Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PYGO2	90780	broad.mit.edu	36	1	153198651	153198652	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3976-01	TCGA-AA-3976-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138300	exon3	c.449_450insC	p.Q150fs	.	.	.
RAB40B	10966	broad.mit.edu	36	17	78209074	78209075	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3976-01	TCGA-AA-3976-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006822	exon6	c.791_792insC	p.Q264fs	.	.	.
ADRA2A	150	broad.mit.edu	36	10	112827845	112827846	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3976-01	TCGA-AA-3976-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000681	exon1	c.101_102insG	p.P34fs	.	.	.
IMMP2L	83943	broad.mit.edu	36	7	110313988	110313989	+	Splice_Site	INS	-	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
POLR1A	25885	broad.mit.edu	36	2	86186575	86186576	+	De_novo_Start_OutOfFrame	INS	-	G	G	novel		TCGA-AA-3976-01	TCGA-AA-3976-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
FAM188B	84182	broad.mit.edu	36	7	30834868	30834868	+	Silent	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032222	exon6	c.C1122T	p.A374A	.	.	.
PCLO	27445	broad.mit.edu	36	7	82417552	82417552	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_033026	exon6	c.A10288G	p.M3430V	.	.	.
NOS3	4846	broad.mit.edu	36	7	150337233	150337233	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3976-01	TCGA-AA-3976-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000603	exon19	c.2269delA	p.K757fs	.	.	.
C20orf71	128861	broad.mit.edu	36	20	31275397	31275397	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_178466	exon2	c.G247A	p.G83S	.	.	.
SLC32A1	140679	broad.mit.edu	36	20	36789861	36789861	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_080552	exon2	c.C743T	p.T248M	.	.	.
TSHZ2	128553	broad.mit.edu	36	20	51306338	51306338	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_173485	exon2	c.G2934C	p.Q978H	.	.	.
RNASE10	338879	broad.mit.edu	36	14	20048671	20048671	+	Silent	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012975	exon1	c.G201A	p.T67T	.	.	.
PDGFB	5155	broad.mit.edu	36	22	37951728	37951728	+	Silent	SNP	C	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033016	exon6	c.G627T	p.R209R	.	.	.
CNN1	1264	broad.mit.edu	36	19	11512941	11512941	+	Silent	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001299	exon2	c.C114T	p.I38I	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21946502	21946502	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007153	exon4	c.A3174C	p.K1058N	.	.	.
CD22	933	broad.mit.edu	36	19	40524447	40524447	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001185100	exon9	c.G1774A	p.A592T	.	.	.
HKR1	284459	broad.mit.edu	36	19	42545359	42545359	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_181786	exon6	c.G822A	p.M274I	.	.	.
PSG7	5676	broad.mit.edu	36	19	48125612	48125612	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002783	exon3	c.C531A	p.S177R	.	.	.
NLRP12	91662	broad.mit.edu	36	19	59005740	59005740	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_144687	exon3	c.C985T	p.R329W	.	.	.
MLLT1	4298	broad.mit.edu	36	19	6181614	6181614	+	Silent	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005934	exon4	c.G387A	p.T129T	.	.	.
INSR	3643	broad.mit.edu	36	19	7077641	7077641	+	Silent	SNP	T	C	C	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000208	exon16	c.A2967G	p.G989G	.	.	.
OLFM2	93145	broad.mit.edu	36	19	9826378	9826378	+	Silent	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058164	exon6	c.C849T	p.Y283Y	.	.	.
ZHX2	22882	broad.mit.edu	36	8	124035299	124035299	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014943	exon3	c.G2368A	p.V790I	.	.	.
HR	55806	broad.mit.edu	36	8	22036012	22036012	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018411	exon8	c.G2060A	p.R687Q	.	.	.
STMN4	81551	broad.mit.edu	36	8	27154532	27154532	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030795	exon5	c.G355A	p.E119K	.	.	.
OPRK1	4986	broad.mit.edu	36	8	54304798	54304798	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000912	exon4	c.G755A	p.R252H	.	.	.
SORT1	6272	broad.mit.edu	36	1	109684897	109684897	+	Silent	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002959	exon10	c.C1236T	p.G412G	.	.	.
NRAS	4893	broad.mit.edu	36	1	115058053	115058053	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002524	exon3	c.C181A	p.Q61K	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
LRRC7	57554	broad.mit.edu	36	1	70277778	70277778	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020794	exon19	c.C3569T	p.P1190L	.	.	.
NEXN	91624	broad.mit.edu	36	1	78171672	78171672	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_144573	exon10	c.C1171T	p.R391X	.	.	.
LPPR4	9890	broad.mit.edu	36	1	99544586	99544586	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014839	exon7	c.G1724A	p.R575Q	.	.	.
TECTA	7007	broad.mit.edu	36	11	120503943	120503943	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005422	exon8	c.G2047A	p.V683I	.	.	.
