	exon5	c.C4088T	p.T1363M	.	.	.
PCLO	27445	broad.mit.edu	36	7	82602260	82602260	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033026	exon3	c.C2542T	p.P848S	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84532719	84532719	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152754	exon6	c.C675T	p.H225H	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84540270	84540270	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152754	exon4	c.G439A	p.G147R	.	.	.
KIAA1324L	222223	broad.mit.edu	36	7	86385746	86385746	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152748	exon11	c.C1040T	p.T347I	.	.	.
DMTF1	9988	broad.mit.edu	36	7	86655478	86655478	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142327	exon13	c.C1336T	p.R446C	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91408384	91408384	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147185	exon1	c.C35T	p.A12V	.	.	.
ANKIB1	54467	broad.mit.edu	36	7	91855264	91855264	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019004	exon14	c.G1879A	p.E627K	.	.	.
PON1	5444	broad.mit.edu	36	7	94775298	94775298	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000446	exon6	c.T659C	p.F220S	.	.	.
PON2	5445	broad.mit.edu	36	7	94877225	94877225	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000305	exon6	c.T619C	p.Y207H	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98371206	98371206	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003496	exon28	c.A4083G	p.S1361S	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98444014	98444014	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003496	exon68	c.A10703G	p.Y3568C	.	.	.
PTCD1	26024	broad.mit.edu	36	7	98868865	98868865	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015545	exon3	c.T566G	p.L189R	.	.	.
ZNF394	84124	broad.mit.edu	36	7	98929544	98929544	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032164	exon3	c.C1230T	p.G410G	.	.	.
AP4M1	9179	broad.mit.edu	36	7	99541030	99541030	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004722	exon11	c.C861T	p.S287S	.	.	.
BCAP29	55973	broad.mit.edu	36	7	107021776	107021776	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008405	exon3	c.334delT	p.F112fs	.	.	.
CDCA7L	55536	broad.mit.edu	36	7	21909240	21909240	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127371	exon8	c.1077delC	p.P359fs	.	.	.
ICA1	3382	broad.mit.edu	36	7	8164776	8164776	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004968	exon7	c.611delA	p.N204fs	.	.	.
ANKIB1	54467	broad.mit.edu	36	7	91774850	91774850	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019004	exon3	c.430delA	p.K144fs	.	.	.
SPTLC3	55304	broad.mit.edu	36	20	13019817	13019817	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018327	exon5	c.G694A	p.A232T	.	.	.
C20orf7	79133	broad.mit.edu	36	20	13745788	13745788	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039375	exon10	c.G886A	p.A296T	.	.	.
MACROD2	140733	broad.mit.edu	36	20	15896255	15896255	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033087	exon9	c.G260A	p.R87H	.	.	.
SEC23B	10483	broad.mit.edu	36	20	18471019	18471019	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032986	exon13	c.G1484A	p.R495H	.	.	.
SLC24A3	57419	broad.mit.edu	36	20	19612857	19612857	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020689	exon11	c.C939T	p.D313D	.	.	.
GGTLC1	92086	broad.mit.edu	36	20	23914824	23914824	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178312	exon3	c.C193T	p.R65C	.	.	.
KIF3B	9371	broad.mit.edu	36	20	30381780	30381780	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004798	exon8	c.C2144T	p.A715V	.	.	.
ITPA	3704	broad.mit.edu	36	20	3147166	3147166	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033453	exon6	c.T299G	p.L100R	.	.	.
TRIB3	57761	broad.mit.edu	36	20	316852	316852	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021158	exon2	c.C198T	p.S66S	.	.	.
MYH7B	57644	broad.mit.edu	36	20	33053535	33053535	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020884	exon44	c.G5926A	p.A1976T	.	.	.
DLGAP4	22839	broad.mit.edu	36	20	34558711	34558711	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183006	exon2	c.A221C	p.D74A	.	.	.
TGIF2	60436	broad.mit.edu	36	20	34652758	34652758	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199513	exon3	c.G224A	p.R75Q	.	.	.
SRC	6714	broad.mit.edu	36	20	35459625	35459625	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005417	exon9	c.G813A	p.R271R	.	.	.
TGM2	7052	broad.mit.edu	36	20	36194286	36194286	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004613	exon11	c.A1646G	p.E549G	.	.	.
CHD6	84181	broad.mit.edu	36	20	39550625	39550625	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032221	exon13	c.G1714A	p.V572I	.	.	.
CHD6	84181	broad.mit.edu	36	20	39560240	39560240	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032221	exon7	c.A956G	p.Y319C	.	.	.
ADRA1D	146	broad.mit.edu	36	20	4150289	4150289	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000678	exon2	c.G1600A	p.A534T	.	.	.
MYBL2	4605	broad.mit.edu	36	20	41764948	41764948	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002466	exon8	c.G1356A	p.S452S	.	.	.
TOX2	84969	broad.mit.edu	36	20	42116527	42116527	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032883	exon6	c.G700A	p.V234M	.	.	.
YWHAB	7529	broad.mit.edu	36	20	42963757	42963757	+	Missense_Mutation	SNP	C	T	T	rs11544163	unknown	TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139323	exon2	c.C169T	p.R57C	.	.	.
WFDC8	90199	broad.mit.edu	36	20	43617871	43617871	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130896	exon4	c.C328T	p.R110C	.	.	.
PLTP	5360	broad.mit.edu	36	20	43964545	43964545	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006227	exon11	c.G1048A	p.V350I	.	.	.
PLTP	5360	broad.mit.edu	36	20	43966902	43966902	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006227	exon10	c.C886A	p.P296T	.	.	.
MMP9	4318	broad.mit.edu	36	20	44074284	44074284	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004994	exon7	c.G1099A	p.G367R	.	.	.
PRND	23627	broad.mit.edu	36	20	4653653	4653653	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012409	exon2	c.C456T	p.G152G	.	.	.
PREX1	57580	broad.mit.edu	36	20	46705253	46705253	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020820	exon19	c.G2191A	p.V731I	.	.	.
ARFGEF2	10564	broad.mit.edu	36	20	47026090	47026090	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006420	exon14	c.G1905A	p.E635E	.	.	.
ZNF217	7764	broad.mit.edu	36	20	51632029	51632029	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006526	exon1	c.C744T	p.S248S	.	.	.
GPCPD1	56261	broad.mit.edu	36	20	5504563	5504563	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019593	exon9	c.G767A	p.C256Y	.	.	.
CTCFL	140690	broad.mit.edu	36	20	55532449	55532449	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080618	exon2	c.G219T	p.E73D	.	.	.
CDH26	60437	broad.mit.edu	36	20	58002859	58002859	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177980	exon11	c.C1586T	p.P529L	.	.	.
CHGB	1114	broad.mit.edu	36	20	5851379	5851379	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001819	exon4	c.G589A	p.A197T	.	.	.
ARFGAP1	55738	broad.mit.edu	36	20	61379942	61379942	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175609	exon6	c.G472A	p.A158T	.	.	.
C20orf195	79025	broad.mit.edu	36	20	61658225	61658225	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024059	exon2	c.C765T	p.C255C	.	.	.
ASXL1	171023	broad.mit.edu	36	20	30486286	30486286	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015338	exon12	c.2110delG	p.G704fs	.	.	.
PLUNC	51297	broad.mit.edu	36	20	31289626	31289626	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016583	exon3	c.265delG	p.G89fs	.	.	.
SIGLEC1	6614	broad.mit.edu	36	20	3622302	3622302	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023068	exon13	c.3300delG	p.G1100fs	.	.	.
RALGAPB	57148	broad.mit.edu	36	20	36610750	36610750	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020336	exon20	c.2907delT	p.D969fs	.	.	.
SEMG2	6407	broad.mit.edu	36	20	43284175	43284175	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003008	exon2	c.488delA	p.E163fs	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104479663	104479663	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138420	exon7	c.G13170T	p.K4390N	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104489958	104489958	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138420	exon7	c.G2875C	p.V959L	.	.	.
BRF1	2972	broad.mit.edu	36	14	104823701	104823701	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001519	exon2	c.C242T	p.S81L	.	.	.
POTEG	404785	broad.mit.edu	36	14	18633532	18633532	+	Missense_Mutation	SNP	A	G	G	rs2845218	by-cluster,by-2hit-2allele	TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005356	exon5	c.A1046G	p.H349R	.	.	.
RNASE9	390443	broad.mit.edu	36	14	20094918	20094918	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001110357	exon3	c.T151A	p.F51I	.	.	.
RNASE4	6038	broad.mit.edu	36	14	20237761	20237761	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002937	exon2	c.G391A	p.V131I	.	.	.
NDRG2	57447	broad.mit.edu	36	14	20560407	20560407	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016250	exon4	c.C165T	p.H55H	.	.	.
ARHGEF40	55701	broad.mit.edu	36	14	20613435	20613435	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018071	exon4	c.T1555C	p.S519P	.	.	.
RPGRIP1	57096	broad.mit.edu	36	14	20866495	20866495	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020366	exon18	c.G2968A	p.G990R	.	.	.
CDH24	64403	broad.mit.edu	36	14	22594402	22594402	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022478	exon3	c.C202T	p.L68L	.	.	.
RNF31	55072	broad.mit.edu	36	14	23690865	23690865	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017999	exon11	c.G1954A	p.A652T	.	.	.
TINF2	26277	broad.mit.edu	36	14	23779735	23779735	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012461	exon6	c.G791A	p.G264D	.	.	.
FOXG1	2290	broad.mit.edu	36	14	28307056	28307056	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005249	exon1	c.C820T	p.R274W	.	.	.
STRN3	29966	broad.mit.edu	36	14	30451014	30451014	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014574	exon9	c.G1248T	p.E416D	.	.	.
RALGAPA1	253959	broad.mit.edu	36	14	35299795	35299795	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194301	exon6	c.C538A	p.L180I	.	.	.
CTAGE5	4253	broad.mit.edu	36	14	38884932	38884932	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203354	exon21	c.T1869C	p.S623S	.	.	.
FAM179B	23116	broad.mit.edu	36	14	44550986	44550986	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015091	exon7	c.A3196G	p.K1066E	.	.	.
SOS2	6655	broad.mit.edu	36	14	49675200	49675200	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006939	exon18	c.A2838T	p.L946F	.	.	.
NIN	51199	broad.mit.edu	36	14	50329217	50329217	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182944	exon5	c.C398T	p.A133V	.	.	.
FBXO34	55030	broad.mit.edu	36	14	54887820	54887820	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152231	exon2	c.G959A	p.S320N	.	.	.
TOMM20L	387990	broad.mit.edu	36	14	57943893	57943893	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207377	exon4	c.C359A	p.P120H	.	.	.
SLC38A6	145389	broad.mit.edu	36	14	60521224	60521224	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153811	exon3	c.T260C	p.L87P	.	.	.
TMEM30B	161291	broad.mit.edu	36	14	60816726	60816726	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017970	exon1	c.G893A	p.G298D	.	.	.
HSPA2	3306	broad.mit.edu	36	14	64078131	64078131	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021979	exon1	c.G811A	p.E271K	.	.	.
SLC10A1	6554	broad.mit.edu	36	14	69333542	69333542	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003049	exon1	c.C84T	p.S28S	.	.	.
SIPA1L1	26037	broad.mit.edu	36	14	71266728	71266728	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015556	exon18	c.G4881A	p.P1627P	.	.	.
HEATR4	399671	broad.mit.edu	36	14	73057411	73057411	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203309	exon3	c.C826A	p.L276I	.	.	.
ABCD4	5826	broad.mit.edu	36	14	73832323	73832323	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005050	exon6	c.G655T	p.E219X	.	.	.
YLPM1	56252	broad.mit.edu	36	14	74345958	74345958	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019589	exon7	c.A4644G	p.P1548P	.	.	.
FAM164C	79696	broad.mit.edu	36	14	74608085	74608085	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024643	exon2	c.G1056A	p.P352P	.	.	.
C14orf179	112752	broad.mit.edu	36	14	75612729	75612729	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052873	exon4	c.C252T	p.N84N	.	.	.
SPTLC2	9517	broad.mit.edu	36	14	77091551	77091551	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004863	exon8	c.T1021C	p.L341L	.	.	.
SNW1	22938	broad.mit.edu	36	14	77259355	77259355	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012245	exon11	c.A1052C	p.E351A	.	.	.
FLRT2	23768	broad.mit.edu	36	14	85158154	85158154	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013231	exon2	c.C543A	p.D181E	.	.	.
FLRT2	23768	broad.mit.edu	36	14	85159120	85159120	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013231	exon2	c.G1509A	p.A503A	.	.	.
NDUFB1	4707	broad.mit.edu	36	14	91657798	91657798	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004545	exon1	c.C77T	p.A26V	.	.	.
LGMN	5641	broad.mit.edu	36	14	92248019	92248019	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008530	exon10	c.G645A	p.S215S	.	.	.
UBR7	55148	broad.mit.edu	36	14	92755338	92755338	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100417	exon7	c.G610A	p.A204T	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93209546	93209546	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020818	exon42	c.C6319T	p.L2107F	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93224790	93224790	+	Silent	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020818	exon45	c.T6522G	p.P2174P	.	.	.
SERPINA6	866	broad.mit.edu	36	14	93845865	93845865	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001756	exon3	c.G845A	p.R282Q	SERPINA6,skin,NS,Substitution - Missense,0	.	.
SERPINA5	5104	broad.mit.edu	36	14	94123533	94123533	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000624	exon3	c.G81T	p.M27I	.	.	.
BDKRB2	624	broad.mit.edu	36	14	95776659	95776659	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000623	exon3	c.G241A	p.V81I	.	.	.
AP1G2	8906	broad.mit.edu	36	14	23100665	23100665	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003917	exon18	c.1753delA	p.M585fs	.	.	.
ATL1	51062	broad.mit.edu	36	14	50157087	50157087	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181598	exon9	c.883delA	p.K295fs	.	.	.
RHOJ	57381	broad.mit.edu	36	14	62827407	62827407	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020663	exon5	c.557delT	p.V186fs	.	.	.
CLMN	79789	broad.mit.edu	36	14	94732702	94732702	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024734	exon10	c.2594delA	p.K865fs	.	.	.
CECR2	27443	broad.mit.edu	36	22	16409035	16409035	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031413	exon16	c.G3994A	p.G1332S	.	.	.
DGCR2	9993	broad.mit.edu	36	22	17435633	17435633	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001173534	exon2	c.C185T	p.A62V	.	.	.
UFD1L	7353	broad.mit.edu	36	22	17832787	17832787	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005659	exon6	c.G433A	p.A145T	.	.	.
CDC45	8318	broad.mit.edu	36	22	17851394	17851394	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178010	exon5	c.C352T	p.L118F	.	.	.
C22orf25	128989	broad.mit.edu	36	22	18432091	18432091	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152906	exon9	c.C737T	p.A246V	.	.	.
UBE2L3	7332	broad.mit.edu	36	22	20295226	20295226	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003347	exon3	c.C204T	p.I68I	.	.	.
TOP3B	8940	broad.mit.edu	36	22	20644767	20644767	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003935	exon14	c.T1580C	p.V527A	.	.	.
ZNF280B	140883	broad.mit.edu	36	22	21173277	21173277	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080764	exon4	c.A447G	p.T149T	.	.	.
BCR	613	broad.mit.edu	36	22	21926095	21926095	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021574	exon2	c.G1389A	p.S463S	.	.	.
MMP11	4320	broad.mit.edu	36	22	22453268	22453268	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005940	exon5	c.A839G	p.N280S	.	.	.
CABIN1	23523	broad.mit.edu	36	22	22762558	22762558	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199281	exon3	c.G25A	p.A9T	.	.	.
ADORA2A	135	broad.mit.edu	36	22	23167097	23167097	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000675	exon3	c.C879T	p.R293R	.	.	.
SGSM1	129049	broad.mit.edu	36	22	23624233	23624233	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098497	exon19	c.C2317T	p.R773W	.	.	.
ASPHD2	57168	broad.mit.edu	36	22	25169163	25169163	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020437	exon4	c.G1101A	p.P367P	.	.	.
INPP5J	27124	broad.mit.edu	36	22	29852959	29852959	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002837	exon5	c.A443G	p.Y148C	.	.	.
PLA2G3	50487	broad.mit.edu	36	22	29866149	29866149	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015715	exon1	c.G192A	p.A64A	.	.	.
PATZ1	23598	broad.mit.edu	36	22	30071325	30071325	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032051	exon1	c.G264A	p.G88G	.	.	.
C22orf28	51493	broad.mit.edu	36	22	31138069	31138069	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014306	exon1	c.C75T	p.G25G	.	.	.
TIMP3	7078	broad.mit.edu	36	22	31584108	31584108	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000362	exon4	c.C421A	p.L141M	.	.	.
CSF2RB	1439	broad.mit.edu	36	22	35663844	35663844	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000395	exon14	c.T2048C	p.V683A	.	.	.
DMC1	11144	broad.mit.edu	36	22	37275893	37275893	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007068	exon8	c.T477C	p.I159I	.	.	.
MCHR1	2847	broad.mit.edu	36	22	39407007	39407007	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005297	exon2	c.C398T	p.A133V	.	.	.
ST13	6767	broad.mit.edu	36	22	39576784	39576784	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003932	exon2	c.G157A	p.E53K	.	.	.
WBP2NL	164684	broad.mit.edu	36	22	40752802	40752802	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152613	exon6	c.G601A	p.V201I	.	.	.
FAM109B	150368	broad.mit.edu	36	22	40803389	40803389	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002034	exon3	c.G146A	p.G49D	.	.	.
PACSIN2	11252	broad.mit.edu	36	22	41614739	41614739	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184971	exon5	c.G463A	p.A155T	.	.	.
PARVG	64098	broad.mit.edu	36	22	42915040	42915040	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001137606	exon5	c.C196T	p.R66C	.	.	.
IL17REL	400935	broad.mit.edu	36	22	48779873	48779873	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001694	exon9	c.G575A	p.R192Q	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48941574	48941574	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164104	exon25	c.G3379A	p.G1127R	.	.	.
TUBGCP6	85378	broad.mit.edu	36	22	49001180	49001180	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020461	exon16	c.G3735A	p.V1245V	.	.	.
ARSA	410	broad.mit.edu	36	22	49412187	49412187	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085428	exon3	c.G367A	p.D123N	.	.	.
TAB1	10454	broad.mit.edu	36	22	38154119	38154119	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153497	exon10	c.1292delC	p.T431fs	.	.	.
DNMT1	1786	broad.mit.edu	36	19	10128124	10128124	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130823	exon18	c.G1342A	p.E448K	.	.	.
KRI1	65095	broad.mit.edu	36	19	10525956	10525956	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023008	exon19	c.G1801A	p.A601T	.	.	.
QTRT1	81890	broad.mit.edu	36	19	10684637	10684637	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031209	exon9	c.G980A	p.R327H	.	.	.
ZNF44	51710	broad.mit.edu	36	19	12244978	12244978	+	Silent	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016264	exon4	c.C1092A	p.P364P	.	.	.
MAN2B1	4125	broad.mit.edu	36	19	12621201	12621201	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000528	exon19	c.C2309T	p.P770L	.	.	.
MAN2B1	4125	broad.mit.edu	36	19	12621969	12621969	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000528	exon17	c.C2114A	p.P705Q	.	.	.
C19orf43	79002	broad.mit.edu	36	19	12703219	12703219	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024038	exon2	c.G362A	p.G121D	.	.	.
RTBDN	83546	broad.mit.edu	36	19	12801786	12801786	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031429	exon3	c.G104A	p.C35Y	.	.	.
ASF1B	55723	broad.mit.edu	36	19	14092404	14092404	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018154	exon4	c.G476T	p.R159M	.	.	.
LPHN1	22859	broad.mit.edu	36	19	14135139	14135139	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014921	exon5	c.G474A	p.W158X	.	.	.
EMR2	30817	broad.mit.edu	36	19	14737163	14737163	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152920	exon9	c.A728C	p.Y243S	.	.	.
NOTCH3	4854	broad.mit.edu	36	19	15133459	15133459	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000435	exon33	c.C5980A	p.H1994N	.	.	.
CYP4F22	126410	broad.mit.edu	36	19	15501597	15501597	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173483	exon4	c.G300T	p.M100I	.	.	.
CYP4F12	66002	broad.mit.edu	36	19	15650169	15650169	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023944	exon3	c.C297T	p.I99I	.	.	.
CYP4F12	66002	broad.mit.edu	36	19	15668285	15668285	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023944	exon12	c.T1360C	p.S454P	.	.	.
CYP4F2	8529	broad.mit.edu	36	19	15869283	15869283	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001082	exon2	c.C139T	p.R47C	.	.	.
CIB3	117286	broad.mit.edu	36	19	16140083	16140083	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_054113	exon4	c.C211A	p.R71S	.	.	.
MYO9B	4650	broad.mit.edu	36	19	17156791	17156791	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130065	exon17	c.T2491A	p.F831I	.	.	.
LRRC25	126364	broad.mit.edu	36	19	18363854	18363854	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145256	exon2	c.G861A	p.L287L	.	.	.
TMEM59L	25789	broad.mit.edu	36	19	18588909	18588909	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012109	exon5	c.G661A	p.V221M	.	.	.
NCAN	1463	broad.mit.edu	36	19	19190907	19190907	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004386	exon3	c.G257A	p.G86D	.	.	.
ZNF253	56242	broad.mit.edu	36	19	19863411	19863411	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021047	exon4	c.G355A	p.V119M	.	.	.
DOT1L	84444	broad.mit.edu	36	19	2150922	2150922	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032482	exon8	c.C691T	p.R231X	.	.	.
ZNF43	7594	broad.mit.edu	36	19	21783028	21783028	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003423	exon4	c.T1651G	p.S551A	.	.	.
ZNF681	148213	broad.mit.edu	36	19	23718544	23718544	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138286	exon4	c.G1648A	p.A550T	.	.	.
ZNF254	9534	broad.mit.edu	36	19	24102064	24102064	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203282	exon4	c.C1422A	p.S474S	.	.	.
ZNF536	9745	broad.mit.edu	36	19	35627244	35627244	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014717	exon2	c.A935C	p.E312A	.	.	.
PDCD5	9141	broad.mit.edu	36	19	37767713	37767713	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004708	exon3	c.A122G	p.N41S	.	.	.
SLC7A9	11136	broad.mit.edu	36	19	38026615	38026615	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126335	exon10	c.G1060A	p.A354T	.	.	.
WDR88	126248	broad.mit.edu	36	19	38358144	38358144	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173479	exon11	c.C1245T	p.C415C	.	.	.
CEBPG	1054	broad.mit.edu	36	19	38562153	38562153	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001806	exon2	c.G168A	p.S56S	.	.	.
ZNF792	126375	broad.mit.edu	36	19	40141592	40141592	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175872	exon4	c.G1007A	p.S336N	.	.	.
MAG	4099	broad.mit.edu	36	19	40478578	40478578	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199216	exon4	c.G194A	p.R65H	.	.	.
MLL4	9757	broad.mit.edu	36	19	40910453	40910453	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014727	exon17	c.G4317A	p.G1439G	.	.	.
ARHGAP33	115703	broad.mit.edu	36	19	40961214	40961214	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052948	exon5	c.C279A	p.S93S	.	.	.
POLR2I	5438	broad.mit.edu	36	19	41296767	41296767	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006233	exon5	c.C305T	p.A102V	.	.	.
ZNF529	57711	broad.mit.edu	36	19	41729788	41729788	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145649	exon6	c.A1512G	p.K504K	.	.	.
SHD	56961	broad.mit.edu	36	19	4235783	4235783	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020209	exon4	c.T598C	p.F200L	.	.	.
SIPA1L3	23094	broad.mit.edu	36	19	43384446	43384446	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015073	exon20	c.C5089T	p.P1697S	.	.	.
KCNK6	9424	broad.mit.edu	36	19	43509089	43509089	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004823	exon2	c.G339A	p.T113T	.	.	.
KCNK6	9424	broad.mit.edu	36	19	43509287	43509287	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004823	exon2	c.C537T	p.V179V	.	.	.
RINL	126432	broad.mit.edu	36	19	44053286	44053286	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198445	exon8	c.T446C	p.V149A	.	.	.
FBXO17	115290	broad.mit.edu	36	19	44127578	44127578	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148169	exon5	c.C591T	p.G197G	.	.	.
PLIN4	729359	broad.mit.edu	36	19	4463415	4463415	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080400	exon3	c.C1515T	p.T505T	.	.	.
FBL	2091	broad.mit.edu	36	19	45022971	45022971	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001436	exon3	c.A206T	p.N69I	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45124933	45124933	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003890	exon2	c.G1176A	p.S392S	.	.	.
SERTAD3	29946	broad.mit.edu	36	19	45639409	45639409	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203344	exon2	c.G419A	p.R140Q	.	.	.
TGFB1	7040	broad.mit.edu	36	19	46539916	46539916	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000660	exon4	c.C711T	p.N237N	.	.	.
ATP1A3	478	broad.mit.edu	36	19	47180925	47180925	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152296	exon8	c.G978T	p.L326L	.	.	.
PSG1	5669	broad.mit.edu	36	19	48064835	48064835	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006905	exon4	c.A901G	p.T301A	.	.	.
IRGQ	126298	broad.mit.edu	36	19	48788995	48788995	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007561	exon3	c.G895A	p.A299T	.	.	.
IRGC	56269	broad.mit.edu	36	19	48914814	48914814	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019612	exon2	c.C264T	p.G88G	.	.	.
CEACAM20	125931	broad.mit.edu	36	19	49721093	49721093	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102597	exon2	c.C77A	p.P26H	.	.	.
PVRL2	5819	broad.mit.edu	36	19	50067243	50067243	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002856	exon3	c.C772T	p.R258C	.	.	.
RSPH6A	81492	broad.mit.edu	36	19	50999870	50999870	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030785	exon3	c.C1133T	p.T378M	.	.	.
PRKD2	25865	broad.mit.edu	36	19	51873538	51873538	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079881	exon17	c.G2293A	p.A765T	.	.	.
GRLF1	2909	broad.mit.edu	36	19	52114751	52114751	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004491	exon1	c.C979T	p.R327C	.	.	.
PLA2G4C	8605	broad.mit.edu	36	19	53257119	53257119	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159323	exon14	c.G1205A	p.R402Q	.	.	.
GRIN2D	2906	broad.mit.edu	36	19	53636928	53636928	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000836	exon11	c.C2343T	p.G781G	.	.	.
SPHK2	56848	broad.mit.edu	36	19	53821159	53821159	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020126	exon3	c.G239A	p.R80H	.	.	.
TULP2	7288	broad.mit.edu	36	19	54083201	54083201	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003323	exon8	c.G766A	p.E256K	.	.	.
SLC17A7	57030	broad.mit.edu	36	19	54625679	54625679	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020309	exon12	c.C1592T	p.P531L	.	.	.
SLC17A7	57030	broad.mit.edu	36	19	54627898	54627898	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020309	exon8	c.C999T	p.F333F	.	.	.
SCAF1	58506	broad.mit.edu	36	19	54847863	54847863	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021228	exon7	c.C2405T	p.A802V	.	.	.
AKT1S1	84335	broad.mit.edu	36	19	55066755	55066755	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098632	exon4	c.G488C	p.G163A	.	.	.
TBC1D17	79735	broad.mit.edu	36	19	55075390	55075390	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168222	exon3	c.A139G	p.T47A	.	.	.
POLD1	5424	broad.mit.edu	36	19	55608924	55608924	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002691	exon19	c.G2364A	p.S788S	.	.	.
SIGLEC10	89790	broad.mit.edu	36	19	56610124	56610124	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171156	exon8	c.C1207T	p.H403Y	.	.	.
FPR2	2358	broad.mit.edu	36	19	56964728	56964728	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001462	exon2	c.G1005A	p.T335T	.	.	.
ZNF350	59348	broad.mit.edu	36	19	57160787	57160787	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021632	exon5	c.C731T	p.S244F	.	.	.
POLRMT	5442	broad.mit.edu	36	19	581096	581096	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005035	exon3	c.C266T	p.A89V	.	.	.
ZNF816	125893	broad.mit.edu	36	19	58146426	58146426	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031665	exon5	c.T414C	p.S138S	.	.	.
PRKCG	5582	broad.mit.edu	36	19	59088089	59088089	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002739	exon8	c.A857T	p.Y286F	.	.	.
TMC4	147798	broad.mit.edu	36	19	59361009	59361009	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145303	exon6	c.G919A	p.V307I	.	.	.
TSEN34	79042	broad.mit.edu	36	19	59387266	59387266	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077446	exon1	c.G239T	p.S80I	.	.	.
LILRA3	11026	broad.mit.edu	36	19	59494322	59494322	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006865	exon5	c.A931G	p.S311G	.	.	.
LILRA4	23547	broad.mit.edu	36	19	59540649	59540649	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012276	exon5	c.C786T	p.G262G	.	.	.
LAIR1	3903	broad.mit.edu	36	19	59568221	59568221	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021706	exon1	c.G3C	p.M1I	.	.	.
TTYH1	57348	broad.mit.edu	36	19	59638840	59638840	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020659	exon12	c.A1289G	p.D430G	.	.	.
TNNI3	7137	broad.mit.edu	36	19	60357985	60357985	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000363	exon6	c.G308A	p.R103H	.	.	.
U2AF2	11338	broad.mit.edu	36	19	60871927	60871927	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007279	exon9	c.G902A	p.G301D	.	.	.
