Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
MLL4	9757	broad.mit.edu	36	19	40902732	40902733	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-3685-01	TCGA-AA-3685-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014727	exon3	c.643_644insC	p.T215fs	.	.	.
PLXNA3	55558	broad.mit.edu	36	X	153341758	153341759	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3685-01	TCGA-AA-3685-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017514	exon2	c.41_42insG	p.V14fs	.	.	.
MYO1B	4430	broad.mit.edu	36	2	191984111	191984112	+	Frame_Shift_Ins	INS	-	TG	TG	novel		TCGA-AA-3685-01	TCGA-AA-3685-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130158	exon27	c.2841_2842insTG	p.L947fs	.	.	.
PARP12	64761	broad.mit.edu	36	7	139403387	139403387	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022750	exon3	c.C498T	p.H166H	.	.	.
DGKB	1607	broad.mit.edu	36	7	14589228	14589228	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_145695	exon17	c.C1496A	p.T499N	.	.	.
KLHL7	55975	broad.mit.edu	36	7	23174127	23174127	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001031710	exon9	c.A1325G	p.N442S	.	.	.
GHRHR	2692	broad.mit.edu	36	7	30976041	30976041	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000823	exon4	c.G303C	p.W101C	.	.	.
ELMO1	9844	broad.mit.edu	36	7	37139262	37139262	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014800	exon14	c.C1189T	p.R397W	.	.	.
ATP9A	10079	broad.mit.edu	36	20	49663775	49663775	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006045	exon23	c.G2419T	p.G807X	.	.	.
GPR132	29933	broad.mit.edu	36	14	104589011	104589011	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013345	exon4	c.G508A	p.V170I	.	.	.
L2HGDH	79944	broad.mit.edu	36	14	49805721	49805721	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024884	exon7	c.C816G	p.C272W	.	.	.
KCNK13	56659	broad.mit.edu	36	14	89720453	89720453	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_022054	exon2	c.G580A	p.V194M	.	.	.
C22orf23	84645	broad.mit.edu	36	22	36679002	36679002	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032561	exon2	c.G101C	p.R34T	.	.	.
KCNJ4	3761	broad.mit.edu	36	22	37153913	37153913	+	Silent	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004981	exon2	c.C171T	p.Y57Y	.	.	.
PGLYRP2	114770	broad.mit.edu	36	19	15447371	15447371	+	Silent	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052890	exon2	c.G1110A	p.K370K	.	.	.
NCAN	1463	broad.mit.edu	36	19	19221684	19221684	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004386	exon15	c.G3930T	p.T1310T	.	.	.
ZNF429	353088	broad.mit.edu	36	19	21512631	21512631	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001415	exon4	c.G1936T	p.G646C	.	.	.
UBA2	10054	broad.mit.edu	36	19	39651872	39651872	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005499	exon17	c.G1829A	p.R610H	.	.	.
CD3EAP	10849	broad.mit.edu	36	19	50603680	50603680	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012099	exon3	c.C614T	p.S205L	.	.	.
RSPH6A	81492	broad.mit.edu	36	19	51005816	51005816	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_030785	exon2	c.C773T	p.T258M	.	.	.
HAS1	3036	broad.mit.edu	36	19	56908559	56908559	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001523	exon5	c.C1670T	p.T557M	.	.	.
ZNF480	147657	broad.mit.edu	36	19	57517795	57517795	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144684	exon5	c.C1480T	p.R494X	.	.	.
RP1	6101	broad.mit.edu	36	8	55696510	55696510	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006269	exon2	c.T431C	p.V144A	.	.	.
RP1	6101	broad.mit.edu	36	8	55704265	55704265	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006269	exon4	c.C5270T	p.S1757L	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103184994	103184994	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001854	exon42	c.C3275T	p.P1092L	.	.	.
C1orf66	51093	broad.mit.edu	36	1	154970836	154970836	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015997	exon6	c.C1048T	p.R350X	.	.	.
OR6K2	81448	broad.mit.edu	36	1	156936749	156936749	+	Silent	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005279	exon1	c.C318T	p.T106T	.	.	.
