Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
GLYR1	84656	broad.mit.edu	36	16	4795293	4795294	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032569	exon16	c.1607_1608insG	p.A536fs	.	.	.
JMJD7-PLA2G4B	8681	broad.mit.edu	36	15	39916353	39916354	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114632	exon7	c.785_786insT	p.T262fs	.	.	.
ZAN	7455	broad.mit.edu	36	7	100172906	100172906	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173059	exon6	c.G611A	p.R204H	.	.	.
ZAN	7455	broad.mit.edu	36	7	100211234	100211234	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173059	exon33	c.G6034A	p.A2012T	.	.	.
MUC17	140453	broad.mit.edu	36	7	100461695	100461695	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040105	exon3	c.C278T	p.S93L	.	.	.
MUC17	140453	broad.mit.edu	36	7	100472861	100472861	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040105	exon3	c.T11444C	p.L3815S	.	.	.
MUC17	140453	broad.mit.edu	36	7	100480584	100480584	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040105	exon7	c.G12822A	p.E4274E	.	.	.
DNAJC2	27000	broad.mit.edu	36	7	102740318	102740318	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001129887	exon15	c.C1641T	p.V547V	.	.	.
RELN	5649	broad.mit.edu	36	7	102984816	102984816	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005045	exon38	c.C5641T	p.L1881L	.	.	.
RELN	5649	broad.mit.edu	36	7	103021537	103021537	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005045	exon27	c.A3740G	p.Y1247C	.	.	.
MLL5	55904	broad.mit.edu	36	7	104509382	104509382	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182931	exon13	c.A1260C	p.E420D	.	.	.
MLL5	55904	broad.mit.edu	36	7	104534229	104534229	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182931	exon20	c.G2621A	p.R874Q	.	.	.
PRKAR2B	5577	broad.mit.edu	36	7	106584672	106584672	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002736	exon9	c.C926T	p.S309L	.	.	.
GPR22	2845	broad.mit.edu	36	7	106901815	106901815	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005295	exon3	c.A74G	p.D25G	.	.	.
GPR22	2845	broad.mit.edu	36	7	106902462	106902462	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005295	exon3	c.C721T	p.R241X	.	.	.
COG5	10466	broad.mit.edu	36	7	106985704	106985704	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161520	exon2	c.A280C	p.K94Q	.	.	.
DUS4L	11062	broad.mit.edu	36	7	107004091	107004091	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181581	exon7	c.C524T	p.A175V	.	.	.
SLC26A3	1811	broad.mit.edu	36	7	107215076	107215076	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000111	exon7	c.G850A	p.D284N	.	.	.
LAMB1	3912	broad.mit.edu	36	7	107378909	107378909	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002291	exon24	c.G3389A	p.R1130Q	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107483493	107483493	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007356	exon25	c.C3575T	p.A1192V	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107485513	107485513	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007356	exon24	c.C3379T	p.P1127S	.	.	.
PNPLA8	50640	broad.mit.edu	36	7	107900220	107900220	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015723	exon12	c.A2210G	p.Y737C	.	.	.
DOCK4	9732	broad.mit.edu	36	7	111416340	111416340	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014705	exon6	c.C430T	p.R144C	.	.	.
PPP1R3A	5506	broad.mit.edu	36	7	113345624	113345624	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002711	exon1	c.A664G	p.N222D	.	.	.
MDFIC	29969	broad.mit.edu	36	7	114443021	114443021	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199072	exon5	c.C864T	p.F288F	.	.	.
TFEC	22797	broad.mit.edu	36	7	115369288	115369288	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018058	exon6	c.G471T	p.V157V	.	.	.
THSD7A	221981	broad.mit.edu	36	7	11547640	11547640	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015204	exon6	c.G1753A	p.E585K	.	.	.
MET	4233	broad.mit.edu	36	7	116127057	116127057	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000245	exon2	c.T683G	p.F228C	.	.	.
ING3	54556	broad.mit.edu	36	7	120395230	120395230	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019071	exon8	c.G563A	p.R188Q	.	.	.
C7orf58	79974	broad.mit.edu	36	7	120491531	120491531	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024913	exon5	c.A544C	p.N182H	.	.	.
C7orf58	79974	broad.mit.edu	36	7	120722857	120722857	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024913	exon23	c.C2996T	p.S999L	.	.	.
PTPRZ1	5803	broad.mit.edu	36	7	121439023	121439023	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002851	exon12	c.C2687A	p.S896Y	.	.	.
RNF148	378925	broad.mit.edu	36	7	122129293	122129293	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198085	exon1	c.G748A	p.E250K	.	.	.
IQUB	154865	broad.mit.edu	36	7	122930387	122930387	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178827	exon5	c.G714T	p.Q238H	.	.	.
WASL	8976	broad.mit.edu	36	7	123122122	123122122	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003941	exon8	c.G709A	p.D237N	.	.	.
GRM8	2918	broad.mit.edu	36	7	125961091	125961091	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127323	exon9	c.A1581G	p.K527K	.	.	.
GRM8	2918	broad.mit.edu	36	7	126331928	126331928	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127323	exon4	c.G773T	p.R258I	.	.	.
GRM8	2918	broad.mit.edu	36	7	126533856	126533856	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127323	exon3	c.G657A	p.S219S	.	.	.
LRRC4	64101	broad.mit.edu	36	7	127457452	127457452	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022143	exon2	c.G478A	p.E160K	.	.	.
CCDC136	64753	broad.mit.edu	36	7	128233093	128233093	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022742	exon7	c.C991T	p.R331C	.	.	.
TSPAN33	340348	broad.mit.edu	36	7	128591633	128591633	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178562	exon5	c.T446G	p.F149C	.	.	.
CPA1	1357	broad.mit.edu	36	7	129812391	129812391	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001868	exon8	c.A956C	p.K319T	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131517473	131517473	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020911	exon17	c.G3175A	p.A1059T	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131843040	131843040	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181775	exon3	c.C953T	p.A318V	.	.	.
LRGUK	136332	broad.mit.edu	36	7	133509902	133509902	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144648	exon8	c.C994A	p.L332I	.	.	.
CALD1	800	broad.mit.edu	36	7	134293514	134293514	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033157	exon11	c.C1304T	p.S435L	.	.	.
C7orf49	78996	broad.mit.edu	36	7	134502081	134502081	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024033	exon4	c.C296T	p.S99L	.	.	.
WDR91	29062	broad.mit.edu	36	7	134541322	134541322	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014149	exon5	c.G623A	p.R208Q	.	.	.
CHRM2	1129	broad.mit.edu	36	7	136350307	136350307	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000739	exon4	c.G155A	p.R52H	.	.	.
TRIM24	8805	broad.mit.edu	36	7	137839586	137839586	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003852	exon2	c.C376T	p.R126C	.	.	.
ATP6V0A4	50617	broad.mit.edu	36	7	138095104	138095104	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130840	exon7	c.G572A	p.R191Q	.	.	.
TTC26	79989	broad.mit.edu	36	7	138496288	138496288	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144920	exon8	c.G772T	p.E258X	.	.	.
ETV1	2115	broad.mit.edu	36	7	13915785	13915785	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163147	exon9	c.G868A	p.D290N	.	.	.
ETV1	2115	broad.mit.edu	36	7	13945391	13945391	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163147	exon6	c.T241G	p.F81V	.	.	.
ADCK2	90956	broad.mit.edu	36	7	140033301	140033301	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052853	exon5	c.A1348C	p.N450H	.	.	.
SSBP1	6742	broad.mit.edu	36	7	141091769	141091769	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003143	exon6	c.C319T	p.R107X	.	.	.
OR9A4	130075	broad.mit.edu	36	7	141265916	141265916	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001656	exon1	c.C772A	p.L258I	.	.	.
TAS2R38	5726	broad.mit.edu	36	7	141319397	141319397	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176817	exon1	c.G562T	p.D188Y	.	.	.
PRSS1	5644	broad.mit.edu	36	7	142139345	142139345	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002769	exon3	c.G347A	p.R116H	.	.	.
TRPV6	55503	broad.mit.edu	36	7	142283036	142283036	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018646	exon9	c.G1126A	p.A376T	.	.	.
TRPV6	55503	broad.mit.edu	36	7	142284302	142284302	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018646	exon6	c.G743A	p.G248E	.	.	.
TRPV6	55503	broad.mit.edu	36	7	142285646	142285646	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018646	exon3	c.G229A	p.A77T	.	.	.
TRPV5	56302	broad.mit.edu	36	7	142321976	142321976	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019841	exon12	c.G1475A	p.R492H	.	.	.
TRPV5	56302	broad.mit.edu	36	7	142337611	142337611	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019841	exon2	c.C181A	p.L61I	.	.	.
KEL	3792	broad.mit.edu	36	7	142365133	142365133	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000420	exon6	c.G575A	p.R192Q	.	.	.
TAS2R39	259285	broad.mit.edu	36	7	142590956	142590956	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176881	exon1	c.C323T	p.A108V	.	.	.
CLCN1	1180	broad.mit.edu	36	7	142739951	142739951	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000083	exon12	c.G1264A	p.E422K	.	.	.
TAS2R60	338398	broad.mit.edu	36	7	142851214	142851214	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177437	exon1	c.G547A	p.D183N	.	.	.
TAS2R41	259287	broad.mit.edu	36	7	142885739	142885739	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176883	exon1	c.G652A	p.G218R	.	.	.
TAS2R41	259287	broad.mit.edu	36	7	142885959	142885959	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176883	exon1	c.G872A	p.R291Q	.	.	.
OR2A25	392138	broad.mit.edu	36	7	143402811	143402811	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004488	exon1	c.C566T	p.A189V	.	.	.
OR2A1	346528	broad.mit.edu	36	7	143560542	143560542	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001802	exon1	c.G310A	p.E104K	.	.	.
EZH2	2146	broad.mit.edu	36	7	148137118	148137118	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152998	exon18	c.G2041A	p.E681K	.	.	.
ZNF425	155054	broad.mit.edu	36	7	148432888	148432888	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001661	exon4	c.C1008T	p.D336D	.	.	.
LOC155060	155060	broad.mit.edu	36	7	148594944	148594944	+	Silent	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195220	exon3	c.C522G	p.G174G	.	.	.
GIMAP8	155038	broad.mit.edu	36	7	149802089	149802089	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175571	exon4	c.G739T	p.E247X	.	.	.
GIMAP8	155038	broad.mit.edu	36	7	149805532	149805532	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175571	exon5	c.G1729T	p.D577Y	.	.	.
GIMAP5	55340	broad.mit.edu	36	7	150070524	150070524	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199577	exon6	c.C976T	p.R326C	.	.	.
KCNH2	3757	broad.mit.edu	36	7	150280719	150280719	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172057	exon2	c.G264A	p.S88S	.	.	.
GBX1	2636	broad.mit.edu	36	7	150476767	150476767	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098834	exon2	c.C934T	p.R312X	.	.	.
GALNTL5	168391	broad.mit.edu	36	7	151330981	151330981	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145292	exon6	c.G908A	p.R303Q	.	.	.
MLL3	58508	broad.mit.edu	36	7	151477024	151477024	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170606	exon52	c.C12921T	p.I4307I	.	.	.
MLL3	58508	broad.mit.edu	36	7	151491226	151491226	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170606	exon43	c.G10369A	p.D3457N	.	.	.
PAXIP1	22976	broad.mit.edu	36	7	154398881	154398881	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007349	exon6	c.G532A	p.E178K	.	.	.
CNPY1	285888	broad.mit.edu	36	7	154994433	154994433	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001103176	exon2	c.G61A	p.A21T	.	.	.
UBE3C	9690	broad.mit.edu	36	7	156692986	156692986	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014671	exon12	c.G1552A	p.E518K	.	.	.
NCAPG2	54892	broad.mit.edu	36	7	158178864	158178864	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017760	exon3	c.G165T	p.K55N	.	.	.