NLRP11	204801	broad.mit.edu	36	19	61021124	61021124	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145007	exon4	c.C229T	p.R77C	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61062315	61062315	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_134444	exon3	c.G1744A	p.D582N	.	.	.
ZFP28	140612	broad.mit.edu	36	19	61758401	61758401	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020828	exon8	c.C2435A	p.S812Y	.	.	.
ZIM3	114026	broad.mit.edu	36	19	62338855	62338855	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052882	exon5	c.G662T	p.R221M	.	.	.
AURKC	6795	broad.mit.edu	36	19	62435738	62435738	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003160	exon4	c.C211T	p.R71C	.	.	.
ZNF154	7710	broad.mit.edu	36	19	62908134	62908134	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085384	exon2	c.C59T	p.A20V	.	.	.
ZSCAN18	65982	broad.mit.edu	36	19	63293378	63293378	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145542	exon2	c.G237T	p.P79P	.	.	.
ZNF324B	388569	broad.mit.edu	36	19	63659293	63659293	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207395	exon4	c.G1170A	p.T390T	.	.	.
SLC27A5	10998	broad.mit.edu	36	19	63714575	63714575	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012254	exon1	c.C560T	p.A187V	.	.	.
VAV1	7409	broad.mit.edu	36	19	6784931	6784931	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005428	exon19	c.C1744T	p.R582C	.	.	.
FBN3	84467	broad.mit.edu	36	19	8046180	8046180	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032447	exon59	c.C7569T	p.G2523G	.	.	.
HNRNPM	4670	broad.mit.edu	36	19	8438431	8438431	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005968	exon8	c.G797A	p.G266D	.	.	.
MUC16	94025	broad.mit.edu	36	19	8886653	8886653	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon15	c.G36801T	p.K12267N	.	.	.
MUC16	94025	broad.mit.edu	36	19	8946411	8946411	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon1	c.C6404A	p.P2135H	.	.	.
MUC16	94025	broad.mit.edu	36	19	8951013	8951013	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon1	c.A1802G	p.H601R	.	.	.
ZNF559	84527	broad.mit.edu	36	19	9314569	9314569	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032497	exon6	c.C1442T	p.T481I	.	.	.
ATG4D	84971	broad.mit.edu	36	19	10518546	10518546	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032885	exon4	c.525delC	p.G175fs	.	.	.
ZNF793	390927	broad.mit.edu	36	19	42720255	42720255	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013659	exon8	c.855delT	p.C285fs	.	.	.
IRGQ	126298	broad.mit.edu	36	19	48788406	48788408	+	In_Frame_Del	DEL	GCC	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007561	exon3	c.1482_1484del	p.494_495del	.	.	.
FBXO46	23403	broad.mit.edu	36	19	50907927	50907927	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080469	exon2	c.667delG	p.D223fs	.	.	.
ZNF28	7576	broad.mit.edu	36	19	57996214	57996214	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006969	exon4	c.696delA	p.K232fs	.	.	.
PPP6R1	22870	broad.mit.edu	36	19	60439848	60439848	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014931	exon17	c.1963delC	p.R655fs	.	.	.
USP29	57663	broad.mit.edu	36	19	62332051	62332051	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020903	exon4	c.196delA	p.K66fs	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100935361	100935361	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152564	exon56	c.A10568G	p.Y3523C	.	.	.
PABPC1	26986	broad.mit.edu	36	8	101794099	101794099	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002568	exon6	c.G833A	p.R278H	.	.	.
SOX7	83595	broad.mit.edu	36	8	10621269	10621269	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031439	exon2	c.G556T	p.G186C	.	.	.
FAM167A	83648	broad.mit.edu	36	8	11319500	11319500	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053279	exon3	c.G437T	p.G146V	.	.	.
BLK	640	broad.mit.edu	36	8	11449798	11449798	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001715	exon7	c.C610T	p.H204Y	.	.	.
ENPP2	5168	broad.mit.edu	36	8	120677272	120677272	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006209	exon12	c.A1124C	p.D375A	.	.	.
EFR3A	23167	broad.mit.edu	36	8	133083190	133083190	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015137	exon20	c.T2160C	p.V720V	.	.	.
PHF20L1	51105	broad.mit.edu	36	8	133918104	133918104	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016018	exon16	c.C2047T	p.R683X	.	.	.
TG	7038	broad.mit.edu	36	8	134017192	134017192	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003235	exon25	c.G4942A	p.A1648T	.	.	.
TG	7038	broad.mit.edu	36	8	134103528	134103528	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003235	exon40	c.C6987T	p.I2329I	.	.	.
KHDRBS3	10656	broad.mit.edu	36	8	136630207	136630207	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006558	exon4	c.C353T	p.A118V	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139220519	139220519	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015912	exon18	c.T3793C	p.L1265L	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139233249	139233249	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015912	exon13	c.G2651A	p.R884H	.	.	.
TSNARE1	203062	broad.mit.edu	36	8	143425079	143425079	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145003	exon3	c.T170C	p.V57A	.	.	.
CYP11B1	1584	broad.mit.edu	36	8	143955162	143955162	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001026213	exon4	c.G737A	p.R246H	.	.	.
PARP10	84875	broad.mit.edu	36	8	145130559	145130559	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032789	exon6	c.C1487T	p.A496V	.	.	.
CPSF1	29894	broad.mit.edu	36	8	145595010	145595010	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013291	exon17	c.G1605A	p.M535I	.	.	.
COMMD5	28991	broad.mit.edu	36	8	146047312	146047312	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081004	exon2	c.G216A	p.G72G	.	.	.
PCM1	5108	broad.mit.edu	36	8	17913555	17913555	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006197	exon34	c.A5450T	p.D1817V	.	.	.
ARHGEF10	9639	broad.mit.edu	36	8	1802168	1802168	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014629	exon6	c.G615T	p.W205C	.	.	.
XPO7	23039	broad.mit.edu	36	8	21891250	21891250	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015024	exon8	c.C787T	p.Q263X	.	.	.
XPO7	23039	broad.mit.edu	36	8	21900668	21900668	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015024	exon14	c.A1648G	p.M550V	.	.	.
HR	55806	broad.mit.edu	36	8	22042459	22042459	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018411	exon2	c.C170T	p.P57L	.	.	.
LGI3	203190	broad.mit.edu	36	8	22062135	22062135	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139278	exon8	c.C1130T	p.T377I	.	.	.
KIAA1967	57805	broad.mit.edu	36	8	22527683	22527683	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021174	exon9	c.C838T	p.R280W	.	.	.
BIN3	55909	broad.mit.edu	36	8	22537504	22537504	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018688	exon8	c.C484T	p.R162X	.	.	.
CLU	1191	broad.mit.edu	36	8	27513351	27513351	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171138	exon7	c.G1060A	p.E354K	.	.	.
GOLGA7	51125	broad.mit.edu	36	8	41482683	41482683	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016099	exon4	c.C361T	p.R121X	.	.	.
ANK1	286	broad.mit.edu	36	8	41700239	41700239	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020475	exon8	c.C781T	p.R261W	.	.	.
C8orf42	157695	broad.mit.edu	36	8	432406	432406	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175075	exon3	c.C551T	p.A184V	.	.	.
POTEA	340441	broad.mit.edu	36	8	43271663	43271663	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005365	exon3	c.T492C	p.Y164Y	.	.	.
KIAA0146	23514	broad.mit.edu	36	8	48788702	48788702	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080394	exon16	c.A2287G	p.M763V	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48909437	48909437	+	Silent	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081640	exon59	c.T8024G	p.L2675R	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52532616	52532616	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144651	exon9	c.T977G	p.L326R	.	.	.
NPBWR1	2831	broad.mit.edu	36	8	54015165	54015165	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005285	exon1	c.G145A	p.A49T	.	.	.
ATP6V1H	51606	broad.mit.edu	36	8	54847216	54847216	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015941	exon10	c.G935A	p.C312Y	.	.	.
LYPLA1	10434	broad.mit.edu	36	8	55126233	55126233	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006330	exon8	c.T531C	p.V177V	.	.	.
SOX17	64321	broad.mit.edu	36	8	55533488	55533488	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022454	exon1	c.T237C	p.A79A	.	.	.
LYN	4067	broad.mit.edu	36	8	57085047	57085047	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002350	exon13	c.G1363A	p.A455T	.	.	.
CHD7	55636	broad.mit.edu	36	8	61896955	61896955	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017780	exon10	c.C2750T	p.T917M	.	.	.
PDE7A	5150	broad.mit.edu	36	8	66809631	66809631	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002603	exon7	c.C570T	p.H190H	.	.	.
MSC	9242	broad.mit.edu	36	8	72918744	72918744	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005098	exon1	c.C224A	p.P75H	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73150170	73150170	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007332	exon1	c.G29A	p.R10H	.	.	.
RDH10	157506	broad.mit.edu	36	8	74397754	74397754	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172037	exon6	c.A955G	p.K319E	.	.	.
HNF4G	3174	broad.mit.edu	36	8	76627979	76627979	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004133	exon5	c.G607A	p.D203N	.	.	.
HNF4G	3174	broad.mit.edu	36	8	76633608	76633608	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004133	exon8	c.G874A	p.D292N	.	.	.
ZFAND1	79752	broad.mit.edu	36	8	82788726	82788726	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170797	exon6	c.C462T	p.G154G	.	.	.
PSKH2	85481	broad.mit.edu	36	8	87145653	87145653	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033126	exon2	c.G509T	p.G170V	.	.	.
RUNX1T1	862	broad.mit.edu	36	8	93052134	93052134	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198626	exon12	c.G1467A	p.T489T	.	.	.
KIAA1429	25962	broad.mit.edu	36	8	95573110	95573110	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015496	exon22	c.T5012C	p.I1671T	.	.	.
STK3	6788	broad.mit.edu	36	8	99661110	99661110	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006281	exon8	c.T906C	p.H302H	.	.	.
ASAH1	427	broad.mit.edu	36	8	17966294	17966294	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004315	exon6	c.457delT	p.Y153fs	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52414808	52414808	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144651	exon21	c.4075delA	p.T1359fs	.	.	.
RP1	6101	broad.mit.edu	36	8	55703930	55703930	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006269	exon4	c.4935delT	p.S1645fs	.	.	.
CA2	760	broad.mit.edu	36	8	86573887	86573887	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000067	exon4	c.434delT	p.I145fs	.	.	.
KIAA1429	25962	broad.mit.edu	36	8	95608086	95608086	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015496	exon8	c.1562delT	p.L521X	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103125032	103125032	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001854	exon63	c.A4777C	p.M1593L	.	.	.
PEX14	5195	broad.mit.edu	36	1	10601008	10601008	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004565	exon5	c.G331A	p.A111T	.	.	.
CASZ1	54897	broad.mit.edu	36	1	10628913	10628913	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079843	exon17	c.C3555T	p.L1185L	.	.	.
CASZ1	54897	broad.mit.edu	36	1	10636435	10636435	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079843	exon11	c.G2266A	p.A756T	.	.	.
VAV3	10451	broad.mit.edu	36	1	108123597	108123597	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006113	exon3	c.C362T	p.A121V	.	.	.
FNDC7	163479	broad.mit.edu	36	1	109072194	109072194	+	Silent	SNP	C	A	A	rs61740850	unknown	TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144937	exon7	c.C1353A	p.P451P	.	.	.
WDR47	22911	broad.mit.edu	36	1	109327463	109327463	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014969	exon11	c.G2062A	p.V688M	.	.	.
CELSR2	1952	broad.mit.edu	36	1	109608711	109608711	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001408	exon11	c.C5402A	p.P1801Q	.	.	.
CELSR2	1952	broad.mit.edu	36	1	109615818	109615818	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001408	exon28	c.G7877A	p.R2626H	.	.	.
RAP1A	5906	broad.mit.edu	36	1	112048507	112048507	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010935	exon7	c.G344A	p.G115D	.	.	.
AMPD1	270	broad.mit.edu	36	1	115017398	115017398	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000036	exon16	c.G2203A	p.G735S	.	.	.
C1orf161	126868	broad.mit.edu	36	1	116471753	116471753	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152367	exon5	c.C625T	p.R209C	.	.	.
UBE2J2	118424	broad.mit.edu	36	1	1180664	1180664	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194315	exon8	c.G610T	p.D204Y	.	.	.
PLOD1	5351	broad.mit.edu	36	1	11939593	11939593	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000302	exon7	c.G676A	p.V226M	.	.	.
PRAMEF1	65121	broad.mit.edu	36	1	12776936	12776936	+	Silent	SNP	G	A	A	rs1063766	unknown	TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023013	exon3	c.G573A	p.P191P	.	.	.
PRDM2	7799	broad.mit.edu	36	1	13979603	13979603	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007257	exon3	c.G2123T	p.G708V	.	.	.
NBPF15	284565	broad.mit.edu	36	1	146861178	146861178	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102663	exon16	c.G1927A	p.A643T	.	.	.
SV2A	9900	broad.mit.edu	36	1	148147988	148147988	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014849	exon6	c.C1168T	p.R390X	.	.	.
ARNT	405	broad.mit.edu	36	1	149056236	149056236	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001197325	exon16	c.T1600A	p.F534I	.	.	.
TMOD4	29765	broad.mit.edu	36	1	149413592	149413592	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013353	exon3	c.C179T	p.T60M	.	.	.
POGZ	23126	broad.mit.edu	36	1	149647225	149647225	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145796	exon13	c.C2065T	p.R689X	.	.	.
CGN	57530	broad.mit.edu	36	1	149773206	149773206	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020770	exon15	c.C2874T	p.D958D	.	.	.
LINGO4	339398	broad.mit.edu	36	1	150040877	150040877	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004432	exon2	c.G928A	p.A310T	.	.	.
TCHH	7062	broad.mit.edu	36	1	150347841	150347841	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007113	exon2	c.A4476G	p.Q1492Q	.	.	.
UBAP2L	9898	broad.mit.edu	36	1	152490164	152490164	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014847	exon13	c.G1237A	p.A413T	.	.	.
KAZ	23254	broad.mit.edu	36	1	15300850	15300850	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201628	exon11	c.G1772A	p.S591N	.	.	.
DCST2	127579	broad.mit.edu	36	1	153262298	153262298	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144622	exon14	c.C2024A	p.P675H	.	.	.
DCST2	127579	broad.mit.edu	36	1	153263641	153263641	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144622	exon11	c.T1673C	p.L558P	.	.	.
FAM189B	10712	broad.mit.edu	36	1	153487027	153487027	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198264	exon6	c.C886T	p.P296S	.	.	.
YY1AP1	55249	broad.mit.edu	36	1	153905103	153905103	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198906	exon9	c.G1016A	p.R339H	.	.	.
RXFP4	339403	broad.mit.edu	36	1	154178746	154178746	+	Silent	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181885	exon1	c.A622C	p.R208R	.	.	.
ARHGEF11	9826	broad.mit.edu	36	1	155205718	155205718	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198236	exon10	c.C805T	p.R269C	.	.	.
KIRREL	55243	broad.mit.edu	36	1	156326132	156326132	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018240	exon10	c.G1172T	p.G391V	.	.	.
IFI16	3428	broad.mit.edu	36	1	157290103	157290103	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005531	exon10	c.G2074T	p.G692W	.	.	.
CADM3	57863	broad.mit.edu	36	1	157430378	157430378	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021189	exon6	c.G717A	p.A239A	.	.	.
OR10J3	441911	broad.mit.edu	36	1	157550230	157550230	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004467	exon1	c.C844T	p.H282Y	.	.	.
OR10J3	441911	broad.mit.edu	36	1	157550386	157550386	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004467	exon1	c.G688A	p.A230T	.	.	.
OR10J5	127385	broad.mit.edu	36	1	157772124	157772124	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004469	exon1	c.C298T	p.Q100X	.	.	.
FCRL6	343413	broad.mit.edu	36	1	158050668	158050668	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004310	exon8	c.T1109C	p.V370A	.	.	.
IGSF9	57549	broad.mit.edu	36	1	158169024	158169024	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135050	exon10	c.G1147A	p.A383T	.	.	.
ATP1A2	477	broad.mit.edu	36	1	158365178	158365178	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000702	exon9	c.G1130A	p.G377D	.	.	.
C1orf192	257177	broad.mit.edu	36	1	159602891	159602891	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013625	exon2	c.T52C	p.Y18H	.	.	.
FCGR3B	2215	broad.mit.edu	36	1	159866385	159866385	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000570	exon3	c.T126C	p.S42S	.	.	.
SPEN	23013	broad.mit.edu	36	1	16133690	16133690	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015001	exon11	c.A8368G	p.M2790V	.	.	.
UCK2	7371	broad.mit.edu	36	1	164126070	164126070	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012474	exon2	c.C105A	p.S35S	.	.	.
DUSP27	92235	broad.mit.edu	36	1	165361977	165361977	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080426	exon5	c.C985A	p.L329M	.	.	.
GPR161	23432	broad.mit.edu	36	1	166323557	166323557	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153832	exon7	c.T1214C	p.M405T	.	.	.
F5	2153	broad.mit.edu	36	1	167750209	167750209	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000130	exon25	c.T6641C	p.L2214P	.	.	.
C1orf112	55732	broad.mit.edu	36	1	168065047	168065047	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018186	exon13	c.G1147A	p.V383I	.	.	.
SCYL3	57147	broad.mit.edu	36	1	168098505	168098505	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181093	exon10	c.T1013C	p.V338A	.	.	.
C1orf129	80133	broad.mit.edu	36	1	169231210	169231210	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025063	exon13	c.C1251T	p.A417A	.	.	.
BAT2L2	23215	broad.mit.edu	36	1	169815150	169815150	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015172	exon27	c.A7187C	p.H2396P	.	.	.
METTL13	51603	broad.mit.edu	36	1	170019667	170019667	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014955	exon2	c.G60A	p.T20T	.	.	.
PADI3	51702	broad.mit.edu	36	1	17458773	17458773	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016233	exon2	c.G206A	p.R69H	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	174792086	174792086	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020318	exon2	c.T5G	p.M2R	.	.	.
ASTN1	460	broad.mit.edu	36	1	175170041	175170041	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004319	exon16	c.G2541A	p.A847A	.	.	.
ASTN1	460	broad.mit.edu	36	1	175268569	175268569	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004319	exon3	c.G511A	p.V171M	.	.	.
FAM5B	57795	broad.mit.edu	36	1	175493071	175493071	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021165	exon4	c.C597T	p.A199A	.	.	.
QSOX1	5768	broad.mit.edu	36	1	178432125	178432125	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002826	exon12	c.A1574G	p.E525G	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179969411	179969411	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000721	exon21	c.G3164A	p.C1055Y	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184281446	184281446	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031935	exon41	c.C6308T	p.P2103L	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184414214	184414214	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031935	exon104	c.G15987A	p.Q5329Q	.	.	.
KLHDC7A	127707	broad.mit.edu	36	1	18682083	18682083	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152375	exon1	c.C2021T	p.A674V	.	.	.
CFH	3075	broad.mit.edu	36	1	194979365	194979365	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000186	exon20	c.A3294G	p.E1098E	.	.	.
CRB1	23418	broad.mit.edu	36	1	195564551	195564551	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201253	exon2	c.C447T	p.H149H	.	.	.
CAPZB	832	broad.mit.edu	36	1	19556628	19556628	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004930	exon5	c.G346A	p.V116I	.	.	.
TNNI1	7135	broad.mit.edu	36	1	199647235	199647235	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003281	exon6	c.G329A	p.R110H	.	.	.
LMOD1	25802	broad.mit.edu	36	1	200135269	200135269	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012134	exon2	c.C1495T	p.P499S	.	.	.
PPFIA4	8497	broad.mit.edu	36	1	201292193	201292193	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015053	exon5	c.C656T	p.S219F	.	.	.
ADORA1	134	broad.mit.edu	36	1	201401234	201401234	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001048230	exon3	c.G564T	p.W188C	.	.	.
PRELP	5549	broad.mit.edu	36	1	201719368	201719368	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002725	exon2	c.G433A	p.V145M	.	.	.
PLEKHA6	22874	broad.mit.edu	36	1	202464842	202464842	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014935	exon19	c.G2597A	p.R866H	.	.	.
CNTN2	6900	broad.mit.edu	36	1	203300418	203300418	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005076	exon12	c.G1436A	p.S479N	.	.	.
PM20D1	148811	broad.mit.edu	36	1	204085717	204085717	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152491	exon1	c.C107T	p.A36V	.	.	.
C1orf116	79098	broad.mit.edu	36	1	205263105	205263105	+	Silent	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023938	exon4	c.A627C	p.P209P	.	.	.
CD55	1604	broad.mit.edu	36	1	205566754	205566754	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000574	exon5	c.C613T	p.L205F	.	.	.
LOC642587	642587	broad.mit.edu	36	1	207672217	207672217	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001104548	exon4	c.A209G	p.E70G	.	.	.
TRAF3IP3	80342	broad.mit.edu	36	1	208000080	208000080	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025228	exon3	c.C73T	p.R25C	.	.	.
DTL	51514	broad.mit.edu	36	1	210340368	210340368	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016448	exon14	c.C1413A	p.T471T	.	.	.
FAM71A	149647	broad.mit.edu	36	1	210866091	210866091	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153606	exon1	c.G1249A	p.A417T	.	.	.
CENPF	1063	broad.mit.edu	36	1	212860674	212860674	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016343	exon6	c.G627A	p.R209R	.	.	.
USH2A	7399	broad.mit.edu	36	1	213915445	213915445	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206933	exon63	c.C12431G	p.A4144G	.	.	.
RRP15	51018	broad.mit.edu	36	1	216570948	216570948	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016052	exon5	c.G741A	p.T247T	.	.	.
NBPF3	84224	broad.mit.edu	36	1	21682331	21682331	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032264	exon15	c.G1767A	p.Q589Q	.	.	.
HLX	3142	broad.mit.edu	36	1	219120122	219120122	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021958	exon1	c.G300A	p.A100A	.	.	.
TP53BP2	7159	broad.mit.edu	36	1	222050665	222050665	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031685	exon13	c.C2199T	p.N733N	.	.	.
PARP1	142	broad.mit.edu	36	1	224643052	224643052	+	Silent	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001618	exon5	c.A645C	p.G215G	.	.	.
C1orf95	375057	broad.mit.edu	36	1	224851206	224851206	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001003665	exon2	c.C283T	p.L95L	.	.	.
ITPKB	3707	broad.mit.edu	36	1	224991402	224991402	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002221	exon2	c.C381T	p.A127A	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226534558	226534558	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052843	exon29	c.C7719T	p.G2573G	.	.	.
EPHA8	2046	broad.mit.edu	36	1	22768412	22768412	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020526	exon2	c.G138A	p.W46X	.	.	.
AGT	183	broad.mit.edu	36	1	228913127	228913127	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000029	exon2	c.T93C	p.A31A	.	.	.
DISC1	27185	broad.mit.edu	36	1	230228901	230228901	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164540	exon10	c.G2039T	p.S680I	.	.	.
KIAA1383	54627	broad.mit.edu	36	1	231007851	231007851	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019090	exon1	c.G459A	p.S153S	.	.	.
KIAA1804	84451	broad.mit.edu	36	1	231564502	231564502	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032435	exon5	c.G1392T	p.E464D	.	.	.
LGALS8	3964	broad.mit.edu	36	1	234773540	234773540	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201544	exon8	c.G607A	p.V203I	.	.	.
HNRNPR	10236	broad.mit.edu	36	1	23510080	23510080	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102399	exon10	c.T1062C	p.G354G	.	.	.
RYR2	6262	broad.mit.edu	36	1	235778404	235778404	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001035	exon26	c.T2957A	p.I986N	.	.	.
FMN2	56776	broad.mit.edu	36	1	238437690	238437690	+	Silent	SNP	C	T	T	rs71646887	unknown	TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020066	exon5	c.C2955T	p.G985G	.	.	.
EXO1	9156	broad.mit.edu	36	1	240119430	240119430	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130398	exon16	c.C2446A	p.P816T	.	.	.
OR1C1	26188	broad.mit.edu	36	1	245987951	245987951	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012353	exon1	c.C381T	p.C127C	.	.	.
OR2L13	284521	broad.mit.edu	36	1	246329317	246329317	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175911	exon3	c.A17G	p.H6R	.	.	.
OR2M5	127059	broad.mit.edu	36	1	246375586	246375586	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004690	exon1	c.C514T	p.R172W	.	.	.
OR2M4	26245	broad.mit.edu	36	1	246469221	246469221	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017504	exon1	c.A368G	p.Y123C	.	.	.
OR2T11	127077	broad.mit.edu	36	1	246856285	246856285	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001964	exon1	c.C768T	p.Y256Y	.	.	.
SRRM1	10250	broad.mit.edu	36	1	24868428	24868428	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005839	exon14	c.T1967C	p.L656S	.	.	.
RHCE	6006	broad.mit.edu	36	1	25584921	25584921	+	Missense_Mutation	SNP	A	C	C	rs1132768	unknown	TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138617	exon5	c.T626G	p.V209G	.	.	.
ARID1A	8289	broad.mit.edu	36	1	26930325	26930325	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006015	exon3	c.G1446A	p.Q482Q	.	.	.
FAM46B	115572	broad.mit.edu	36	1	27211501	27211501	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052943	exon1	c.C248T	p.P83L	.	.	.
SYTL1	84958	broad.mit.edu	36	1	27549507	27549507	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032872	exon10	c.C913T	p.R305C	.	.	.
FGR	2268	broad.mit.edu	36	1	27822982	27822982	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042747	exon3	c.G33A	p.P11P	.	.	.
SESN2	83667	broad.mit.edu	36	1	28470892	28470892	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031459	exon3	c.T277C	p.F93L	.	.	.
ACTRT2	140625	broad.mit.edu	36	1	2928339	2928339	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080431	exon1	c.C229T	p.R77C	.	.	.
PRDM16	63976	broad.mit.edu	36	1	3318340	3318340	+	Silent	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022114	exon9	c.G1719T	p.A573A	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33861598	33861598	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052896	exon36	c.A5561G	p.D1854G	.	.	.
MEGF6	1953	broad.mit.edu	36	1	3501843	3501843	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001409	exon3	c.G295C	p.V99L	.	.	.
WDR8	49856	broad.mit.edu	36	1	3545242	3545242	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017818	exon4	c.G344A	p.R115Q	.	.	.
OSCP1	127700	broad.mit.edu	36	1	36677026	36677026	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206837	exon2	c.A185G	p.Y62C	.	.	.
PPIE	10450	broad.mit.edu	36	1	39982125	39982125	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195007	exon6	c.C326T	p.T109M	.	.	.
CAP1	10487	broad.mit.edu	36	1	40302558	40302558	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006367	exon5	c.C367A	p.R123R	.	.	.
RLF	6018	broad.mit.edu	36	1	40433969	40433969	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012421	exon4	c.A553G	p.K185E	.	.	.
HIVEP3	59269	broad.mit.edu	36	1	41821047	41821047	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024503	exon4	c.A2009G	p.Q670R	.	.	.
GUCA2B	2981	broad.mit.edu	36	1	42393088	42393088	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007102	exon2	c.G241A	p.A81T	.	.	.
ERMAP	114625	broad.mit.edu	36	1	43080957	43080957	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017922	exon12	c.G895A	p.V299M	.	.	.
PTPRF	5792	broad.mit.edu	36	1	43842250	43842250	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130440	exon15	c.G2813A	p.R938H	.	.	.
ST3GAL3	6487	broad.mit.edu	36	1	44136538	44136538	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174964	exon7	c.C487T	p.L163L	.	.	.
LRRC41	10489	broad.mit.edu	36	1	46523759	46523759	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006369	exon4	c.C1357T	p.L453L	.	.	.
ATPAF1	64756	broad.mit.edu	36	1	46874105	46874105	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022745	exon9	c.T917C	p.V306A	.	.	.
FAF1	11124	broad.mit.edu	36	1	50821965	50821965	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007051	exon11	c.C978T	p.N326N	.	.	.
ORC1	4998	broad.mit.edu	36	1	52622896	52622896	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190818	exon11	c.G1669T	p.A557S	.	.	.
ECHDC2	55268	broad.mit.edu	36	1	53150014	53150014	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198962	exon2	c.G158A	p.R53H	.	.	.
LRP8	7804	broad.mit.edu	36	1	53509569	53509569	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017522	exon6	c.A657G	p.S219S	.	.	.
C8A	731	broad.mit.edu	36	1	57155941	57155941	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000562	exon11	c.G1719A	p.S573S	.	.	.
CHD5	26038	broad.mit.edu	36	1	6124810	6124810	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015557	exon15	c.G2401A	p.A801T	.	.	.
DOCK7	85440	broad.mit.edu	36	1	62751836	62751836	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033407	exon32	c.C4056T	p.S1352S	.	.	.
DOCK7	85440	broad.mit.edu	36	1	62781960	62781960	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033407	exon23	c.G2811A	p.T937T	.	.	.
DNAJC11	55735	broad.mit.edu	36	1	6627240	6627240	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018198	exon10	c.C1062T	p.S354S	.	.	.
MIER1	57708	broad.mit.edu	36	1	67164462	67164462	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077700	exon2	c.G117A	p.W39X	.	.	.
WLS	79971	broad.mit.edu	36	1	68336921	68336921	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002292	exon12	c.C1614T	p.N538N	.	.	.
RPE65	6121	broad.mit.edu	36	1	68669778	68669778	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000329	exon11	c.C1207T	p.L403L	.	.	.