VANGL2	57216	broad.mit.edu	36	1	158656829	158656829	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020335	exon5	c.C805T	p.Q269X	.	.	.
SPEN	23013	broad.mit.edu	36	1	16133722	16133722	+	Silent	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015001	exon11	c.G8400A	p.A2800A	.	.	.
LRRC41	10489	broad.mit.edu	36	1	46524535	46524535	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006369	exon4	c.C581T	p.S194F	.	.	.
PRR5L	79899	broad.mit.edu	36	11	36415519	36415519	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160169	exon5	c.C361T	p.R121C	.	.	.
OR51B5	282763	broad.mit.edu	36	11	5320949	5320949	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005567	exon1	c.C382G	p.L128V	.	.	.
EHBP1L1	254102	broad.mit.edu	36	11	65105158	65105158	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001099409	exon7	c.C688T	p.R230X	.	.	.
HIST1H4E	8367	broad.mit.edu	36	6	26313127	26313127	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003545	exon1	c.G276C	p.K92N	.	.	.
MAPK14	1432	broad.mit.edu	36	6	36152323	36152323	+	Silent	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001315	exon8	c.C642T	p.A214A	.	.	.
MDGA1	266727	broad.mit.edu	36	6	37731522	37731522	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_153487	exon4	c.C511G	p.R171G	.	.	.
TBX18	9096	broad.mit.edu	36	6	85504976	85504976	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001080508	exon7	c.C1057T	p.R353W	.	.	.
MDN1	23195	broad.mit.edu	36	6	90518004	90518004	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014611	exon23	c.G3094C	p.G1032R	.	.	.
ATP2A3	489	broad.mit.edu	36	17	3801420	3801420	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_174955	exon5	c.G337A	p.E113K	.	.	.
RECQL5	9400	broad.mit.edu	36	17	71138346	71138346	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004259	exon13	c.C1666A	p.L556I	.	.	.
TP53	7157	broad.mit.edu	36	17	7518960	7518960	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon6	c.A614G	p.Y205C	TP53,stomach,NS,Substitution - Missense,0	.	.
KRTAP10-8	386681	broad.mit.edu	36	21	44857170	44857170	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198695	exon1	c.C725T	p.P242L	.	.	.
TBC1D24	57465	broad.mit.edu	36	16	2486490	2486490	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199107	exon2	c.G340A	p.V114M	.	.	.
BCMO1	53630	broad.mit.edu	36	16	79861409	79861410	+	Missense_Mutation	DNP	AG	CT	CT	novel		TCGA-AA-3685-01	TCGA-AA-3685-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017429	exon7	c.988_989CT	.	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19785661	19785661	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127718	exon35	c.G4663A	p.D1555N	.	.	.
KIAA2018	205717	broad.mit.edu	36	3	114862783	114862783	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001009899	exon7	c.A436C	p.K146Q	.	.	.
CCDC37	348807	broad.mit.edu	36	3	127621676	127621676	+	Silent	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182628	exon11	c.G996A	p.T332T	.	.	.
EPHB1	2047	broad.mit.edu	36	3	136394150	136394150	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004441	exon11	c.G1925A	p.G642D	.	.	.
LPP	4026	broad.mit.edu	36	3	189960660	189960660	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001167671	exon8	c.G1306T	p.V436F	.	.	.
CADPS	8618	broad.mit.edu	36	3	62439080	62439080	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_183393	exon20	c.G2988T	p.Q996H	.	.	.
OR5H6	79295	broad.mit.edu	36	3	99466700	99466700	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001005479	exon1	c.C882A	p.Y294X	.	.	.
FZD10	11211	broad.mit.edu	36	12	129214801	129214801	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_007197	exon1	c.C1361T	p.P454L	.	.	.
GALNT9	50614	broad.mit.edu	36	12	131249716	131249716	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122636	exon9	c.G1453A	p.G485S	.	.	.
ANO2	57101	broad.mit.edu	36	12	5614714	5614714	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020373	exon17	c.G1681A	p.A561T	.	.	.