SNX13	23161	broad.mit.edu	36	7	17802982	17802982	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015132	exon25	c.T2619G	p.I873M	.	.	.
SNX13	23161	broad.mit.edu	36	7	17807755	17807755	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015132	exon22	c.C2279T	p.S760L	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18755231	18755231	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178423	exon14	c.G1979A	p.R660Q	.	.	.
ITGB8	3696	broad.mit.edu	36	7	20407897	20407897	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002214	exon10	c.A1310C	p.K437T	.	.	.
ABCB5	340273	broad.mit.edu	36	7	20653786	20653786	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163941	exon10	c.T1085C	p.V362A	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21578012	21578012	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003777	exon8	c.G1489T	p.G497X	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21607278	21607278	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003777	exon17	c.G3381A	p.W1127X	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21696987	21696987	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003777	exon35	c.C6026T	p.S2009L	.	.	.
RAPGEF5	9771	broad.mit.edu	36	7	22226092	22226092	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012294	exon9	c.G455A	p.R152Q	.	.	.
FAM126A	84668	broad.mit.edu	36	7	22951778	22951778	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032581	exon11	c.T1521C	p.G507G	.	.	.
KLHL7	55975	broad.mit.edu	36	7	23172057	23172057	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031710	exon8	c.T1152G	p.I384M	.	.	.
KLHL7	55975	broad.mit.edu	36	7	23180198	23180198	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031710	exon11	c.A1517G	p.N506S	.	.	.
SKAP2	8935	broad.mit.edu	36	7	26733147	26733147	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003930	exon7	c.A473G	p.K158R	.	.	.
HOXA5	3202	broad.mit.edu	36	7	27148078	27148078	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019102	exon2	c.A714G	p.Q238Q	.	.	.
HOXA6	3203	broad.mit.edu	36	7	27153572	27153572	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024014	exon1	c.G322A	p.E108K	.	.	.
PDE1C	5137	broad.mit.edu	36	7	32076443	32076443	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001191056	exon1	c.C88T	p.R30W	.	.	.
PDE1C	5137	broad.mit.edu	36	7	32176050	32176050	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001191058	exon3	c.G180A	p.G60G	.	.	.
FKBP9	11328	broad.mit.edu	36	7	33006308	33006308	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007270	exon8	c.G1283A	p.G428E	.	.	.
BMPER	168667	broad.mit.edu	36	7	34092091	34092091	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133468	exon13	c.G1607A	p.R536K	.	.	.
DPY19L1	23333	broad.mit.edu	36	7	34956003	34956003	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015283	exon14	c.C1134A	p.F378L	.	.	.
DPY19L1	23333	broad.mit.edu	36	7	34960900	34960900	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015283	exon13	c.T1036C	p.F346L	.	.	.
ANLN	54443	broad.mit.edu	36	7	36428003	36428003	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018685	exon13	c.G2176A	p.E726K	.	.	.
SDK1	221935	broad.mit.edu	36	7	3645218	3645218	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152744	exon3	c.G515A	p.R172Q	.	.	.
AMPH	273	broad.mit.edu	36	7	38400144	38400144	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139316	exon17	c.G1468T	p.A490S	.	.	.
AMPH	273	broad.mit.edu	36	7	38469114	38469114	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139316	exon10	c.C874T	p.R292W	.	.	.
VPS41	27072	broad.mit.edu	36	7	38764537	38764537	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014396	exon18	c.C1492T	p.R498W	.	.	.
INHBA	3624	broad.mit.edu	36	7	41696333	41696333	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002192	exon3	c.C721T	p.R241W	.	.	.
C7orf25	79020	broad.mit.edu	36	7	42916942	42916942	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024054	exon2	c.G83T	p.R28I	.	.	.
HECW1	23072	broad.mit.edu	36	7	43485849	43485849	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015052	exon17	c.G3215A	p.R1072Q	.	.	.
MYL7	58498	broad.mit.edu	36	7	44147127	44147127	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021223	exon2	c.C75A	p.V25V	.	.	.
CAMK2B	816	broad.mit.edu	36	7	44247866	44247867	+	Missense_Mutation	DNP	AG	TA	TA	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172078	exon11	c.860_861TA	.	.	.	.
ADCY1	107	broad.mit.edu	36	7	45598984	45598984	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021116	exon2	c.G741A	p.R247R	.	.	.
TNS3	64759	broad.mit.edu	36	7	47352318	47352318	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022748	exon18	c.G2443A	p.V815I	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47798814	47798814	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138295	exon56	c.A8462G	p.N2821S	.	.	.
SUN3	256979	broad.mit.edu	36	7	48034944	48034944	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152782	exon2	c.G117A	p.A39A	.	.	.
UPP1	7378	broad.mit.edu	36	7	48113152	48113152	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181597	exon8	c.C594T	p.S198S	.	.	.
PAPOLB	56903	broad.mit.edu	36	7	4867583	4867583	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020144	exon1	c.G385A	p.D129N	.	.	.
PAPOLB	56903	broad.mit.edu	36	7	4867763	4867763	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020144	exon1	c.T205G	p.L69V	.	.	.
POM121L12	285877	broad.mit.edu	36	7	53071667	53071667	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182595	exon1	c.C809T	p.A270V	.	.	.
EGFR	1956	broad.mit.edu	36	7	55191053	55191053	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201282	exon8	c.G926A	p.R309Q	.	.	.
EGFR	1956	broad.mit.edu	36	7	55191951	55191951	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201282	exon10	c.C1139A	p.S380Y	.	.	.
ZNF479	90827	broad.mit.edu	36	7	57192030	57192030	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033273	exon5	c.G1034T	p.R345I	.	.	.
ZNF479	90827	broad.mit.edu	36	7	57192109	57192109	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033273	exon5	c.C955A	p.H319N	.	.	.
ZNF479	90827	broad.mit.edu	36	7	57197693	57197693	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033273	exon4	c.G236T	p.R79I	.	.	.
OCM	654231	broad.mit.edu	36	7	5887057	5887057	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001097622	exon1	c.C11T	p.T4M	.	.	.
PMS2	5395	broad.mit.edu	36	7	5989028	5989028	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000535	exon12	c.C2127T	p.F709F	.	.	.
C7orf70	84792	broad.mit.edu	36	7	6336630	6336630	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037163	exon2	c.C681A	p.F227L	.	.	.
C7orf70	84792	broad.mit.edu	36	7	6337149	6337149	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037163	exon2	c.A162G	p.G54G	.	.	.
ZNF107	51427	broad.mit.edu	36	7	63805898	63805898	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013746	exon5	c.A1781G	p.N594S	.	.	.
ZNF107	51427	broad.mit.edu	36	7	63806202	63806202	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013746	exon5	c.A2085G	p.E695E	.	.	.
ZNF138	7697	broad.mit.edu	36	7	63929802	63929802	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006524	exon3	c.A669G	p.K223K	.	.	.
ZNF273	10793	broad.mit.edu	36	7	64025521	64025521	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021148	exon4	c.C380A	p.S127Y	.	.	.
GUSB	2990	broad.mit.edu	36	7	65070278	65070278	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000181	exon10	c.G1528A	p.D510N	.	.	.
TYW1	55253	broad.mit.edu	36	7	66185957	66185957	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018264	exon11	c.T1380C	p.F460F	.	.	.
AUTS2	26053	broad.mit.edu	36	7	69865908	69865908	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015570	exon7	c.G859T	p.E287X	.	.	.
FKBP6	8468	broad.mit.edu	36	7	72393256	72393256	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003602	exon7	c.C832T	p.R278X	.	.	.
BAZ1B	9031	broad.mit.edu	36	7	72495065	72495065	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032408	exon18	c.G4020A	p.R1340R	.	.	.
BAZ1B	9031	broad.mit.edu	36	7	72541509	72541509	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032408	exon6	c.A842C	p.K281T	.	.	.
HIP1	3092	broad.mit.edu	36	7	75024928	75024928	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005338	exon16	c.C1547T	p.S516L	.	.	.
DTX2	113878	broad.mit.edu	36	7	75947923	75947923	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102595	exon2	c.T161A	p.F54Y	.	.	.
PION	54103	broad.mit.edu	36	7	76848567	76848567	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017439	exon8	c.A567G	p.G189G	.	.	.
PTPN12	5782	broad.mit.edu	36	7	77106484	77106484	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001131009	exon17	c.G1904A	p.R635Q	.	.	.
MAGI2	9863	broad.mit.edu	36	7	77811070	77811070	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012301	exon9	c.C1369T	p.P457S	.	.	.
CACNA2D1	781	broad.mit.edu	36	7	81427078	81427078	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000722	exon37	c.C2970A	p.I990I	.	.	.
PCLO	27445	broad.mit.edu	36	7	82225956	82225956	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033026	exon25	c.C15300A	p.F5100L	.	.	.
PCLO	27445	broad.mit.edu	36	7	82227926	82227926	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033026	exon24	c.C15253T	p.R5085X	.	.	.
PCLO	27445	broad.mit.edu	36	7	82433489	82433489	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033026	exon4	c.A3551C	p.K1184T	.	.	.
PCLO	27445	broad.mit.edu	36	7	82601560	82601560	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033026	exon3	c.A3242C	p.E1081A	.	.	.
SEMA3E	9723	broad.mit.edu	36	7	82863925	82863925	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012431	exon12	c.G1423T	p.E475X	.	.	.
SEMA3A	10371	broad.mit.edu	36	7	83602053	83602053	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006080	exon2	c.T263G	p.F88C	.	.	.
SEMA3A	10371	broad.mit.edu	36	7	83661790	83661790	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006080	exon1	c.A49G	p.T17A	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84480040	84480040	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152754	exon15	c.G1762A	p.E588K	.	.	.
SUN1	23353	broad.mit.edu	36	7	858779	858779	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130965	exon8	c.C859T	p.R287X	.	.	.
GRM3	2913	broad.mit.edu	36	7	86306776	86306776	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000840	exon4	c.C2010T	p.F670F	.	.	.
SUN1	23353	broad.mit.edu	36	7	864107	864107	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130965	exon13	c.C1511T	p.A504V	.	.	.
SUN1	23353	broad.mit.edu	36	7	866347	866347	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130965	exon14	c.C1581T	p.G527G	.	.	.
RUNDC3B	154661	broad.mit.edu	36	7	87245077	87245077	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134405	exon8	c.C826T	p.R276X	.	.	.
RUNDC3B	154661	broad.mit.edu	36	7	87274746	87274746	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134405	exon9	c.G1079A	p.R360Q	.	.	.
SLC25A40	55972	broad.mit.edu	36	7	87317177	87317177	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018843	exon6	c.G287A	p.R96Q	.	.	.
NXPH1	30010	broad.mit.edu	36	7	8757262	8757262	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152745	exon3	c.G154A	p.D52N	.	.	.
ADAM22	53616	broad.mit.edu	36	7	87600193	87600193	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021722	exon12	c.C1068T	p.G356G	.	.	.
ADAM22	53616	broad.mit.edu	36	7	87603245	87603245	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021722	exon14	c.G1183A	p.E395K	.	.	.
STEAP4	79689	broad.mit.edu	36	7	87749935	87749935	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024636	exon3	c.G941A	p.R314Q	.	.	.
MGC26647	219557	broad.mit.edu	36	7	88261862	88261862	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152706	exon2	c.C331A	p.L111I	.	.	.
CLDN12	9069	broad.mit.edu	36	7	89879980	89879980	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012129	exon3	c.C54T	p.I18I	.	.	.
CDK14	5218	broad.mit.edu	36	7	90422992	90422992	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012395	exon8	c.G817A	p.E273K	.	.	.
FZD1	8321	broad.mit.edu	36	7	90733286	90733286	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003505	exon1	c.C1155T	p.F385F	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91468248	91468248	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147185	exon8	c.G1081T	p.E361X	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91479709	91479709	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147185	exon9	c.C3349T	p.R1117C	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91564458	91564458	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147185	exon41	c.C10225T	p.R3409C	.	.	.