NEGR1	257194	broad.mit.edu	36	1	71831103	71831103	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173808	exon6	c.A925C	p.S309R	.	.	.
TNNI3K	51086	broad.mit.edu	36	1	74569750	74569750	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199327	exon8	c.C776T	p.A259V	.	.	.
FUBP1	8880	broad.mit.edu	36	1	78198637	78198637	+	Silent	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003902	exon15	c.A1476T	p.G492G	.	.	.
SLC45A1	50651	broad.mit.edu	36	1	8326525	8326525	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080397	exon8	c.T2112C	p.S704S	.	.	.
MCOLN2	255231	broad.mit.edu	36	1	85179155	85179155	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153259	exon8	c.C955T	p.R319W	.	.	.
C1orf52	148423	broad.mit.edu	36	1	85496817	85496817	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198077	exon2	c.A453G	p.E151E	.	.	.
COL24A1	255631	broad.mit.edu	36	1	86021821	86021821	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152890	exon51	c.A4230C	p.E1410D	.	.	.
CLCA2	9635	broad.mit.edu	36	1	86693617	86693617	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006536	exon14	c.C2651T	p.A884V	.	.	.
PKN2	5586	broad.mit.edu	36	1	89071638	89071638	+	Silent	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006256	exon22	c.T2874G	p.T958T	.	.	.
CA6	765	broad.mit.edu	36	1	8931972	8931972	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001215	exon2	c.C143T	p.S48L	.	.	.
GBP2	2634	broad.mit.edu	36	1	89352374	89352374	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004120	exon7	c.G1062A	p.L354L	.	.	.
LRRC8C	84230	broad.mit.edu	36	1	89951626	89951626	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032270	exon3	c.T909C	p.Y303Y	.	.	.
BARHL2	343472	broad.mit.edu	36	1	90950688	90950688	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020063	exon3	c.T933C	p.F311F	.	.	.
ZNF644	84146	broad.mit.edu	36	1	91178527	91178527	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201269	exon3	c.C972T	p.D324D	.	.	.
RPAP2	79871	broad.mit.edu	36	1	92574557	92574557	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024813	exon10	c.T1604C	p.L535P	.	.	.
ARHGAP29	9411	broad.mit.edu	36	1	94427431	94427431	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004815	exon14	c.A1505T	p.D502V	.	.	.
PTBP2	58155	broad.mit.edu	36	1	97051047	97051047	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021190	exon12	c.G1363A	p.A455T	.	.	.
CLSTN1	22883	broad.mit.edu	36	1	9716146	9716146	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014944	exon15	c.G2297T	p.R766L	.	.	.
LPPR4	9890	broad.mit.edu	36	1	99544756	99544756	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014839	exon7	c.C1894T	p.P632S	.	.	.
LPPR4	9890	broad.mit.edu	36	1	99544974	99544974	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014839	exon7	c.C2112T	p.R704R	.	.	.
GSTM3	2947	broad.mit.edu	36	1	110081802	110081802	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000849	exon7	c.467delA	p.K156fs	.	.	.
RPRD2	23248	broad.mit.edu	36	1	148685374	148685374	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015203	exon7	c.743delC	p.S248fs	.	.	.
PIP5K1A	8394	broad.mit.edu	36	1	149473538	149473538	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135636	exon7	c.845delT	p.L282fs	.	.	.
PCP4L1	654790	broad.mit.edu	36	1	159520778	159520780	+	In_Frame_Del	DEL	GGA	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102566	exon3	c.90_92del	p.30_31del	.	.	.
SPEN	23013	broad.mit.edu	36	1	16132067	16132067	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015001	exon11	c.6745delC	p.P2249fs	.	.	.
POGK	57645	broad.mit.edu	36	1	165085123	165085123	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017542	exon5	c.683delA	p.E228fs	.	.	.
CD247	919	broad.mit.edu	36	1	165675238	165675238	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198053	exon3	c.186delC	p.P62fs	.	.	.
PQLC2	54896	broad.mit.edu	36	1	19525431	19525431	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017765	exon6	c.488delG	p.R163fs	.	.	.
UBE2T	29089	broad.mit.edu	36	1	200571447	200571447	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014176	exon2	c.59delC	p.P20fs	.	.	.
CR1	1378	broad.mit.edu	36	1	205763596	205763596	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000651	exon5	c.505delC	p.P169fs	.	.	.
DTL	51514	broad.mit.edu	36	1	210320609	210320609	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016448	exon13	c.1155delA	p.L385fs	.	.	.
FLVCR1	28982	broad.mit.edu	36	1	211112747	211112747	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014053	exon3	c.988delA	p.K330fs	.	.	.
HSPG2	3339	broad.mit.edu	36	1	22040359	22040359	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005529	exon71	c.9335delC	p.P3112fs	.	.	.
CAPN2	824	broad.mit.edu	36	1	222024233	222024236	+	Splice_Site	DEL	AAGT	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001748	exon17	c.1823_1824del	p.608_608del	.	.	.
WNT9A	7483	broad.mit.edu	36	1	226178577	226178577	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003395	exon3	c.500delG	p.G167fs	.	.	.
C1orf124	83932	broad.mit.edu	36	1	229555507	229555507	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032018	exon5	c.1247delT	p.V416fs	.	.	.
CHML	1122	broad.mit.edu	36	1	239864702	239864702	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001821	exon1	c.990delA	p.K330fs	.	.	.
FAF1	11124	broad.mit.edu	36	1	51026370	51026370	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007051	exon4	c.257delC	p.P86fs	.	.	.
LRRIQ3	127255	broad.mit.edu	36	1	74280069	74280069	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105659	exon7	c.1134delT	p.F378fs	.	.	.
TTLL7	79739	broad.mit.edu	36	1	84155898	84155898	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024686	exon14	c.1564delA	p.T522fs	.	.	.
ODF2L	57489	broad.mit.edu	36	1	86587082	86587082	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184766	exon16	c.1715delA	p.N572fs	.	.	.
MMP1	4312	broad.mit.edu	36	11	102167392	102167392	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145938	exon8	c.T880C	p.Y294H	.	.	.
KBTBD3	143879	broad.mit.edu	36	11	105429143	105429143	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152433	exon3	c.C1483A	p.Q495K	.	.	.
ACAT1	38	broad.mit.edu	36	11	107522275	107522275	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000019	exon11	c.T1142C	p.V381A	.	.	.
ZC3H12C	85463	broad.mit.edu	36	11	109541629	109541629	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033390	exon6	c.T2609G	p.L870R	.	.	.
ARHGAP20	57569	broad.mit.edu	36	11	109959658	109959658	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020809	exon14	c.C1429G	p.L477V	.	.	.
HTR3B	9177	broad.mit.edu	36	11	113318923	113318923	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006028	exon7	c.C706T	p.R236C	.	.	.
PCSK7	9159	broad.mit.edu	36	11	116605415	116605415	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004716	exon3	c.C356T	p.A119V	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116897282	116897282	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020693	exon6	c.G1166A	p.G389D	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116900917	116900917	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020693	exon5	c.G930A	p.S310S	.	.	.
CD3G	917	broad.mit.edu	36	11	117727577	117727577	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000073	exon5	c.C464T	p.P155L	.	.	.
UBE4A	9354	broad.mit.edu	36	11	117751149	117751149	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004788	exon9	c.T1466C	p.M489T	.	.	.
MLL	4297	broad.mit.edu	36	11	117897895	117897895	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005933	exon36	c.G11708A	p.R3903H	.	.	.
FOXR1	283150	broad.mit.edu	36	11	118356434	118356434	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181721	exon5	c.G636A	p.T212T	.	.	.
TRAPPC4	51399	broad.mit.edu	36	11	118394864	118394864	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016146	exon1	c.C149T	p.A50V	.	.	.
HYOU1	10525	broad.mit.edu	36	11	118427833	118427833	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006389	exon12	c.G1246A	p.A416T	.	.	.
VPS11	55823	broad.mit.edu	36	11	118454757	118454757	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021729	exon13	c.C2105A	p.T702N	.	.	.
NLRX1	79671	broad.mit.edu	36	11	118559810	118559810	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170722	exon10	c.C2677T	p.P893S	.	.	.
ARHGEF12	23365	broad.mit.edu	36	11	119797765	119797765	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198665	exon5	c.C285T	p.I95I	.	.	.
TECTA	7007	broad.mit.edu	36	11	120505633	120505633	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005422	exon9	c.C2444T	p.T815M	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1225172	1225172	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002458	exon31	c.G10486A	p.A3496T	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1226200	1226200	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002458	exon31	c.C11514T	p.T3838T	.	.	.
ZNF202	7753	broad.mit.edu	36	11	123105726	123105726	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003455	exon5	c.C420T	p.H140H	.	.	.
OR4D5	219875	broad.mit.edu	36	11	123315543	123315543	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001965	exon1	c.G10T	p.A4S	.	.	.
VWA5A	4013	broad.mit.edu	36	11	123517653	123517653	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014622	exon15	c.G2018A	p.S673N	.	.	.
OR8B4	283162	broad.mit.edu	36	11	123799305	123799305	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005196	exon1	c.C673A	p.L225I	.	.	.
STT3A	3703	broad.mit.edu	36	11	124987797	124987797	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152713	exon12	c.G1310A	p.R437H	.	.	.
TIRAP	114609	broad.mit.edu	36	11	125668210	125668210	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148910	exon5	c.T696C	p.S232S	.	.	.
ST14	6768	broad.mit.edu	36	11	129573673	129573673	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021978	exon14	c.G1631A	p.C544Y	.	.	.
VPS26B	112936	broad.mit.edu	36	11	133610045	133610045	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052875	exon2	c.G268A	p.V90M	.	.	.
GLB1L2	89944	broad.mit.edu	36	11	133734194	133734194	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138342	exon7	c.C682A	p.L228I	.	.	.
CALCA	796	broad.mit.edu	36	11	14947067	14947067	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001741	exon4	c.G280T	p.G94C	.	.	.
ABCC8	6833	broad.mit.edu	36	11	17385569	17385569	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000352	exon24	c.T2828A	p.V943D	.	.	.
SERGEF	26297	broad.mit.edu	36	11	17973967	17973967	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012139	exon6	c.C574A	p.Q192K	.	.	.
E2F8	79733	broad.mit.edu	36	11	19212942	19212942	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024680	exon5	c.A691G	p.I231V	.	.	.
SLC6A5	9152	broad.mit.edu	36	11	20615352	20615352	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004211	exon12	c.G1796A	p.R599H	.	.	.
FANCF	2188	broad.mit.edu	36	11	22603126	22603126	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022725	exon1	c.G807A	p.A269A	.	.	.
LGR4	55366	broad.mit.edu	36	11	27346509	27346509	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018490	exon18	c.C2337T	p.P779P	.	.	.
KIF18A	81930	broad.mit.edu	36	11	28055257	28055257	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031217	exon10	c.G1298A	p.R433Q	.	.	.
MPPED2	744	broad.mit.edu	36	11	30514262	30514262	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001584	exon2	c.G165A	p.A55A	.	.	.
IFITM3	10410	broad.mit.edu	36	11	310793	310793	+	Silent	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021034	exon1	c.C21A	p.T7T	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33636988	33636988	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012194	exon18	c.C5084T	p.T1695M	.	.	.
FBXO3	26273	broad.mit.edu	36	11	33720040	33720040	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012175	exon11	c.G1406A	p.R469H	.	.	.
TRAF6	7189	broad.mit.edu	36	11	36475383	36475383	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145803	exon5	c.G457T	p.A153S	.	.	.
NUP98	4928	broad.mit.edu	36	11	3673283	3673283	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139132	exon26	c.G4139A	p.R1380H	.	.	.
LRRC4C	57689	broad.mit.edu	36	11	40094236	40094236	+	Silent	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020929	exon2	c.T183A	p.I61I	.	.	.
API5	8539	broad.mit.edu	36	11	43301724	43301724	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142930	exon6	c.C712T	p.L238F	.	.	.
OR52K2	119774	broad.mit.edu	36	11	4427800	4427800	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005172	exon1	c.T655A	p.S219T	.	.	.
PRDM11	56981	broad.mit.edu	36	11	45161163	45161163	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020229	exon5	c.C501T	p.N167N	.	.	.
CHST1	8534	broad.mit.edu	36	11	45628591	45628591	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003654	exon4	c.C459T	p.R153R	.	.	.
TRIM68	55128	broad.mit.edu	36	11	4583013	4583013	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018073	exon2	c.C298T	p.R100C	.	.	.
PHF21A	51317	broad.mit.edu	36	11	45943507	45943507	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001101802	exon9	c.A928G	p.T310A	.	.	.
ACP2	53	broad.mit.edu	36	11	47220999	47220999	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001610	exon10	c.G989A	p.R330Q	.	.	.
MADD	8567	broad.mit.edu	36	11	47304884	47304884	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003682	exon34	c.A4742G	p.H1581R	.	.	.
NUP160	23279	broad.mit.edu	36	11	47818086	47818086	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015231	exon4	c.T633C	p.S211S	.	.	.
OR4C46	119749	broad.mit.edu	36	11	51371988	51371988	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004703	exon1	c.T131G	p.V44G	.	.	.
OR51I2	390064	broad.mit.edu	36	11	5431353	5431353	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004754	exon1	c.T59G	p.L20R	.	.	.
OR4C11	219429	broad.mit.edu	36	11	55128106	55128106	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004700	exon1	c.G320A	p.C107Y	.	.	.
OR5D14	219436	broad.mit.edu	36	11	55320011	55320011	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004735	exon1	c.C404A	p.T135K	.	.	.
P2RX3	5024	broad.mit.edu	36	11	56892099	56892099	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002559	exon9	c.C883T	p.R295C	.	.	.
OR5B21	219968	broad.mit.edu	36	11	58031787	58031787	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005218	exon1	c.C368T	p.A123V	.	.	.
DTX4	23220	broad.mit.edu	36	11	58716154	58716154	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015177	exon6	c.C1229T	p.T410I	.	.	.
OR10V1	390201	broad.mit.edu	36	11	59237313	59237313	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005324	exon1	c.C582T	p.R194R	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62044361	62044361	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001620	exon5	c.G14104A	p.A4702T	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62051245	62051245	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001620	exon5	c.A7220G	p.D2407G	.	.	.
EML3	256364	broad.mit.edu	36	11	62129194	62129194	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153265	exon16	c.G1949T	p.G650V	.	.	.
B3GAT3	26229	broad.mit.edu	36	11	62140764	62140764	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012200	exon4	c.C699T	p.D233D	.	.	.
BSCL2	26580	broad.mit.edu	36	11	62226557	62226557	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130702	exon4	c.C445T	p.P149S	.	.	.
ZBTB3	79842	broad.mit.edu	36	11	62277334	62277334	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024784	exon2	c.G529A	p.A177T	.	.	.
CHRM1	1128	broad.mit.edu	36	11	62434000	62434000	+	Silent	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000738	exon2	c.C1149A	p.I383I	.	.	.
PRKCDBP	112464	broad.mit.edu	36	11	6297190	6297190	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145040	exon2	c.C565A	p.L189I	.	.	.
APBB1	322	broad.mit.edu	36	11	6379907	6379907	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164	exon8	c.G1363A	p.V455I	.	.	.
ESRRA	2101	broad.mit.edu	36	11	63839208	63839208	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004451	exon6	c.G902A	p.G301D	.	.	.
SLC22A11	55867	broad.mit.edu	36	11	64092785	64092785	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018484	exon8	c.C1341A	p.C447X	.	.	.
TRIM3	10612	broad.mit.edu	36	11	6436045	6436045	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006458	exon4	c.G189A	p.R63R	.	.	.
ZFPL1	7542	broad.mit.edu	36	11	64612154	64612154	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006782	exon8	c.C925A	p.P309T	.	.	.
SIPA1	6494	broad.mit.edu	36	11	65173827	65173827	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006747	exon12	c.C2661T	p.G887G	.	.	.
KLC2	64837	broad.mit.edu	36	11	65788225	65788225	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134775	exon8	c.G1075A	p.G359R	.	.	.
B3GNT1	11041	broad.mit.edu	36	11	65870281	65870281	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006876	exon2	c.G1063A	p.E355K	.	.	.
NPAS4	266743	broad.mit.edu	36	11	65947887	65947887	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178864	exon7	c.T950C	p.M317T	.	.	.
PC	5091	broad.mit.edu	36	11	66374158	66374158	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040716	exon20	c.G2724A	p.T908T	.	.	.
KDM2A	22992	broad.mit.edu	36	11	66731659	66731659	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012308	exon6	c.G410A	p.R137Q	.	.	.
RPS6KB2	6199	broad.mit.edu	36	11	66957054	66957054	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003952	exon8	c.C672T	p.A224A	.	.	.
NDUFV1	4723	broad.mit.edu	36	11	67135965	67135965	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166102	exon8	c.G1075A	p.A359T	.	.	.
ALDH3B1	221	broad.mit.edu	36	11	67545689	67545689	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001030010	exon6	c.G611A	p.G204D	.	.	.
TPCN2	219931	broad.mit.edu	36	11	68610640	68610640	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139075	exon23	c.A2077G	p.I693V	.	.	.
OR2D3	120775	broad.mit.edu	36	11	6899415	6899415	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004684	exon1	c.C607A	p.L203M	.	.	.
FOLR3	2352	broad.mit.edu	36	11	71528404	71528404	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000804	exon5	c.G617A	p.R206Q	.	.	.
UCP3	7352	broad.mit.edu	36	11	73393218	73393218	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022803	exon5	c.A602G	p.D201G	.	.	.
POLD3	10714	broad.mit.edu	36	11	74008723	74008723	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006591	exon7	c.G674A	p.G225D	.	.	.
OR2AT4	341152	broad.mit.edu	36	11	74477695	74477695	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005285	exon1	c.G712T	p.G238X	.	.	.
RPS3	6188	broad.mit.edu	36	11	74790382	74790382	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005	exon3	c.C212A	p.A71D	.	.	.
SERPINH1	871	broad.mit.edu	36	11	74957732	74957732	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001235	exon4	c.C822T	p.H274H	.	.	.
C11orf30	56946	broad.mit.edu	36	11	75926549	75926549	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020193	exon16	c.C2422T	p.P808S	.	.	.
INTS4	92105	broad.mit.edu	36	11	77280104	77280104	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033547	exon21	c.C2501A	p.P834H	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78047287	78047287	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098816	exon34	c.C7774T	p.R2592X	.	.	.
DLG2	1740	broad.mit.edu	36	11	83319091	83319091	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001364	exon10	c.A1109G	p.D370G	.	.	.
TMEM126B	55863	broad.mit.edu	36	11	85024792	85024792	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193537	exon6	c.G504A	p.T168T	.	.	.
CTSC	1075	broad.mit.edu	36	11	87685274	87685274	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001814	exon3	c.G415A	p.G139R	.	.	.
MMP10	4319	broad.mit.edu	36	11	102154676	102154677	+	Frame_Shift_Del	DEL	AA	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002425	exon4	c.510_511del	p.170_171del	.	.	.
LAYN	143903	broad.mit.edu	36	11	110931201	110931201	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178834	exon5	c.634delA	p.K212fs	.	.	.
C11orf57	55216	broad.mit.edu	36	11	111458670	111458670	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001082969	exon6	c.646delA	p.K216fs	.	.	.
TMEM25	84866	broad.mit.edu	36	11	117908170	117908170	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144037	exon3	c.166delG	p.G56fs	.	.	.
CCDC15	80071	broad.mit.edu	36	11	124350259	124350259	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025004	exon5	c.574delA	p.K192fs	.	.	.
TMEM218	219854	broad.mit.edu	36	11	124477245	124477245	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080546	exon2	c.103delG	p.A35fs	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29989516	29989516	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002233	exon2	c.1286delG	p.G429fs	.	.	.
QSER1	79832	broad.mit.edu	36	11	32910898	32910898	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001076786	exon4	c.1131delT	p.T377fs	.	.	.
DEPDC7	91614	broad.mit.edu	36	11	33010908	33010908	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139160	exon7	c.1229delT	p.V410fs	.	.	.
OR52M1	119772	broad.mit.edu	36	11	4523183	4523183	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004137	exon1	c.187delT	p.F63fs	.	.	.
LRP4	4038	broad.mit.edu	36	11	46878423	46878425	+	In_Frame_Del	DEL	GTT	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002334	exon3	c.280_282del	p.94_94del	.	.	.
CPSF7	79869	broad.mit.edu	36	11	60940225	60940225	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136040	exon6	c.893delC	p.P298fs	.	.	.
DLG2	1740	broad.mit.edu	36	11	82930392	82930392	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142700	exon12	c.1474delG	p.V492fs	.	.	.
AP2A2	161	broad.mit.edu	36	11	960195	960195	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012305	exon3	c.163delA	p.K55fs	.	.	.
BVES	11149	broad.mit.edu	36	6	105680081	105680081	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007073	exon4	c.A417G	p.P139P	.	.	.
AIM1	202	broad.mit.edu	36	6	107099401	107099401	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001624	exon11	c.G3988A	p.G1330R	.	.	.
TMEM14B	81853	broad.mit.edu	36	6	10864699	10864699	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127711	exon5	c.G205A	p.A69T	.	.	.
SYCP2L	221711	broad.mit.edu	36	6	11015852	11015852	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040274	exon10	c.T768A	p.D256E	.	.	.
WASF1	8936	broad.mit.edu	36	6	110533366	110533366	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024934	exon7	c.A650G	p.D217G	.	.	.
REV3L	5980	broad.mit.edu	36	6	111803606	111803606	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002912	exon13	c.G2645A	p.R882H	.	.	.
TSPYL4	23270	broad.mit.edu	36	6	116681159	116681159	+	Nonsense_Mutation	SNP	G	A	A	rs61736142	unknown	TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021648	exon1	c.C706T	p.R236X	.	.	.
DSE	29940	broad.mit.edu	36	6	116864652	116864652	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080976	exon6	c.C2328T	p.R776R	.	.	.
GPRC6A	222545	broad.mit.edu	36	6	117234369	117234369	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148963	exon3	c.A1192G	p.M398V	.	.	.
ROS1	6098	broad.mit.edu	36	6	117716368	117716368	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002944	exon43	c.T7024C	p.Y2342H	.	.	.
NUS1	116150	broad.mit.edu	36	6	118121924	118121924	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138459	exon3	c.G579A	p.P193P	.	.	.
HSF2	3298	broad.mit.edu	36	6	122782979	122782979	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004506	exon7	c.G594A	p.R198R	.	.	.
TAAR1	134864	broad.mit.edu	36	6	133008688	133008688	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138327	exon1	c.C148T	p.H50Y	.	.	.
SIRT5	23408	broad.mit.edu	36	6	13705186	13705186	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012241	exon7	c.T576C	p.P192P	.	.	.
ECT2L	345930	broad.mit.edu	36	6	139206023	139206023	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077706	exon6	c.T557C	p.L186P	.	.	.
GPR126	57211	broad.mit.edu	36	6	142782817	142782817	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001032394	exon21	c.C3118T	p.R1040C	.	.	.
UTRN	7402	broad.mit.edu	36	6	144654689	144654689	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007124	exon1	c.C32A	p.P11H	.	.	.
LRP11	84918	broad.mit.edu	36	6	150205830	150205830	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032832	exon3	c.G895A	p.A299T	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151714452	151714452	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005100	exon4	c.A3233G	p.E1078G	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152743964	152743964	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033071	exon56	c.G8900A	p.G2967D	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155511149	155511149	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012454	exon6	c.A2017G	p.I673V	.	.	.
TULP4	56995	broad.mit.edu	36	6	158843525	158843525	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020245	exon13	c.G2842A	p.V948I	.	.	.
TMEM181	57583	broad.mit.edu	36	6	158914446	158914446	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020823	exon2	c.G426A	p.A142A	.	.	.
PNLDC1	154197	broad.mit.edu	36	6	160141812	160141812	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173516	exon2	c.C62T	p.T21M	.	.	.
PNLDC1	154197	broad.mit.edu	36	6	160159593	160159593	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173516	exon16	c.G1141A	p.E381K	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160416989	160416989	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000876	exon36	c.G5287A	p.A1763T	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160437465	160437465	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000876	exon45	c.C6660T	p.G2220G	.	.	.
SLC22A3	6581	broad.mit.edu	36	6	160749912	160749912	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021977	exon4	c.C826T	p.L276L	.	.	.
MYLIP	29116	broad.mit.edu	36	6	16252065	16252065	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013262	exon5	c.A819G	p.A273A	.	.	.
T	6862	broad.mit.edu	36	6	166492030	166492030	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003181	exon9	c.C1071T	p.A357A	.	.	.
T	6862	broad.mit.edu	36	6	166496049	166496049	+	Silent	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003181	exon7	c.T780G	p.P260P	.	.	.
UNC93A	54346	broad.mit.edu	36	6	167641276	167641276	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143947	exon6	c.C870A	p.S290S	.	.	.
SMOC2	64094	broad.mit.edu	36	6	168795806	168795806	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166412	exon11	c.G1258A	p.G420S	.	.	.
RBM24	221662	broad.mit.edu	36	6	17400104	17400104	+	Silent	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153020	exon3	c.A351T	p.A117A	.	.	.
CDKAL1	54901	broad.mit.edu	36	6	20847791	20847791	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017774	exon6	c.G434A	p.R145H	.	.	.
DCDC2	51473	broad.mit.edu	36	6	24282948	24282948	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195610	exon11	c.G1420A	p.A474T	.	.	.
LRRC16A	55604	broad.mit.edu	36	6	25574119	25574119	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017640	exon9	c.G654A	p.Q218Q	.	.	.
HIST1H1B	3009	broad.mit.edu	36	6	27942651	27942651	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005322	exon1	c.A636G	p.K212K	.	.	.
HIST1H2BO	8348	broad.mit.edu	36	6	27969415	27969415	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003527	exon1	c.T196G	p.F66V	.	.	.
ZNF187	7741	broad.mit.edu	36	6	28352299	28352299	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152736	exon4	c.C482A	p.S161X	.	.	.
OR2H1	26716	broad.mit.edu	36	6	29537777	29537777	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030883	exon3	c.G252T	p.W84C	.	.	.
ZFP57	346171	broad.mit.edu	36	6	29752661	29752661	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001109809	exon1	c.C99A	p.C33X	.	.	.
TRIM31	11074	broad.mit.edu	36	6	30179544	30179544	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007028	exon9	c.C1026T	p.G342G	.	.	.
HLA-E	3133	broad.mit.edu	36	6	30566130	30566130	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005516	exon3	c.G469A	p.V157M	.	.	.
DHX16	8449	broad.mit.edu	36	6	30746644	30746644	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003587	exon3	c.C511T	p.R171C	.	.	.
KIAA1949	170954	broad.mit.edu	36	6	30761407	30761407	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134870	exon2	c.G368A	p.R123K	.	.	.
DDR1	780	broad.mit.edu	36	6	30973920	30973920	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013993	exon17	c.C2308T	p.R770W	.	.	.
HLA-C	3107	broad.mit.edu	36	6	31346088	31346088	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002117	exon4	c.G773T	p.R258M	.	.	.
LTB	4050	broad.mit.edu	36	6	31657605	31657605	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002341	exon2	c.C173T	p.T58M	.	.	.
BAT5	7920	broad.mit.edu	36	6	31777843	31777843	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021160	exon2	c.G176A	p.S59N	.	.	.
C6orf25	80739	broad.mit.edu	36	6	31799143	31799143	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138272	exon1	c.G4A	p.A2T	.	.	.
PSMB9	5698	broad.mit.edu	36	6	32933830	32933830	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002800	exon4	c.C331T	p.R111X	.	.	.
BAK1	578	broad.mit.edu	36	6	33649571	33649571	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001188	exon6	c.T623A	p.F208Y	.	.	.
GRM4	2914	broad.mit.edu	36	6	34103965	34103965	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000841	exon9	c.G2599A	p.A867T	.	.	.
PACSIN1	29993	broad.mit.edu	36	6	34607385	34607385	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020804	exon9	c.C1068T	p.Y356Y	.	.	.
SPDEF	25803	broad.mit.edu	36	6	34620043	34620043	+	Silent	SNP	G	A	A	rs2233638	unknown	TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012391	exon2	c.C168T	p.S56S	.	.	.
UHRF1BP1	54887	broad.mit.edu	36	6	34934745	34934745	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017754	exon14	c.T2634C	p.A878A	.	.	.
TMEM217	221468	broad.mit.edu	36	6	37294613	37294613	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145316	exon2	c.A172T	p.N58Y	.	.	.
FTSJD2	23070	broad.mit.edu	36	6	37549291	37549291	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015050	exon17	c.G1757A	p.R586H	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38948768	38948768	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001371	exon49	c.G6695A	p.R2232H	.	.	.
KIF6	221458	broad.mit.edu	36	6	39419533	39419533	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145027	exon22	c.C2358T	p.T786T	.	.	.
KIF6	221458	broad.mit.edu	36	6	39506884	39506884	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145027	exon14	c.G1677T	p.Q559H	.	.	.
DAAM2	23500	broad.mit.edu	36	6	39977669	39977669	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015345	exon25	c.G3082C	p.A1028P	.	.	.
C6orf146	222826	broad.mit.edu	36	6	4022638	4022638	+	Silent	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173563	exon2	c.A10C	p.R4R	.	.	.
TRERF1	55809	broad.mit.edu	36	6	42312036	42312036	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033502	exon16	c.C2951T	p.P984L	.	.	.
