Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CIC	23152	broad.mit.edu	36	19	47488722	47488723	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-3842-01	TCGA-AA-3842-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015125	exon14	c.3340_3341insC	p.A1114fs	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226628297	226628298	+	Frame_Shift_Ins	INS	-	CTAC	CTAC	novel		TCGA-AA-3842-01	TCGA-AA-3842-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098623	exon95	c.22345_22346insCTAC	p.A7449fs	.	.	.
MBD6	114785	broad.mit.edu	36	12	56207268	56207269	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-3842-01	TCGA-AA-3842-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052897	exon7	c.2073_2074insC	p.T691fs	.	.	.
TMEM198	130612	broad.mit.edu	36	2	220120766	220120767	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3842-01	TCGA-AA-3842-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005209	exon3	c.461_462insG	p.L154fs	.	.	.
USP6	9098	broad.mit.edu	36	17	4976341	4976342	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3842-01	TCGA-AA-3842-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
NOM1	64434	broad.mit.edu	36	7	156445309	156445309	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_138400	exon4	c.G1312A	p.G438S	.	.	.
CARD11	84433	broad.mit.edu	36	7	2932915	2932915	+	Silent	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032415	exon14	c.C1791T	p.D597D	.	.	.
SDK1	221935	broad.mit.edu	36	7	4018285	4018285	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152744	exon16	c.C2312G	p.P771R	.	.	.
GNAI1	2770	broad.mit.edu	36	7	79678253	79678253	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002069	exon6	c.G623A	p.R208Q	.	.	.
C20orf112	140688	broad.mit.edu	36	20	30507603	30507603	+	De_novo_Start_InFrame	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080616	exon3	c.C366T	p.Y122Y	.	.	.
ZNF439	90594	broad.mit.edu	36	19	11840195	11840195	+	Silent	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152262	exon3	c.G1311A	p.P437P	.	.	.
MYO9B	4650	broad.mit.edu	36	19	17178576	17178576	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001130065	exon34	c.C5475T	p.L1825L	.	.	.
DPY19L3	147991	broad.mit.edu	36	19	37664827	37664827	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172774	exon19	c.G1992A	p.M664I	.	.	.
ERF	2077	broad.mit.edu	36	19	47445688	47445688	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006494	exon4	c.G416T	p.G139V	.	.	.
IGFL3	388555	broad.mit.edu	36	19	51319029	51319029	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207393	exon3	c.A304T	p.M102L	.	.	.
GRIN2D	2906	broad.mit.edu	36	19	53599989	53599989	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000836	exon3	c.C652T	p.R218C	.	.	.
LRRC4B	94030	broad.mit.edu	36	19	55713100	55713100	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080457	exon3	c.C1682T	p.T561M	.	.	.
LILRB5	10990	broad.mit.edu	36	19	59452365	59452365	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001081442	exon3	c.C154A	p.P52T	.	.	.
ZNF530	348327	broad.mit.edu	36	19	62809707	62809707	+	Silent	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020880	exon3	c.C1002T	p.H334H	.	.	.
ZNF135	7694	broad.mit.edu	36	19	63271488	63271488	+	Silent	SNP	T	C	C	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003436	exon5	c.T1860C	p.C620C	.	.	.
MZF1	7593	broad.mit.edu	36	19	63774287	63774287	+	Silent	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198055	exon2	c.C282T	p.G94G	.	.	.
OPRK1	4986	broad.mit.edu	36	8	54326020	54326020	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000912	exon2	c.C131T	p.S44L	.	.	.
RP1	6101	broad.mit.edu	36	8	55703813	55703813	+	Silent	SNP	A	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006269	exon4	c.A4818T	p.T1606T	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88955138	88955138	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152418	exon1	c.C178T	p.Q60X	.	.	.
NLGN4Y	22829	broad.mit.edu	36	Y	15451303	15451303	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014893	exon5	c.G1111A	p.V371I	.	.	.
ATP1A1	476	broad.mit.edu	36	1	116742146	116742146	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000701	exon15	c.A2087G	p.Q696R	.	.	.
DHRS3	9249	broad.mit.edu	36	1	12561911	12561911	+	Silent	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004753	exon3	c.C456T	p.F152F	.	.	.
NPR1	4881	broad.mit.edu	36	1	151928383	151928383	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000906	exon17	c.C2660T	p.A887V	.	.	.