ANKIB1	54467	broad.mit.edu	36	7	91858473	91858473	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019004	exon16	c.C2110T	p.R704C	.	.	.
C7orf64	84060	broad.mit.edu	36	7	91996140	91996140	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032120	exon1	c.A77C	p.K26T	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92598990	92598990	+	Nonsense_Mutation	SNP	G	A	A	rs4729075	by-hapmap	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152703	exon5	c.C4231T	p.R1411X	.	.	.
CALCR	799	broad.mit.edu	36	7	92893835	92893835	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001742	exon14	c.C1194A	p.V398V	.	.	.
PON3	5446	broad.mit.edu	36	7	94839497	94839497	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000940	exon4	c.A291G	p.A97A	.	.	.
PDK4	5166	broad.mit.edu	36	7	95052903	95052903	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002612	exon11	c.G1222T	p.E408X	.	.	.
DYNC1I1	1780	broad.mit.edu	36	7	95280520	95280520	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004411	exon4	c.G300A	p.S100S	.	.	.
SLC25A13	10165	broad.mit.edu	36	7	95651659	95651659	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014251	exon11	c.C1043A	p.P348H	.	.	.
SHFM1	7979	broad.mit.edu	36	7	96162083	96162083	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006304	exon2	c.G133A	p.D45N	.	.	.
LMTK2	22853	broad.mit.edu	36	7	97654167	97654167	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014916	exon9	c.C919T	p.R307X	.	.	.
LMTK2	22853	broad.mit.edu	36	7	97659251	97659251	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014916	exon11	c.C1538T	p.S513L	.	.	.
ARPC1A	10552	broad.mit.edu	36	7	98779974	98779974	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190996	exon4	c.G250A	p.A84T	.	.	.
CPSF4	10898	broad.mit.edu	36	7	98889553	98889553	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006693	exon7	c.C599T	p.S200L	.	.	.
ZNF789	285989	broad.mit.edu	36	7	98922431	98922431	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213603	exon5	c.G662T	p.R221I	.	.	.
ZNF789	285989	broad.mit.edu	36	7	98922613	98922613	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213603	exon5	c.G844T	p.E282X	.	.	.
ZNF789	285989	broad.mit.edu	36	7	98922926	98922926	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213603	exon5	c.G1157A	p.R386Q	.	.	.
CYP3A4	1576	broad.mit.edu	36	7	99197744	99197744	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017460	exon11	c.C1109T	p.A370V	.	.	.
GJC3	349149	broad.mit.edu	36	7	99364616	99364616	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181538	exon1	c.G564A	p.K188K	.	.	.
TAF6	6878	broad.mit.edu	36	7	99546854	99546854	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005641	exon10	c.G927T	p.M309I	.	.	.
C20orf94	128710	broad.mit.edu	36	20	10386866	10386866	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009608	exon2	c.A14C	p.K5T	.	.	.
JAG1	182	broad.mit.edu	36	20	10574067	10574067	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000214	exon16	c.G2050A	p.D684N	JAG1,lung,NS,Substitution - Missense,0	.	.
BTBD3	22903	broad.mit.edu	36	20	11847074	11847074	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014962	exon1	c.G151A	p.E51K	.	.	.
SPTLC3	55304	broad.mit.edu	36	20	13055243	13055243	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018327	exon9	c.C1158T	p.L386L	.	.	.
ISM1	140862	broad.mit.edu	36	20	13208403	13208403	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080826	exon3	c.C501A	p.S167S	.	.	.
ISM1	140862	broad.mit.edu	36	20	13227767	13227767	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080826	exon6	c.C1056T	p.S352S	.	.	.
ESF1	51575	broad.mit.edu	36	20	13646019	13646019	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016649	exon13	c.T2258C	p.F753S	.	.	.
SEL1L2	80343	broad.mit.edu	36	20	13847763	13847763	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025229	exon4	c.A290C	p.K97T	.	.	.
SEL1L2	80343	broad.mit.edu	36	20	13860368	13860368	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025229	exon3	c.G164T	p.R55I	.	.	.
SIRPB2	284759	broad.mit.edu	36	20	1408374	1408374	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122962	exon2	c.C422T	p.S141L	.	.	.
SIRPD	128646	broad.mit.edu	36	20	1480361	1480361	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178460	exon2	c.C397T	p.R133W	.	.	.
SIRPG	55423	broad.mit.edu	36	20	1577804	1577804	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039508	exon2	c.C324T	p.S108S	.	.	.
KIF16B	55614	broad.mit.edu	36	20	16296206	16296206	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199866	exon23	c.T3764C	p.V1255A	.	.	.
KIF16B	55614	broad.mit.edu	36	20	16441483	16441483	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024704	exon5	c.G434A	p.R145Q	.	.	.
CSRP2BP	57325	broad.mit.edu	36	20	18090572	18090572	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020536	exon5	c.G791A	p.R264Q	.	.	.
CSRP2BP	57325	broad.mit.edu	36	20	18113371	18113371	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020536	exon9	c.C2110A	p.L704M	.	.	.
ZNF133	7692	broad.mit.edu	36	20	18243739	18243739	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003434	exon7	c.G241A	p.D81N	.	.	.
RBBP9	10741	broad.mit.edu	36	20	18418541	18418541	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006606	exon5	c.G428C	p.W143S	.	.	.
DTD1	92675	broad.mit.edu	36	20	18524815	18524815	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080820	exon3	c.G300A	p.E100E	.	.	.
C20orf26	26074	broad.mit.edu	36	20	20004250	20004250	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015585	exon6	c.G557A	p.R186H	.	.	.
C20orf26	26074	broad.mit.edu	36	20	20226871	20226871	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015585	exon25	c.G3263A	p.R1088Q	.	.	.
RALGAPA2	57186	broad.mit.edu	36	20	20568527	20568527	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020343	exon7	c.G568T	p.E190X	.	.	.
PLK1S1	55857	broad.mit.edu	36	20	21161426	21161426	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163022	exon10	c.C1528T	p.R510W	.	.	.
XRN2	22803	broad.mit.edu	36	20	21267706	21267706	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012255	exon14	c.G1258T	p.E420X	.	.	.
CST1	1469	broad.mit.edu	36	20	23676511	23676511	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001898	exon3	c.A368G	p.Y123C	.	.	.
DEFB125	245938	broad.mit.edu	36	20	24778	24778	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153325	exon2	c.A191G	p.Y64C	.	.	.
NINL	22981	broad.mit.edu	36	20	25420121	25420121	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025176	exon11	c.C1351T	p.R451W	.	.	.
NOP56	10528	broad.mit.edu	36	20	2584275	2584275	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006392	exon7	c.C792T	p.I264I	.	.	.
CPXM1	56265	broad.mit.edu	36	20	2722888	2722888	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184699	exon14	c.T1931C	p.V644A	.	.	.
VPS16	64601	broad.mit.edu	36	20	2793219	2793219	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080413	exon15	c.G1413A	p.T471T	.	.	.
DEFB119	245932	broad.mit.edu	36	20	29428897	29428897	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153289	exon2	c.G68A	p.R23H	.	.	.
DEFB121	245934	broad.mit.edu	36	20	29456491	29456491	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011878	exon2	c.A117C	p.V39V	.	.	.
TPX2	22974	broad.mit.edu	36	20	29821867	29821867	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012112	exon6	c.A417C	p.K139N	.	.	.
TPX2	22974	broad.mit.edu	36	20	29845471	29845471	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012112	exon14	c.G1669T	p.E557X	.	.	.
TTLL9	164395	broad.mit.edu	36	20	29988921	29988921	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008409	exon13	c.C1066T	p.L356F	.	.	.
C20orf160	140706	broad.mit.edu	36	20	30080495	30080495	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080625	exon7	c.C1106T	p.A369V	.	.	.
BPIL3	128859	broad.mit.edu	36	20	31084473	31084473	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174897	exon2	c.G120A	p.E40E	.	.	.
C20orf185	359710	broad.mit.edu	36	20	31121405	31121405	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182658	exon11	c.C1200A	p.I400I	.	.	.
C20orf114	92747	broad.mit.edu	36	20	31343435	31343435	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033197	exon6	c.C577A	p.P193T	.	.	.
CHMP4B	128866	broad.mit.edu	36	20	31902500	31902500	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176812	exon3	c.G450A	p.S150S	.	.	.
DYNLRB1	83658	broad.mit.edu	36	20	32586227	32586227	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014183	exon3	c.C214T	p.R72C	.	.	.
C20orf194	25943	broad.mit.edu	36	20	3259307	3259307	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009984	exon12	c.G1086A	p.K362K	.	.	.
NCOA6	23054	broad.mit.edu	36	20	32766804	32766804	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014071	exon15	c.C6175T	p.R2059X	.	.	.
NCOA6	23054	broad.mit.edu	36	20	32778816	32778816	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014071	exon14	c.G6056A	p.R2019Q	.	.	.
ACSS2	55902	broad.mit.edu	36	20	32934408	32934408	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018677	exon2	c.G329A	p.R110Q	.	.	.
GSS	2937	broad.mit.edu	36	20	32983492	32983492	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000178	exon10	c.C940T	p.P314S	.	.	.
MYL9	10398	broad.mit.edu	36	20	34606770	34606770	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006097	exon2	c.C69T	p.F23F	.	.	.
NDRG3	57446	broad.mit.edu	36	20	34727116	34727116	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032013	exon11	c.G695A	p.R232H	.	.	.
RBL1	5933	broad.mit.edu	36	20	35108983	35108983	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002895	exon12	c.C1492A	p.H498N	.	.	.
C20orf132	140699	broad.mit.edu	36	20	35175900	35175900	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152503	exon19	c.A2599C	p.K867Q	.	.	.
C20orf132	140699	broad.mit.edu	36	20	35190870	35190870	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213632	exon12	c.G1660T	p.D554Y	.	.	.
RPRD1B	58490	broad.mit.edu	36	20	36119361	36119361	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021215	exon4	c.G429T	p.K143N	.	.	.
TGM2	7052	broad.mit.edu	36	20	36201441	36201441	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198951	exon9	c.C1129T	p.R377C	.	.	.
PPP1R16B	26051	broad.mit.edu	36	20	36980247	36980247	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172735	exon10	c.G1102A	p.E368K	.	.	.
SPEF1	25876	broad.mit.edu	36	20	3707443	3707443	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015417	exon5	c.G429T	p.Q143H	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40164213	40164213	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133170	exon27	c.G3736T	p.E1246X	.	.	.
SRSF6	6431	broad.mit.edu	36	20	41522779	41522779	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006275	exon6	c.C697T	p.R233X	.	.	.
RIMS4	140730	broad.mit.edu	36	20	42819028	42819028	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182970	exon5	c.C516T	p.V172V	.	.	.
MATN4	8785	broad.mit.edu	36	20	43363272	43363272	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003833	exon5	c.A773T	p.D258V	.	.	.
SPINLW1	57119	broad.mit.edu	36	20	43604206	43604206	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181502	exon3	c.C345T	p.R115R	.	.	.
WFDC3	140686	broad.mit.edu	36	20	43836489	43836489	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080614	exon7	c.G681T	p.E227D	.	.	.
ZNF335	63925	broad.mit.edu	36	20	44019903	44019903	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022095	exon16	c.C2325T	p.G775G	.	.	.
NCOA5	57727	broad.mit.edu	36	20	44132527	44132527	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020967	exon3	c.C94T	p.R32X	.	.	.
CDH22	64405	broad.mit.edu	36	20	44278914	44278914	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021248	exon4	c.G796A	p.V266I	.	.	.
SLC35C2	51006	broad.mit.edu	36	20	44419808	44419808	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173073	exon3	c.C132T	p.F44F	.	.	.
SLC13A3	64849	broad.mit.edu	36	20	44645680	44645680	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193339	exon8	c.T1007C	p.V336A	.	.	.