CUL9	23113	broad.mit.edu	36	6	43268829	43268829	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015089	exon9	c.C2293T	p.R765W	.	.	.
CUL9	23113	broad.mit.edu	36	6	43275736	43275736	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015089	exon14	c.T3248C	p.I1083T	.	.	.
CUL9	23113	broad.mit.edu	36	6	43288972	43288972	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015089	exon27	c.G5320A	p.V1774M	.	.	.
TTBK1	84630	broad.mit.edu	36	6	43358774	43358774	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032538	exon14	c.C2318T	p.A773V	.	.	.
TTBK1	84630	broad.mit.edu	36	6	43358905	43358905	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032538	exon14	c.A2449G	p.R817G	.	.	.
POLH	5429	broad.mit.edu	36	6	43689868	43689868	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006502	exon11	c.G1738T	p.G580W	.	.	.
VEGFA	7422	broad.mit.edu	36	6	43857759	43857759	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025369	exon6	c.C1051T	p.R351C	.	.	.
AARS2	57505	broad.mit.edu	36	6	44380815	44380815	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020745	exon11	c.C1533T	p.D511D	.	.	.
ENPP4	22875	broad.mit.edu	36	6	46215291	46215291	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014936	exon2	c.A12G	p.L4L	.	.	.
CYP39A1	51302	broad.mit.edu	36	6	46626111	46626111	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016593	exon12	c.T1361C	p.V454A	.	.	.
TNFRSF21	27242	broad.mit.edu	36	6	47308659	47308659	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014452	exon6	c.G1769A	p.R590H	.	.	.
CD2AP	23607	broad.mit.edu	36	6	47655144	47655144	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012120	exon9	c.A968T	p.N323I	.	.	.
TFAP2D	83741	broad.mit.edu	36	6	50794820	50794820	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172238	exon3	c.G596T	p.R199I	.	.	.
BMP5	653	broad.mit.edu	36	6	55847404	55847404	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021073	exon1	c.A219G	p.Q73Q	.	.	.
DST	667	broad.mit.edu	36	6	56525071	56525071	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015548	exon42	c.G8609A	p.R2870H	.	.	.
DST	667	broad.mit.edu	36	6	56614831	56614831	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015548	exon3	c.C289T	p.Q97X	.	.	.
LMBRD1	55788	broad.mit.edu	36	6	70465730	70465730	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018368	exon13	c.C1264A	p.L422I	.	.	.
COL19A1	1310	broad.mit.edu	36	6	70696236	70696236	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001858	exon6	c.A589C	p.T197P	.	.	.
COL19A1	1310	broad.mit.edu	36	6	70703487	70703487	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001858	exon8	c.G837T	p.Q279H	.	.	.
SSR1	6745	broad.mit.edu	36	6	7246589	7246589	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003144	exon4	c.G496A	p.G166R	.	.	.
KCNQ5	56479	broad.mit.edu	36	6	73961688	73961688	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160133	exon15	c.G2686A	p.G896S	.	.	.
CD109	135228	broad.mit.edu	36	6	74589947	74589947	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133493	exon33	c.C4208T	p.S1403F	.	.	.
DSP	1832	broad.mit.edu	36	6	7513068	7513068	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008844	exon10	c.T1196C	p.I399T	.	.	.
TMEM30A	55754	broad.mit.edu	36	6	76050875	76050875	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018247	exon1	c.G200A	p.G67D	.	.	.
IMPG1	3617	broad.mit.edu	36	6	76801194	76801194	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001563	exon3	c.G332A	p.R111Q	.	.	.
HTR1B	3351	broad.mit.edu	36	6	78229112	78229112	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000863	exon1	c.C728T	p.T243M	.	.	.
BMP6	654	broad.mit.edu	36	6	7825427	7825427	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001718	exon7	c.T1394C	p.V465A	.	.	.
IBTK	25998	broad.mit.edu	36	6	82957563	82957563	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015525	exon25	c.G3521T	p.S1174I	.	.	.
DOPEY1	23033	broad.mit.edu	36	6	83876657	83876657	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015018	exon6	c.C586T	p.R196C	.	.	.
DOPEY1	23033	broad.mit.edu	36	6	83934374	83934374	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015018	exon39	c.C7167T	p.T2389T	.	.	.
CNR1	1268	broad.mit.edu	36	6	88910583	88910583	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160259	exon2	c.C1130T	p.T377M	.	.	.
MDN1	23195	broad.mit.edu	36	6	90467267	90467267	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014611	exon56	c.A8457G	p.Q2819Q	.	.	.
MDN1	23195	broad.mit.edu	36	6	90513865	90513865	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014611	exon27	c.A3808G	p.I1270V	.	.	.
GJA10	84694	broad.mit.edu	36	6	90661055	90661055	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032602	exon1	c.G147A	p.Q49Q	.	.	.
TMEM200A	114801	broad.mit.edu	36	6	130804121	130804121	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052913	exon2	c.861delT	p.A287fs	.	.	.
OR2A4	79541	broad.mit.edu	36	6	132064064	132064064	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030908	exon1	c.171delC	p.P57fs	.	.	.
GRM1	2911	broad.mit.edu	36	6	146797080	146797080	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000838	exon9	c.3040delC	p.P1014fs	.	.	.
DDR1	780	broad.mit.edu	36	6	30972526	30972526	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013993	exon14	c.1774delC	p.P592fs	.	.	.
TAP2	6891	broad.mit.edu	36	6	32906062	32906062	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018833	exon9	c.1595delA	p.K532fs	.	.	.
TAP2	6891	broad.mit.edu	36	6	32913766	32913766	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018833	exon2	c.223delC	p.L75X	.	.	.
GRM4	2914	broad.mit.edu	36	6	34111777	34111777	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000841	exon8	c.2088delC	p.P696fs	.	.	.
ENPP5	59084	broad.mit.edu	36	6	46243288	46243288	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021572	exon2	c.671delA	p.K224fs	.	.	.
SNAP91	9892	broad.mit.edu	36	6	84428805	84428805	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014841	exon4	c.329delT	p.L110fs	.	.	.
GJB7	375519	broad.mit.edu	36	6	88050699	88050699	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198568	exon3	c.651delA	p.K217fs	.	.	.
MDN1	23195	broad.mit.edu	36	6	90472574	90472574	+	Frame_Shift_Del	DEL	A	-	-	rs35107588	unknown	TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014611	exon53	c.8073delT	p.F2691fs	.	.	.
MYH13	8735	broad.mit.edu	36	17	10153303	10153303	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003802	exon35	c.C5142T	p.S1714S	.	.	.
MYH13	8735	broad.mit.edu	36	17	10153730	10153730	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003802	exon34	c.C4799A	p.A1600D	.	.	.
MYH13	8735	broad.mit.edu	36	17	10174562	10174562	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003802	exon21	c.T2302G	p.F768V	.	.	.
MYH2	4620	broad.mit.edu	36	17	10383592	10383592	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100112	exon13	c.C1160T	p.A387V	.	.	.
ZNF18	7566	broad.mit.edu	36	17	11822178	11822178	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144680	exon9	c.C1471A	p.P491T	.	.	.
MAP2K4	6416	broad.mit.edu	36	17	11925466	11925466	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003010	exon3	c.A287T	p.D96V	.	.	.
ELAC2	60528	broad.mit.edu	36	17	12840697	12840697	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165962	exon16	c.T1431C	p.G477G	.	.	.
INPP5K	51763	broad.mit.edu	36	17	1346135	1346135	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016532	exon11	c.G1259A	p.R420H	.	.	.
COX10	1352	broad.mit.edu	36	17	14036159	14036159	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001303	exon6	c.C824T	p.T275I	.	.	.
CDRT1	374286	broad.mit.edu	36	17	15437410	15437410	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006382	exon11	c.G1972A	p.D658N	.	.	.
MYO15A	51168	broad.mit.edu	36	17	17994887	17994887	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016239	exon37	c.A7408G	p.T2470A	.	.	.
MYO15A	51168	broad.mit.edu	36	17	18016206	18016206	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016239	exon63	c.C10227T	p.S3409S	.	.	.
LGALS9	3965	broad.mit.edu	36	17	22998476	22998476	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_009587	exon10	c.G812A	p.R271H	.	.	.
C17orf108	201229	broad.mit.edu	36	17	23231480	23231480	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001076680	exon3	c.A166T	p.I56F	.	.	.
TMEM199	147007	broad.mit.edu	36	17	23711934	23711934	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152464	exon5	c.G468A	p.T156T	.	.	.
FOXN1	8456	broad.mit.edu	36	17	23875730	23875730	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003593	exon2	c.G206A	p.R69H	.	.	.
KIAA0100	9703	broad.mit.edu	36	17	23966243	23966243	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014680	exon39	c.C6674G	p.P2225R	.	.	.
PROCA1	147011	broad.mit.edu	36	17	24055936	24055936	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152465	exon2	c.G144A	p.G48G	.	.	.
PAFAH1B1	5048	broad.mit.edu	36	17	2517082	2517082	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000430	exon5	c.C239T	p.T80M	.	.	.
RAP1GAP2	23108	broad.mit.edu	36	17	2845492	2845492	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015085	exon13	c.C1026A	p.T342T	.	.	.
NLE1	54475	broad.mit.edu	36	17	30487553	30487553	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014445	exon7	c.G29A	p.R10H	.	.	.
RDM1	201299	broad.mit.edu	36	17	31271316	31271316	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163122	exon4	c.C573T	p.H191H	.	.	.
CCL23	6368	broad.mit.edu	36	17	31364957	31364957	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145898	exon3	c.C191T	p.P64L	.	.	.
AATF	26574	broad.mit.edu	36	17	32381691	32381691	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012138	exon2	c.A156G	p.V52V	.	.	.
ACACA	31	broad.mit.edu	36	17	32671588	32671588	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198834	exon24	c.G3038A	p.R1013Q	.	.	.
OR3A3	8392	broad.mit.edu	36	17	3271304	3271304	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012373	exon1	c.A693G	p.V231V	.	.	.
DDX52	11056	broad.mit.edu	36	17	33052525	33052525	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007010	exon14	c.T1667C	p.M556T	.	.	.
MLLT6	4302	broad.mit.edu	36	17	34126517	34126517	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005937	exon10	c.G1408A	p.A470T	.	.	.
TOP2A	7153	broad.mit.edu	36	17	35806157	35806157	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001067	exon28	c.T3624C	p.A1208A	.	.	.
TOP2A	7153	broad.mit.edu	36	17	35809670	35809670	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001067	exon24	c.T3176C	p.I1059T	.	.	.
KRT34	3885	broad.mit.edu	36	17	36787904	36787904	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021013	exon7	c.C1244T	p.A415V	.	.	.
ACLY	47	broad.mit.edu	36	17	37283617	37283617	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198830	exon22	c.T2585C	p.V862A	.	.	.
TTC25	83538	broad.mit.edu	36	17	37370712	37370712	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031421	exon11	c.T1512C	p.S504S	.	.	.
STAT5A	6776	broad.mit.edu	36	17	37711962	37711962	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003152	exon14	c.C1651T	p.L551L	.	.	.
CNTNAP1	8506	broad.mit.edu	36	17	38092539	38092539	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003632	exon7	c.C993T	p.R331R	.	.	.
AOC2	314	broad.mit.edu	36	17	38254725	38254725	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001158	exon2	c.G1685A	p.R562Q	.	.	.
G6PC	2538	broad.mit.edu	36	17	38316887	38316887	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000151	exon5	c.C992T	p.A331V	.	.	.
ZZEF1	23140	broad.mit.edu	36	17	3884092	3884092	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015113	exon40	c.C6550T	p.L2184L	.	.	.
ETV4	2118	broad.mit.edu	36	17	38966828	38966828	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001986	exon6	c.G308A	p.R103H	.	.	.
MPP2	4355	broad.mit.edu	36	17	39315382	39315382	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005374	exon6	c.C477T	p.G159G	.	.	.
UBTF	7343	broad.mit.edu	36	17	39643291	39643291	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001076683	exon13	c.G1325A	p.G442D	.	.	.
GRN	2896	broad.mit.edu	36	17	39784046	39784046	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002087	exon8	c.C824A	p.P275H	.	.	.
ANKFY1	51479	broad.mit.edu	36	17	4035068	4035068	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016376	exon12	c.C1493T	p.A498V	.	.	.
ANKFY1	51479	broad.mit.edu	36	17	4047572	4047572	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020740	exon8	c.C948T	p.N316N	.	.	.
PLCD3	113026	broad.mit.edu	36	17	40546404	40546404	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133373	exon12	c.T1923C	p.P641P	.	.	.
PLEKHM1	9842	broad.mit.edu	36	17	40911070	40911070	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014798	exon3	c.T275C	p.L92P	.	.	.
ITGB3	3690	broad.mit.edu	36	17	42719529	42719529	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000212	exon6	c.T872C	p.I291T	.	.	.
NPEPPS	9520	broad.mit.edu	36	17	43011850	43011850	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006310	exon4	c.C514T	p.R172C	.	.	.
ABI3	51225	broad.mit.edu	36	17	44648943	44648943	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135186	exon2	c.G169A	p.A57T	.	.	.
COL1A1	1277	broad.mit.edu	36	17	45623237	45623237	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000088	exon33	c.C2283T	p.G761G	.	.	.
XYLT2	64132	broad.mit.edu	36	17	45790580	45790580	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022167	exon10	c.G1955T	p.W652L	.	.	.
CACNA1G	8913	broad.mit.edu	36	17	46005180	46005180	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198382	exon6	c.A1013G	p.D338G	.	.	.
CACNA1G	8913	broad.mit.edu	36	17	46050267	46050267	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198382	exon29	c.C5135T	p.T1712M	.	.	.
RNF167	26001	broad.mit.edu	36	17	4788805	4788805	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015528	exon10	c.T802C	p.C268R	.	.	.
CAMTA2	23125	broad.mit.edu	36	17	4816856	4816856	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015099	exon15	c.T2435C	p.L812P	.	.	.
ZFP3	124961	broad.mit.edu	36	17	4935817	4935817	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153018	exon2	c.C294T	p.S98S	.	.	.
EPX	8288	broad.mit.edu	36	17	53629587	53629587	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000502	exon7	c.C1090T	p.R364C	.	.	.
RNF43	54894	broad.mit.edu	36	17	53847690	53847690	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017763	exon2	c.T248C	p.M83T	.	.	.
PPM1E	22843	broad.mit.edu	36	17	54412881	54412881	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014906	exon7	c.T1975A	p.S659T	.	.	.
EFCAB3	146779	broad.mit.edu	36	17	57814126	57814126	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173503	exon2	c.A54G	p.V18V	.	.	.
KCNH6	81033	broad.mit.edu	36	17	58965360	58965360	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030779	exon5	c.G1057A	p.A353T	.	.	.
DCAF7	10238	broad.mit.edu	36	17	59020225	59020225	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005828	exon7	c.G989A	p.R330H	.	.	.
MAP3K3	4215	broad.mit.edu	36	17	59123397	59123397	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002401	exon15	c.G1538A	p.R513H	.	.	.
DDX42	11325	broad.mit.edu	36	17	59246667	59246667	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203499	exon16	c.C1915T	p.R639W	.	.	.
HELZ	9931	broad.mit.edu	36	17	62593136	62593136	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014877	exon15	c.T1815C	p.Y605Y	.	.	.
PRKAR1A	5573	broad.mit.edu	36	17	64035625	64035625	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_212472	exon8	c.T758C	p.V253A	.	.	.
ABCA6	23460	broad.mit.edu	36	17	64636495	64636495	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080284	exon8	c.C979A	p.L327I	.	.	.
SSTR2	6752	broad.mit.edu	36	17	68677882	68677882	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001050	exon2	c.G829A	p.V277I	.	.	.
BCL6B	255877	broad.mit.edu	36	17	6869171	6869171	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181844	exon5	c.A817G	p.T273A	.	.	.
SDK2	54549	broad.mit.edu	36	17	68876211	68876211	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144952	exon37	c.C5097T	p.S1699S	.	.	.
GRIN2C	2905	broad.mit.edu	36	17	70358054	70358054	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000835	exon6	c.C1377T	p.I459I	.	.	.
PHF23	79142	broad.mit.edu	36	17	7080202	7080202	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024297	exon4	c.G768A	p.E256E	.	.	.
KIAA0195	9772	broad.mit.edu	36	17	71000620	71000620	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014738	exon16	c.C1928T	p.A643V	.	.	.
ITGB4	3691	broad.mit.edu	36	17	71235388	71235388	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005731	exon5	c.G326A	p.R109H	.	.	.
CDK3	1018	broad.mit.edu	36	17	71509553	71509553	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001258	exon3	c.G120T	p.E40D	.	.	.
EVPL	2125	broad.mit.edu	36	17	71523208	71523208	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001988	exon15	c.G1807A	p.A603T	.	.	.
PRPSAP1	5635	broad.mit.edu	36	17	71838227	71838227	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002766	exon5	c.A579G	p.E193E	.	.	.
POLR2A	5430	broad.mit.edu	36	17	7356944	7356944	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000937	exon28	c.A4734G	p.S1578S	.	.	.
C1QTNF1	114897	broad.mit.edu	36	17	74555547	74555547	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198593	exon4	c.C628T	p.H210Y	.	.	.
RNF213	57674	broad.mit.edu	36	17	75956501	75956501	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020914	exon45	c.C12265T	p.P4089S	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7610489	7610489	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020877	exon21	c.C3640T	p.Q1214X	.	.	.
C17orf62	79415	broad.mit.edu	36	17	77995736	77995736	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100407	exon7	c.G319A	p.V107I	.	.	.
ALOXE3	59344	broad.mit.edu	36	17	7948230	7948230	+	Silent	SNP	T	C	C	rs34545935	unknown	TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165960	exon14	c.A2109G	p.G703G	.	.	.
ARHGEF15	22899	broad.mit.edu	36	17	8159216	8159216	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173728	exon6	c.C1156A	p.P386T	.	.	.
USP43	124739	broad.mit.edu	36	17	9554027	9554027	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153210	exon13	c.T2041C	p.W681R	.	.	.
TRPV2	51393	broad.mit.edu	36	17	16271560	16271560	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016113	exon8	c.1324delG	p.G442fs	.	.	.
SGSM2	9905	broad.mit.edu	36	17	2229228	2229230	+	In_Frame_Del	DEL	CAT	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098509	exon22	c.2913_2915del	p.971_972del	.	.	.
CORO6	84940	broad.mit.edu	36	17	24972396	24972396	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032854	exon1	c.170delG	p.G57fs	.	.	.
ACCN1	40	broad.mit.edu	36	17	28375130	28375130	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183377	exon6	c.1211delA	p.K404fs	.	.	.
KRT19	3880	broad.mit.edu	36	17	36937846	36937846	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002276	exon1	c.180delC	p.A60fs	.	.	.
PPM1D	8493	broad.mit.edu	36	17	56095406	56095406	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003620	exon6	c.1529delA	p.Q510fs	.	.	.
AXIN2	8313	broad.mit.edu	36	17	60964401	60964402	+	Frame_Shift_Del	DEL	CT	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004655	exon6	c.1214_1215del	p.405_405del	.	.	.
SOX9	6662	broad.mit.edu	36	17	67631689	67631689	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000346	exon3	c.1096delC	p.P366fs	.	.	.
SLC16A5	9121	broad.mit.edu	36	17	70607963	70607963	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004695	exon5	c.610delC	p.P204fs	.	.	.
CNTROB	116840	broad.mit.edu	36	17	7791753	7791753	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053051	exon14	c.2133delT	p.N711fs	.	.	.
CXADR	1525	broad.mit.edu	36	21	17841377	17841377	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001338	exon2	c.C205T	p.Q69X	.	.	.
GABPA	2551	broad.mit.edu	36	21	26058461	26058461	+	Missense_Mutation	SNP	C	T	T	rs2829897	by-cluster,by-frequency,by-submitter,by-hapmap	TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001197297	exon8	c.C872T	p.A291V	.	.	.
ADAMTS1	9510	broad.mit.edu	36	21	27134192	27134192	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006988	exon6	c.C1725T	p.C575C	.	.	.
ADAMTS5	11096	broad.mit.edu	36	21	27226334	27226334	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007038	exon6	c.A1909G	p.N637D	.	.	.
MRAP	56246	broad.mit.edu	36	21	32600905	32600905	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178817	exon4	c.G190A	p.A64T	.	.	.
SYNJ1	8867	broad.mit.edu	36	21	32951078	32951078	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003895	exon21	c.T2702C	p.V901A	.	.	.
SON	6651	broad.mit.edu	36	21	33845433	33845433	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032195	exon3	c.C2026T	p.P676S	.	.	.
SLC5A3	6526	broad.mit.edu	36	21	34389926	34389926	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006933	exon2	c.C559A	p.L187M	.	.	.
RUNX1	861	broad.mit.edu	36	21	35174879	35174879	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001754	exon5	c.T353C	p.V118A	.	.	.
B3GALT5	10317	broad.mit.edu	36	21	39954611	39954611	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033171	exon4	c.G255A	p.M85I	.	.	.
SLC37A1	54020	broad.mit.edu	36	21	42868009	42868009	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018964	exon19	c.G1436C	p.G479A	.	.	.
MCM3AP	8888	broad.mit.edu	36	21	46509806	46509806	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003906	exon12	c.C3091T	p.Q1031X	.	.	.
PCNT	5116	broad.mit.edu	36	21	46676143	46676143	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006031	exon38	c.C8337T	p.C2779C	.	.	.
DIP2A	23181	broad.mit.edu	36	21	46798594	46798594	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146114	exon24	c.C2923T	p.L975L	.	.	.
PRMT2	3275	broad.mit.edu	36	21	46888788	46888788	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001535	exon4	c.C287T	p.T96M	.	.	.
MRAP	56246	broad.mit.edu	36	21	32606143	32606143	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178817	exon5	c.484delC	p.P162fs	.	.	.
IFNAR1	3454	broad.mit.edu	36	21	33629724	33629724	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000629	exon2	c.101delA	p.Q34fs	.	.	.
ATF7IP2	80063	broad.mit.edu	36	16	10473492	10473492	+	Silent	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024997	exon7	c.T1377A	p.I459I	.	.	.
LITAF	9516	broad.mit.edu	36	16	11555027	11555027	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136473	exon3	c.C240T	p.Y80Y	.	.	.
UBE2I	7329	broad.mit.edu	36	16	1304045	1304045	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194259	exon3	c.G13A	p.A5T	.	.	.
BFAR	51283	broad.mit.edu	36	16	14666309	14666309	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016561	exon7	c.T1040A	p.F347Y	.	.	.
IFT140	9742	broad.mit.edu	36	16	1574252	1574252	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014714	exon11	c.C1326T	p.T442T	.	.	.
ABCC1	4363	broad.mit.edu	36	16	16047255	16047255	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019862	exon9	c.G1102A	p.V368M	.	.	.
ABCC1	4363	broad.mit.edu	36	16	16133283	16133283	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019862	exon26	c.G3779T	p.G1260V	.	.	.
NOMO3	408050	broad.mit.edu	36	16	16257510	16257510	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004067	exon11	c.C1214T	p.A405V	.	.	.
XYLT1	64131	broad.mit.edu	36	16	17142625	17142625	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022166	exon7	c.C1473T	p.G491G	.	.	.
RAB26	25837	broad.mit.edu	36	16	2143404	2143404	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014353	exon9	c.C752T	p.A251V	.	.	.
OTOA	146183	broad.mit.edu	36	16	21604127	21604127	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144672	exon6	c.G343A	p.A115T	.	.	.
PLK1	5347	broad.mit.edu	36	16	23608761	23608761	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005030	exon10	c.G1688A	p.R563H	.	.	.
CACNG3	10368	broad.mit.edu	36	16	24273759	24273759	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006539	exon3	c.G400A	p.V134I	.	.	.
GTF3C1	2975	broad.mit.edu	36	16	27411182	27411182	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001520	exon19	c.C3129T	p.C1043C	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2757203	2757203	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016333	exon11	c.G6673A	p.A2225T	.	.	.
SULT1A1	6817	broad.mit.edu	36	16	28527342	28527342	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177529	exon3	c.C232T	p.R78W	.	.	.
ATP2A1	487	broad.mit.edu	36	16	28821017	28821017	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004320	exon17	c.C2333T	p.T778I	.	.	.
RABEP2	79874	broad.mit.edu	36	16	28829964	28829964	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024816	exon6	c.G932A	p.R311H	.	.	.
KCTD13	253980	broad.mit.edu	36	16	29844682	29844682	+	Silent	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178863	exon1	c.C174A	p.T58T	.	.	.
ALDOA	226	broad.mit.edu	36	16	29986385	29986385	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_184041	exon3	c.G226T	p.G76C	.	.	.
CLDN6	9074	broad.mit.edu	36	16	3005880	3005880	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021195	exon2	c.G144T	p.E48D	.	.	.
ZNF205	7755	broad.mit.edu	36	16	3105535	3105535	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042428	exon3	c.G236A	p.G79D	.	.	.
ITGAD	3681	broad.mit.edu	36	16	31336972	31336972	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005353	exon21	c.C2575T	p.R859C	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3718834	3718834	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004380	exon31	c.G6215A	p.R2072Q	.	.	.
DNAJA2	10294	broad.mit.edu	36	16	45548541	45548541	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005880	exon9	c.A1140G	p.R380R	.	.	.
ABCC12	94160	broad.mit.edu	36	16	46706940	46706940	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033226	exon13	c.C1876A	p.L626M	.	.	.
ZNF423	23090	broad.mit.edu	36	16	48230061	48230061	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015069	exon5	c.G503A	p.C168Y	.	.	.
SALL1	6299	broad.mit.edu	36	16	49730428	49730428	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002968	exon2	c.C3206A	p.P1069H	.	.	.
NAGPA	51172	broad.mit.edu	36	16	5015660	5015660	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016256	exon10	c.G1368A	p.A456A	.	.	.
FTO	79068	broad.mit.edu	36	16	52471280	52471280	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080432	exon6	c.T999C	p.Y333Y	.	.	.
IRX5	10265	broad.mit.edu	36	16	53523986	53523986	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005853	exon2	c.T325C	p.Y109H	.	.	.
CES1	1066	broad.mit.edu	36	16	54411797	54411797	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001266	exon6	c.G786C	p.K262N	.	.	.
GNAO1	2775	broad.mit.edu	36	16	54920151	54920151	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138736	exon4	c.C411T	p.I137I	.	.	.
CETP	1071	broad.mit.edu	36	16	55572583	55572583	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000078	exon12	c.A1159G	p.T387A	.	.	.
NLRC5	84166	broad.mit.edu	36	16	55618171	55618171	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032206	exon6	c.C1815T	p.R605R	.	.	.
CCDC135	84229	broad.mit.edu	36	16	56289557	56289557	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032269	exon2	c.G195A	p.A65A	.	.	.
ZNF319	57567	broad.mit.edu	36	16	56588829	56588829	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020807	exon2	c.C842T	p.S281L	.	.	.
MMP15	4324	broad.mit.edu	36	16	56631503	56631503	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002428	exon4	c.G664A	p.A222T	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57134923	57134923	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206999	exon31	c.C4523T	p.A1508V	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57170237	57170237	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206999	exon13	c.T1451G	p.L484R	.	.	.
GOT2	2806	broad.mit.edu	36	16	57308202	57308202	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002080	exon7	c.C719T	p.A240V	.	.	.
CDH8	1006	broad.mit.edu	36	16	60492841	60492841	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001796	exon3	c.A290C	p.K97T	.	.	.
C16orf13	84326	broad.mit.edu	36	16	624633	624633	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040160	exon5	c.G512A	p.S171N	.	.	.
DYNC1LI2	1783	broad.mit.edu	36	16	65327563	65327563	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006141	exon5	c.C615T	p.S205S	.	.	.
EXOC3L	283849	broad.mit.edu	36	16	65778935	65778935	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178516	exon5	c.G734A	p.R245H	.	.	.
FHOD1	29109	broad.mit.edu	36	16	65828702	65828702	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013241	exon9	c.C934T	p.R312C	.	.	.
EDC4	23644	broad.mit.edu	36	16	66471178	66471178	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014329	exon15	c.G1821T	p.Q607H	.	.	.
NFATC3	4775	broad.mit.edu	36	16	66782272	66782272	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173163	exon9	c.A2199G	p.S733S	.	.	.
HAS3	3038	broad.mit.edu	36	16	67704850	67704850	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005329	exon3	c.C642T	p.C214C	.	.	.
DDX19A	55308	broad.mit.edu	36	16	68952885	68952885	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018332	exon5	c.G357T	p.E119D	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71549477	71549477	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006885	exon2	c.T2069C	p.M690T	.	.	.
FA2H	79152	broad.mit.edu	36	16	73317656	73317656	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024306	exon4	c.G581A	p.G194D	.	.	.
CNTNAP4	85445	broad.mit.edu	36	16	75070848	75070848	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033401	exon12	c.G1793A	p.S598N	.	.	.
CDYL2	124359	broad.mit.edu	36	16	79204064	79204064	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152342	exon5	c.G1178C	p.C393S	.	.	.
GAN	8139	broad.mit.edu	36	16	79948941	79948941	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022041	exon5	c.C877T	p.R293X	.	.	.
HSDL1	83693	broad.mit.edu	36	16	82720853	82720853	+	Nonsense_Mutation	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031463	exon5	c.T695A	p.L232X	.	.	.
LRRC50	123872	broad.mit.edu	36	16	82745697	82745697	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178452	exon4	c.G367T	p.E123X	.	.	.