PYHIN1	149628	broad.mit.edu	36	1	157178595	157178595	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_198930	exon5	c.A757G	p.K253E	.	.	.
PPP1R12B	4660	broad.mit.edu	36	1	200684829	200684829	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002481	exon13	c.G1757A	p.R586H	.	.	.
MYBPH	4608	broad.mit.edu	36	1	201404672	201404672	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004997	exon9	c.C1402T	p.R468W	.	.	.
CDK18	5129	broad.mit.edu	36	1	203765275	203765275	+	Silent	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_212503	exon13	c.G1272A	p.L424L	.	.	.
PSEN2	5664	broad.mit.edu	36	1	225144363	225144363	+	Silent	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000447	exon9	c.C792T	p.L264L	.	.	.
C1orf198	84886	broad.mit.edu	36	1	229045969	229045969	+	Silent	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136494	exon5	c.C567T	p.P189P	.	.	.
OR2T1	26696	broad.mit.edu	36	1	246636767	246636767	+	Silent	SNP	C	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030904	exon1	c.C849A	p.G283G	.	.	.
MAN1C1	57134	broad.mit.edu	36	1	25948336	25948336	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020379	exon4	c.G757A	p.G253R	.	.	.
ELAVL4	1996	broad.mit.edu	36	1	50435718	50435718	+	Silent	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144774	exon6	c.C765T	p.G255G	.	.	.
USP24	23358	broad.mit.edu	36	1	55310169	55310169	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015306	exon67	c.C7706T	p.A2569V	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74811466	74811466	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001002912	exon14	c.C2516A	p.A839E	.	.	.
RAB3IL1	5866	broad.mit.edu	36	11	61426549	61426549	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013401	exon8	c.C940T	p.R314X	.	.	.
INCENP	3619	broad.mit.edu	36	11	61662980	61662980	+	Silent	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040694	exon7	c.G1218A	p.T406T	.	.	.
PDE10A	10846	broad.mit.edu	36	6	165747111	165747111	+	Silent	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006661	exon14	c.C1116T	p.I372I	.	.	.
THBS2	7058	broad.mit.edu	36	6	169390870	169390870	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003247	exon4	c.G176A	p.R59H	.	.	.
ME1	4199	broad.mit.edu	36	6	83995366	83995366	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002395	exon10	c.C1030T	p.R344C	.	.	.
SLC35A1	10559	broad.mit.edu	36	6	88275484	88275484	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006416	exon7	c.C758A	p.A253E	.	.	.
MDN1	23195	broad.mit.edu	36	6	90560321	90560321	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014611	exon5	c.C736T	p.R246C	.	.	.
KRTAP1-3	81850	broad.mit.edu	36	17	36444305	36444305	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_030966	exon1	c.A295G	p.S99G	.	.	.
KRTAP4-3	85290	broad.mit.edu	36	17	36577630	36577630	+	Silent	SNP	A	G	G	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033187	exon1	c.T321C	p.S107S	.	.	.
TP53	7157	broad.mit.edu	36	17	7514748	7514748	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3842-01	TCGA-AA-3842-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000546	exon10	c.1004delG	p.R335fs	.	.	.
CLDN8	9073	broad.mit.edu	36	21	30509853	30509853	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199328	exon1	c.T262A	p.S88T	.	.	.
PHKB	5257	broad.mit.edu	36	16	46091271	46091271	+	Silent	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031835	exon4	c.C249T	p.C83C	.	.	.
GNAO1	2775	broad.mit.edu	36	16	54928229	54928229	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_138736	exon6	c.G679A	p.A227T	.	.	.
CDH13	1012	broad.mit.edu	36	16	81623266	81623266	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001257	exon3	c.C308T	p.A103V	.	.	.
SMAD2	4087	broad.mit.edu	36	18	43625710	43625710	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001135937	exon9	c.C1189T	p.R397X	.	.	.
DCC	1630	broad.mit.edu	36	18	48686613	48686613	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005215	exon3	c.G614A	p.G205E	.	.	.
DSEL	92126	broad.mit.edu	36	18	63331899	63331899	+	Silent	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032160	exon2	c.G957A	p.K319K	.	.	.
NLGN1	22871	broad.mit.edu	36	3	175480995	175480995	+	Silent	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014932	exon7	c.G1680A	p.T560T	.	.	.
LAMP3	27074	broad.mit.edu	36	3	184354380	184354380	+	Silent	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014398	exon2	c.C543T	p.T181T	.	.	.