TP53RK	112858	broad.mit.edu	36	20	44749107	44749107	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033550	exon2	c.C454T	p.R152X	.	.	.
EYA2	2139	broad.mit.edu	36	20	45159170	45159170	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172110	exon9	c.T844G	p.F282V	.	.	.
ZMYND8	23613	broad.mit.edu	36	20	45308249	45308249	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012408	exon14	c.G2194A	p.E732K	.	.	.
NCOA3	8202	broad.mit.edu	36	20	45709243	45709243	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174087	exon18	c.A3272C	p.K1091T	.	.	.
ARFGEF2	10564	broad.mit.edu	36	20	47055131	47055131	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006420	exon26	c.C3550A	p.L1184M	.	.	.
RASSF2	9770	broad.mit.edu	36	20	4714954	4714954	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170774	exon10	c.C834T	p.F278F	.	.	.
DDX27	55661	broad.mit.edu	36	20	47283274	47283274	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017895	exon10	c.G1149A	p.E383E	.	.	.
B4GALT5	9334	broad.mit.edu	36	20	47689731	47689731	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004776	exon7	c.G808A	p.E270K	.	.	.
ADNP	23394	broad.mit.edu	36	20	48942879	48942879	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015339	exon5	c.A1779G	p.P593P	.	.	.
DPM1	8813	broad.mit.edu	36	20	48986166	48986166	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003859	exon8	c.T604G	p.C202G	.	.	.
TSHZ2	128553	broad.mit.edu	36	20	51304378	51304378	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173485	exon2	c.T974C	p.F325S	.	.	.
ZNF217	7764	broad.mit.edu	36	20	51625842	51625842	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006526	exon3	c.G2868A	p.P956P	.	.	.
ZNF217	7764	broad.mit.edu	36	20	51626699	51626699	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006526	exon3	c.G2011A	p.A671T	.	.	.
ZNF217	7764	broad.mit.edu	36	20	51632319	51632319	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006526	exon1	c.G454A	p.D152N	.	.	.
CYP24A1	1591	broad.mit.edu	36	20	52219543	52219543	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000782	exon4	c.T635G	p.F212C	.	.	.
C20orf107	388799	broad.mit.edu	36	20	54533362	54533362	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012971	exon1	c.G91A	p.E31K	.	.	.
C20orf107	388799	broad.mit.edu	36	20	54533461	54533461	+	Missense_Mutation	SNP	C	A	A	rs2019515	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012971	exon1	c.C190A	p.L64I	.	.	.
C20orf107	388799	broad.mit.edu	36	20	54544672	54544672	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013646	exon2	c.G287A	p.R96H	.	.	.
SPO11	23626	broad.mit.edu	36	20	55341705	55341705	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012444	exon3	c.C300A	p.I100I	.	.	.
CTCFL	140690	broad.mit.edu	36	20	55523117	55523117	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080618	exon7	c.G1267A	p.E423K	.	.	.
PHACTR3	116154	broad.mit.edu	36	20	57751573	57751573	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080672	exon2	c.G135A	p.T45T	.	.	.
SYCP2	10388	broad.mit.edu	36	20	57928809	57928809	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014258	exon4	c.G297T	p.K99N	.	.	.
C20orf177	63939	broad.mit.edu	36	20	57952698	57952698	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190826	exon5	c.G305T	p.R102I	.	.	.
CHGB	1114	broad.mit.edu	36	20	5851275	5851275	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001819	exon4	c.G485T	p.R162I	.	.	.
MCM8	84515	broad.mit.edu	36	20	5896091	5896091	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032485	exon9	c.A885G	p.E295E	.	.	.
SLCO4A1	28231	broad.mit.edu	36	20	60769878	60769878	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016354	exon9	c.T1708G	p.C570G	.	.	.
C20orf54	113278	broad.mit.edu	36	20	693858	693858	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033409	exon2	c.C561T	p.I187I	.	.	.
HAO1	54363	broad.mit.edu	36	20	7812275	7812275	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017545	exon8	c.G1078A	p.V360M	.	.	.
PLCB1	23236	broad.mit.edu	36	20	8300096	8300096	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182734	exon3	c.A245C	p.K82T	.	.	.
PLCB4	5332	broad.mit.edu	36	20	9382067	9382067	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000933	exon29	c.C2918T	p.S973L	.	.	.
PLCB4	5332	broad.mit.edu	36	20	9407604	9407604	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000933	exon36	c.G3533A	p.R1178Q	.	.	.
PAK7	57144	broad.mit.edu	36	20	9509352	9509352	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177990	exon4	c.G430A	p.E144K	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101519259	101519259	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001376	exon6	c.A1112C	p.K371T	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101523645	101523645	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001376	exon9	c.G2641T	p.V881F	.	.	.
TECPR2	9895	broad.mit.edu	36	14	101912883	101912883	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014844	exon2	c.G72A	p.P24P	.	.	.
CDC42BPB	9578	broad.mit.edu	36	14	102516951	102516951	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006035	exon8	c.G1052A	p.R351Q	.	.	.
EIF5	1983	broad.mit.edu	36	14	102872899	102872899	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183004	exon4	c.T287G	p.F96C	.	.	.
EIF5	1983	broad.mit.edu	36	14	102876609	102876609	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183004	exon10	c.A1164C	p.E388D	.	.	.
MARK3	4140	broad.mit.edu	36	14	103003233	103003233	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128919	exon11	c.C1062T	p.Y354Y	.	.	.
C14orf153	84334	broad.mit.edu	36	14	103126285	103126285	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032374	exon5	c.G530A	p.R177H	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104478877	104478877	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138420	exon7	c.C13956T	p.I4652I	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104479077	104479077	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138420	exon7	c.G13756A	p.D4586N	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104479347	104479347	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138420	exon7	c.G13486A	p.D4496N	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104483869	104483869	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138420	exon7	c.C8964T	p.F2988F	.	.	.
OR4K5	79317	broad.mit.edu	36	14	19458956	19458956	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005483	exon1	c.G351A	p.S117S	.	.	.
OR4K1	79544	broad.mit.edu	36	14	19473816	19473816	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004063	exon1	c.T151G	p.F51V	.	.	.
OR4K1	79544	broad.mit.edu	36	14	19473892	19473892	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004063	exon1	c.T227C	p.F76S	.	.	.
OR11G2	390439	broad.mit.edu	36	14	19735812	19735812	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005503	exon1	c.C478T	p.R160X	.	.	.
OR11H4	390442	broad.mit.edu	36	14	19781751	19781751	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004479	exon1	c.C961T	p.R321C	.	.	.
RNASE11	122651	broad.mit.edu	36	14	20122012	20122012	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145250	exon3	c.A462G	p.E154E	.	.	.
TOX4	9878	broad.mit.edu	36	14	21030569	21030569	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014828	exon7	c.T954C	p.P318P	.	.	.
ABHD4	63874	broad.mit.edu	36	14	22142221	22142221	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022060	exon3	c.G199A	p.D67N	.	.	.
ABHD4	63874	broad.mit.edu	36	14	22142807	22142807	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022060	exon4	c.G623A	p.R208Q	.	.	.
SLC22A17	51310	broad.mit.edu	36	14	22886967	22886967	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020372	exon6	c.A917C	p.K306T	.	.	.
MYH7	4625	broad.mit.edu	36	14	22964462	22964462	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000257	exon21	c.C2292A	p.F764L	.	.	.
MYH7	4625	broad.mit.edu	36	14	22967586	22967586	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000257	exon15	c.G1541A	p.G514D	.	.	.
MYH7	4625	broad.mit.edu	36	14	22972671	22972671	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000257	exon3	c.C111A	p.V37V	.	.	.
CPNE6	9362	broad.mit.edu	36	14	23613759	23613759	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006032	exon7	c.T587C	p.V196A	.	.	.
PCK2	5106	broad.mit.edu	36	14	23637365	23637365	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018073	exon3	c.A389C	p.Q130P	.	.	.
DCAF11	80344	broad.mit.edu	36	14	23654690	23654690	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163484	exon2	c.C47T	p.P16L	.	.	.
PSME1	5720	broad.mit.edu	36	14	23676586	23676586	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176783	exon5	c.A264G	p.E88E	.	.	.
FAM158A	51016	broad.mit.edu	36	14	23678598	23678598	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016049	exon4	c.T341G	p.I114S	.	.	.
IRF9	10379	broad.mit.edu	36	14	23702139	23702139	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006084	exon3	c.G305A	p.R102H	.	.	.
TSSK4	283629	broad.mit.edu	36	14	23745123	23745123	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174944	exon1	c.G154A	p.A52T	.	.	.
RABGGTA	5875	broad.mit.edu	36	14	23807611	23807611	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004581	exon9	c.C955T	p.R319C	.	.	.
RIPK3	11035	broad.mit.edu	36	14	23876235	23876235	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006871	exon8	c.C1172T	p.S391L	.	.	.
FOXG1	2290	broad.mit.edu	36	14	28306925	28306925	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005249	exon1	c.G689A	p.R230H	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29264629	29264629	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002742	exon2	c.C267T	p.F89F	.	.	.
G2E3	55632	broad.mit.edu	36	14	30131332	30131332	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017769	exon5	c.G290A	p.R97Q	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32084918	32084918	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004274	exon4	c.A1308C	p.K436N	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32312844	32312844	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004274	exon12	c.G3582T	p.K1194N	.	.	.
BAZ1A	11177	broad.mit.edu	36	14	34401265	34401265	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013448	exon3	c.G128A	p.R43Q	.	.	.
PPP2R3C	55012	broad.mit.edu	36	14	34638277	34638277	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017917	exon7	c.C638A	p.S213Y	.	.	.
RALGAPA1	253959	broad.mit.edu	36	14	35111524	35111524	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194301	exon37	c.A5843C	p.K1948T	.	.	.
SLC25A21	89874	broad.mit.edu	36	14	36222794	36222794	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171170	exon9	c.A828G	p.R276R	.	.	.
SSTR1	6751	broad.mit.edu	36	14	37748862	37748862	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001049	exon3	c.G517A	p.V173M	.	.	.
LRFN5	145581	broad.mit.edu	36	14	41426597	41426597	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152447	exon3	c.G1019T	p.G340V	.	.	.
FSCB	84075	broad.mit.edu	36	14	44044626	44044626	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032135	exon1	c.G1315T	p.E439X	.	.	.
FSCB	84075	broad.mit.edu	36	14	44045907	44045907	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032135	exon1	c.G34T	p.E12X	.	.	.
C14orf28	122525	broad.mit.edu	36	14	44439574	44439574	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017923	exon2	c.C186A	p.F62L	.	.	.
FANCM	57697	broad.mit.edu	36	14	44715534	44715534	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020937	exon14	c.C3827T	p.S1276L	.	.	.
MDGA2	161357	broad.mit.edu	36	14	46574038	46574038	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182830	exon8	c.A851G	p.Y284C	.	.	.
SDCCAG1	9147	broad.mit.edu	36	14	49365215	49365215	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004713	exon14	c.G1293A	p.E431E	.	.	.
SDCCAG1	9147	broad.mit.edu	36	14	49377302	49377302	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004713	exon5	c.A390C	p.V130V	.	.	.
CDKL1	8814	broad.mit.edu	36	14	49878649	49878649	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004196	exon4	c.G408A	p.T136T	.	.	.
PYGL	5836	broad.mit.edu	36	14	50441968	50441968	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002863	exon20	c.C2436T	p.F812F	.	.	.
C14orf166	51637	broad.mit.edu	36	14	51540692	51540692	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016039	exon7	c.C562A	p.L188I	.	.	.
STYX	6815	broad.mit.edu	36	14	52293793	52293793	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145251	exon6	c.G310T	p.E104X	.	.	.
DDHD1	80821	broad.mit.edu	36	14	52599517	52599517	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160148	exon7	c.C1660T	p.R554W	.	.	.