TGM5	9333	broad.mit.edu	36	15	41315200	41315200	+	Silent	SNP	A	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004245	exon9	c.T1227A	p.P409P	.	.	.
RASGRF1	5923	broad.mit.edu	36	15	77078178	77078178	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002891	exon19	c.C2839T	p.R947C	.	.	.
SEC24B	10427	broad.mit.edu	36	4	110662143	110662143	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006323	exon14	c.G2420A	p.R807H	.	.	.
FRYL	285527	broad.mit.edu	36	4	48283484	48283484	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015030	exon19	c.G1659T	p.K553N	.	.	.
STIM2	57620	broad.mit.edu	36	4	26619228	26619228	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3685-01	TCGA-AA-3685-01			C	-	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001169117	exon9	c.1230delC	p.D410fs	.	.	.
CSF2RA	1438	broad.mit.edu	36	X	1388408	1388408	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172246	exon11	c.G1060A	p.A354T	.	.	.
MAGIX	79917	broad.mit.edu	36	X	48908316	48908316	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099680	exon2	c.C250G	p.L84V	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91018457	91018457	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032968	exon2	c.G562A	p.D188N	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141324224	141324224	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018557	exon29	c.G4856A	p.R1619H	.	.	.
TTC21B	79809	broad.mit.edu	36	2	166505921	166505921	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024753	exon6	c.G572A	p.R191H	.	.	.
TTN	7273	broad.mit.edu	36	2	179137701	179137701	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003319	exon154	c.C54208A	p.L18070M	.	.	.
TNS1	7145	broad.mit.edu	36	2	218383284	218383284	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_022648	exon29	c.C4724A	p.P1575H	.	.	.
PAX3	5077	broad.mit.edu	36	2	222775056	222775056	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127366	exon8	c.C1268T	p.T423M	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50133935	50133935	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_138735	exon4	c.C911G	p.P304R	.	.	.
ADD2	119	broad.mit.edu	36	2	70785010	70785010	+	Silent	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001185054	exon4	c.G273A	p.A91A	.	.	.
SNRNP200	23020	broad.mit.edu	36	2	96320909	96320909	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014014	exon18	c.C2369A	p.T790N	.	.	.
RNF20	56254	broad.mit.edu	36	9	103354660	103354660	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_019592	exon13	c.C1705T	p.R569X	.	.	.
RPL12	6136	broad.mit.edu	36	9	129253409	129253409	+	Silent	SNP	C	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000976	exon1	c.G9T	p.P3P	.	.	.
APC	324	broad.mit.edu	36	5	112202122	112202122	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C2878T	p.Q960X	.	.	.
APC	324	broad.mit.edu	36	5	112203298	112203298	+	Nonsense_Mutation	SNP	A	T	T	rs377860	by-cluster,by-hapmap	TCGA-AA-3685-01	TCGA-AA-3685-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.A4054T	p.K1352X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.
MARCH3	115123	broad.mit.edu	36	5	126278530	126278530	+	Silent	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178450	exon3	c.G384A	p.P128P	.	.	.
PCDHB3	56132	broad.mit.edu	36	5	140462046	140462046	+	Silent	SNP	C	T	T	rs62378912	unknown	TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018937	exon1	c.C1629T	p.S543S	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140692667	140692667	+	Silent	SNP	C	T	T	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031993	exon1	c.C2232T	p.D744D	.	.	.
NR3C1	2908	broad.mit.edu	36	5	142759746	142759746	+	Silent	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018074	exon2	c.C852T	p.I284I	.	.	.
DAB2	1601	broad.mit.edu	36	5	39411894	39411894	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001343	exon13	c.C2209T	p.P737S	.	.	.
NSUN2	54888	broad.mit.edu	36	5	6664086	6664086	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_017755	exon11	c.C1208T	p.A403V	.	.	.
KIR3DX1	90011	broad.mit.edu	36	19	59740178	59740178	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
DSCR6	53820	broad.mit.edu	36	21	37312456	37312456	+	Silent	SNP	G	A	A	novel		TCGA-AA-3685-01	TCGA-AA-3685-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