ANO3	63982	broad.mit.edu	36	11	26494967	26494967	+	Silent	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_031418	exon6	c.C609T	p.P203P	.	.	.
RAG1	5896	broad.mit.edu	36	11	36553439	36553439	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000448	exon2	c.C2009T	p.T670M	.	.	.
OR4A15	81328	broad.mit.edu	36	11	54892701	54892701	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001005275	exon1	c.C766A	p.Q256K	.	.	.
OR52H1	390067	broad.mit.edu	36	11	5522651	5522651	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001005289	exon1	c.G679A	p.A227T	.	.	.
TSGA10IP	254187	broad.mit.edu	36	11	65472164	65472164	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152762	exon4	c.C1120T	p.R374C	.	.	.
DDO	8528	broad.mit.edu	36	6	110820734	110820734	+	Silent	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003649	exon5	c.C1047T	p.A349A	.	.	.
AHI1	54806	broad.mit.edu	36	6	135805468	135805468	+	Silent	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017651	exon13	c.C1857T	p.H619H	.	.	.
HDGFL1	154150	broad.mit.edu	36	6	22677828	22677828	+	Silent	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138574	exon1	c.G45A	p.V15V	.	.	.
SRSF12	135295	broad.mit.edu	36	6	89865022	89865022	+	Silent	SNP	A	G	G	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080743	exon5	c.T780C	p.S260S	.	.	.
KCNJ12	3768	broad.mit.edu	36	17	21259702	21259702	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_021012	exon3	c.C455T	p.T152M	.	.	.
KRTAP4-12	83755	broad.mit.edu	36	17	36533613	36533613	+	Silent	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031854	exon1	c.C288T	p.C96C	.	.	.
TP53	7157	broad.mit.edu	36	17	7517867	7517867	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon8	c.G796T	p.G266X	TP53,central_nervous_system,brain,Substitution - Missense,0	.	.
COQ9	57017	broad.mit.edu	36	16	56044313	56044313	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020312	exon3	c.C342A	p.H114Q	.	.	.
CDH8	1006	broad.mit.edu	36	16	60246915	60246915	+	Silent	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001796	exon11	c.C1866T	p.G622G	.	.	.
CDH11	1009	broad.mit.edu	36	16	63590136	63590136	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001797	exon4	c.G353A	p.R118Q	.	.	.
CHST4	10164	broad.mit.edu	36	16	70128716	70128716	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001166395	exon2	c.G635A	p.R212H	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79807389	79807389	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_052892	exon2	c.C425T	p.S142L	.	.	.
ZNF521	25925	broad.mit.edu	36	18	21058423	21058423	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015461	exon4	c.C3457A	p.L1153I	.	.	.
MYO5B	4645	broad.mit.edu	36	18	45685161	45685161	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_001080467	exon20	c.T2450G	p.V817G	.	.	.
ZBTB11	27107	broad.mit.edu	36	3	102867221	102867221	+	Silent	SNP	G	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014415	exon4	c.C900A	p.V300V	.	.	.
TF	7018	broad.mit.edu	36	3	134977125	134977125	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001063	exon15	c.G1846A	p.V616I	.	.	.
CLSTN2	64084	broad.mit.edu	36	3	141758154	141758154	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_022131	exon11	c.C1784T	p.T595M	.	.	.
OTOL1	131149	broad.mit.edu	36	3	162704174	162704174	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001080440	exon4	c.C1184T	p.T395M	.	.	.
TTC14	151613	broad.mit.edu	36	3	181810776	181810776	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_133462	exon12	c.G2065A	p.A689T	.	.	.
CLCN2	1181	broad.mit.edu	36	3	185559465	185559465	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004366	exon2	c.G212A	p.R71Q	.	.	.
LRRC3B	116135	broad.mit.edu	36	3	26726182	26726182	+	Silent	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052953	exon2	c.C15T	p.D5D	.	.	.
FBXL2	25827	broad.mit.edu	36	3	33375498	33375498	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001171713	exon3	c.G101A	p.R34Q	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36873489	36873489	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014831	exon12	c.C2596T	p.R866X	.	.	.
GPX1	2876	broad.mit.edu	36	3	49369948	49369948	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000581	exon2	c.C489G	p.N163K	.	.	.
LRTM1	57408	broad.mit.edu	36	3	54933835	54933835	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020678	exon2	c.C455T	p.A152V	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78793892	78793892	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002941	exon15	c.G2029T	p.V677F	.	.	.
RPH3A	22895	broad.mit.edu	36	12	111798871	111798871	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014954	exon12	c.G976C	p.E326Q	.	.	.
RILPL1	353116	broad.mit.edu	36	12	122536273	122536273	+	Silent	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178314	exon5	c.C834T	p.D278D	.	.	.
ZNF10	7556	broad.mit.edu	36	12	132242169	132242169	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015394	exon5	c.G264T	p.E88D	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2576898	2576898	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001129835	exon21	c.T2828C	p.I943T	.	.	.