FAM92B	339145	broad.mit.edu	36	16	83701480	83701480	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198491	exon2	c.G108A	p.T36T	.	.	.
FOXL1	2300	broad.mit.edu	36	16	85170097	85170097	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005250	exon1	c.C267A	p.N89K	.	.	.
ZCCHC14	23174	broad.mit.edu	36	16	86003571	86003571	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015144	exon12	c.G1846A	p.V616M	.	.	.
C16orf68	79091	broad.mit.edu	36	16	8636637	8636637	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024109	exon5	c.G667A	p.A223T	.	.	.
BANP	54971	broad.mit.edu	36	16	86609597	86609597	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001173543	exon7	c.G694A	p.A232T	.	.	.
ANKRD11	29123	broad.mit.edu	36	16	87873320	87873320	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013275	exon9	c.C7131T	p.D2377D	.	.	.
ANKRD11	29123	broad.mit.edu	36	16	87876152	87876152	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013275	exon9	c.C4299T	p.S1433S	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9764984	9764984	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000833	exon14	c.G3918A	p.R1306R	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9799659	9799659	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134408	exon11	c.G2332A	p.A778T	.	.	.
GTF3C1	2975	broad.mit.edu	36	16	27424864	27424865	+	Frame_Shift_Del	DEL	CT	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001520	exon10	c.1626_1627del	p.542_543del	.	.	.
IL27	246778	broad.mit.edu	36	16	28420845	28420845	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145659	exon4	c.415delG	p.A139fs	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19676467	19676467	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198129	exon28	c.C3447T	p.G1149G	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19755015	19755015	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127718	exon23	c.C3047T	p.S1016L	.	.	.
CABYR	26256	broad.mit.edu	36	18	19989973	19989973	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138644	exon4	c.T510C	p.A170A	.	.	.
DSC3	1825	broad.mit.edu	36	18	26859747	26859747	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001941	exon5	c.C607T	p.R203C	.	.	.
DSG4	147409	broad.mit.edu	36	18	27210896	27210896	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134453	exon1	c.C24T	p.N8N	.	.	.
TRAPPC8	22878	broad.mit.edu	36	18	27734950	27734950	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014939	exon10	c.G1426A	p.A476T	.	.	.
KLHL14	57565	broad.mit.edu	36	18	28514445	28514445	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020805	exon6	c.C1354T	p.R452C	.	.	.
ASXL3	80816	broad.mit.edu	36	18	29577218	29577218	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030632	exon12	c.G3408T	p.K1136N	.	.	.
MYOM1	8736	broad.mit.edu	36	18	3057413	3057413	+	Silent	SNP	G	A	A	rs1042723	by-frequency	TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019856	exon37	c.C4617T	p.G1539G	.	.	.
C18orf10	25941	broad.mit.edu	36	18	32630936	32630936	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015476	exon7	c.A733G	p.K245E	.	.	.
C18orf10	25941	broad.mit.edu	36	18	32632464	32632464	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015476	exon6	c.C603T	p.G201G	.	.	.
SIGLEC15	284266	broad.mit.edu	36	18	41659731	41659731	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213602	exon1	c.G40A	p.V14I	.	.	.
SMAD7	4092	broad.mit.edu	36	18	44702235	44702235	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005904	exon4	c.C786T	p.C262C	.	.	.
MBD1	4152	broad.mit.edu	36	18	46056018	46056018	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015847	exon7	c.C595T	p.R199C	.	.	.
MEX3C	51320	broad.mit.edu	36	18	46956954	46956954	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016626	exon2	c.A1745G	p.N582S	.	.	.
DCC	1630	broad.mit.edu	36	18	48121230	48121230	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005215	exon1	c.G75A	p.A25A	.	.	.
DCC	1630	broad.mit.edu	36	18	49279694	49279694	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005215	exon27	c.A3927G	p.Q1309Q	.	.	.
C18orf26	284254	broad.mit.edu	36	18	50416291	50416291	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173629	exon3	c.G550T	p.A184S	.	.	.
ATP8B1	5205	broad.mit.edu	36	18	53479504	53479504	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005603	exon22	c.C2607T	p.T869T	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5385619	5385619	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012307	exon20	c.C3061T	p.H1021Y	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5388137	5388137	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012307	exon17	c.G2355A	p.K785K	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5423547	5423547	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012307	exon8	c.C833T	p.T278M	.	.	.
DSEL	92126	broad.mit.edu	36	18	63330454	63330454	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032160	exon2	c.G2402A	p.W801X	.	.	.
LAMA1	284217	broad.mit.edu	36	18	7004009	7004009	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005559	exon23	c.C3168T	p.C1056C	.	.	.
ZADH2	284273	broad.mit.edu	36	18	71042700	71042700	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175907	exon2	c.C793T	p.R265C	.	.	.
CTDP1	9150	broad.mit.edu	36	18	75589916	75589916	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004715	exon11	c.G2439A	p.P813P	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8243226	8243226	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002845	exon17	c.T2529C	p.D843D	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8374591	8374591	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002845	exon28	c.A3912G	p.V1304V	.	.	.
RALBP1	10928	broad.mit.edu	36	18	9503198	9503198	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006788	exon2	c.A155G	p.D52G	.	.	.
PPP4R1	9989	broad.mit.edu	36	18	9537907	9537907	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042388	exon20	c.G2733A	p.E911E	.	.	.
TTC39C	125488	broad.mit.edu	36	18	19916975	19916975	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135993	exon6	c.916delA	p.K306fs	.	.	.
DSG4	147409	broad.mit.edu	36	18	27245268	27245268	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134453	exon14	c.2271delG	p.M757fs	.	.	.
ATP8B1	5205	broad.mit.edu	36	18	53480758	53480758	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005603	exon21	c.2373delT	p.F791fs	.	.	.
RTTN	25914	broad.mit.edu	36	18	66022472	66022472	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173630	exon3	c.227delC	p.P76fs	.	.	.
TXNDC2	84203	broad.mit.edu	36	18	9878061	9878061	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098529	exon2	c.1585delA	p.K529fs	.	.	.
GPR128	84873	broad.mit.edu	36	3	101848231	101848231	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032787	exon10	c.C1239T	p.N413N	.	.	.
IMPG2	50939	broad.mit.edu	36	3	102455250	102455250	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016247	exon11	c.G1219A	p.A407T	.	.	.
ALCAM	214	broad.mit.edu	36	3	106748982	106748982	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001627	exon11	c.A1299G	p.I433M	.	.	.
QTRTD1	79691	broad.mit.edu	36	3	115278433	115278433	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024638	exon7	c.C700T	p.R234C	.	.	.
ARHGAP31	57514	broad.mit.edu	36	3	120603934	120603934	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020754	exon10	c.G1645T	p.A549S	.	.	.
POLQ	10721	broad.mit.edu	36	3	122683193	122683193	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199420	exon19	c.C6127T	p.R2043X	.	.	.
POLQ	10721	broad.mit.edu	36	3	122690701	122690701	+	Missense_Mutation	SNP	C	A	A	rs3218640	by-cluster,by-frequency,by-hapmap	TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199420	exon16	c.G3767T	p.G1256V	.	.	.
PARP14	54625	broad.mit.edu	36	3	123915877	123915877	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017554	exon12	c.G3911A	p.G1304E	.	.	.
ADCY5	111	broad.mit.edu	36	3	124491329	124491329	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183357	exon19	c.T3490C	p.Y1164H	.	.	.
ITGB5	3693	broad.mit.edu	36	3	125975415	125975415	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002213	exon11	c.C1728T	p.C576C	.	.	.
ZXDC	79364	broad.mit.edu	36	3	127667717	127667717	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025112	exon5	c.A1412T	p.H471L	.	.	.
CAND2	23066	broad.mit.edu	36	3	12833079	12833079	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001162499	exon10	c.C1648T	p.R550W	.	.	.
RHO	6010	broad.mit.edu	36	3	130734147	130734147	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000539	exon4	c.G778A	p.A260T	.	.	.
BFSP2	8419	broad.mit.edu	36	3	134668438	134668438	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003571	exon5	c.A968G	p.N323S	.	.	.
TF	7018	broad.mit.edu	36	3	134977045	134977045	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001063	exon15	c.C1766A	p.P589H	.	.	.
CEP63	80254	broad.mit.edu	36	3	135708765	135708765	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042383	exon3	c.C169T	p.R57C	.	.	.
MSL2	55167	broad.mit.edu	36	3	137353097	137353097	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018133	exon2	c.C1316A	p.P439H	.	.	.
ARMC8	25852	broad.mit.edu	36	3	139446734	139446734	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213654	exon13	c.C1111T	p.R371C	.	.	.
ACPL2	92370	broad.mit.edu	36	3	142494067	142494067	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152282	exon8	c.A773G	p.Q258R	.	.	.
GFM1	85476	broad.mit.edu	36	3	159891884	159891884	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024996	exon18	c.C2190T	p.D730D	.	.	.
SAMD7	344658	broad.mit.edu	36	3	171127491	171127491	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182610	exon6	c.C747T	p.A249A	.	.	.
PHC3	80012	broad.mit.edu	36	3	171297755	171297755	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024947	exon15	c.C2945T	p.A982V	.	.	.
TBC1D5	9779	broad.mit.edu	36	3	17230832	17230832	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134380	exon18	c.C1623T	p.S541S	.	.	.
GHSR	2693	broad.mit.edu	36	3	173648817	173648817	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198407	exon1	c.C81T	p.N27N	.	.	.
ZNF639	51193	broad.mit.edu	36	3	180533853	180533853	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016331	exon7	c.A407G	p.E136G	.	.	.
PEX5L	51555	broad.mit.edu	36	3	181008293	181008293	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016559	exon14	c.C1539T	p.R513R	.	.	.
SOX2	6657	broad.mit.edu	36	3	182913070	182913070	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003106	exon1	c.C228T	p.G76G	.	.	.
KLHL6	89857	broad.mit.edu	36	3	184708565	184708565	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130446	exon3	c.G885T	p.R295S	.	.	.
AP2M1	1173	broad.mit.edu	36	3	185382297	185382297	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025205	exon7	c.G821A	p.R274K	.	.	.
ALG3	10195	broad.mit.edu	36	3	185445752	185445752	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001006941	exon4	c.C389T	p.A130V	.	.	.
EPHB3	2049	broad.mit.edu	36	3	185781636	185781636	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004443	exon14	c.C2721T	p.S907S	.	.	.
TRA2B	6434	broad.mit.edu	36	3	187126086	187126086	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004593	exon3	c.C193T	p.R65X	.	.	.
LPP	4026	broad.mit.edu	36	3	190074838	190074838	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167671	exon11	c.C1716T	p.C572C	.	.	.
TP63	8626	broad.mit.edu	36	3	191069199	191069199	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114980	exon6	c.C847T	p.P283S	.	.	.
HES1	3280	broad.mit.edu	36	3	195338202	195338202	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005524	exon4	c.A329G	p.Y110C	.	.	.
GP5	2814	broad.mit.edu	36	3	195599393	195599393	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004488	exon2	c.G908A	p.R303H	.	.	.
LRRC33	375387	broad.mit.edu	36	3	197871457	197871457	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198565	exon3	c.T546C	p.R182R	.	.	.
LRRC33	375387	broad.mit.edu	36	3	197872497	197872497	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198565	exon3	c.C1586T	p.A529V	.	.	.
TRIM71	131405	broad.mit.edu	36	3	32908003	32908003	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039111	exon4	c.A2303G	p.N768S	.	.	.
CLASP2	23122	broad.mit.edu	36	3	33592758	33592758	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015097	exon24	c.G2361A	p.G787G	.	.	.
CLASP2	23122	broad.mit.edu	36	3	33601323	33601323	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015097	exon22	c.C2162T	p.A721V	.	.	.
DCLK3	85443	broad.mit.edu	36	3	36755114	36755114	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033403	exon2	c.C41T	p.A14V	.	.	.
EPM2AIP1	9852	broad.mit.edu	36	3	37009442	37009442	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014805	exon1	c.G131A	p.R44H	.	.	.
GOLGA4	2803	broad.mit.edu	36	3	37267892	37267892	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172713	exon2	c.G75A	p.A25A	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38863843	38863843	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014139	exon26	c.C4722T	p.C1574C	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38920506	38920506	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014139	exon12	c.G1696A	p.V566I	.	.	.
TTC21A	199223	broad.mit.edu	36	3	39145631	39145631	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105513	exon14	c.G1838A	p.R613H	.	.	.
TTC21A	199223	broad.mit.edu	36	3	39153790	39153790	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105513	exon24	c.C3235T	p.R1079W	.	.	.
XIRP1	165904	broad.mit.edu	36	3	39203108	39203108	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194293	exon2	c.C2833T	p.R945W	.	.	.
CHL1	10752	broad.mit.edu	36	3	407785	407785	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006614	exon22	c.A2734G	p.N912D	.	.	.
TRAK1	22906	broad.mit.edu	36	3	42107966	42107966	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042646	exon1	c.A1G	p.M1V	.	.	.
TRAK1	22906	broad.mit.edu	36	3	42239861	42239861	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042646	exon16	c.C2490T	p.S830S	.	.	.
ZNF662	389114	broad.mit.edu	36	3	42925360	42925360	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134656	exon3	c.C286A	p.P96T	.	.	.
CSPG5	10675	broad.mit.edu	36	3	47593509	47593509	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006574	exon2	c.C1011T	p.I337I	.	.	.
ATRIP	84126	broad.mit.edu	36	3	48476978	48476978	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130384	exon8	c.G1521A	p.G507G	.	.	.
COL7A1	1294	broad.mit.edu	36	3	48579347	48579347	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000094	exon110	c.G8223T	p.Q2741H	.	.	.
QARS	5859	broad.mit.edu	36	3	49115838	49115838	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005051	exon5	c.C460T	p.R154W	.	.	.
CAMKV	79012	broad.mit.edu	36	3	49872621	49872621	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024046	exon10	c.G929T	p.R310M	.	.	.
MON1A	84315	broad.mit.edu	36	3	49923236	49923236	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032355	exon4	c.G990A	p.A330A	.	.	.
SEMA3F	6405	broad.mit.edu	36	3	50195877	50195877	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004186	exon12	c.C1109T	p.A370V	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51327590	51327590	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004947	exon32	c.C3352T	p.L1118F	.	.	.
RBM15B	29890	broad.mit.edu	36	3	51405491	51405491	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013286	exon1	c.C1621A	p.R541R	.	.	.
IQCF3	401067	broad.mit.edu	36	3	51839627	51839627	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085479	exon5	c.C235T	p.R79W	.	.	.
RRP9	9136	broad.mit.edu	36	3	51945326	51945326	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004704	exon8	c.G722A	p.R241Q	.	.	.
STAB1	23166	broad.mit.edu	36	3	52511705	52511705	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015136	exon6	c.G505A	p.G169R	.	.	.
ITIH1	3697	broad.mit.edu	36	3	52793524	52793524	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166434	exon9	c.G972T	p.Q324H	.	.	.
DCP1A	55802	broad.mit.edu	36	3	53301349	53301349	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018403	exon7	c.C1173T	p.S391S	.	.	.
IL17RD	54756	broad.mit.edu	36	3	57106735	57106735	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017563	exon12	c.T2036C	p.M679T	.	.	.
APPL1	26060	broad.mit.edu	36	3	57276857	57276857	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012096	exon20	c.A1890G	p.E630E	.	.	.
ASB14	142686	broad.mit.edu	36	3	57287543	57287543	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130387	exon1	c.T478C	p.Y160H	.	.	.
KCTD6	200845	broad.mit.edu	36	3	58462369	58462369	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153331	exon2	c.C684A	p.F228L	.	.	.
CADPS	8618	broad.mit.edu	36	3	62611580	62611580	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183393	exon5	c.G1185A	p.V395V	.	.	.
C3orf64	285203	broad.mit.edu	36	3	69141605	69141605	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173654	exon4	c.G83T	p.S28I	.	.	.
LMOD3	56203	broad.mit.edu	36	3	69251728	69251728	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198271	exon2	c.C468T	p.D156D	.	.	.
PDZRN3	23024	broad.mit.edu	36	3	73515379	73515379	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015009	exon10	c.G3028A	p.D1010N	.	.	.
CNTN3	5067	broad.mit.edu	36	3	74417146	74417146	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020872	exon19	c.C2704T	p.P902S	.	.	.
ARL13B	200894	broad.mit.edu	36	3	95181973	95181973	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174150	exon1	c.G16A	p.A6T	.	.	.
CPNE9	151835	broad.mit.edu	36	3	9743814	9743814	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153635	exon19	c.G1420T	p.G474C	.	.	.
OR5H14	403273	broad.mit.edu	36	3	99351004	99351004	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005514	exon1	c.C85A	p.L29M	.	.	.
ZBTB20	26137	broad.mit.edu	36	3	115540693	115540693	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164343	exon12	c.1856delC	p.P619fs	.	.	.
B3GALNT1	8706	broad.mit.edu	36	3	162286573	162286573	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033168	exon4	c.664delA	p.T222fs	.	.	.
SLITRK3	22865	broad.mit.edu	36	3	166390028	166390028	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014926	exon2	c.1285delT	p.W429fs	.	.	.
MECOM	2122	broad.mit.edu	36	3	170315951	170315951	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105077	exon8	c.2034delA	p.K678fs	.	.	.
ATP11B	23200	broad.mit.edu	36	3	184085368	184085368	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014616	exon22	c.2643delT	p.Y881fs	.	.	.
YEATS2	55689	broad.mit.edu	36	3	184991391	184991391	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018023	exon21	c.3026delC	p.T1009fs	.	.	.
ABCC5	10057	broad.mit.edu	36	3	185147951	185147951	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005688	exon23	c.3269delT	p.L1090fs	.	.	.
NBEAL2	23218	broad.mit.edu	36	3	47016626	47016626	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015175	exon27	c.4033delT	p.F1345fs	.	.	.
COL7A1	1294	broad.mit.edu	36	3	48587875	48587875	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000094	exon73	c.6081delC	p.P2027fs	.	.	.
MAGI1	9223	broad.mit.edu	36	3	65317822	65317822	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015520	exon25	c.3833delC	p.P1278fs	.	.	.
PDZRN3	23024	broad.mit.edu	36	3	73515860	73515860	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015009	exon10	c.2547delC	p.P849fs	.	.	.
STX19	415117	broad.mit.edu	36	3	95216506	95216506	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001850	exon2	c.298delA	p.I100fs	.	.	.
GNPTAB	79158	broad.mit.edu	36	12	100682470	100682470	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024312	exon13	c.C2356T	p.Q786X	.	.	.
KIAA1033	23325	broad.mit.edu	36	12	104062679	104062679	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015275	exon22	c.C2233A	p.L745I	.	.	.
CRY1	1407	broad.mit.edu	36	12	105917554	105917554	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004075	exon7	c.C1042T	p.R348C	.	.	.
CRY1	1407	broad.mit.edu	36	12	105917953	105917953	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004075	exon6	c.C722T	p.A241V	.	.	.
FICD	11153	broad.mit.edu	36	12	107436333	107436333	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007076	exon3	c.C328T	p.L110L	.	.	.
SART3	9733	broad.mit.edu	36	12	107478791	107478791	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014706	exon1	c.G270A	p.E90E	.	.	.
TCHP	84260	broad.mit.edu	36	12	108831100	108831100	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143852	exon8	c.G854A	p.R285H	.	.	.
CUX2	23316	broad.mit.edu	36	12	110264215	110264215	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015267	exon21	c.G3634A	p.V1212I	.	.	.
ATXN2	6311	broad.mit.edu	36	12	110392364	110392364	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002973	exon20	c.G3247A	p.A1083T	.	.	.
DDX54	79039	broad.mit.edu	36	12	112088092	112088092	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024072	exon13	c.G1543A	p.A515T	.	.	.
DDX54	79039	broad.mit.edu	36	12	112092013	112092013	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024072	exon12	c.G1359A	p.L453L	.	.	.
DDX54	79039	broad.mit.edu	36	12	112094627	112094627	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024072	exon11	c.C1193T	p.A398V	.	.	.
C12orf52	84934	broad.mit.edu	36	12	112113578	112113578	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032848	exon4	c.G383A	p.R128Q	.	.	.
IQCD	115811	broad.mit.edu	36	12	112130306	112130306	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138451	exon2	c.A49G	p.I17V	.	.	.
RBM19	9904	broad.mit.edu	36	12	112864534	112864534	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016196	exon14	c.T1715C	p.V572A	.	.	.
RBM19	9904	broad.mit.edu	36	12	112880151	112880151	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016196	exon6	c.C659T	p.S220L	.	.	.
SRRM4	84530	broad.mit.edu	36	12	118039189	118039189	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194286	exon4	c.C430T	p.R144X	.	.	.
PRKAB1	5564	broad.mit.edu	36	12	118594554	118594554	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006253	exon2	c.C225A	p.A75A	.	.	.
CIT	11113	broad.mit.edu	36	12	118695051	118695051	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007174	exon17	c.G1988A	p.R663H	.	.	.
GCN1L1	10985	broad.mit.edu	36	12	119082145	119082145	+	Silent	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006836	exon24	c.C2616A	p.G872G	.	.	.
ANAPC5	51433	broad.mit.edu	36	12	120257899	120257899	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001137559	exon7	c.G473A	p.S158N	.	.	.
KDM2B	84678	broad.mit.edu	36	12	120498129	120498129	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032590	exon3	c.T290C	p.V97A	.	.	.
DIABLO	56616	broad.mit.edu	36	12	121275028	121275028	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138929	exon3	c.C167T	p.A56V	.	.	.
LRP6	4040	broad.mit.edu	36	12	12224115	12224115	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002336	exon7	c.C1441T	p.R481C	.	.	.
SBNO1	55206	broad.mit.edu	36	12	122379381	122379381	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018183	exon9	c.A1146C	p.K382N	.	.	.
LOH12CR1	118426	broad.mit.edu	36	12	12509876	12509876	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058169	exon4	c.G490A	p.D164N	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128125325	128125325	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133448	exon9	c.A2348C	p.K783T	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128751132	128751132	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133448	exon2	c.C144T	p.P48P	.	.	.
EP400	57634	broad.mit.edu	36	12	131096048	131096048	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015409	exon38	c.C7013T	p.A2338V	.	.	.
PLBD1	79887	broad.mit.edu	36	12	14597552	14597552	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024829	exon2	c.A177G	p.V59V	.	.	.
RERG	85004	broad.mit.edu	36	12	15153348	15153348	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032918	exon5	c.A563G	p.Q188R	.	.	.
PTPRO	5800	broad.mit.edu	36	12	15528228	15528228	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002848	exon2	c.A129G	p.S43S	.	.	.
PYROXD1	79912	broad.mit.edu	36	12	21512711	21512711	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024854	exon12	c.T1259C	p.V420A	.	.	.
CMAS	55907	broad.mit.edu	36	12	22105099	22105099	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018686	exon5	c.T760C	p.W254R	.	.	.
KRAS	3845	broad.mit.edu	36	12	25271544	25271545	+	Missense_Mutation	DNP	GA	TT	TT	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon3	c.180_181AA	KRAS,thyroid,NS,Substitution - Missense,+1	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2659122	2659122	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001129842	exon42	c.C5343T	p.P1781P	.	.	.
PPFIBP1	8496	broad.mit.edu	36	12	27717980	27717980	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198915	exon14	c.C925T	p.Q309X	.	.	.
TEAD4	7004	broad.mit.edu	36	12	3001280	3001280	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003213	exon10	c.C733T	p.H245Y	.	.	.
FGD4	121512	broad.mit.edu	36	12	32626443	32626443	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139241	exon4	c.G375A	p.T125T	.	.	.
PKP2	5318	broad.mit.edu	36	12	32846651	32846651	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004572	exon11	c.C2252T	p.S751L	.	.	.
ALG10B	144245	broad.mit.edu	36	12	37000666	37000666	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013620	exon3	c.T806C	p.V269A	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39624071	39624071	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175038	exon13	c.G1482A	p.T494T	.	.	.
PDZRN4	29951	broad.mit.edu	36	12	40253817	40253817	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164595	exon10	c.T2969G	p.L990R	.	.	.
GXYLT1	283464	broad.mit.edu	36	12	40777637	40777637	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173601	exon7	c.T1035C	p.H345H	.	.	.
C12orf5	57103	broad.mit.edu	36	12	4330765	4330765	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020375	exon5	c.C342T	p.C114C	.	.	.
NELL2	4753	broad.mit.edu	36	12	43345538	43345538	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145108	exon13	c.T1440C	p.C480C	.	.	.
ARID2	196528	broad.mit.edu	36	12	44516943	44516943	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152641	exon8	c.A925G	p.N309D	.	.	.
SLC38A2	54407	broad.mit.edu	36	12	45041230	45041230	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018976	exon16	c.G1452A	p.L484L	.	.	.
AMIGO2	347902	broad.mit.edu	36	12	45757508	45757508	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181847	exon2	c.C1545T	p.D515D	.	.	.
FAM113B	91523	broad.mit.edu	36	12	45916221	45916221	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138371	exon2	c.G1108T	p.E370X	.	.	.
RPAP3	79657	broad.mit.edu	36	12	46359559	46359559	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146076	exon11	c.C794T	p.P265L	.	.	.
ENDOU	8909	broad.mit.edu	36	12	46405415	46405415	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172439	exon1	c.T49A	p.W17R	.	.	.
OR8S1	341568	broad.mit.edu	36	12	47206155	47206155	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005203	exon1	c.C474A	p.I158I	.	.	.
RND1	27289	broad.mit.edu	36	12	47541065	47541065	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014470	exon4	c.G435A	p.A145A	.	.	.
MLL2	8085	broad.mit.edu	36	12	47721315	47721315	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003482	exon31	c.G6505A	p.A2169T	.	.	.
MLL2	8085	broad.mit.edu	36	12	47726207	47726207	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003482	exon17	c.G4601A	p.C1534Y	.	.	.
MLL2	8085	broad.mit.edu	36	12	47730204	47730204	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003482	exon11	c.C3434A	p.A1145D	.	.	.
RHEBL1	121268	broad.mit.edu	36	12	47745172	47745172	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144593	exon8	c.G533A	p.R178H	.	.	.
KCNH3	23416	broad.mit.edu	36	12	48237601	48237601	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012284	exon15	c.G2850A	p.Q950Q	.	.	.
SMARCD1	6602	broad.mit.edu	36	12	48770445	48770445	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139071	exon8	c.T1028C	p.L343P	.	.	.
LIMA1	51474	broad.mit.edu	36	12	48857628	48857628	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113546	exon11	c.G1769A	p.R590H	.	.	.
KCNA1	3736	broad.mit.edu	36	12	4890899	4890899	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000217	exon2	c.G94C	p.D32H	.	.	.
DIP2B	57609	broad.mit.edu	36	12	49394526	49394526	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173602	exon23	c.G2731T	p.G911X	.	.	.
SLC4A8	9498	broad.mit.edu	36	12	50140146	50140146	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039960	exon8	c.C1000T	p.P334S	.	.	.
KCNA5	3741	broad.mit.edu	36	12	5024440	5024440	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002234	exon1	c.A866G	p.H289R	.	.	.
KRT83	3889	broad.mit.edu	36	12	50999336	50999336	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002282	exon2	c.A464G	p.N155S	.	.	.
KRT83	3889	broad.mit.edu	36	12	51001207	51001207	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002282	exon1	c.C180T	p.R60R	.	.	.
KRT85	3891	broad.mit.edu	36	12	51041062	51041062	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002283	exon9	c.G1366A	p.G456S	.	.	.
KRT84	3890	broad.mit.edu	36	12	51060510	51060510	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033045	exon7	c.G1328T	p.R443L	.	.	.
KRT6B	3854	broad.mit.edu	36	12	51128940	51128940	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005555	exon6	c.C1156T	p.R386C	.	.	.
AMHR2	269	broad.mit.edu	36	12	52105911	52105911	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164691	exon6	c.C793T	p.R265W	.	.	.
SMUG1	23583	broad.mit.edu	36	12	52863990	52863990	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014311	exon3	c.T2C	p.M1T	.	.	.
ITGA7	3679	broad.mit.edu	36	12	54380335	54380335	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144997	exon5	c.G489A	p.P163P	.	.	.
GDF11	10220	broad.mit.edu	36	12	54428840	54428840	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005811	exon2	c.C649T	p.R217C	.	.	.
NTF3	4908	broad.mit.edu	36	12	5473678	5473678	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102654	exon2	c.C76A	p.L26I	.	.	.
ERBB3	2065	broad.mit.edu	36	12	54768112	54768112	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001982	exon7	c.G773A	p.R258H	.	.	.
TIMELESS	8914	broad.mit.edu	36	12	55112533	55112533	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003920	exon7	c.G574T	p.A192S	.	.	.
NACA	4666	broad.mit.edu	36	12	55393142	55393142	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113203	exon7	c.A6070C	p.T2024P	.	.	.
MYO1A	4640	broad.mit.edu	36	12	55718918	55718918	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005379	exon16	c.G1475A	p.R492H	.	.	.
LRP1	4035	broad.mit.edu	36	12	55857231	55857231	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002332	exon25	c.C4132T	p.R1378W	.	.	.
LRP1	4035	broad.mit.edu	36	12	55890831	55890831	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002332	exon83	c.C12818T	p.A4273V	.	.	.
MARS	4141	broad.mit.edu	36	12	56192877	56192877	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004990	exon15	c.G1830A	p.T610T	.	.	.