WDHD1	11169	broad.mit.edu	36	14	54537099	54537099	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007086	exon10	c.A814T	p.K272X	.	.	.
WDHD1	11169	broad.mit.edu	36	14	54545131	54545131	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007086	exon5	c.G398A	p.R133Q	.	.	.
KTN1	3895	broad.mit.edu	36	14	55209152	55209152	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004986	exon37	c.G3496A	p.E1166K	.	.	.
PELI2	57161	broad.mit.edu	36	14	55833216	55833216	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021255	exon6	c.G842A	p.R281Q	.	.	.
C14orf101	54916	broad.mit.edu	36	14	56152440	56152440	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017799	exon8	c.G883A	p.E295K	.	.	.
EXOC5	10640	broad.mit.edu	36	14	56745124	56745124	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006544	exon18	c.C2083T	p.R695C	.	.	.
ARID4A	5926	broad.mit.edu	36	14	57902661	57902661	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002892	exon22	c.G3483A	p.P1161P	.	.	.
KIAA0586	9786	broad.mit.edu	36	14	57980568	57980568	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014749	exon6	c.C729T	p.H243H	.	.	.
KIAA0586	9786	broad.mit.edu	36	14	57994312	57994312	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014749	exon11	c.C1445T	p.S482F	.	.	.
DACT1	51339	broad.mit.edu	36	14	58182358	58182358	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079520	exon4	c.G1153T	p.E385X	.	.	.
SIX6	4990	broad.mit.edu	36	14	60046117	60046117	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007374	exon1	c.C248T	p.S83L	.	.	.
TRMT5	57570	broad.mit.edu	36	14	60512294	60512294	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020810	exon4	c.G1096T	p.E366X	.	.	.
TRMT5	57570	broad.mit.edu	36	14	60515734	60515734	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020810	exon2	c.G635A	p.R212Q	.	.	.
SNAPC1	6617	broad.mit.edu	36	14	61314579	61314579	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003082	exon6	c.G730T	p.E244X	.	.	.
SNAPC1	6617	broad.mit.edu	36	14	61315339	61315339	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003082	exon7	c.A783G	p.S261S	.	.	.
RHOJ	57381	broad.mit.edu	36	14	62827351	62827351	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020663	exon5	c.C501T	p.I167I	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63517196	63517196	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015180	exon15	c.G1641T	p.K547N	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63564241	63564241	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015180	exon43	c.G6691A	p.E2231K	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63588616	63588616	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015180	exon48	c.G8232T	p.K2744N	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63589693	63589693	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015180	exon48	c.G9309T	p.K3103N	.	.	.
ESR2	2100	broad.mit.edu	36	14	63816527	63816527	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001437	exon3	c.G460A	p.D154N	.	.	.
AKAP5	9495	broad.mit.edu	36	14	64005700	64005700	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004857	exon2	c.G835T	p.E279X	.	.	.
AKAP5	9495	broad.mit.edu	36	14	64005805	64005805	+	Nonsense_Mutation	SNP	G	T	T	rs34433837	by-cluster,by-frequency	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004857	exon2	c.G940T	p.E314X	.	.	.
SPTB	6710	broad.mit.edu	36	14	64322312	64322312	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024858	exon16	c.C3672A	p.V1224V	.	.	.
PLEK2	26499	broad.mit.edu	36	14	66929689	66929689	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016445	exon4	c.G412A	p.D138N	.	.	.
ARG2	384	broad.mit.edu	36	14	67178679	67178679	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172	exon3	c.G208T	p.D70Y	.	.	.
ZFYVE26	23503	broad.mit.edu	36	14	67319517	67319517	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015346	exon21	c.T4105G	p.F1369V	.	.	.
ZFYVE26	23503	broad.mit.edu	36	14	67338614	67338614	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015346	exon10	c.A1574G	p.K525R	.	.	.
EXD2	55218	broad.mit.edu	36	14	68765328	68765328	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193363	exon3	c.A376C	p.M126L	.	.	.
SLC8A3	6547	broad.mit.edu	36	14	69703549	69703549	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033262	exon2	c.C1344T	p.F448F	.	.	.
ADAM21	8747	broad.mit.edu	36	14	69994776	69994776	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003813	exon1	c.G807T	p.M269I	.	.	.
ADAM21	8747	broad.mit.edu	36	14	69994874	69994874	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003813	exon1	c.C905A	p.S302X	.	.	.
ADAM20	8748	broad.mit.edu	36	14	70060037	70060037	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003814	exon2	c.G1341A	p.P447P	.	.	.
SIPA1L1	26037	broad.mit.edu	36	14	71221915	71221915	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015556	exon10	c.G3188A	p.R1063Q	.	.	.
PSEN1	5663	broad.mit.edu	36	14	72729293	72729293	+	Missense_Mutation	SNP	C	T	T	rs63750526	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000021	exon7	c.C737T	p.A246V	.	.	.
ZNF410	57862	broad.mit.edu	36	14	73434696	73434696	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021188	exon5	c.G558T	p.K186N	.	.	.
COQ6	51004	broad.mit.edu	36	14	73494656	73494656	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182476	exon5	c.C535T	p.P179S	.	.	.
VSX2	338917	broad.mit.edu	36	14	73796077	73796077	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182894	exon4	c.G599A	p.R200Q	.	.	.
VRTN	55237	broad.mit.edu	36	14	73893820	73893820	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018228	exon2	c.G581A	p.R194H	.	.	.
FAM164C	79696	broad.mit.edu	36	14	74608066	74608066	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024643	exon2	c.C1037T	p.S346L	.	.	.
NEK9	91754	broad.mit.edu	36	14	74627731	74627731	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033116	exon19	c.C2437T	p.R813X	.	.	.
C14orf1	11161	broad.mit.edu	36	14	75191016	75191016	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007176	exon3	c.C190T	p.R64C	.	.	.
C14orf179	112752	broad.mit.edu	36	14	75558488	75558488	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102564	exon3	c.G213A	p.S71S	.	.	.
C14orf179	112752	broad.mit.edu	36	14	75612694	75612694	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052873	exon4	c.G217A	p.G73S	.	.	.
TMED8	283578	broad.mit.edu	36	14	76879357	76879357	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213601	exon5	c.T677C	p.V226A	.	.	.
VIPAR	63894	broad.mit.edu	36	14	76973920	76973920	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022067	exon13	c.C820A	p.L274I	.	.	.
NRXN3	9369	broad.mit.edu	36	14	78251208	78251208	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004796	exon5	c.G898T	p.G300X	.	.	.
C14orf145	145508	broad.mit.edu	36	14	80436077	80436077	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152446	exon6	c.G530A	p.R177H	.	.	.
TSHR	7253	broad.mit.edu	36	14	80675914	80675914	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000369	exon9	c.T831G	p.L277L	.	.	.
TSHR	7253	broad.mit.edu	36	14	80679256	80679256	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000369	exon10	c.C1101T	p.G367G	.	.	.
STON2	85439	broad.mit.edu	36	14	80932020	80932020	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033104	exon2	c.C344T	p.S115F	.	.	.
FLRT2	23768	broad.mit.edu	36	14	85157738	85157738	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013231	exon2	c.G127A	p.D43N	.	.	.
GPR65	8477	broad.mit.edu	36	14	87547718	87547718	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003608	exon2	c.C774T	p.F258F	.	.	.
KCNK10	54207	broad.mit.edu	36	14	87862529	87862529	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021161	exon1	c.C24A	p.F8L	.	.	.
ZC3H14	79882	broad.mit.edu	36	14	88112004	88112004	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160104	exon8	c.G1090T	p.E364X	.	.	.
C14orf102	55051	broad.mit.edu	36	14	89838929	89838929	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017970	exon6	c.G1299A	p.S433S	.	.	.
TTC7B	145567	broad.mit.edu	36	14	90225695	90225695	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010854	exon7	c.G892A	p.G298R	.	.	.
RPS6KA5	9252	broad.mit.edu	36	14	90483546	90483546	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004755	exon4	c.G496A	p.E166K	.	.	.
CATSPERB	79820	broad.mit.edu	36	14	91244241	91244241	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024764	exon6	c.C463T	p.R155X	.	.	.
TC2N	123036	broad.mit.edu	36	14	91321315	91321315	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128596	exon11	c.T1306G	p.F436V	.	.	.
FBLN5	10516	broad.mit.edu	36	14	91419166	91419166	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006329	exon8	c.C747T	p.D249D	.	.	.
TRIP11	9321	broad.mit.edu	36	14	91540565	91540565	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004239	exon11	c.G3508T	p.D1170Y	.	.	.
RIN3	79890	broad.mit.edu	36	14	92195355	92195355	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024832	exon7	c.C2123T	p.S708L	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93158892	93158892	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020818	exon30	c.G5029A	p.D1677N	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93179681	93179681	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020818	exon35	c.G5515T	p.E1839X	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93190067	93190067	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020818	exon38	c.G5811A	p.S1937S	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93209456	93209456	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020818	exon42	c.G6229T	p.D2077Y	.	.	.
FAM181A	90050	broad.mit.edu	36	14	93464423	93464423	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138344	exon3	c.C225T	p.F75F	.	.	.
PPP4R4	57718	broad.mit.edu	36	14	93744629	93744629	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020958	exon3	c.G267A	p.T89T	.	.	.
PPP4R4	57718	broad.mit.edu	36	14	93770713	93770713	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058237	exon7	c.C685T	p.R229X	.	.	.
PPP4R4	57718	broad.mit.edu	36	14	93795426	93795426	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058237	exon19	c.G2094T	p.E698D	.	.	.
SERPINA11	256394	broad.mit.edu	36	14	93984524	93984524	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080451	exon2	c.A341G	p.D114G	.	.	.
SERPINA5	5104	broad.mit.edu	36	14	94123992	94123992	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000624	exon3	c.G540A	p.T180T	.	.	.
CLMN	79789	broad.mit.edu	36	14	94749314	94749314	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024734	exon6	c.G603A	p.T201T	.	.	.
ATG2B	55102	broad.mit.edu	36	14	95861748	95861748	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018036	exon15	c.G2428T	p.E810X	.	.	.
AK7	122481	broad.mit.edu	36	14	95944991	95944991	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152327	exon4	c.C458T	p.S153L	.	.	.
AK7	122481	broad.mit.edu	36	14	95994221	95994221	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152327	exon12	c.G1276A	p.E426K	.	.	.
AK7	122481	broad.mit.edu	36	14	96023055	96023055	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152327	exon17	c.G2042A	p.R681K	.	.	.
PAPOLA	10914	broad.mit.edu	36	14	96080254	96080254	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032632	exon15	c.G1305A	p.T435T	.	.	.
SETD3	84193	broad.mit.edu	36	14	98995216	98995216	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032233	exon5	c.A405C	p.K135N	.	.	.
EML1	2009	broad.mit.edu	36	14	99450747	99450747	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008707	exon16	c.A1769G	p.D590G	.	.	.
WARS	7453	broad.mit.edu	36	14	99882864	99882864	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173701	exon7	c.T798G	p.I266M	.	.	.
GAB4	128954	broad.mit.edu	36	22	15852793	15852793	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037814	exon2	c.A448C	p.I150L	.	.	.
BCL2L13	23786	broad.mit.edu	36	22	16546077	16546077	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015367	exon3	c.A219C	p.E73D	.	.	.
CLTCL1	8218	broad.mit.edu	36	22	17600769	17600769	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001835	exon9	c.C1441T	p.R481W	.	.	.
HIRA	7290	broad.mit.edu	36	22	17778255	17778255	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003325	exon2	c.C84T	p.F28F	.	.	.
TBX1	6899	broad.mit.edu	36	22	18132503	18132503	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080647	exon6	c.G707T	p.R236I	.	.	.
RANBP1	5902	broad.mit.edu	36	22	18494575	18494575	+	Read-through	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002882	exon6	c.A606C	p.X202Y	.	.	.