ERBB3	2065	broad.mit.edu	36	12	54765121	54765121	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001005915	exon3	c.G310A	p.V104M	ERBB3,ovary,NS,Substitution - Missense,0	.	.
IL26	55801	broad.mit.edu	36	12	66905243	66905243	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018402	exon3	c.C316T	p.R106C	.	.	.
BBS10	79738	broad.mit.edu	36	12	75265187	75265187	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024685	exon2	c.G709T	p.A237S	.	.	.
AMDHD1	144193	broad.mit.edu	36	12	94874809	94874809	+	Silent	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152435	exon4	c.C525T	p.R175R	.	.	.
GCOM1	145781	broad.mit.edu	36	15	55709309	55709309	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_152451	exon6	c.G643A	p.V215I	.	.	.
FAT4	79633	broad.mit.edu	36	4	126555756	126555756	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024582	exon5	c.C6188A	p.T2063K	.	.	.
TBC1D9	23158	broad.mit.edu	36	4	141817507	141817507	+	Silent	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015130	exon6	c.G1050A	p.P350P	.	.	.
TMEM144	55314	broad.mit.edu	36	4	159355829	159355829	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018342	exon4	c.G146A	p.W49X	.	.	.
ARSH	347527	broad.mit.edu	36	X	2946583	2946583	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011719	exon5	c.G773A	p.R258K	.	.	.
CYBB	1536	broad.mit.edu	36	X	37537990	37537990	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000397	exon5	c.G470A	p.R157Q	.	.	.
MED12	9968	broad.mit.edu	36	X	70255428	70255428	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005120	exon1	c.G99T	p.E33D	.	.	.
SNTG2	54221	broad.mit.edu	36	2	1194905	1194905	+	Silent	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018968	exon9	c.G708A	p.T236T	.	.	.
ALK	238	broad.mit.edu	36	2	29460204	29460204	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004304	exon5	c.G1180A	p.G394R	.	.	.
OR13C9	286362	broad.mit.edu	36	9	106419781	106419781	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001001956	exon1	c.C526T	p.H176Y	.	.	.
EPB41L4B	54566	broad.mit.edu	36	9	111043887	111043887	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018424	exon16	c.C1433T	p.S478L	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112248018	112248018	+	Silent	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153366	exon26	c.C4383T	p.D1461D	.	.	.
C9orf114	51490	broad.mit.edu	36	9	130630947	130630947	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_016390	exon3	c.A96T	p.K32N	.	.	.
FIBCD1	84929	broad.mit.edu	36	9	132770527	132770527	+	Silent	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145106	exon7	c.C1041T	p.Y347Y	.	.	.
NTNG2	84628	broad.mit.edu	36	9	134092141	134092141	+	Silent	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032536	exon4	c.C942T	p.P314P	.	.	.
UNC13B	10497	broad.mit.edu	36	9	35227788	35227788	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006377	exon5	c.A359C	p.K120T	.	.	.
THSD1	55901	broad.mit.edu	36	13	51850408	51850408	+	Silent	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018676	exon5	c.G1698A	p.A566A	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83353489	83353489	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_052910	exon1	c.G155A	p.R52H	.	.	.
GPC5	2262	broad.mit.edu	36	13	90899157	90899157	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004466	exon2	c.G305A	p.R102Q	.	.	.
DHTKD1	55526	broad.mit.edu	36	10	12166679	12166679	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018706	exon3	c.C445T	p.R149W	.	.	.
ITGB1	3688	broad.mit.edu	36	10	33264476	33264476	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133376	exon2	c.T17G	p.I6S	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55582869	55582869	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001142767	exon13	c.G1670A	p.R557Q	.	.	.
MAN2A1	4124	broad.mit.edu	36	5	109153107	109153107	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002372	exon12	c.A1923G	p.I641M	.	.	.
APC	324	broad.mit.edu	36	5	112201891	112201891	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon14	c.C2647T	p.Q883X	.	.	.
DMXL1	1657	broad.mit.edu	36	5	118497696	118497696	+	Silent	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005509	exon12	c.C2178T	p.A726A	.	.	.
PCDHB15	56121	broad.mit.edu	36	5	140606860	140606860	+	Silent	SNP	C	T	T	rs17844572	unknown	TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018935	exon1	c.C1530T	p.N510N	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140700590	140700590	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_032009	exon1	c.C1868T	p.T623M	.	.	.
PDGFRB	5159	broad.mit.edu	36	5	149496792	149496792	+	Silent	SNP	C	T	T	novel		TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002609	exon2	c.G12A	p.P4P	.	.	.
APC	324	broad.mit.edu	36	5	112203429	112203429	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3976-01	TCGA-AA-3976-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.4185delG	p.M1395fs	.	.	.
NBPF11	200030	broad.mit.edu	36	1	146709093	146709093	+	Splice_Site	SNP	C	T	T	rs4350200	unknown	TCGA-AA-3976-01	TCGA-AA-3976-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