VWF	7450	broad.mit.edu	36	12	5955657	5955657	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000552	exon43	c.G7318A	p.V2440M	.	.	.
SRGAP1	57522	broad.mit.edu	36	12	62664108	62664108	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020762	exon2	c.C182T	p.T61M	.	.	.
CD27	939	broad.mit.edu	36	12	6430721	6430721	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001242	exon6	c.G685A	p.A229T	.	.	.
HELB	92797	broad.mit.edu	36	12	65011246	65011246	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033647	exon12	c.C2716T	p.R906C	.	.	.
ACRBP	84519	broad.mit.edu	36	12	6623676	6623676	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032489	exon5	c.A832G	p.T278A	.	.	.
DYRK2	8445	broad.mit.edu	36	12	66337377	66337377	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003583	exon2	c.G204A	p.K68K	.	.	.
CPSF6	11052	broad.mit.edu	36	12	67942595	67942595	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007007	exon9	c.C1645T	p.R549C	.	.	.
CD4	920	broad.mit.edu	36	12	6795431	6795431	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195014	exon4	c.C19T	p.H7Y	.	.	.
GPR162	27239	broad.mit.edu	36	12	6803744	6803744	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019858	exon2	c.G419A	p.G140D	.	.	.
EMG1	10436	broad.mit.edu	36	12	6954659	6954659	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006331	exon5	c.A478G	p.R160G	.	.	.
TRHDE	29953	broad.mit.edu	36	12	71149898	71149898	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013381	exon4	c.T1274C	p.V425A	.	.	.
CD163L1	283316	broad.mit.edu	36	12	7442377	7442377	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174941	exon7	c.C1479T	p.Y493Y	.	.	.
ZDHHC17	23390	broad.mit.edu	36	12	75723278	75723278	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015336	exon3	c.T248C	p.V83A	.	.	.
E2F7	144455	broad.mit.edu	36	12	75961029	75961029	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203394	exon7	c.G1070A	p.R357Q	.	.	.
SLC2A14	144195	broad.mit.edu	36	12	7858363	7858363	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153449	exon12	c.C1379T	p.T460I	.	.	.
MYF6	4618	broad.mit.edu	36	12	79625776	79625776	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002469	exon1	c.C147T	p.P49P	.	.	.
MYF5	4617	broad.mit.edu	36	12	79635206	79635206	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005593	exon1	c.A233G	p.K78R	.	.	.
TSPAN19	144448	broad.mit.edu	36	12	83941260	83941260	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100917	exon5	c.C314T	p.A105V	.	.	.
PHC1	1911	broad.mit.edu	36	12	8974433	8974433	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004426	exon7	c.G748T	p.V250L	.	.	.
M6PR	4074	broad.mit.edu	36	12	8985749	8985749	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002355	exon7	c.C766T	p.R256C	.	.	.
A2M	2	broad.mit.edu	36	12	9121633	9121633	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000014	exon26	c.G3207A	p.W1069X	.	.	.
A2M	2	broad.mit.edu	36	12	9137438	9137438	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000014	exon18	c.A2130G	p.S710S	.	.	.
NDUFA12	55967	broad.mit.edu	36	12	93889495	93889495	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018838	exon4	c.C290A	p.P97H	.	.	.
USP44	84101	broad.mit.edu	36	12	94451337	94451337	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042403	exon2	c.G827A	p.R276K	.	.	.
AMDHD1	144193	broad.mit.edu	36	12	94874742	94874742	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152435	exon4	c.T458C	p.V153A	.	.	.
PWP1	11137	broad.mit.edu	36	12	106610920	106610920	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007062	exon5	c.419delG	p.R140fs	.	.	.
SSH1	54434	broad.mit.edu	36	12	107718786	107718786	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161331	exon11	c.1080delT	p.F360fs	.	.	.
FBXO21	23014	broad.mit.edu	36	12	116108703	116108703	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015002	exon3	c.432delT	p.F144fs	.	.	.
MLXIP	22877	broad.mit.edu	36	12	121184138	121184138	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014938	exon9	c.1383delC	p.N461fs	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122945187	122945187	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207437	exon53	c.8890delC	p.P2964fs	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129478717	129478717	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015347	exon12	c.2321delG	p.G774fs	.	.	.
CEP290	80184	broad.mit.edu	36	12	87002542	87002542	+	Frame_Shift_Del	DEL	T	-	-	rs62640572	unknown	TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025114	exon35	c.4656delA	p.K1552fs	.	.	.
CYFIP1	23191	broad.mit.edu	36	15	20505713	20505713	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014608	exon14	c.C1422T	p.H474H	.	.	.
MAGEL2	54551	broad.mit.edu	36	15	21441109	21441109	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019066	exon1	c.G2874T	p.W958C	.	.	.
UBE3A	7337	broad.mit.edu	36	15	23152934	23152934	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130839	exon8	c.C1956T	p.H652H	.	.	.
UBE3A	7337	broad.mit.edu	36	15	23167766	23167766	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130839	exon6	c.G648A	p.Q216Q	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23510457	23510457	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024490	exon10	c.T1801G	p.S601A	.	.	.
GABRB3	2562	broad.mit.edu	36	15	24363956	24363956	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021912	exon7	c.T700A	p.S234T	.	.	.
GABRA5	2558	broad.mit.edu	36	15	24679677	24679677	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165037	exon6	c.G377A	p.S126N	.	.	.
RYR3	6263	broad.mit.edu	36	15	31811027	31811027	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036	exon48	c.C7264T	p.L2422F	.	.	.
RYR3	6263	broad.mit.edu	36	15	31933929	31933929	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036	exon97	c.T13847C	p.V4616A	.	.	.
THBS1	7057	broad.mit.edu	36	15	37663587	37663587	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003246	exon5	c.C810T	p.C270C	.	.	.
THBS1	7057	broad.mit.edu	36	15	37673595	37673595	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003246	exon20	c.C3271T	p.R1091C	.	.	.
PLCB2	5330	broad.mit.edu	36	15	38370283	38370283	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004573	exon28	c.G3084T	p.E1028D	.	.	.
C15orf52	388115	broad.mit.edu	36	15	38418275	38418275	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207380	exon4	c.T485C	p.V162A	.	.	.
CHAC1	79094	broad.mit.edu	36	15	39035142	39035142	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142776	exon4	c.G538A	p.A180T	.	.	.
MGA	23269	broad.mit.edu	36	15	39776381	39776381	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164273	exon3	c.A1881G	p.R627R	.	.	.
MGA	23269	broad.mit.edu	36	15	39834044	39834044	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164273	exon18	c.T7126C	p.S2376P	.	.	.
TTBK2	146057	broad.mit.edu	36	15	40854670	40854670	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173500	exon13	c.G1953A	p.T651T	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41511738	41511738	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005657	exon17	c.T3606C	p.S1202S	.	.	.
WDR76	79968	broad.mit.edu	36	15	41930701	41930701	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167941	exon9	c.G965A	p.R322H	.	.	.
SLC28A2	9153	broad.mit.edu	36	15	43347868	43347868	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004212	exon13	c.G1368T	p.Q456H	.	.	.
MYEF2	50804	broad.mit.edu	36	15	46246854	46246854	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016132	exon3	c.C407T	p.A136V	.	.	.
FBN1	2200	broad.mit.edu	36	15	46588173	46588173	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000138	exon15	c.A1735G	p.R579G	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48717010	48717010	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017672	exon7	c.T733A	p.F245I	.	.	.
AP4E1	23431	broad.mit.edu	36	15	49077073	49077073	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007347	exon18	c.T2605C	p.Y869H	.	.	.
AP4E1	23431	broad.mit.edu	36	15	49078707	49078707	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007347	exon19	c.T3051C	p.A1017A	.	.	.
TMOD2	29767	broad.mit.edu	36	15	49885968	49885968	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014548	exon9	c.C979T	p.R327X	.	.	.
MAPK6	5597	broad.mit.edu	36	15	50126482	50126482	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002748	exon2	c.T533C	p.M178T	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52343752	52343752	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080534	exon7	c.C3543A	p.N1181K	.	.	.
CCPG1	9236	broad.mit.edu	36	15	53439704	53439704	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004748	exon8	c.A1559G	p.E520G	.	.	.
NEDD4	4734	broad.mit.edu	36	15	53996305	53996305	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198400	exon1	c.G17A	p.R6Q	.	.	.
CGNL1	84952	broad.mit.edu	36	15	55531007	55531007	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032866	exon5	c.T1821C	p.S607S	.	.	.
ALDH1A2	8854	broad.mit.edu	36	15	56093708	56093708	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003888	exon2	c.G181A	p.A61T	.	.	.
ADAM10	102	broad.mit.edu	36	15	56707265	56707265	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001110	exon10	c.A1286G	p.N429S	.	.	.
RBPMS2	348093	broad.mit.edu	36	15	62827776	62827776	+	Silent	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194272	exon6	c.C462A	p.A154A	.	.	.
CLPX	10845	broad.mit.edu	36	15	63236290	63236290	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006660	exon9	c.G1091A	p.G364D	.	.	.
C15orf59	388135	broad.mit.edu	36	15	71819420	71819420	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039614	exon2	c.A773C	p.Q258P	.	.	.
PML	5371	broad.mit.edu	36	15	72077533	72077533	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033238	exon2	c.C265A	p.P89T	.	.	.
SGK269	79834	broad.mit.edu	36	15	75259857	75259857	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024776	exon3	c.C1467T	p.L489L	.	.	.
LINGO1	84894	broad.mit.edu	36	15	75694673	75694673	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032808	exon2	c.C631A	p.L211M	.	.	.
CTSH	1512	broad.mit.edu	36	15	77010870	77010870	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004390	exon7	c.T526C	p.F176L	.	.	.
IL16	3603	broad.mit.edu	36	15	79345113	79345113	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172128	exon4	c.G480A	p.A160A	.	.	.
MEX3B	84206	broad.mit.edu	36	15	80123678	80123678	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032246	exon2	c.G588A	p.T196T	.	.	.
SH3GL3	6457	broad.mit.edu	36	15	82036393	82036393	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003027	exon6	c.C520T	p.R174X	.	.	.
ZNF592	9640	broad.mit.edu	36	15	83135051	83135051	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014630	exon5	c.C2332T	p.R778C	.	.	.
ALPK3	57538	broad.mit.edu	36	15	83201121	83201121	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020778	exon6	c.G2754A	p.A918A	.	.	.
KLHL25	64410	broad.mit.edu	36	15	84113715	84113715	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022480	exon2	c.G331A	p.A111T	.	.	.
MRPL46	26589	broad.mit.edu	36	15	86803981	86803981	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022163	exon4	c.C707A	p.A236E	.	.	.
ACAN	176	broad.mit.edu	36	15	87202309	87202309	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135	exon12	c.C5489A	p.T1830K	.	.	.
HAPLN3	145864	broad.mit.edu	36	15	87222431	87222431	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178232	exon5	c.G857A	p.C286Y	.	.	.
RLBP1	6017	broad.mit.edu	36	15	87561486	87561486	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000326	exon5	c.C215T	p.A72V	.	.	.
ANPEP	290	broad.mit.edu	36	15	88150319	88150319	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001150	exon2	c.A500G	p.K167R	.	.	.
IDH2	3418	broad.mit.edu	36	15	88432939	88432939	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002168	exon4	c.C418T	p.R140W	.	.	.
MAN2A2	4122	broad.mit.edu	36	15	89254440	89254440	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006122	exon9	c.G1491A	p.A497A	.	.	.
LRRC28	123355	broad.mit.edu	36	15	97691785	97691785	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144598	exon6	c.C520T	p.R174C	.	.	.
LASS3	204219	broad.mit.edu	36	15	98842362	98842362	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178842	exon6	c.T323C	p.L108S	.	.	.
CHSY1	22856	broad.mit.edu	36	15	99536114	99536114	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014918	exon3	c.G1411A	p.A471T	.	.	.
ZNF280D	54816	broad.mit.edu	36	15	54722478	54722478	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017661	exon20	c.2223delA	p.K741fs	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63770339	63770340	+	Frame_Shift_Del	DEL	AG	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144823	exon23	c.3643_3644del	p.1215_1215del	.	.	.
SCAMP2	10066	broad.mit.edu	36	15	72928049	72928049	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005697	exon7	c.679delT	p.C227fs	.	.	.
C15orf39	56905	broad.mit.edu	36	15	73286017	73286017	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015492	exon2	c.575delG	p.R192fs	.	.	.
MANBA	4126	broad.mit.edu	36	4	103830808	103830808	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005908	exon6	c.T842C	p.I281T	.	.	.
TACR3	6870	broad.mit.edu	36	4	104730401	104730401	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001059	exon5	c.G1285A	p.A429T	.	.	.
INTS12	57117	broad.mit.edu	36	4	106827298	106827298	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142471	exon6	c.G804T	p.K268N	.	.	.
DKK2	27123	broad.mit.edu	36	4	108064652	108064652	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014421	exon4	c.C688T	p.R230C	.	.	.
SEC24B	10427	broad.mit.edu	36	4	110650712	110650712	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006323	exon8	c.T1772C	p.L591P	.	.	.
CFI	3426	broad.mit.edu	36	4	110881510	110881510	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000204	exon13	c.G1740A	p.Q580Q	.	.	.
ANK2	287	broad.mit.edu	36	4	114495499	114495499	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001148	exon38	c.A6276G	p.I2092M	.	.	.
C4orf31	79625	broad.mit.edu	36	4	122176932	122176932	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024574	exon4	c.A1644G	p.I548M	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123347819	123347819	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015312	exon14	c.G1603A	p.A535T	.	.	.
FAT4	79633	broad.mit.edu	36	4	126458027	126458027	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024582	exon1	c.C1011T	p.A337A	.	.	.
FAT4	79633	broad.mit.edu	36	4	126591753	126591753	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024582	exon9	c.T10132G	p.F3378V	.	.	.
FAT4	79633	broad.mit.edu	36	4	126592282	126592282	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024582	exon9	c.C10661A	p.A3554D	.	.	.
FAT4	79633	broad.mit.edu	36	4	126631253	126631254	+	Missense_Mutation	DNP	CT	TC	TC	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024582	exon17	c.13826_13827TC	.	.	.	.
MFSD8	256471	broad.mit.edu	36	4	129073590	129073590	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152778	exon9	c.C863T	p.T288I	.	.	.
SCLT1	132320	broad.mit.edu	36	4	130025102	130025102	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144643	exon21	c.A2047C	p.M683L	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138662173	138662173	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019035	exon4	c.G2868A	p.T956T	.	.	.
ELF2	1998	broad.mit.edu	36	4	140201228	140201228	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006874	exon6	c.T677C	p.V226A	.	.	.
MAML3	55534	broad.mit.edu	36	4	141031462	141031462	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018717	exon2	c.G578A	p.R193Q	.	.	.
USP38	84640	broad.mit.edu	36	4	144354217	144354217	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032557	exon9	c.G1638A	p.Q546Q	.	.	.
USP38	84640	broad.mit.edu	36	4	144354490	144354490	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032557	exon9	c.A1911G	p.S637S	.	.	.
POU4F2	5458	broad.mit.edu	36	4	147781172	147781172	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004575	exon2	c.G992A	p.R331H	.	.	.
PET112L	5188	broad.mit.edu	36	4	152820441	152820441	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004564	exon11	c.A1384C	p.T462P	.	.	.
PET112L	5188	broad.mit.edu	36	4	152829357	152829357	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004564	exon10	c.C1206T	p.V402V	.	.	.
FGA	2243	broad.mit.edu	36	4	155727499	155727499	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021871	exon5	c.C532T	p.R178X	.	.	.
FAM198B	51313	broad.mit.edu	36	4	159311281	159311281	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128424	exon2	c.G697A	p.A233T	.	.	.
FNIP2	57600	broad.mit.edu	36	4	160008846	160008846	+	Silent	SNP	C	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020840	exon13	c.C1608G	p.T536T	.	.	.
FSTL5	56884	broad.mit.edu	36	4	163061062	163061062	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020116	exon4	c.C353A	p.A118D	.	.	.
ANP32C	23520	broad.mit.edu	36	4	165337774	165337774	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012403	exon1	c.G540T	p.Q180H	.	.	.
CLCN3	1182	broad.mit.edu	36	4	170877686	170877686	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001829	exon13	c.C2420T	p.T807M	.	.	.
NCAPG	64151	broad.mit.edu	36	4	17445039	17445039	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022346	exon14	c.T1904C	p.V635A	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183950557	183950557	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080477	exon25	c.A5738G	p.N1913S	.	.	.
MLF1IP	79682	broad.mit.edu	36	4	185858999	185858999	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024629	exon11	c.C955T	p.R319C	.	.	.
KIAA1430	57587	broad.mit.edu	36	4	186322251	186322251	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020827	exon4	c.G1397A	p.R466H	.	.	.
KIAA1430	57587	broad.mit.edu	36	4	186348570	186348570	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020827	exon2	c.T775C	p.S259P	.	.	.
GBA3	57733	broad.mit.edu	36	4	22429485	22429485	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128432	exon3	c.G330A	p.W110X	.	.	.
GBA3	57733	broad.mit.edu	36	4	22429629	22429629	+	Silent	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128432	exon3	c.T474G	p.L158L	.	.	.
NOP14	8602	broad.mit.edu	36	4	2919104	2919104	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003703	exon10	c.C1446T	p.G482G	.	.	.
RGS12	6002	broad.mit.edu	36	4	3400210	3400210	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002926	exon16	c.A3539G	p.Q1180R	.	.	.
TBC1D1	23216	broad.mit.edu	36	4	37793950	37793950	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015173	exon16	c.C2782T	p.P928S	.	.	.
TLR1	7096	broad.mit.edu	36	4	38475777	38475777	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003263	exon4	c.T1071C	p.N357N	.	.	.
LIMCH1	22998	broad.mit.edu	36	4	41389149	41389149	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001112720	exon19	c.C2638T	p.R880X	.	.	.
SLC30A9	10463	broad.mit.edu	36	4	41720130	41720130	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006345	exon6	c.T582C	p.R194R	.	.	.
EVC2	132884	broad.mit.edu	36	4	5637306	5637306	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166136	exon17	c.C2762T	p.A921V	.	.	.
EPHA5	2044	broad.mit.edu	36	4	66150507	66150507	+	Silent	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004439	exon3	c.C357A	p.S119S	.	.	.
TMPRSS11A	339967	broad.mit.edu	36	4	68492824	68492824	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182606	exon3	c.A260G	p.Q87R	.	.	.
SULT1B1	27284	broad.mit.edu	36	4	70650093	70650093	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014465	exon4	c.C310T	p.R104W	.	.	.
ENAM	10117	broad.mit.edu	36	4	71727125	71727125	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031889	exon9	c.G1118A	p.R373H	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73395680	73395680	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014243	exon14	c.G2004A	p.T668T	.	.	.
SCARB2	950	broad.mit.edu	36	4	77303469	77303469	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005506	exon11	c.C1331T	p.A444V	.	.	.
SHROOM3	57619	broad.mit.edu	36	4	77879549	77879549	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020859	exon5	c.G1199A	p.R400Q	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79674720	79674720	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025074	exon71	c.G11019T	p.K3673N	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79677319	79677319	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025074	exon72	c.G11239T	p.G3747W	.	.	.
BMP2K	55589	broad.mit.edu	36	4	80051929	80051929	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198892	exon16	c.C3204A	p.P1068P	.	.	.
NUDT9	53343	broad.mit.edu	36	4	88575178	88575178	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024047	exon2	c.G129A	p.W43X	.	.	.
DSPP	1834	broad.mit.edu	36	4	88752803	88752803	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014208	exon4	c.A441G	p.G147G	.	.	.
FAM190A	401145	broad.mit.edu	36	4	91768226	91768226	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145065	exon6	c.C1752T	p.D584D	.	.	.
IDUA	3425	broad.mit.edu	36	4	988096	988096	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000203	exon14	c.G1877A	p.W626X	.	.	.
LARP7	51574	broad.mit.edu	36	4	113790203	113790203	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016648	exon9	c.1206delA	p.L402fs	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153468811	153468811	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018315	exon8	c.1177delA	p.R393fs	.	.	.
C4orf43	55319	broad.mit.edu	36	4	164647735	164647735	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018352	exon2	c.104delA	p.E35fs	.	.	.
KLHL5	51088	broad.mit.edu	36	4	38754080	38754080	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015990	exon2	c.622delA	p.K208fs	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54846306	54846306	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006206	exon17	c.2335delA	p.K779fs	.	.	.
KIAA1211	57482	broad.mit.edu	36	4	56876389	56876389	+	Frame_Shift_Del	DEL	G	-	-	rs7672073	by-cluster,by-frequency,by-hapmap,by-1000genomes	TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020722	exon8	c.1964delG	p.R655fs	.	.	.
GAK	2580	broad.mit.edu	36	4	850923	850923	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005255	exon21	c.2693delC	p.P898fs	.	.	.
ABCG2	9429	broad.mit.edu	36	4	89232419	89232419	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004827	exon16	c.1959delA	p.K653fs	.	.	.
ZMAT1	84460	broad.mit.edu	36	X	101025543	101025543	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011657	exon7	c.A1512C	p.Q504H	.	.	.
ZMAT1	84460	broad.mit.edu	36	X	101025983	101025983	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011657	exon7	c.C1072T	p.H358Y	.	.	.
CLCN4	1183	broad.mit.edu	36	X	10141808	10141808	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001830	exon11	c.C1664T	p.A555V	.	.	.
CLCN4	1183	broad.mit.edu	36	X	10141921	10141921	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001830	exon11	c.C1777T	p.R593C	.	.	.
IL1RAPL2	26280	broad.mit.edu	36	X	104326911	104326911	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017416	exon3	c.C181T	p.R61C	.	.	.
TEX13A	56157	broad.mit.edu	36	X	104351053	104351053	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031274	exon3	c.G481A	p.G161S	.	.	.
COL4A6	1288	broad.mit.edu	36	X	107318498	107318498	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033641	exon21	c.C1492T	p.P498S	.	.	.
COL4A6	1288	broad.mit.edu	36	X	107324973	107324973	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033641	exon15	c.C943T	p.Q315X	.	.	.
DCX	1641	broad.mit.edu	36	X	110442560	110442560	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178153	exon6	c.C992T	p.T331M	.	.	.
DCX	1641	broad.mit.edu	36	X	110540184	110540184	+	Silent	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178153	exon2	c.C99A	p.A33A	.	.	.
DCX	1641	broad.mit.edu	36	X	110540716	110540716	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000555	exon1	c.A143G	p.H48R	.	.	.
LHFPL1	340596	broad.mit.edu	36	X	111801184	111801184	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178175	exon2	c.T91C	p.Y31H	.	.	.
LONRF3	79836	broad.mit.edu	36	X	118035559	118035559	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024778	exon10	c.A2035T	p.M679L	.	.	.
NKRF	55922	broad.mit.edu	36	X	118608932	118608932	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001173487	exon4	c.T529A	p.F177I	.	.	.
CUL4B	8450	broad.mit.edu	36	X	119558368	119558368	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079872	exon11	c.G1521T	p.K507N	.	.	.
MCTS1	28985	broad.mit.edu	36	X	119630089	119630089	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001137554	exon6	c.G491A	p.G164D	.	.	.
XIAP	331	broad.mit.edu	36	X	122847663	122847663	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167	exon2	c.A470G	p.N157S	.	.	.
TLR7	51284	broad.mit.edu	36	X	12815277	12815277	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016562	exon3	c.A1729C	p.S577R	.	.	.
GPC4	2239	broad.mit.edu	36	X	132264689	132264689	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001448	exon9	c.G1543A	p.A515T	.	.	.
CCDC160	347475	broad.mit.edu	36	X	133207310	133207310	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001101357	exon2	c.G814A	p.A272T	.	.	.
MOSPD1	56180	broad.mit.edu	36	X	133850880	133850880	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019556	exon6	c.A619G	p.T207A	.	.	.
ZNF75D	7626	broad.mit.edu	36	X	134252601	134252601	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007131	exon5	c.G823T	p.G275W	.	.	.
DDX26B	203522	broad.mit.edu	36	X	134541386	134541386	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182540	exon15	c.T2016C	p.T672T	.	.	.
SLC9A6	10479	broad.mit.edu	36	X	134895432	134895432	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006359	exon1	c.C105T	p.G35G	.	.	.
EGFL6	25975	broad.mit.edu	36	X	13546027	13546027	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167890	exon8	c.G1036T	p.E346X	.	.	.
ARHGEF6	9459	broad.mit.edu	36	X	135584874	135584874	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004840	exon19	c.G1993A	p.A665T	.	.	.
TCEANC	170082	broad.mit.edu	36	X	13591369	13591369	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152634	exon4	c.C911T	p.T304M	.	.	.
ZIC3	7547	broad.mit.edu	36	X	136477156	136477156	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003413	exon1	c.G640A	p.A214T	.	.	.
MCF2	4168	broad.mit.edu	36	X	138541294	138541294	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099855	exon6	c.G394A	p.D132N	.	.	.
MAGEC3	139081	broad.mit.edu	36	X	140812238	140812238	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177456	exon5	c.C134T	p.S45F	.	.	.
SLITRK4	139065	broad.mit.edu	36	X	142545337	142545337	+	Silent	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173078	exon2	c.A1254T	p.G418G	.	.	.
UBE2NL	389898	broad.mit.edu	36	X	142795032	142795032	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012989	exon1	c.G164A	p.R55H	.	.	.
SLITRK2	84631	broad.mit.edu	36	X	144712540	144712540	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144006	exon3	c.G905A	p.S302N	.	.	.
SLITRK2	84631	broad.mit.edu	36	X	144713163	144713163	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144006	exon3	c.C1528T	p.P510S	.	.	.
FMR1	2332	broad.mit.edu	36	X	146832359	146832359	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001185082	exon13	c.G1229A	p.R410H	.	.	.
MTM1	4534	broad.mit.edu	36	X	149558125	149558125	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000252	exon7	c.G496A	p.V166I	.	.	.
GPR50	9248	broad.mit.edu	36	X	150099279	150099279	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004224	exon2	c.C566G	p.T189S	.	.	.
VMA21	203547	broad.mit.edu	36	X	150324159	150324159	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017980	exon3	c.C277T	p.R93X	.	.	.
PNMA5	114824	broad.mit.edu	36	X	151910786	151910786	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001103150	exon2	c.C13T	p.L5L	.	.	.
AVPR2	554	broad.mit.edu	36	X	152825221	152825221	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000054	exon3	c.A961G	p.N321D	.	.	.
FLNA	2316	broad.mit.edu	36	X	153243844	153243844	+	Silent	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001456	exon18	c.C2616A	p.A872A	.	.	.
NHS	4810	broad.mit.edu	36	X	17660408	17660408	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136024	exon9	c.G4328A	p.R1443Q	.	.	.
RAI2	10742	broad.mit.edu	36	X	17728632	17728632	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172739	exon3	c.G1420A	p.V474M	.	.	.
CDKL5	6792	broad.mit.edu	36	X	18532036	18532036	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003159	exon12	c.C1071T	p.D357D	.	.	.
GPR64	10149	broad.mit.edu	36	X	18938671	18938671	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184837	exon15	c.C1156T	p.L386L	.	.	.
MAP7D2	256714	broad.mit.edu	36	X	19984823	19984823	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168465	exon4	c.T380C	p.L127P	.	.	.
GYG2	8908	broad.mit.edu	36	X	2788030	2788030	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184703	exon8	c.C854T	p.T285M	.	.	.
DCAF8L1	139425	broad.mit.edu	36	X	27908911	27908911	+	Silent	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017930	exon1	c.C462A	p.R154R	.	.	.
MAGEB1	4112	broad.mit.edu	36	X	30179330	30179330	+	Missense_Mutation	SNP	C	T	T	rs7062640	by-cluster,by-frequency,by-hapmap	TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002363	exon4	c.C799T	p.R267C	.	.	.
DMD	1756	broad.mit.edu	36	X	31134685	31134685	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004015	exon5	c.G380A	p.R127H	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3245604	3245604	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015419	exon6	c.C6118T	p.L2040L	.	.	.
SRPX	8406	broad.mit.edu	36	X	37909050	37909050	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006307	exon5	c.G569A	p.R190H	.	.	.
BCOR	54880	broad.mit.edu	36	X	39808586	39808586	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001123383	exon7	c.A3449G	p.E1150G	.	.	.
BCOR	54880	broad.mit.edu	36	X	39818016	39818016	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001123383	exon4	c.G1527T	p.W509C	.	.	.
MED14	9282	broad.mit.edu	36	X	40470942	40470942	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004229	exon3	c.G348A	p.A116A	.	.	.
RGN	9104	broad.mit.edu	36	X	46825537	46825537	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152869	exon3	c.G50A	p.G17D	.	.	.
RBM10	8241	broad.mit.edu	36	X	46924797	46924797	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005676	exon12	c.C1196T	p.A399V	.	.	.
USP11	8237	broad.mit.edu	36	X	46984975	46984975	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004651	exon6	c.G856A	p.A286T	.	.	.
SSX5	6758	broad.mit.edu	36	X	47934560	47934560	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175723	exon6	c.G419A	p.R140H	.	.	.
TIMM17B	10245	broad.mit.edu	36	X	48639078	48639078	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167947	exon3	c.C34T	p.R12X	.	.	.
OTUD5	55593	broad.mit.edu	36	X	48668111	48668111	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136157	exon6	c.C1219T	p.R407W	.	.	.