MASP1	5648	broad.mit.edu	36	3	188461347	188461347	+	Silent	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031849	exon4	c.C423T	p.D141D	.	.	.
ERP29	10961	broad.mit.edu	36	12	110941963	110941963	+	Silent	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006817	exon2	c.C165T	p.F55F	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128124754	128124754	+	Silent	SNP	C	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133448	exon9	c.G2919T	p.L973L	.	.	.
ST8SIA1	6489	broad.mit.edu	36	12	22378374	22378374	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003034	exon1	c.G60A	p.A20A	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004985	exon2	c.G38A	p.G13D	KRAS,lung,NS,Substitution - Missense,-1	.	.
VWF	7450	broad.mit.edu	36	12	5997875	5997875	+	Missense_Mutation	SNP	A	G	G	rs61750593	unknown	TCGA-AA-3842-01	TCGA-AA-3842-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000552	exon28	c.T4970C	p.L1657P	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49565607	49565607	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015263	exon23	c.G5437A	p.D1813N	.	.	.
HOMER2	9455	broad.mit.edu	36	15	81320497	81320497	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004839	exon6	c.A604G	p.R202G	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120198431	120198431	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_133477	exon5	c.G3680T	p.R1227I	.	.	.
RXFP1	59350	broad.mit.edu	36	4	159745678	159745678	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_021634	exon5	c.A401T	p.Q134L	.	.	.
VEGFC	7424	broad.mit.edu	36	4	177887765	177887765	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005429	exon2	c.A277G	p.N93D	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85923173	85923173	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014991	exon25	c.C4141T	p.R1381W	.	.	.
PAK3	5063	broad.mit.edu	36	X	110324236	110324236	+	Silent	SNP	C	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128166	exon12	c.C1044A	p.G348G	.	.	.
PDZD11	51248	broad.mit.edu	36	X	69425040	69425040	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016484	exon3	c.C136T	p.R46X	.	.	.
CPXCR1	53336	broad.mit.edu	36	X	87895826	87895826	+	Missense_Mutation	SNP	G	A	A	rs41307393	unknown	TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001184771	exon3	c.G755A	p.G252D	.	.	.
AQP12A	375318	broad.mit.edu	36	2	241280427	241280427	+	Silent	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198998	exon2	c.C387T	p.H129H	.	.	.
KCNK3	3777	broad.mit.edu	36	2	26804564	26804564	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002246	exon2	c.C809T	p.A270V	.	.	.
HAAO	23498	broad.mit.edu	36	2	42848246	42848246	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012205	exon9	c.G775T	p.G259W	.	.	.
DOCK8	81704	broad.mit.edu	36	9	329009	329009	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001190458	exon12	c.G1222A	p.G408R	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89454820	89454820	+	Silent	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004938	exon16	c.C1593T	p.A531A	.	.	.
RXFP2	122042	broad.mit.edu	36	13	31254873	31254873	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_130806	exon11	c.T918A	p.N306K	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66697912	66697912	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020403	exon2	c.G2662A	p.E888K	.	.	.
MXI1	4601	broad.mit.edu	36	10	112034653	112034653	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130439	exon6	c.T806A	p.I269N	.	.	.
GFRA1	2674	broad.mit.edu	36	10	117846217	117846217	+	Silent	SNP	A	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145453	exon6	c.T804A	p.S268S	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24873241	24873241	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_019590	exon19	c.C5036T	p.T1679I	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7279533	7279533	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001029880	exon15	c.G1681A	p.V561M	.	.	.
SFTPD	6441	broad.mit.edu	36	10	81687803	81687803	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003019	exon8	c.G913A	p.V305I	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13883256	13883256	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001369	exon37	c.C6128T	p.S2043L	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140700501	140700501	+	Silent	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032009	exon1	c.G1779A	p.A593A	.	.	.
GRIA1	2890	broad.mit.edu	36	5	153046070	153046070	+	Silent	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114183	exon8	c.C1122T	p.D374D	.	.	.
CDH12	1010	broad.mit.edu	36	5	21787968	21787968	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004061	exon15	c.G2020A	p.D674N	.	.	.
MGC42105	167359	broad.mit.edu	36	5	43281761	43281761	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_153361	exon2	c.C127T	p.R43C	.	.	.
ISL1	3670	broad.mit.edu	36	5	50719295	50719295	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3842-01	TCGA-AA-3842-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002202	exon3	c.G433A	p.D145N	.	.	.