CRKL	1399	broad.mit.edu	36	22	19618189	19618189	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005207	exon2	c.A434C	p.K145T	.	.	.
ZNF280A	129025	broad.mit.edu	36	22	21199292	21199292	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080740	exon2	c.G663A	p.Q221Q	.	.	.
PIWIL3	440822	broad.mit.edu	36	22	23450970	23450970	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008496	exon18	c.G2142A	p.S714S	.	.	.
PIWIL3	440822	broad.mit.edu	36	22	23480044	23480044	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008496	exon8	c.C914T	p.A305V	.	.	.
SGSM1	129049	broad.mit.edu	36	22	23645953	23645953	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098497	exon24	c.C3186A	p.F1062L	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24494985	24494985	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032608	exon4	c.G1102A	p.D368N	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24678311	24678311	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032608	exon38	c.C5892T	p.I1964I	.	.	.
SEZ6L	23544	broad.mit.edu	36	22	25036726	25036726	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184776	exon7	c.C1605T	p.S535S	.	.	.
TFIP11	24144	broad.mit.edu	36	22	25232803	25232803	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012143	exon5	c.G301A	p.E101K	.	.	.
MN1	4330	broad.mit.edu	36	22	26476921	26476921	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002430	exon2	c.C3945T	p.F1315F	.	.	.
PITPNB	23760	broad.mit.edu	36	22	26622579	26622579	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012399	exon6	c.C333T	p.I111I	.	.	.
THOC5	8563	broad.mit.edu	36	22	28265452	28265452	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003678	exon6	c.G466T	p.E156X	.	.	.
NIPSNAP1	8508	broad.mit.edu	36	22	28284909	28284909	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003634	exon9	c.G740A	p.R247Q	.	.	.
SEC14L3	266629	broad.mit.edu	36	22	29194665	29194665	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174975	exon5	c.C253T	p.P85S	.	.	.
EIF4ENIF1	56478	broad.mit.edu	36	22	30184494	30184494	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019843	exon7	c.C930A	p.F310L	.	.	.
EIF4ENIF1	56478	broad.mit.edu	36	22	30189810	30189810	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019843	exon5	c.C442T	p.R148C	.	.	.
SFI1	9814	broad.mit.edu	36	22	30311079	30311079	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014775	exon13	c.G1279A	p.E427K	.	.	.
DEPDC5	9681	broad.mit.edu	36	22	30545074	30545074	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014662	exon22	c.G1733T	p.G578V	.	.	.
BPIL2	254240	broad.mit.edu	36	22	31141962	31141962	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174932	exon14	c.A1341G	p.G447G	.	.	.
MYH9	4627	broad.mit.edu	36	22	35052586	35052586	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002473	exon5	c.G585A	p.A195A	.	.	.
TRIOBP	11078	broad.mit.edu	36	22	36449549	36449549	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039141	exon7	c.G1040A	p.R347Q	.	.	.
TRIOBP	11078	broad.mit.edu	36	22	36485448	36485448	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138632	exon8	c.A1264G	p.T422A	.	.	.
PLA2G6	8398	broad.mit.edu	36	22	36895198	36895198	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199562	exon2	c.A182G	p.N61S	.	.	.
DDX17	10521	broad.mit.edu	36	22	37220681	37220681	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098504	exon8	c.C1114T	p.R372C	.	.	.
MGAT3	4248	broad.mit.edu	36	22	38213342	38213342	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098270	exon1	c.C44T	p.A15V	.	.	.
MGAT3	4248	broad.mit.edu	36	22	38213952	38213952	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098270	exon1	c.C654T	p.F218F	.	.	.
ADSL	158	broad.mit.edu	36	22	39075845	39075845	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000026	exon2	c.G217A	p.D73N	.	.	.
SLC25A17	10478	broad.mit.edu	36	22	39503042	39503042	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006358	exon7	c.C641T	p.A214V	.	.	.
EP300	2033	broad.mit.edu	36	22	39863719	39863719	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001429	exon8	c.G1739A	p.R580Q	.	.	.
SREBF2	6721	broad.mit.edu	36	22	40592983	40592983	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004599	exon2	c.A291G	p.L97L	.	.	.
CENPM	79019	broad.mit.edu	36	22	40671229	40671229	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024053	exon4	c.C256T	p.R86C	.	.	.
SEPT3	55964	broad.mit.edu	36	22	40720275	40720275	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145733	exon9	c.C901T	p.R301X	.	.	.
NAGA	4668	broad.mit.edu	36	22	40787013	40787013	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000262	exon8	c.A962C	p.K321T	.	.	.
TCF20	6942	broad.mit.edu	36	22	40936499	40936499	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005650	exon1	c.G4757T	p.R1586I	.	.	.
ARFGAP3	26286	broad.mit.edu	36	22	41536859	41536859	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014570	exon12	c.C1100A	p.S367Y	.	.	.
EFCAB6	64800	broad.mit.edu	36	22	42303642	42303642	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198856	exon24	c.A2832G	p.Q944Q	.	.	.
EFCAB6	64800	broad.mit.edu	36	22	42353882	42353882	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198856	exon18	c.C1787A	p.S596Y	.	.	.
EFCAB6	64800	broad.mit.edu	36	22	42405343	42405343	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198856	exon11	c.C829T	p.R277X	.	.	.
EFCAB6	64800	broad.mit.edu	36	22	42509461	42509461	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022785	exon3	c.G71T	p.R24I	.	.	.
PNPLA3	80339	broad.mit.edu	36	22	42673369	42673369	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025225	exon9	c.C1220T	p.S407F	.	.	.
FBLN1	2192	broad.mit.edu	36	22	44309785	44309785	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006487	exon8	c.G826A	p.D276N	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45031129	45031129	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006071	exon1	c.T6755G	p.V2252G	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45035866	45035866	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006071	exon1	c.A2018T	p.K673I	.	.	.
BRD1	23774	broad.mit.edu	36	22	48603437	48603437	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014577	exon1	c.T533C	p.V178A	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48941380	48941380	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164105	exon25	c.G3401A	p.R1134Q	.	.	.
DNMT1	1786	broad.mit.edu	36	19	10126092	10126092	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130823	exon22	c.G1896A	p.T632T	.	.	.
DNMT1	1786	broad.mit.edu	36	19	10128124	10128124	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130823	exon18	c.G1342A	p.E448K	.	.	.
KEAP1	9817	broad.mit.edu	36	19	10460902	10460902	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203500	exon5	c.G1674A	p.G558G	.	.	.
KRI1	65095	broad.mit.edu	36	19	10529734	10529734	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023008	exon14	c.G1291A	p.D431N	.	.	.
SLC44A2	57153	broad.mit.edu	36	19	10603729	10603729	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020428	exon10	c.C720A	p.V240V	.	.	.
LDLR	3949	broad.mit.edu	36	19	11087825	11087825	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195802	exon10	c.A1279G	p.N427D	.	.	.
ZNF627	199692	broad.mit.edu	36	19	11588838	11588838	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145295	exon4	c.G520T	p.E174X	.	.	.
ZNF627	199692	broad.mit.edu	36	19	11589622	11589622	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145295	exon4	c.G1304A	p.R435Q	.	.	.
ZNF441	126068	broad.mit.edu	36	19	11752955	11752955	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152355	exon4	c.G1316T	p.R439I	.	.	.
ZNF441	126068	broad.mit.edu	36	19	11753194	11753194	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152355	exon4	c.C1555T	p.R519X	.	.	.
ZNF491	126069	broad.mit.edu	36	19	11778796	11778796	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152356	exon3	c.G1028A	p.R343Q	.	.	.
ZNF440	126070	broad.mit.edu	36	19	11803553	11803553	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152357	exon4	c.C562T	p.R188X	.	.	.
ZNF440	126070	broad.mit.edu	36	19	11804057	11804057	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152357	exon4	c.C1066T	p.Q356X	.	.	.
ZNF700	90592	broad.mit.edu	36	19	11920564	11920564	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144566	exon4	c.G725T	p.R242I	.	.	.
ZNF763	284390	broad.mit.edu	36	19	11950650	11950650	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012753	exon4	c.G920T	p.R307I	.	.	.
ZNF433	163059	broad.mit.edu	36	19	11987117	11987117	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080411	exon4	c.G1565A	p.R522Q	.	.	.
ZNF878	729747	broad.mit.edu	36	19	12015704	12015704	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080404	exon5	c.G1653T	p.E551D	.	.	.
ZNF44	51710	broad.mit.edu	36	19	12245807	12245807	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016264	exon4	c.G263A	p.R88Q	.	.	.
ZNF563	147837	broad.mit.edu	36	19	12290529	12290529	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145276	exon4	c.G1310A	p.R437Q	.	.	.
ZNF442	79973	broad.mit.edu	36	19	12321717	12321717	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030824	exon6	c.G1682A	p.R561Q	.	.	.
ZNF443	10224	broad.mit.edu	36	19	12403084	12403084	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005815	exon4	c.G902T	p.R301I	.	.	.
ZNF709	163051	broad.mit.edu	36	19	12435841	12435841	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152601	exon4	c.G1895A	p.R632Q	.	.	.
ZNF709	163051	broad.mit.edu	36	19	12436430	12436430	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152601	exon4	c.C1306T	p.R436X	.	.	.
ZNF564	163050	broad.mit.edu	36	19	12498295	12498295	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144976	exon4	c.A1627G	p.I543V	.	.	.
ZNF490	57474	broad.mit.edu	36	19	12553248	12553248	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020714	exon5	c.G641A	p.R214K	.	.	.
BEST2	54831	broad.mit.edu	36	19	12726712	12726712	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017682	exon4	c.G503A	p.R168H	.	.	.
MAST1	22983	broad.mit.edu	36	19	12830202	12830202	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014975	exon11	c.G1104A	p.P368P	.	.	.
TRMT1	55621	broad.mit.edu	36	19	13087990	13087990	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017722	exon1	c.A224C	p.N75T	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13226981	13226981	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174080	exon29	c.C4686T	p.F1562F	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13424744	13424744	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174080	exon3	c.G485A	p.G162D	.	.	.
LPHN1	22859	broad.mit.edu	36	19	14124675	14124675	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014921	exon19	c.G3344A	p.R1115H	.	.	.
EMR3	84658	broad.mit.edu	36	19	14622920	14622921	+	Missense_Mutation	DNP	TC	AT	AT	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032571	exon7	c.673_674AT	.	.	.	.
EMR3	84658	broad.mit.edu	36	19	14633866	14633866	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032571	exon4	c.C264T	p.V88V	.	.	.
OR7A17	26333	broad.mit.edu	36	19	14852525	14852525	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030901	exon1	c.C643A	p.L215I	.	.	.
CCDC105	126402	broad.mit.edu	36	19	14985536	14985536	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173482	exon2	c.G623A	p.S208N	.	.	.
CYP4F8	11283	broad.mit.edu	36	19	15594149	15594149	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007253	exon6	c.G645A	p.R215R	.	.	.
OR10H1	26539	broad.mit.edu	36	19	15779499	15779499	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013940	exon1	c.G349A	p.V117I	.	.	.
CYP4F2	8529	broad.mit.edu	36	19	15851700	15851700	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001082	exon10	c.C1123A	p.L375M	.	.	.
CYP4F11	57834	broad.mit.edu	36	19	15893917	15893917	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128932	exon9	c.G1045A	p.E349K	.	.	.
C19orf44	84167	broad.mit.edu	36	19	16475191	16475191	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032207	exon3	c.G1075A	p.E359K	.	.	.
NWD1	284434	broad.mit.edu	36	19	16721349	16721349	+	Missense_Mutation	SNP	G	A	A	rs61737596	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007525	exon6	c.G896A	p.R299H	.	.	.
NWD1	284434	broad.mit.edu	36	19	16744957	16744957	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007525	exon11	c.G2431T	p.E811X	.	.	.