PPP1R3F	89801	broad.mit.edu	36	X	49029466	49029466	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033215	exon4	c.C1370T	p.A457V	.	.	.
NUDT10	170685	broad.mit.edu	36	X	51092800	51092800	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153183	exon2	c.C243T	p.G81G	.	.	.
MAGED1	9500	broad.mit.edu	36	X	51655012	51655012	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006986	exon3	c.C169T	p.P57S	.	.	.
GNL3L	54552	broad.mit.edu	36	X	54587466	54587466	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019067	exon8	c.G612A	p.Q204Q	.	.	.
UBQLN2	29978	broad.mit.edu	36	X	56607957	56607957	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013444	exon1	c.G926A	p.R309H	.	.	.
EDA2R	60401	broad.mit.edu	36	X	65736066	65736066	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199687	exon6	c.A879G	p.E293E	.	.	.
YIPF6	286451	broad.mit.edu	36	X	67668487	67668487	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195214	exon6	c.G503A	p.R168H	.	.	.
EFNB1	1947	broad.mit.edu	36	X	67975267	67975267	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004429	exon2	c.C211T	p.R71W	.	.	.
KIF4A	24137	broad.mit.edu	36	X	69427071	69427071	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012310	exon2	c.C38T	p.A13V	.	.	.
MED12	9968	broad.mit.edu	36	X	70268147	70268147	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005120	exon29	c.G4070A	p.R1357H	.	.	.
GJB1	2705	broad.mit.edu	36	X	70360284	70360284	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000166	exon2	c.T2C	p.M1T	.	.	.
PHKA1	5255	broad.mit.edu	36	X	71849390	71849390	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172436	exon2	c.G193A	p.A65T	.	.	.
STS	412	broad.mit.edu	36	X	7185329	7185329	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000351	exon3	c.C199T	p.Q67X	.	.	.
MAGEE1	57692	broad.mit.edu	36	X	75565789	75565789	+	Silent	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020932	exon1	c.T1062G	p.T354T	.	.	.
PNPLA4	8228	broad.mit.edu	36	X	7850117	7850117	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004650	exon3	c.A203T	p.K68M	.	.	.
FAM133A	286499	broad.mit.edu	36	X	92851745	92851745	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171110	exon5	c.A671C	p.K224T	.	.	.
SHROOM2	357	broad.mit.edu	36	X	9823199	9823199	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001649	exon4	c.G1251A	p.V417V	.	.	.
PCDH19	57526	broad.mit.edu	36	X	99549593	99549593	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105243	exon1	c.G659A	p.G220D	.	.	.
NRK	203447	broad.mit.edu	36	X	105043392	105043392	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198465	exon14	c.2338delA	p.K780fs	.	.	.
CHRDL1	91851	broad.mit.edu	36	X	109811471	109811471	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143981	exon10	c.1051delG	p.V351fs	.	.	.
MAMLD1	10046	broad.mit.edu	36	X	149388732	149388732	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177466	exon2	c.154delG	p.G52fs	.	.	.
DMD	1756	broad.mit.edu	36	X	31803338	31803338	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004011	exon20	c.2963delA	p.K988fs	.	.	.
UBQLN2	29978	broad.mit.edu	36	X	56608599	56608599	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013444	exon1	c.1568delC	p.A523fs	.	.	.
TEX11	56159	broad.mit.edu	36	X	69815382	69815382	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001003811	exon16	c.1284delT	p.F428fs	.	.	.
IL18R1	8809	broad.mit.edu	36	2	102354945	102354945	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003855	exon3	c.T403A	p.F135I	.	.	.
C2orf49	79074	broad.mit.edu	36	2	105322586	105322586	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024093	exon2	c.A214G	p.K72E	.	.	.
UXS1	80146	broad.mit.edu	36	2	106095647	106095647	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025076	exon10	c.G751A	p.V251M	.	.	.
ST6GAL2	84620	broad.mit.edu	36	2	106789609	106789609	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142351	exon6	c.C1547T	p.A516V	.	.	.
ST6GAL2	84620	broad.mit.edu	36	2	106816954	106816954	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142351	exon3	c.C1024T	p.R342C	.	.	.
SLC20A1	6574	broad.mit.edu	36	2	113133430	113133430	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005415	exon8	c.C1227T	p.D409D	.	.	.
GREB1	9687	broad.mit.edu	36	2	11638309	11638309	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148903	exon7	c.C801T	p.N267N	.	.	.
GREB1	9687	broad.mit.edu	36	2	11675928	11675928	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014668	exon22	c.G3476T	p.R1159M	.	.	.
LPIN1	23175	broad.mit.edu	36	2	11829089	11829089	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145693	exon4	c.C429T	p.S143S	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	124998393	124998393	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130773	exon9	c.C1368T	p.N456N	.	.	.
UGGT1	56886	broad.mit.edu	36	2	128587259	128587259	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020120	exon6	c.G653C	p.S218T	.	.	.
POTEF	728378	broad.mit.edu	36	2	130594532	130594532	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099771	exon3	c.G27A	p.P9P	.	.	.
TUBA3E	112714	broad.mit.edu	36	2	130669129	130669129	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207312	exon3	c.G368A	p.R123H	.	.	.
CCDC74A	90557	broad.mit.edu	36	2	132006810	132006810	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138770	exon5	c.C862A	p.L288M	.	.	.
GPR39	2863	broad.mit.edu	36	2	132891574	132891574	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001508	exon1	c.C489T	p.S163S	.	.	.
GPR39	2863	broad.mit.edu	36	2	132891877	132891877	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001508	exon1	c.G792A	p.P264P	.	.	.
TMEM163	81615	broad.mit.edu	36	2	134932100	134932100	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030923	exon7	c.G782A	p.G261D	.	.	.
SPOPL	339745	broad.mit.edu	36	2	139024542	139024542	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001664	exon3	c.C98T	p.S33F	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140961693	140961693	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018557	exon58	c.G9206A	p.R3069H	.	.	.
LRP1B	53353	broad.mit.edu	36	2	142604705	142604705	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018557	exon1	c.A64G	p.T22A	.	.	.
ARHGAP15	55843	broad.mit.edu	36	2	143909694	143909694	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018460	exon7	c.A529G	p.I177V	.	.	.
MBD5	55777	broad.mit.edu	36	2	148943438	148943438	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018328	exon9	c.A1456G	p.I486V	.	.	.
NEB	4703	broad.mit.edu	36	2	152119734	152119734	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164507	exon125	c.C19385T	p.P6462L	.	.	.
CACNB4	785	broad.mit.edu	36	2	152435309	152435309	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145798	exon8	c.G681A	p.P227P	.	.	.
ERMN	57471	broad.mit.edu	36	2	157890408	157890408	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009959	exon2	c.C32T	p.P11L	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166764421	166764421	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002977	exon27	c.C4941T	p.Y1647Y	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167808459	167808459	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199144	exon7	c.C1645T	p.R549W	.	.	.
ABCB11	8647	broad.mit.edu	36	2	169497263	169497263	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003742	exon24	c.C3083T	p.A1028V	.	.	.
LRP2	4036	broad.mit.edu	36	2	169839974	169839974	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004525	exon14	c.G1793A	p.G598D	.	.	.
PPIG	9360	broad.mit.edu	36	2	170201298	170201298	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004792	exon14	c.C1284T	p.D428D	.	.	.
DCAF17	80067	broad.mit.edu	36	2	172008313	172008313	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025000	exon3	c.C265T	p.P89S	.	.	.
SLC25A12	8604	broad.mit.edu	36	2	172399603	172399603	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003705	exon7	c.T631G	p.S211A	.	.	.
HAT1	8520	broad.mit.edu	36	2	172556424	172556424	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003642	exon11	c.T1172C	p.I391T	.	.	.
WIPF1	7456	broad.mit.edu	36	2	175140128	175140128	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077269	exon7	c.C1372G	p.P458A	.	.	.
MTX2	10651	broad.mit.edu	36	2	176903632	176903632	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006554	exon9	c.G618A	p.K206K	.	.	.
HNRNPA3	220988	broad.mit.edu	36	2	177790816	177790816	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194247	exon8	c.G958A	p.G320S	.	.	.
TTC30A	92104	broad.mit.edu	36	2	178191288	178191288	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152275	exon1	c.C388T	p.P130S	.	.	.
TTN	7273	broad.mit.edu	36	2	179105066	179105066	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon186	c.G77326A	p.A25776T	.	.	.
TTN	7273	broad.mit.edu	36	2	179105817	179105817	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon186	c.C76575T	p.N25525N	.	.	.
TTN	7273	broad.mit.edu	36	2	179110719	179110719	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon183	c.G72265A	p.A24089T	.	.	.
TTN	7273	broad.mit.edu	36	2	179134370	179134370	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.A57539G	p.N19180S	.	.	.
TTN	7273	broad.mit.edu	36	2	179137459	179137459	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.C54450T	p.A18150A	.	.	.
TTN	7273	broad.mit.edu	36	2	179160717	179160717	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon134	c.G36369T	p.Q12123H	.	.	.
TTN	7273	broad.mit.edu	36	2	179164475	179164475	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon132	c.C33027T	p.C11009C	.	.	.
TTN	7273	broad.mit.edu	36	2	179174385	179174385	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon115	c.A28389G	p.K9463K	.	.	.
CWC22	57703	broad.mit.edu	36	2	180523521	180523521	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020943	exon19	c.C2103T	p.S701S	.	.	.
NAB1	4664	broad.mit.edu	36	2	191258529	191258529	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005966	exon8	c.G1178T	p.R393M	.	.	.
MYO1B	4430	broad.mit.edu	36	2	191963370	191963370	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012223	exon18	c.C1889T	p.A630V	.	.	.
HECW2	57520	broad.mit.edu	36	2	196880907	196880907	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020760	exon11	c.G2582A	p.R861Q	.	.	.
SF3B1	23451	broad.mit.edu	36	2	197975054	197975054	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012433	exon15	c.C2123T	p.A708V	.	.	.
BMPR2	659	broad.mit.edu	36	2	203093163	203093163	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001204	exon7	c.C961T	p.R321X	.	.	.
CYP20A1	57404	broad.mit.edu	36	2	203869742	203869742	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177538	exon13	c.A1255G	p.T419A	.	.	.
PLEKHM3	389072	broad.mit.edu	36	2	208519426	208519426	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080475	exon4	c.T1602C	p.S534S	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208923769	208923769	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015040	exon37	c.T5464G	p.C1822G	.	.	.
CPS1	1373	broad.mit.edu	36	2	211231599	211231599	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122634	exon21	c.C2345A	p.A782D	.	.	.
BARD1	580	broad.mit.edu	36	2	215354296	215354296	+	Missense_Mutation	SNP	C	G	G	rs67232351	unknown	TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000465	exon4	c.G547C	p.V183L	.	.	.
ATIC	471	broad.mit.edu	36	2	215922534	215922534	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004044	exon16	c.G1690A	p.G564S	.	.	.
FN1	2335	broad.mit.edu	36	2	215957091	215957091	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_212476	exon29	c.C4518T	p.S1506S	.	.	.
TNS1	7145	broad.mit.edu	36	2	218386756	218386756	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022648	exon26	c.G4446A	p.P1482P	.	.	.
PLCD4	84812	broad.mit.edu	36	2	219206724	219206724	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032726	exon11	c.G1602T	p.E534D	.	.	.
ANKZF1	55139	broad.mit.edu	36	2	219808719	219808719	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042410	exon12	c.C1849T	p.R617W	.	.	.
CCDC140	151278	broad.mit.edu	36	2	222876972	222876972	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153038	exon2	c.G107A	p.R36H	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225429908	225429908	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014689	exon15	c.G1721T	p.R574I	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225447645	225447645	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014689	exon9	c.A999G	p.L333L	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226086611	226086611	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020864	exon3	c.A502G	p.K168E	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226155224	226155224	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020864	exon4	c.G847A	p.A283T	.	.	.
RHBDD1	84236	broad.mit.edu	36	2	227487277	227487277	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167608	exon8	c.C822T	p.L274L	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230366057	230366057	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004238	exon26	c.T3792C	p.H1264H	.	.	.
SP110	3431	broad.mit.edu	36	2	230785844	230785844	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004510	exon4	c.G459A	p.A153A	.	.	.
B3GNT7	93010	broad.mit.edu	36	2	231971234	231971234	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145236	exon2	c.C560T	p.T187M	.	.	.
GIGYF2	26058	broad.mit.edu	36	2	233389976	233389976	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001103148	exon19	c.G2342A	p.R781Q	.	.	.
GIGYF2	26058	broad.mit.edu	36	2	233429799	233429799	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001103148	exon28	c.G3867A	p.T1289T	.	.	.
C2orf44	80304	broad.mit.edu	36	2	24114872	24114872	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025203	exon2	c.A997G	p.K333E	.	.	.
AQP12A	375318	broad.mit.edu	36	2	241280071	241280071	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198998	exon1	c.G68A	p.R23Q	.	.	.
OTOF	9381	broad.mit.edu	36	2	26578788	26578788	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194248	exon7	c.G594T	p.A198A	.	.	.
TCF23	150921	broad.mit.edu	36	2	27226671	27226671	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175769	exon2	c.C399T	p.G133G	.	.	.
SLC5A6	8884	broad.mit.edu	36	2	27281181	27281181	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021095	exon8	c.C857T	p.T286M	.	.	.
CAD	790	broad.mit.edu	36	2	27308466	27308466	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004341	exon17	c.C2515T	p.R839X	.	.	.
GTF3C2	2976	broad.mit.edu	36	2	27404534	27404534	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001035521	exon17	c.G2283A	p.P761P	.	.	.
SNX17	9784	broad.mit.edu	36	2	27449013	27449013	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014748	exon3	c.C158T	p.A53V	.	.	.
FOSL2	2355	broad.mit.edu	36	2	28488301	28488301	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005253	exon4	c.G463T	p.E155X	.	.	.
EHD3	30845	broad.mit.edu	36	2	31320753	31320753	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014600	exon2	c.G337A	p.A113T	.	.	.
DPY30	84661	broad.mit.edu	36	2	32117875	32117875	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032574	exon3	c.T61C	p.Y21H	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32593698	32593698	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016252	exon55	c.C10706A	p.P3569H	.	.	.
TTC27	55622	broad.mit.edu	36	2	32781475	32781475	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193509	exon10	c.C1067T	p.A356V	.	.	.
FAM98A	25940	broad.mit.edu	36	2	33663920	33663920	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015475	exon8	c.C984T	p.G328G	.	.	.
DHX57	90957	broad.mit.edu	36	2	38944022	38944022	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198963	exon3	c.C368T	p.A123V	.	.	.
SLC8A1	6546	broad.mit.edu	36	2	40196016	40196016	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001112800	exon9	c.G2788T	p.G930C	.	.	.
OXER1	165140	broad.mit.edu	36	2	42843781	42843781	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148962	exon1	c.G1043A	p.S348N	.	.	.
C2orf34	79823	broad.mit.edu	36	2	44847097	44847097	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024766	exon10	c.C787T	p.R263C	.	.	.
TTC7A	57217	broad.mit.edu	36	2	47086687	47086687	+	De_novo_Start_InFrame	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020458	exon9	c.C1188T	p.Y396Y	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48661301	48661301	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198594	exon1	c.T25C	p.W9R	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48701502	48701502	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006872	exon2	c.C30A	p.L10L	.	.	.
ASB3	51130	broad.mit.edu	36	2	53751240	53751240	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016115	exon10	c.G1461A	p.Q487Q	.	.	.
PSME4	23198	broad.mit.edu	36	2	53968624	53968624	+	Silent	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014614	exon39	c.T4395G	p.L1465L	.	.	.
EFEMP1	2202	broad.mit.edu	36	2	55955657	55955657	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039348	exon9	c.G928A	p.V310I	.	.	.
VRK2	7444	broad.mit.edu	36	2	58166996	58166996	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130483	exon5	c.G275A	p.R92H	.	.	.
BCL11A	53335	broad.mit.edu	36	2	60542942	60542942	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138559	exon4	c.C609T	p.H203H	.	.	.
SPRED2	200734	broad.mit.edu	36	2	65394294	65394294	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181784	exon6	c.G1102A	p.D368N	.	.	.
DYSF	8291	broad.mit.edu	36	2	71619800	71619800	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130982	exon17	c.G1499A	p.R500H	.	.	.
DYSF	8291	broad.mit.edu	36	2	71691976	71691976	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130982	exon38	c.G4093A	p.A1365T	.	.	.
CCT7	10574	broad.mit.edu	36	2	73325243	73325243	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166285	exon7	c.G378A	p.Q126Q	.	.	.
EGR4	1961	broad.mit.edu	36	2	73372339	73372339	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001965	exon2	c.G1524A	p.T508T	.	.	.
ACTG2	72	broad.mit.edu	36	2	73981972	73981972	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001615	exon2	c.T26C	p.L9P	.	.	.
LRRTM4	80059	broad.mit.edu	36	2	77599778	77599778	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024993	exon3	c.G725A	p.R242H	.	.	.
CTNNA2	1496	broad.mit.edu	36	2	79954944	79954944	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004389	exon6	c.G820A	p.G274S	.	.	.
MRPS5	64969	broad.mit.edu	36	2	95134151	95134151	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031902	exon7	c.C724T	p.R242C	.	.	.
ZNF514	84874	broad.mit.edu	36	2	95179054	95179054	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032788	exon5	c.A903G	p.S301S	.	.	.
TMEM127	55654	broad.mit.edu	36	2	96284314	96284314	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017849	exon3	c.C393T	p.F131F	.	.	.
NCAPH	23397	broad.mit.edu	36	2	96373607	96373607	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015341	exon6	c.T633C	p.A211A	.	.	.
TMEM131	23505	broad.mit.edu	36	2	97743516	97743516	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015348	exon38	c.G5080A	p.A1694T	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133259501	133259501	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207363	exon14	c.1353delC	p.P451fs	.	.	.
TTN	7273	broad.mit.edu	36	2	179194307	179194307	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon74	c.18188delA	p.N6063fs	.	.	.
TTN	7273	broad.mit.edu	36	2	179245016	179245016	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133378	exon150	c.31251delA	p.K10417fs	.	.	.
OSGEPL1	64172	broad.mit.edu	36	2	190334576	190334576	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022353	exon2	c.36delT	p.F12fs	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196430566	196430566	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018897	exon44	c.8194delA	p.I2732fs	.	.	.
PGAP1	80055	broad.mit.edu	36	2	197465345	197465346	+	Frame_Shift_Del	DEL	TT	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024989	exon9	c.1058_1059del	p.353_353del	.	.	.
MATN3	4148	broad.mit.edu	36	2	20063692	20063692	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002381	exon5	c.1159delA	p.T387fs	.	.	.
ABCB6	10058	broad.mit.edu	36	2	219789347	219789347	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005689	exon4	c.953delG	p.G318fs	.	.	.
PSMD1	5707	broad.mit.edu	36	2	231639924	231639924	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002807	exon5	c.365delA	p.E122fs	.	.	.
RBM44	375316	broad.mit.edu	36	2	238390716	238390716	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080504	exon3	c.418delA	p.K140fs	.	.	.
POMC	5443	broad.mit.edu	36	2	25237491	25237491	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001035256	exon4	c.767delA	p.N256fs	.	.	.
DNMT3A	1788	broad.mit.edu	36	2	25358935	25358935	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175629	exon4	c.327delG	p.G109fs	.	.	.
LRPPRC	10128	broad.mit.edu	36	2	44044287	44044288	+	Frame_Shift_Del	DEL	TA	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133259	exon12	c.1431_1432del	p.477_478del	.	.	.
EHBP1	23301	broad.mit.edu	36	2	63059856	63059857	+	Frame_Shift_Del	DEL	GA	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142614	exon14	c.2490_2491del	p.830_831del	.	.	.
LBX2	85474	broad.mit.edu	36	2	74583448	74583448	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009812	exon1	c.47delG	p.G16fs	.	.	.
CNGA3	1261	broad.mit.edu	36	2	98379445	98379445	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001298	exon8	c.1380delC	p.L460fs	.	.	.
GRIN3A	116443	broad.mit.edu	36	9	103415581	103415581	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133445	exon6	c.C2664T	p.S888S	.	.	.
SLC44A1	23446	broad.mit.edu	36	9	107111873	107111873	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080546	exon3	c.A174G	p.L58L	.	.	.
RAD23B	5887	broad.mit.edu	36	9	109120929	109120929	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002874	exon6	c.C629T	p.A210V	.	.	.
C9orf5	23731	broad.mit.edu	36	9	110852703	110852703	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032012	exon13	c.G1945A	p.G649R	.	.	.
ZNF483	158399	broad.mit.edu	36	9	113345192	113345192	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133464	exon6	c.A2156G	p.Y719C	.	.	.
FKBP15	23307	broad.mit.edu	36	9	114971836	114971836	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015258	exon26	c.G2974A	p.V992I	.	.	.
FKBP15	23307	broad.mit.edu	36	9	114976657	114976657	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015258	exon22	c.G2251A	p.A751T	.	.	.
DBC1	1620	broad.mit.edu	36	9	121016110	121016110	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014618	exon6	c.A830C	p.N277T	.	.	.
PHF19	26147	broad.mit.edu	36	9	122676772	122676772	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015651	exon2	c.G69A	p.K23K	.	.	.
GSN	2934	broad.mit.edu	36	9	123134588	123134588	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127664	exon19	c.C2082A	p.T694T	.	.	.
OR1Q1	158131	broad.mit.edu	36	9	124417488	124417488	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012364	exon1	c.C651A	p.S217S	.	.	.
RABGAP1	23637	broad.mit.edu	36	9	124872508	124872508	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012197	exon15	c.C1967T	p.A656V	.	.	.
OLFML2A	169611	broad.mit.edu	36	9	126589171	126589171	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182487	exon2	c.C187T	p.R63X	.	.	.
PPP6C	5537	broad.mit.edu	36	9	126951788	126951788	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001123369	exon6	c.G837A	p.T279T	.	.	.
C9orf150	286343	broad.mit.edu	36	9	12811484	12811484	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203403	exon2	c.A412G	p.I138V	.	.	.
LMX1B	4010	broad.mit.edu	36	9	128495253	128495253	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002316	exon4	c.G571T	p.D191Y	.	.	.
FAM129B	64855	broad.mit.edu	36	9	129333800	129333800	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022833	exon2	c.G134A	p.R45H	.	.	.
SPTAN1	6709	broad.mit.edu	36	9	130410296	130410296	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195532	exon33	c.G4351A	p.E1451K	.	.	.
PKN3	29941	broad.mit.edu	36	9	130520701	130520701	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013355	exon18	c.G2101A	p.A701T	.	.	.
LRRC8A	56262	broad.mit.edu	36	9	130710522	130710522	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019594	exon3	c.C1258T	p.L420F	.	.	.
C9orf50	375759	broad.mit.edu	36	9	131421666	131421666	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199350	exon3	c.C670A	p.L224M	.	.	.
METTL11A	28989	broad.mit.edu	36	9	131436195	131436195	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014064	exon3	c.T204C	p.C68C	.	.	.
LAMC3	10319	broad.mit.edu	36	9	132933435	132933435	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006059	exon15	c.C2743T	p.R915W	.	.	.
GTF3C5	9328	broad.mit.edu	36	9	134916149	134916149	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122823	exon4	c.A731G	p.N244S	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136851810	136851810	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000093	exon58	c.G4474A	p.G1492S	.	.	.
KIAA0649	9858	broad.mit.edu	36	9	137517365	137517365	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014811	exon4	c.G1188T	p.E396D	.	.	.
UBAC1	10422	broad.mit.edu	36	9	137971426	137971426	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016172	exon8	c.G877A	p.A293T	.	.	.
COBRA1	25920	broad.mit.edu	36	9	139277401	139277401	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015456	exon5	c.G689A	p.R230Q	.	.	.
EHMT1	79813	broad.mit.edu	36	9	139832403	139832403	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024757	exon25	c.G3532A	p.D1178N	.	.	.
FREM1	158326	broad.mit.edu	36	9	14832520	14832520	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144966	exon10	c.C1532A	p.P511H	.	.	.
DENND4C	55667	broad.mit.edu	36	9	19332693	19332693	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017925	exon17	c.C2212T	p.P738S	.	.	.
IFNA2	3440	broad.mit.edu	36	9	21374902	21374902	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000605	exon1	c.A427G	p.R143G	.	.	.
KIAA1161	57462	broad.mit.edu	36	9	34361529	34361529	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020702	exon2	c.G1413A	p.P471P	.	.	.
KIAA1161	57462	broad.mit.edu	36	9	34361720	34361720	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020702	exon2	c.C1222T	p.R408C	.	.	.
KIAA1045	23349	broad.mit.edu	36	9	34961556	34961556	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015297	exon2	c.C261T	p.G87G	.	.	.
TESK1	7016	broad.mit.edu	36	9	35596966	35596966	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006285	exon4	c.G523A	p.D175N	.	.	.
CD72	971	broad.mit.edu	36	9	35601807	35601807	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001782	exon7	c.G944A	p.R315H	.	.	.
TLN1	7094	broad.mit.edu	36	9	35702990	35702990	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006289	exon27	c.G3403A	p.A1135T	.	.	.
CCIN	881	broad.mit.edu	36	9	36161259	36161259	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005893	exon1	c.G1760T	p.R587M	.	.	.
GNE	10020	broad.mit.edu	36	9	36207509	36207509	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128227	exon12	c.C2115T	p.H705H	.	.	.
FBXO10	26267	broad.mit.edu	36	9	37527870	37527870	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012166	exon3	c.G656A	p.G219D	.	.	.
GLIS3	169792	broad.mit.edu	36	9	4108781	4108781	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152629	exon3	c.G232T	p.A78S	.	.	.
GLDC	2731	broad.mit.edu	36	9	6546173	6546173	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000170	exon18	c.G2182A	p.G728R	.	.	.
KANK1	23189	broad.mit.edu	36	9	702566	702566	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153186	exon2	c.C1326T	p.C442C	.	.	.
SMC5	23137	broad.mit.edu	36	9	72123667	72123667	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015110	exon15	c.A2118C	p.Q706H	.	.	.
TRPM3	80036	broad.mit.edu	36	9	72423679	72423679	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007471	exon16	c.C2246T	p.A749V	.	.	.
C9orf85	138241	broad.mit.edu	36	9	73716489	73716489	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182505	exon1	c.A19G	p.N7D	.	.	.
C9orf41	138199	broad.mit.edu	36	9	76788519	76788519	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152420	exon8	c.T1214C	p.V405A	.	.	.
GCNT1	2650	broad.mit.edu	36	9	78307472	78307472	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001097635	exon3	c.G355A	p.A119T	.	.	.
GCNT1	2650	broad.mit.edu	36	9	78307711	78307711	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001097635	exon3	c.C594A	p.N198K	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78449495	78449495	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015225	exon12	c.G8708T	p.R2903M	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78509845	78509845	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015225	exon8	c.C7165A	p.L2389M	.	.	.
PSAT1	29968	broad.mit.edu	36	9	80113157	80113157	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058179	exon6	c.T578C	p.V193A	.	.	.
UBQLN1	29979	broad.mit.edu	36	9	85482538	85482538	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053067	exon6	c.T1029C	p.G343G	.	.	.
C9orf64	84267	broad.mit.edu	36	9	85760203	85760203	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032307	exon2	c.C510T	p.C170C	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89454707	89454707	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004938	exon16	c.G1480A	p.A494T	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89692834	89692834	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178828	exon4	c.C3612T	p.G1204G	.	.	.
SEMA4D	10507	broad.mit.edu	36	9	91168673	91168673	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142287	exon19	c.T1895C	p.I632T	.	.	.
NFIL3	4783	broad.mit.edu	36	9	93212566	93212566	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005384	exon2	c.G272A	p.R91H	.	.	.
OGN	4969	broad.mit.edu	36	9	94205468	94205468	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014057	exon2	c.C43T	p.P15S	.	.	.
WNK2	65268	broad.mit.edu	36	9	95091527	95091527	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006648	exon19	c.G4670A	p.R1557Q	.	.	.
PTPDC1	138639	broad.mit.edu	36	9	95886818	95886818	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152422	exon1	c.C185T	p.A62V	.	.	.
CORO2A	7464	broad.mit.edu	36	9	99936981	99936981	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003389	exon4	c.G396A	p.A132A	.	.	.
OR1J4	26219	broad.mit.edu	36	9	124321546	124321546	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004452	exon1	c.306delT	p.Y102fs	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32621885	32621885	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153809	exon1	c.3693delT	p.F1231fs	.	.	.
KIF24	347240	broad.mit.edu	36	9	34247623	34247623	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194313	exon11	c.1982delA	p.K661fs	.	.	.
PIGO	84720	broad.mit.edu	36	9	35081693	35081693	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032634	exon7	c.2191delC	p.R731fs	.	.	.
CREB3	10488	broad.mit.edu	36	9	35723041	35723041	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006368	exon2	c.178delC	p.P60fs	.	.	.
MYO16	23026	broad.mit.edu	36	13	108577805	108577805	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198950	exon31	c.G3957A	p.P1319P	.	.	.
COL4A1	1282	broad.mit.edu	36	13	109616595	109616595	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001845	exon45	c.G4006A	p.V1336I	.	.	.
COL4A2	1284	broad.mit.edu	36	13	109954252	109954252	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001846	exon44	c.T4196C	p.V1399A	.	.	.
CARS2	79587	broad.mit.edu	36	13	110155872	110155872	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024537	exon2	c.C272A	p.A91D	.	.	.