MPV17L2	84769	broad.mit.edu	36	19	18167814	18167815	+	Missense_Mutation	DNP	AG	CC	CC	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032683	exon5	c.570_571CC	.	.	.	.
ZNF14	7561	broad.mit.edu	36	19	19683367	19683367	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021030	exon4	c.C1723T	p.R575X	.	.	.
ZNF14	7561	broad.mit.edu	36	19	19683451	19683451	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021030	exon4	c.C1639T	p.R547X	.	.	.
ZNF14	7561	broad.mit.edu	36	19	19685904	19685904	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021030	exon3	c.C187T	p.R63X	.	.	.
ZNF253	56242	broad.mit.edu	36	19	19863715	19863715	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021047	exon4	c.G659T	p.R220I	.	.	.
ZNF253	56242	broad.mit.edu	36	19	19864002	19864002	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021047	exon4	c.G946T	p.E316X	.	.	.
ZNF93	81931	broad.mit.edu	36	19	19905140	19905140	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031218	exon4	c.C376T	p.H126Y	.	.	.
ZNF626	199777	broad.mit.edu	36	19	20599255	20599255	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001076675	exon4	c.G1268T	p.R423I	.	.	.
ZNF85	7639	broad.mit.edu	36	19	20924670	20924670	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003429	exon4	c.C1510A	p.H504N	.	.	.
ZNF714	148206	broad.mit.edu	36	19	21092556	21092556	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182515	exon5	c.A1246C	p.I416L	.	.	.
ZNF431	170959	broad.mit.edu	36	19	21158009	21158009	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133473	exon5	c.C1063T	p.R355X	.	.	.
ZNF708	7562	broad.mit.edu	36	19	21268872	21268872	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021269	exon4	c.C736A	p.H246N	.	.	.
ZNF429	353088	broad.mit.edu	36	19	21511525	21511525	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001415	exon4	c.G830T	p.R277I	.	.	.
ZNF43	7594	broad.mit.edu	36	19	21782777	21782777	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003423	exon4	c.C1902T	p.F634F	.	.	.
ZNF43	7594	broad.mit.edu	36	19	21783591	21783591	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003423	exon4	c.T1088C	p.I363T	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21947449	21947449	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007153	exon4	c.C2227A	p.H743N	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21949423	21949423	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007153	exon4	c.C253A	p.L85I	.	.	.
ZNF257	113835	broad.mit.edu	36	19	22063042	22063042	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033468	exon4	c.C650A	p.T217N	.	.	.
ZNF257	113835	broad.mit.edu	36	19	22063567	22063567	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033468	exon4	c.G1175A	p.R392K	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22731685	22731685	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080409	exon6	c.C2486T	p.S829L	.	.	.
ZNF675	171392	broad.mit.edu	36	19	23628916	23628916	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138330	exon4	c.G659T	p.R220I	.	.	.
ZNF675	171392	broad.mit.edu	36	19	23629294	23629294	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138330	exon4	c.C281A	p.S94Y	.	.	.
ZNF681	148213	broad.mit.edu	36	19	23718643	23718643	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138286	exon4	c.C1549T	p.R517X	.	.	.
ZNF254	9534	broad.mit.edu	36	19	24101179	24101179	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203282	exon4	c.G537T	p.K179N	.	.	.
MIER2	54531	broad.mit.edu	36	19	276648	276648	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017550	exon7	c.G642A	p.R214R	.	.	.
UQCRFS1	7386	broad.mit.edu	36	19	34390663	34390663	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006003	exon2	c.G457A	p.E153K	.	.	.
ZNF536	9745	broad.mit.edu	36	19	35731117	35731117	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014717	exon4	c.C2751A	p.S917S	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36462488	36462488	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020856	exon2	c.C51T	p.S17S	.	.	.
DPY19L3	147991	broad.mit.edu	36	19	37619219	37619219	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172774	exon5	c.A356C	p.K119T	.	.	.
DPY19L3	147991	broad.mit.edu	36	19	37660399	37660399	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172774	exon17	c.C1829T	p.A610V	.	.	.
ANKRD27	84079	broad.mit.edu	36	19	37825894	37825894	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032139	exon9	c.G757T	p.D253Y	.	.	.
NUDT19	390916	broad.mit.edu	36	19	37894615	37894615	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105570	exon3	c.G1040A	p.R347H	.	.	.
C19orf40	91442	broad.mit.edu	36	19	38156240	38156240	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152266	exon3	c.C175A	p.L59I	.	.	.
ATCAY	85300	broad.mit.edu	36	19	3864756	3864756	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033064	exon9	c.C867T	p.S289S	.	.	.
SCGBL	284402	broad.mit.edu	36	19	39777071	39777071	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025591	exon2	c.C95T	p.A32V	.	.	.
ZNF302	55900	broad.mit.edu	36	19	39867476	39867476	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012320	exon5	c.C694T	p.R232C	.	.	.
CD22	933	broad.mit.edu	36	19	40515491	40515491	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001185100	exon3	c.G236A	p.S79N	.	.	.
CD22	933	broad.mit.edu	36	19	40524528	40524528	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001185100	exon9	c.G1855A	p.D619N	.	.	.
FFAR2	2867	broad.mit.edu	36	19	40632669	40632669	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005306	exon1	c.G213A	p.S71S	.	.	.
NPHS1	4868	broad.mit.edu	36	19	41025158	41025158	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004646	exon18	c.G2469A	p.A823A	.	.	.
APLP1	333	broad.mit.edu	36	19	41056387	41056387	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024807	exon8	c.C988T	p.R330C	.	.	.
ZNF146	7705	broad.mit.edu	36	19	41419399	41419399	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099639	exon3	c.G217A	p.E73K	.	.	.
ZFP14	57677	broad.mit.edu	36	19	41523415	41523415	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020917	exon5	c.C1153T	p.R385C	.	.	.
ZFP14	57677	broad.mit.edu	36	19	41523605	41523605	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020917	exon5	c.C963T	p.F321F	.	.	.
ZFP14	57677	broad.mit.edu	36	19	41523918	41523918	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020917	exon5	c.G650A	p.R217Q	.	.	.
ZFP82	284406	broad.mit.edu	36	19	41576232	41576232	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133466	exon5	c.T850G	p.C284G	.	.	.
ANKRD24	170961	broad.mit.edu	36	19	4170646	4170646	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133475	exon19	c.C3062T	p.A1021V	.	.	.
ZNF529	57711	broad.mit.edu	36	19	41729641	41729641	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145649	exon6	c.G1659A	p.P553P	.	.	.
ZNF382	84911	broad.mit.edu	36	19	41809922	41809922	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032825	exon5	c.G1283T	p.R428I	.	.	.
ZNF461	92283	broad.mit.edu	36	19	41821957	41821957	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153257	exon6	c.G1130T	p.R377I	.	.	.
ZNF567	163081	broad.mit.edu	36	19	41903376	41903376	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152603	exon4	c.G1817T	p.R606I	.	.	.
ZNF790	388536	broad.mit.edu	36	19	42001988	42001988	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206894	exon5	c.T1098C	p.H366H	.	.	.
ZNF345	25850	broad.mit.edu	36	19	42059817	42059817	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003419	exon3	c.G245A	p.R82Q	.	.	.
ZNF345	25850	broad.mit.edu	36	19	42060233	42060233	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003419	exon3	c.C661T	p.R221W	.	.	.
ZNF345	25850	broad.mit.edu	36	19	42061019	42061019	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003419	exon3	c.G1447A	p.E483K	.	.	.
ZNF829	374899	broad.mit.edu	36	19	42074334	42074334	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037232	exon6	c.G1199T	p.R400I	.	.	.
ZNF568	374900	broad.mit.edu	36	19	42133207	42133207	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198539	exon7	c.C1312T	p.R438X	.	.	.
ZNF585A	199704	broad.mit.edu	36	19	42335168	42335168	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199126	exon6	c.G1308T	p.E436D	.	.	.
ZNF585A	199704	broad.mit.edu	36	19	42335237	42335237	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199126	exon6	c.C1239T	p.C413C	.	.	.
ZNF585A	199704	broad.mit.edu	36	19	42335815	42335815	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199126	exon6	c.G661A	p.G221R	.	.	.
ZNF527	84503	broad.mit.edu	36	19	42571756	42571756	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032453	exon5	c.G965T	p.R322I	.	.	.
ZNF569	148266	broad.mit.edu	36	19	42595435	42595435	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152484	exon6	c.A1965C	p.K655N	.	.	.
ZNF569	148266	broad.mit.edu	36	19	42596578	42596578	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152484	exon6	c.A822G	p.E274E	.	.	.
ZNF540	163255	broad.mit.edu	36	19	42794441	42794441	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152606	exon5	c.T420C	p.S140S	.	.	.
ZNF781	163115	broad.mit.edu	36	19	42852573	42852573	+	Missense_Mutation	SNP	C	T	T	rs12460961	by-hapmap	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152605	exon4	c.G317A	p.R106Q	.	.	.
ZNF573	126231	broad.mit.edu	36	19	42922182	42922182	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172691	exon5	c.G1043T	p.R348I	.	.	.
RYR1	6261	broad.mit.edu	36	19	43675027	43675027	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042723	exon38	c.G6185A	p.R2062H	.	.	.
MAP4K1	11184	broad.mit.edu	36	19	43795137	43795137	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042600	exon9	c.G619A	p.E207K	.	.	.
CAPN12	147968	broad.mit.edu	36	19	43925539	43925539	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144691	exon2	c.G281A	p.R94H	.	.	.
HNRNPL	3191	broad.mit.edu	36	19	44028523	44028523	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005335	exon3	c.A35G	p.E12G	.	.	.
CLC	1178	broad.mit.edu	36	19	44916809	44916809	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001828	exon3	c.G257A	p.G86D	.	.	.
ZNF546	339327	broad.mit.edu	36	19	45212735	45212735	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178544	exon7	c.G1718A	p.R573Q	.	.	.
ZNF780B	163131	broad.mit.edu	36	19	45234215	45234215	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005851	exon5	c.C391T	p.R131X	.	.	.
SPTBN4	57731	broad.mit.edu	36	19	45763231	45763231	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020971	exon28	c.C5978T	p.A1993V	.	.	.
CEACAM21	90273	broad.mit.edu	36	19	46783654	46783654	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033543	exon5	c.C813A	p.D271E	.	.	.
PSG3	5671	broad.mit.edu	36	19	47925169	47925169	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021016	exon5	c.C1189T	p.R397C	.	.	.
PSG8	440533	broad.mit.edu	36	19	47959908	47959908	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182707	exon2	c.C430T	p.L144L	.	.	.
PSG1	5669	broad.mit.edu	36	19	48075540	48075540	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006905	exon1	c.C34T	p.R12C	.	.	.
PSG6	5675	broad.mit.edu	36	19	48220683	48220683	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002785	exon2	c.C430T	p.L144L	.	.	.
PSG5	5673	broad.mit.edu	36	19	48371216	48371216	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130014	exon4	c.G955A	p.E319K	.	.	.
PSG9	5678	broad.mit.edu	36	19	48464103	48464103	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002784	exon2	c.G103A	p.E35K	.	.	.
PLAUR	5329	broad.mit.edu	36	19	48852597	48852597	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005377	exon4	c.G346A	p.E116K	.	.	.
ZNF283	284349	broad.mit.edu	36	19	49043768	49043768	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181845	exon7	c.G1175A	p.R392Q	.	.	.
ZNF225	7768	broad.mit.edu	36	19	49328556	49328556	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013362	exon5	c.A1949C	p.K650T	.	.	.
ZFP112	7771	broad.mit.edu	36	19	49524989	49524989	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013380	exon4	c.G1161T	p.E387D	.	.	.
ZNF229	7772	broad.mit.edu	36	19	49625089	49625089	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014518	exon6	c.G1707T	p.E569D	.	.	.
ZNF180	7733	broad.mit.edu	36	19	49672664	49672664	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013256	exon5	c.G1874T	p.R625I	.	.	.