MCF2L	23263	broad.mit.edu	36	13	112792041	112792041	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024979	exon26	c.A2963G	p.K988R	.	.	.
SPATA13	221178	broad.mit.edu	36	13	23761160	23761160	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166271	exon8	c.G2691A	p.K897K	.	.	.
ATP12A	479	broad.mit.edu	36	13	24170901	24170901	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001185085	exon12	c.G1636A	p.G546S	.	.	.
CENPJ	55835	broad.mit.edu	36	13	24355330	24355330	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018451	exon17	c.G4002T	p.M1334I	.	.	.
FAM123A	219287	broad.mit.edu	36	13	24642073	24642073	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152704	exon1	c.C1685T	p.P562L	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25171408	25171408	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016529	exon25	c.A2309C	p.K770T	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25247060	25247060	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016529	exon27	c.A2642G	p.Y881C	.	.	.
GPR12	2835	broad.mit.edu	36	13	26231613	26231613	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005288	exon2	c.G352A	p.G118S	.	.	.
PDS5B	23047	broad.mit.edu	36	13	32225626	32225626	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015032	exon25	c.A2893G	p.N965D	.	.	.
KL	9365	broad.mit.edu	36	13	32533103	32533103	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004795	exon4	c.C1887T	p.V629V	.	.	.
SOHLH2	54937	broad.mit.edu	36	13	35646935	35646935	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017826	exon7	c.C713T	p.A238V	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37218306	37218306	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135957	exon3	c.A665G	p.Q222R	.	.	.
FREM2	341640	broad.mit.edu	36	13	38161381	38161381	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207361	exon1	c.G1900A	p.A634T	.	.	.
MED4	29079	broad.mit.edu	36	13	47553811	47553811	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014166	exon5	c.C479A	p.A160D	.	.	.
CDADC1	81602	broad.mit.edu	36	13	48746471	48746471	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030911	exon6	c.G1044A	p.G348G	.	.	.
FAM124A	220108	broad.mit.edu	36	13	50752855	50752855	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145019	exon5	c.C1211T	p.T404M	.	.	.
CKAP2	26586	broad.mit.edu	36	13	51947043	51947043	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098525	exon9	c.G1818A	p.K606K	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57105251	57105251	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040429	exon1	c.C570A	p.T190T	.	.	.
PCDH20	64881	broad.mit.edu	36	13	60884526	60884526	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022843	exon2	c.A1707C	p.Q569H	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66103437	66103437	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020403	exon3	c.C3144T	p.H1048H	.	.	.
TBC1D4	9882	broad.mit.edu	36	13	74771656	74771656	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014832	exon17	c.G2967T	p.L989L	.	.	.
LMO7	4008	broad.mit.edu	36	13	75306488	75306488	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015842	exon14	c.C2491T	p.H831Y	.	.	.
LMO7	4008	broad.mit.edu	36	13	75313259	75313259	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015842	exon20	c.G2897A	p.R966H	.	.	.
STK24	8428	broad.mit.edu	36	13	97916655	97916655	+	Silent	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003576	exon6	c.C795A	p.A265A	.	.	.
GPR183	1880	broad.mit.edu	36	13	98746042	98746042	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004951	exon2	c.A359G	p.N120S	.	.	.
CLYBL	171425	broad.mit.edu	36	13	99341591	99341591	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206808	exon8	c.G946T	p.G316W	.	.	.
LOXL4	84171	broad.mit.edu	36	10	100012761	100012761	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032211	exon2	c.G6A	p.A2A	.	.	.
DNMBP	23268	broad.mit.edu	36	10	101649786	101649786	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015221	exon7	c.A2582G	p.E861G	.	.	.
SEMA4G	57715	broad.mit.edu	36	10	102727400	102727400	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017893	exon4	c.C358T	p.R120W	.	.	.
GTPBP4	23560	broad.mit.edu	36	10	1031911	1031911	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012341	exon3	c.G262A	p.D88N	.	.	.
LDB1	8861	broad.mit.edu	36	10	103858796	103858796	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113407	exon10	c.G985A	p.A329T	.	.	.
NOLC1	9221	broad.mit.edu	36	10	103910352	103910352	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004741	exon10	c.C1253T	p.T418M	.	.	.
SFXN2	118980	broad.mit.edu	36	10	104476484	104476484	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178858	exon2	c.G101A	p.R34H	.	.	.
PDCD11	22984	broad.mit.edu	36	10	105184582	105184582	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014976	exon25	c.C3705T	p.G1235G	.	.	.
PDCD11	22984	broad.mit.edu	36	10	105187779	105187779	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014976	exon26	c.C3863T	p.T1288I	.	.	.
C10orf79	80217	broad.mit.edu	36	10	105893301	105893301	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025145	exon32	c.C4031T	p.A1344V	.	.	.
SORCS3	22986	broad.mit.edu	36	10	107012199	107012199	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014978	exon26	c.T3564C	p.P1188P	.	.	.
SORCS1	114815	broad.mit.edu	36	10	108913826	108913826	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052918	exon1	c.C449A	p.A150D	.	.	.
CELF2	10659	broad.mit.edu	36	10	11247493	11247493	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025077	exon2	c.A92G	p.H31R	.	.	.
VWA2	340706	broad.mit.edu	36	10	116036084	116036084	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198496	exon11	c.C1394T	p.A465V	.	.	.
USP6NL	9712	broad.mit.edu	36	10	11609538	11609538	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014688	exon3	c.G39A	p.Q13Q	.	.	.
PNLIPRP3	119548	broad.mit.edu	36	10	118210547	118210547	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011709	exon6	c.C645T	p.D215D	.	.	.
PNLIPRP3	119548	broad.mit.edu	36	10	118226162	118226162	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011709	exon11	c.T1181G	p.L394R	.	.	.
SEC61A2	55176	broad.mit.edu	36	10	12242956	12242956	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142627	exon10	c.G997A	p.A333T	.	.	.
WDR11	55717	broad.mit.edu	36	10	122639434	122639434	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018117	exon18	c.C2266T	p.R756C	.	.	.
MCM10	55388	broad.mit.edu	36	10	13257619	13257619	+	Silent	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018518	exon6	c.G696T	p.G232G	.	.	.
MCM10	55388	broad.mit.edu	36	10	13291105	13291105	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018518	exon19	c.G2507A	p.G836D	.	.	.
BNIP3	664	broad.mit.edu	36	10	133632042	133632042	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004052	exon6	c.G561T	p.L187L	.	.	.
KNDC1	85442	broad.mit.edu	36	10	134865084	134865084	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152643	exon17	c.C3079T	p.R1027W	.	.	.
FRMD4A	55691	broad.mit.edu	36	10	13742344	13742344	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018027	exon20	c.C1876T	p.R626C	.	.	.
CUBN	8029	broad.mit.edu	36	10	16982808	16982808	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081	exon53	c.G8232T	p.W2744C	.	.	.
TRDMT1	1787	broad.mit.edu	36	10	17235528	17235528	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004412	exon10	c.A1059G	p.G353G	.	.	.
SPAG6	9576	broad.mit.edu	36	10	22739991	22739991	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012443	exon10	c.G1340A	p.R447Q	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24850776	24850776	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019590	exon12	c.G2368A	p.V790M	.	.	.
PDSS1	23590	broad.mit.edu	36	10	27075298	27075298	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014317	exon12	c.G1138A	p.A380T	.	.	.
ANKRD26	22852	broad.mit.edu	36	10	27368941	27368941	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014915	exon21	c.G2334A	p.E778E	.	.	.
MASTL	84930	broad.mit.edu	36	10	27494092	27494092	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172303	exon5	c.G647T	p.S216I	.	.	.
RAB18	22931	broad.mit.edu	36	10	27855796	27855796	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021252	exon3	c.A158G	p.D53G	.	.	.
MKX	283078	broad.mit.edu	36	10	28064170	28064170	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173576	exon4	c.A488T	p.D163V	.	.	.
ARMC4	55130	broad.mit.edu	36	10	28189716	28189716	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018076	exon19	c.T2865C	p.N955N	.	.	.
LYZL1	84569	broad.mit.edu	36	10	29621602	29621602	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032517	exon3	c.C426T	p.V142V	.	.	.
SVIL	6840	broad.mit.edu	36	10	29862207	29862207	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021738	exon8	c.T1095C	p.R365R	.	.	.
ZEB1	6935	broad.mit.edu	36	10	31855677	31855677	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174093	exon8	c.C2794T	p.R932X	.	.	.
ITGB1	3688	broad.mit.edu	36	10	33261467	33261467	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133376	exon3	c.T135C	p.C45C	.	.	.
RET	5979	broad.mit.edu	36	10	42924539	42924539	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020975	exon6	c.C1118T	p.A373V	RET,ovary,NS,Substitution - coding silent,-1	.	.
GDF2	2658	broad.mit.edu	36	10	48033590	48033590	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016204	exon2	c.C1284T	p.C428C	.	.	.
ANK3	288	broad.mit.edu	36	10	61501949	61501949	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020987	exon37	c.C8696T	p.S2899F	.	.	.
ANK3	288	broad.mit.edu	36	10	61709367	61709367	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020987	exon2	c.G151T	p.A51S	.	.	.
EGR2	1959	broad.mit.edu	36	10	64243274	64243274	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000399	exon2	c.G1130A	p.R377H	.	.	.
JMJD1C	221037	broad.mit.edu	36	10	64623127	64623127	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004241	exon12	c.T5189C	p.M1730T	.	.	.
SIRT1	23411	broad.mit.edu	36	10	69342729	69342729	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142498	exon7	c.C965T	p.A322V	.	.	.
MYPN	84665	broad.mit.edu	36	10	69627219	69627219	+	Missense_Mutation	SNP	G	A	A	rs71584501	unknown	TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032578	exon16	c.G3263A	p.R1088H	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7254517	7254517	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029880	exon18	c.C2097T	p.F699F	.	.	.
UNC5B	219699	broad.mit.edu	36	10	72714517	72714517	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170744	exon3	c.G339A	p.S113S	.	.	.
MRPS16	51021	broad.mit.edu	36	10	74680664	74680664	+	Silent	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016065	exon3	c.T366A	p.S122S	.	.	.
USP54	159195	broad.mit.edu	36	10	74946691	74946691	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152586	exon18	c.G3499A	p.D1167N	.	.	.
KIAA0913	23053	broad.mit.edu	36	10	75227181	75227181	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015037	exon18	c.G3474A	p.S1158S	.	.	.
PLAU	5328	broad.mit.edu	36	10	75345135	75345135	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002658	exon10	c.A1091G	p.D364G	.	.	.
ITIH5	80760	broad.mit.edu	36	10	7645147	7645147	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030569	exon14	c.G2734A	p.A912T	.	.	.
ITIH2	3698	broad.mit.edu	36	10	7809673	7809673	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002216	exon11	c.C1155T	p.G385G	.	.	.
DLG5	9231	broad.mit.edu	36	10	79271767	79271767	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004747	exon7	c.C1315T	p.R439C	.	.	.
TUBB8	347688	broad.mit.edu	36	10	84002	84002	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164154	exon4	c.G114T	p.A38A	.	.	.
GRID1	2894	broad.mit.edu	36	10	87888585	87888585	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017551	exon4	c.C697A	p.P233T	.	.	.
LARP4B	23185	broad.mit.edu	36	10	878986	878986	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015155	exon6	c.T532C	p.Y178H	.	.	.
OPN4	94233	broad.mit.edu	36	10	88408242	88408242	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001030015	exon5	c.G479A	p.C160Y	.	.	.
GLUD1	2746	broad.mit.edu	36	10	88803090	88803090	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005271	exon12	c.C1546T	p.R516C	.	.	.
STAMBPL1	57559	broad.mit.edu	36	10	90658483	90658483	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020799	exon4	c.G293A	p.C98Y	.	.	.
PCGF5	84333	broad.mit.edu	36	10	93001140	93001140	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032373	exon6	c.T437C	p.L146S	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93776478	93776478	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003972	exon36	c.G5225A	p.R1742H	.	.	.
MYOF	26509	broad.mit.edu	36	10	95073085	95073085	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133337	exon46	c.G5253T	p.V1751V	.	.	.
PDE6C	5146	broad.mit.edu	36	10	95370472	95370472	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006204	exon2	c.G574A	p.A192T	.	.	.
PLCE1	51196	broad.mit.edu	36	10	96056207	96056207	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165979	exon25	c.A4732G	p.S1578G	.	.	.
PDLIM1	9124	broad.mit.edu	36	10	97013714	97013714	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020992	exon4	c.T430C	p.Y144H	.	.	.
TM9SF3	56889	broad.mit.edu	36	10	98276992	98276992	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020123	exon14	c.C1670T	p.A557V	.	.	.
SLIT1	6585	broad.mit.edu	36	10	98797488	98797488	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003061	exon16	c.G1583T	p.S528I	.	.	.
RRP12	23223	broad.mit.edu	36	10	99140233	99140233	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015179	exon6	c.C690T	p.G230G	.	.	.
UBTD1	80019	broad.mit.edu	36	10	99320049	99320049	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024954	exon3	c.C463A	p.L155M	.	.	.
ANKRD2	26287	broad.mit.edu	36	10	99328054	99328054	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020349	exon3	c.A338G	p.Q113R	.	.	.
SLC25A28	81894	broad.mit.edu	36	10	101363463	101363463	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031212	exon2	c.500delG	p.G167fs	.	.	.
ABCC2	1244	broad.mit.edu	36	10	101534452	101534452	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000392	exon2	c.131delC	p.A44fs	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114839151	114839151	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146283	exon5	c.486delC	p.S162fs	.	.	.
LIPA	3988	broad.mit.edu	36	10	90974927	90974927	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127605	exon6	c.577delA	p.R193fs	.	.	.
SLCO4C1	353189	broad.mit.edu	36	5	101659645	101659645	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_180991	exon1	c.A221C	p.K74T	.	.	.
SLCO6A1	133482	broad.mit.edu	36	5	101763196	101763196	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173488	exon10	c.T1776C	p.S592S	.	.	.
GIN1	54826	broad.mit.edu	36	5	102451623	102451623	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017676	exon8	c.C1447T	p.R483C	.	.	.
GIN1	54826	broad.mit.edu	36	5	102460920	102460920	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017676	exon6	c.C1005T	p.G335G	.	.	.
ROPN1L	83853	broad.mit.edu	36	5	10514310	10514310	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031916	exon4	c.G432A	p.A144A	.	.	.
DCP2	167227	broad.mit.edu	36	5	112364802	112364802	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152624	exon5	c.A555C	p.K185N	.	.	.
AQPEP	206338	broad.mit.edu	36	5	115357343	115357343	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173800	exon6	c.G1267T	p.G423X	.	.	.
SRFBP1	153443	broad.mit.edu	36	5	121382890	121382890	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152546	exon5	c.C307T	p.L103L	.	.	.
ZNF474	133923	broad.mit.edu	36	5	121516282	121516282	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207317	exon2	c.C698A	p.T233N	.	.	.
IL3	3562	broad.mit.edu	36	5	131426146	131426146	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000588	exon4	c.C323T	p.T108M	.	.	.
GDF9	2661	broad.mit.edu	36	5	132227908	132227908	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005260	exon1	c.C217T	p.R73X	.	.	.
FSTL4	23105	broad.mit.edu	36	5	132563124	132563124	+	Silent	SNP	G	A	A	rs61740558	unknown	TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015082	exon16	c.C2091T	p.D697D	.	.	.
KDM3B	51780	broad.mit.edu	36	5	137741410	137741410	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016604	exon4	c.C577T	p.R193X	.	.	.
ETF1	2107	broad.mit.edu	36	5	137881195	137881195	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004730	exon4	c.C356T	p.P119L	.	.	.
PSD2	84249	broad.mit.edu	36	5	139174076	139174076	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032289	exon4	c.G959A	p.R320H	.	.	.
IK	3550	broad.mit.edu	36	5	140019084	140019084	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006083	exon13	c.C1177T	p.P393S	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140162870	140162870	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031497	exon1	c.G1904A	p.R635H	.	.	.
PCDHA8	56140	broad.mit.edu	36	5	140202198	140202198	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031856	exon1	c.G1108A	p.A370T	.	.	.
PCDHAC1	56135	broad.mit.edu	36	5	140287114	140287114	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031882	exon1	c.C453T	p.D151D	.	.	.
PCDHB2	56133	broad.mit.edu	36	5	140454978	140454978	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018936	exon1	c.A420G	p.I140M	.	.	.
PCDHB2	56133	broad.mit.edu	36	5	140456698	140456698	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018936	exon1	c.C2140A	p.R714R	.	.	.
PCDHB8	56128	broad.mit.edu	36	5	140538881	140538881	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019120	exon1	c.C1082T	p.A361V	.	.	.
PCDHB11	56125	broad.mit.edu	36	5	140561609	140561609	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018931	exon1	c.C2078T	p.A693V	.	.	.
PCDHB12	56124	broad.mit.edu	36	5	140570354	140570354	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018932	exon1	c.C1691T	p.P564L	.	.	.
PCDHB14	56122	broad.mit.edu	36	5	140585310	140585310	+	Silent	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018934	exon1	c.C2049A	p.A683A	.	.	.
PCDHB15	56121	broad.mit.edu	36	5	140606861	140606861	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018935	exon1	c.G1531A	p.G511S	.	.	.
PCDHGA3	56112	broad.mit.edu	36	5	140705522	140705522	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018916	exon1	c.C1738T	p.R580C	.	.	.
PCDHGB1	56104	broad.mit.edu	36	5	140711542	140711542	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018922	exon1	c.T1531C	p.F511L	.	.	.
PCDHGA6	56109	broad.mit.edu	36	5	140736061	140736061	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032086	exon1	c.G2227A	p.V743M	.	.	.
PCDHGA8	9708	broad.mit.edu	36	5	140754240	140754240	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032088	exon1	c.C1676T	p.A559V	.	.	.
PCDHGA9	56107	broad.mit.edu	36	5	140764384	140764384	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018921	exon1	c.G1681T	p.E561X	.	.	.
PCDHGB6	56100	broad.mit.edu	36	5	140769863	140769863	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018926	exon1	c.C1910T	p.A637V	.	.	.
PCDHGA12	26025	broad.mit.edu	36	5	140792254	140792254	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032094	exon1	c.G1744A	p.A582T	.	.	.
PCDH1	5097	broad.mit.edu	36	5	141229114	141229114	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032420	exon2	c.G107A	p.R36Q	.	.	.
PCDH12	51294	broad.mit.edu	36	5	141314957	141314957	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016580	exon1	c.G2644T	p.V882F	.	.	.
NDFIP1	80762	broad.mit.edu	36	5	141491604	141491604	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030571	exon2	c.T111C	p.D37D	.	.	.
SPINK5	11005	broad.mit.edu	36	5	147493611	147493611	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127698	exon33	c.C3244T	p.P1082S	.	.	.
GPX3	2878	broad.mit.edu	36	5	150387862	150387862	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002084	exon5	c.C659T	p.A220V	.	.	.
SLC36A2	153201	broad.mit.edu	36	5	150707077	150707077	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181776	exon1	c.A138G	p.A46A	.	.	.
FAT2	2196	broad.mit.edu	36	5	150894239	150894239	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001447	exon12	c.C9351T	p.H3117H	.	.	.
FAT2	2196	broad.mit.edu	36	5	150903974	150903974	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001447	exon9	c.C6907T	p.R2303W	.	.	.
CNOT8	9337	broad.mit.edu	36	5	154230455	154230455	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004779	exon4	c.A353T	p.N118I	.	.	.
SGCD	6444	broad.mit.edu	36	5	155704138	155704138	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172244	exon3	c.T65C	p.V22A	.	.	.
FAM71B	153745	broad.mit.edu	36	5	156522392	156522392	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130899	exon2	c.G1462A	p.V488I	.	.	.
FBXL7	23194	broad.mit.edu	36	5	15669144	15669144	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012304	exon2	c.G90A	p.T30T	.	.	.
ADRA1B	147	broad.mit.edu	36	5	159331584	159331584	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000679	exon2	c.G1070A	p.R357H	.	.	.
FABP6	2172	broad.mit.edu	36	5	159573346	159573346	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130958	exon3	c.G77A	p.C26Y	.	.	.
MYO10	4651	broad.mit.edu	36	5	16754082	16754082	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012334	exon25	c.C3422T	p.A1141V	.	.	.
MYO10	4651	broad.mit.edu	36	5	16754628	16754628	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012334	exon25	c.G2876A	p.R959Q	.	.	.
RARS	5917	broad.mit.edu	36	5	167877408	167877408	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002887	exon14	c.C1636T	p.R546C	.	.	.
SLIT3	6586	broad.mit.edu	36	5	168107946	168107946	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003062	exon20	c.C2209T	p.R737X	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169400709	169400709	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004946	exon37	c.C3738T	p.L1246L	.	.	.
STK10	6793	broad.mit.edu	36	5	171456126	171456126	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005990	exon8	c.A914C	p.E305A	.	.	.
SH3PXD2B	285590	broad.mit.edu	36	5	171699093	171699093	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017995	exon13	c.C1621T	p.R541W	.	.	.
C5orf41	153222	broad.mit.edu	36	5	172450332	172450332	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168393	exon4	c.G544A	p.A182T	.	.	.
STC2	8614	broad.mit.edu	36	5	172687725	172687725	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003714	exon1	c.C78T	p.D26D	.	.	.
SLC34A1	6569	broad.mit.edu	36	5	176746061	176746061	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167579	exon5	c.C420T	p.N140N	.	.	.
TMED9	54732	broad.mit.edu	36	5	176953809	176953809	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017510	exon4	c.G475A	p.D159N	.	.	.
RMND5B	64777	broad.mit.edu	36	5	177507626	177507626	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022762	exon11	c.G1169A	p.R390H	.	.	.
GRM6	2916	broad.mit.edu	36	5	178346337	178346337	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000843	exon8	c.C1524T	p.G508G	.	.	.
MAML1	9794	broad.mit.edu	36	5	179130789	179130789	+	Silent	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014757	exon4	c.A2007G	p.P669P	.	.	.
CNOT6	57472	broad.mit.edu	36	5	179925471	179925471	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015455	exon7	c.C605T	p.A202V	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23562713	23562713	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020227	exon11	c.C1759T	p.R587W	.	.	.
SDHA	6389	broad.mit.edu	36	5	288329	288329	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004168	exon9	c.C1135T	p.R379C	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31562295	31562295	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013235	exon4	c.T502C	p.Y168H	.	.	.
C5orf22	55322	broad.mit.edu	36	5	31571669	31571669	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018356	exon3	c.A289G	p.I97V	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32046255	32046255	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178140	exon5	c.G1317A	p.S439S	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33685463	33685463	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030955	exon8	c.G1287A	p.P429P	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33927630	33927630	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030955	exon1	c.C89A	p.P30H	.	.	.
AMACR	23600	broad.mit.edu	36	5	34033342	34033342	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167596	exon5	c.G778A	p.A260T	.	.	.
CAPSL	133690	broad.mit.edu	36	5	35946371	35946371	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144647	exon3	c.C169T	p.R57X	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37021167	37021167	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015384	exon10	c.C2128T	p.R710W	.	.	.
LIFR	3977	broad.mit.edu	36	5	38532296	38532296	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127671	exon13	c.A1830G	p.K610K	.	.	.
PRKAA1	5562	broad.mit.edu	36	5	40807587	40807587	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006251	exon4	c.G499A	p.A167T	.	.	.
C6	729	broad.mit.edu	36	5	41235734	41235734	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000065	exon4	c.G338T	p.G113V	.	.	.
ISL1	3670	broad.mit.edu	36	5	50719092	50719092	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002202	exon3	c.T230A	p.I77N	.	.	.
ADAMTS16	170690	broad.mit.edu	36	5	5235410	5235410	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139056	exon4	c.G755A	p.R252H	.	.	.
ITGA2	3673	broad.mit.edu	36	5	52397484	52397484	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002203	exon15	c.C1863T	p.S621S	.	.	.
ARL15	54622	broad.mit.edu	36	5	53444834	53444834	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019087	exon4	c.A417G	p.I139M	.	.	.
SNX18	112574	broad.mit.edu	36	5	53850751	53850751	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145427	exon1	c.C1212T	p.G404G	.	.	.
KIAA0947	23379	broad.mit.edu	36	5	5519529	5519529	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015325	exon14	c.C5975T	p.A1992V	.	.	.
IL31RA	133396	broad.mit.edu	36	5	55237800	55237800	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139017	exon9	c.G1179A	p.P393P	.	.	.
ANKRD55	79722	broad.mit.edu	36	5	55515123	55515123	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024669	exon3	c.T154C	p.S52P	.	.	.
PDE4D	5144	broad.mit.edu	36	5	58307350	58307350	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001197222	exon9	c.C1232T	p.T411M	.	.	.
CWC27	10283	broad.mit.edu	36	5	64135859	64135859	+	Silent	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005869	exon10	c.T828C	p.D276D	.	.	.
PPWD1	23398	broad.mit.edu	36	5	64918911	64918911	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015342	exon11	c.G1873A	p.V625I	.	.	.
MAST4	375449	broad.mit.edu	36	5	66496713	66496713	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015183	exon28	c.G5383A	p.E1795K	.	.	.
MAST4	375449	broad.mit.edu	36	5	66498027	66498027	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015183	exon28	c.C6697T	p.P2233S	.	.	.
CD180	4064	broad.mit.edu	36	5	66514544	66514544	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005582	exon3	c.C1883T	p.T628I	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71518200	71518200	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005909	exon4	c.C373T	p.R125C	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71529141	71529141	+	Silent	SNP	G	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005909	exon5	c.G4203T	p.P1401P	.	.	.
MRPS27	23107	broad.mit.edu	36	5	71564085	71564085	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015084	exon7	c.A532G	p.T178A	.	.	.
PTCD2	79810	broad.mit.edu	36	5	71689823	71689823	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024754	exon10	c.C980T	p.A327V	.	.	.
TMEM171	134285	broad.mit.edu	36	5	72455131	72455131	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173490	exon2	c.C175T	p.L59F	.	.	.
ENC1	8507	broad.mit.edu	36	5	73966531	73966531	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003633	exon2	c.C1536T	p.N512N	.	.	.
COL4A3BP	10087	broad.mit.edu	36	5	74710966	74710966	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130105	exon18	c.C2220T	p.Y740Y	.	.	.
COL4A3BP	10087	broad.mit.edu	36	5	74757060	74757060	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130105	exon6	c.G861T	p.E287D	.	.	.
SV2C	22987	broad.mit.edu	36	5	75463612	75463612	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014979	exon2	c.A281G	p.Q94R	.	.	.
F2RL2	2151	broad.mit.edu	36	5	75949702	75949702	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004101	exon2	c.G586A	p.V196I	.	.	.
ARSB	411	broad.mit.edu	36	5	78112077	78112077	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000046	exon8	c.C1501T	p.R501C	.	.	.
BHMT	635	broad.mit.edu	36	5	78451989	78451989	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001713	exon4	c.G346A	p.A116T	.	.	.
HOMER1	9456	broad.mit.edu	36	5	78733624	78733624	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004272	exon6	c.A538G	p.S180G	.	.	.
MSH3	4437	broad.mit.edu	36	5	80001840	80001840	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002439	exon4	c.G748A	p.V250M	.	.	.
RASGRF2	5924	broad.mit.edu	36	5	80292478	80292478	+	Silent	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006909	exon1	c.G165A	p.E55E	.	.	.
RPS23	6228	broad.mit.edu	36	5	81609334	81609334	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025	exon2	c.G98A	p.G33D	.	.	.
XRCC4	7518	broad.mit.edu	36	5	82684738	82684738	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022406	exon8	c.A932G	p.K311R	.	.	.
GPR98	84059	broad.mit.edu	36	5	89959315	89959315	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032119	exon7	c.A1204G	p.R402G	.	.	.
NR2F1	7025	broad.mit.edu	36	5	92949458	92949458	+	Silent	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005654	exon2	c.C543T	p.G181G	.	.	.
NR2F1	7025	broad.mit.edu	36	5	92949588	92949588	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005654	exon2	c.C673T	p.R225C	.	.	.
SLCO6A1	133482	broad.mit.edu	36	5	101776594	101776594	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173488	exon9	c.1625delA	p.K542fs	.	.	.
FSTL4	23105	broad.mit.edu	36	5	132562716	132562716	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015082	exon16	c.2499delG	p.G833fs	.	.	.
WDR70	55100	broad.mit.edu	36	5	37640996	37640996	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018034	exon10	c.991delA	p.K331fs	.	.	.
MIER3	166968	broad.mit.edu	36	5	56255524	56255524	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152622	exon11	c.1024delA	p.R342fs	.	.	.
CHD1	1105	broad.mit.edu	36	5	98234309	98234309	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001270	exon28	c.3960delA	p.K1320fs	.	.	.
MIR323	442897	broad.mit.edu	36	14	100561891	100561891	+	RNA	SNP	C	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
CEACAM16	388551	broad.mit.edu	36	19	49894542	49894542	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
SLC22A23	63027	broad.mit.edu	36	6	3228987	3228988	+	Frame_Shift_Del	DEL	AG	-	-	novel		TCGA-AA-3672-01	TCGA-AA-3672-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
FLJ40504	284085	broad.mit.edu	36	17	23628527	23628527	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
CRYBG3	131544	broad.mit.edu	36	3	99097606	99097606	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3672-01	TCGA-AA-3672-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