PVR	5817	broad.mit.edu	36	19	49842630	49842630	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135768	exon2	c.C375T	p.F125F	.	.	.
CLPTM1	1209	broad.mit.edu	36	19	50169580	50169580	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001294	exon4	c.C354A	p.F118L	.	.	.
NANOS2	339345	broad.mit.edu	36	19	51109488	51109488	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029861	exon1	c.G304A	p.G102R	.	.	.
HIF3A	64344	broad.mit.edu	36	19	51526359	51526359	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152795	exon13	c.C1819T	p.P607S	.	.	.
PPP5C	5536	broad.mit.edu	36	19	51580003	51580003	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006247	exon7	c.C901T	p.R301X	.	.	.
PTPRS	5802	broad.mit.edu	36	19	5159051	5159051	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002850	exon37	c.C5660T	p.T1887M	.	.	.
PNMAL1	55228	broad.mit.edu	36	19	51666010	51666010	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018215	exon2	c.G123A	p.E41E	.	.	.
PNMAL2	57469	broad.mit.edu	36	19	51689473	51689473	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020709	exon1	c.G1090A	p.D364N	.	.	.
GRLF1	2909	broad.mit.edu	36	19	52114350	52114350	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004491	exon1	c.A578C	p.K193T	.	.	.
PLA2G4C	8605	broad.mit.edu	36	19	53269936	53269936	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159323	exon12	c.C906T	p.G302G	.	.	.
LIG1	3978	broad.mit.edu	36	19	53310989	53310989	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000234	exon27	c.C2629T	p.R877X	.	.	.
SYNGR4	23546	broad.mit.edu	36	19	53571188	53571188	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012451	exon5	c.G506A	p.R169Q	.	.	.
GRWD1	83743	broad.mit.edu	36	19	53641758	53641758	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031485	exon3	c.T314G	p.M105R	.	.	.
PPP1R15A	23645	broad.mit.edu	36	19	54068999	54068999	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014330	exon2	c.G697A	p.E233K	.	.	.
SLC17A7	57030	broad.mit.edu	36	19	54626474	54626474	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020309	exon10	c.G1194A	p.S398S	.	.	.
ZNF473	25888	broad.mit.edu	36	19	55242018	55242018	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001006656	exon5	c.C2506A	p.H836N	.	.	.
KLK15	55554	broad.mit.edu	36	19	56021779	56021779	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017509	exon4	c.G528A	p.S176S	.	.	.
KLK15	55554	broad.mit.edu	36	19	56022111	56022111	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017509	exon3	c.G316A	p.D106N	.	.	.
KLK5	25818	broad.mit.edu	36	19	56144029	56144029	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077492	exon4	c.C490T	p.R164C	.	.	.
KLK6	5653	broad.mit.edu	36	19	56158484	56158484	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012964	exon4	c.C331T	p.R111C	.	.	.
KLK13	26085	broad.mit.edu	36	19	56255570	56255570	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015596	exon2	c.G171A	p.G57G	.	.	.
SIGLEC10	89790	broad.mit.edu	36	19	56611908	56611908	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171157	exon3	c.C530A	p.S177Y	.	.	.
ZNF577	84765	broad.mit.edu	36	19	57067635	57067635	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032679	exon7	c.A1420C	p.N474H	.	.	.
ZNF649	65251	broad.mit.edu	36	19	57086246	57086246	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023074	exon5	c.A955G	p.T319A	.	.	.
ZNF615	284370	broad.mit.edu	36	19	57188126	57188126	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198480	exon6	c.G2015A	p.R672K	.	.	.
ZNF615	284370	broad.mit.edu	36	19	57189218	57189218	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198480	exon6	c.G923A	p.R308Q	.	.	.
ZNF432	9668	broad.mit.edu	36	19	57229167	57229167	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014650	exon5	c.G1577A	p.S526N	.	.	.
ZNF432	9668	broad.mit.edu	36	19	57229986	57229986	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014650	exon5	c.G758T	p.R253I	.	.	.
ZNF432	9668	broad.mit.edu	36	19	57230154	57230154	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014650	exon5	c.G590T	p.R197I	.	.	.
ZNF616	90317	broad.mit.edu	36	19	57310171	57310171	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178523	exon4	c.G2058T	p.K686N	.	.	.
ZNF616	90317	broad.mit.edu	36	19	57310523	57310523	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178523	exon4	c.G1706A	p.R569K	.	.	.
ZNF836	162962	broad.mit.edu	36	19	57349950	57349950	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102657	exon5	c.C2798A	p.S933Y	.	.	.
ZNF836	162962	broad.mit.edu	36	19	57350523	57350523	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102657	exon5	c.G2225T	p.R742I	.	.	.
ZNF836	162962	broad.mit.edu	36	19	57352219	57352219	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102657	exon5	c.G529A	p.V177I	.	.	.
ZNF528	84436	broad.mit.edu	36	19	57601669	57601669	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032423	exon6	c.G232A	p.D78N	.	.	.
ZNF534	147658	broad.mit.edu	36	19	57633359	57633359	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143939	exon4	c.C873A	p.V291V	.	.	.
ZNF808	388558	broad.mit.edu	36	19	57749825	57749825	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039886	exon5	c.G1844T	p.R615I	.	.	.
ZNF701	55762	broad.mit.edu	36	19	57778129	57778129	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018260	exon4	c.C1005A	p.F335L	.	.	.
ZNF83	55769	broad.mit.edu	36	19	57808982	57808982	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105552	exon4	c.A648C	p.Q216H	.	.	.
ZNF28	7576	broad.mit.edu	36	19	57994848	57994848	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006969	exon4	c.G2062A	p.E688K	.	.	.
ZNF816	125893	broad.mit.edu	36	19	58146259	58146259	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031665	exon5	c.G581T	p.R194I	.	.	.
VN1R2	317701	broad.mit.edu	36	19	58454215	58454215	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173856	exon1	c.A775G	p.K259E	.	.	.
VN1R4	317703	broad.mit.edu	36	19	58462122	58462122	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173857	exon1	c.T609G	p.V203V	.	.	.
NLRP12	91662	broad.mit.edu	36	19	59005696	59005696	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144687	exon3	c.G1029A	p.R343R	.	.	.
NLRP12	91662	broad.mit.edu	36	19	59010035	59010035	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144687	exon2	c.G309A	p.P103P	.	.	.
PRKCG	5582	broad.mit.edu	36	19	59098204	59098204	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002739	exon15	c.G1641A	p.E547E	.	.	.
TMC4	147798	broad.mit.edu	36	19	59365205	59365205	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145303	exon3	c.G317T	p.R106I	.	.	.
LILRB3	11025	broad.mit.edu	36	19	59413027	59413027	+	Silent	SNP	C	T	T	rs1053011	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006864	exon12	c.G1722A	p.V574V	.	.	.
LILRB1	10859	broad.mit.edu	36	19	59836421	59836421	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081639	exon7	c.G1101A	p.W367X	.	.	.
KIR3DL1	3811	broad.mit.edu	36	19	60032711	60032711	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013289	exon7	c.C1084A	p.L362I	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60136826	60136826	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139176	exon8	c.G2481T	p.K827N	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60143132	60143132	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139176	exon4	c.G867A	p.R289R	.	.	.
BRSK1	84446	broad.mit.edu	36	19	60497218	60497218	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032430	exon5	c.G480A	p.E160E	.	.	.
ZNF524	147807	broad.mit.edu	36	19	60805323	60805323	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153219	exon2	c.G33A	p.S11S	.	.	.
NLRP9	338321	broad.mit.edu	36	19	60936147	60936147	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176820	exon2	c.C862T	p.R288W	.	.	.
NLRP11	204801	broad.mit.edu	36	19	61013424	61013424	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145007	exon5	c.C364T	p.R122C	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61080211	61080211	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_134444	exon8	c.G2563T	p.D855Y	.	.	.
NLRP8	126205	broad.mit.edu	36	19	61158046	61158046	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176811	exon3	c.C810T	p.L270L	.	.	.
ACSBG2	81616	broad.mit.edu	36	19	6117026	6117026	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030924	exon7	c.C738T	p.N246N	.	.	.
NLRP5	126206	broad.mit.edu	36	19	61207237	61207237	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153447	exon2	c.C406T	p.R136X	.	.	.
ACSBG2	81616	broad.mit.edu	36	19	6136582	6136582	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030924	exon11	c.C1458T	p.I486I	.	.	.
ZNF582	147948	broad.mit.edu	36	19	61587723	61587723	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144690	exon5	c.T875G	p.F292C	.	.	.
ZNF471	57573	broad.mit.edu	36	19	61728684	61728684	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020813	exon5	c.G1436T	p.R479I	.	.	.
ZFP28	140612	broad.mit.edu	36	19	61757491	61757491	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020828	exon8	c.G1525A	p.D509N	.	.	.
ZFP28	140612	broad.mit.edu	36	19	61757715	61757715	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020828	exon8	c.T1749C	p.H583H	.	.	.
ZFP28	140612	broad.mit.edu	36	19	61757971	61757971	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020828	exon8	c.G2005T	p.G669X	.	.	.
ZNF835	90485	broad.mit.edu	36	19	61867906	61867906	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005850	exon2	c.G539A	p.R180H	.	.	.
USP29	57663	broad.mit.edu	36	19	62332737	62332737	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020903	exon4	c.T882G	p.C294W	.	.	.
ZNF460	10794	broad.mit.edu	36	19	62494947	62494947	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006635	exon3	c.G1226A	p.R409Q	.	.	.
ZNF304	57343	broad.mit.edu	36	19	62560496	62560496	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020657	exon3	c.G1447A	p.A483T	.	.	.
ACER1	125981	broad.mit.edu	36	19	6260763	6260763	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133492	exon4	c.G433A	p.A145T	.	.	.
VN1R1	57191	broad.mit.edu	36	19	62659543	62659543	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020633	exon1	c.G124A	p.A42T	.	.	.
ZNF419	79744	broad.mit.edu	36	19	62697073	62697073	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098494	exon4	c.C1240T	p.R414X	.	.	.
ZNF530	348327	broad.mit.edu	36	19	62809381	62809381	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020880	exon3	c.T676G	p.F226V	.	.	.
ZNF134	7693	broad.mit.edu	36	19	62824123	62824123	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003435	exon3	c.T824G	p.L275R	.	.	.
ZNF211	10520	broad.mit.edu	36	19	62837818	62837818	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198855	exon2	c.A100G	p.T34A	.	.	.
ZNF154	7710	broad.mit.edu	36	19	62905506	62905506	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085384	exon3	c.G623A	p.R208Q	.	.	.
ZNF586	54807	broad.mit.edu	36	19	62982914	62982914	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017652	exon3	c.C1147T	p.R383C	.	.	.
ZNF135	7694	broad.mit.edu	36	19	63270568	63270568	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003436	exon5	c.G940A	p.E314K	.	.	.
ZNF274	10782	broad.mit.edu	36	19	63416028	63416028	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016325	exon7	c.C1572A	p.F524L	.	.	.
A1BG	1	broad.mit.edu	36	19	63556341	63556341	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130786	exon3	c.C105T	p.S35S	.	.	.
ZNF584	201514	broad.mit.edu	36	19	63620375	63620375	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173548	exon4	c.G678A	p.P226P	.	.	.
CHMP2A	27243	broad.mit.edu	36	19	63755566	63755566	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198426	exon3	c.C220T	p.R74C	.	.	.
CD70	970	broad.mit.edu	36	19	6537039	6537039	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001252	exon3	c.C574T	p.R192C	.	.	.
TNFSF14	8740	broad.mit.edu	36	19	6616058	6616058	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003807	exon5	c.G602A	p.S201N	.	.	.
C3	718	broad.mit.edu	36	19	6648759	6648759	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000064	exon20	c.C2487A	p.F829L	.	.	.
HNRNPM	4670	broad.mit.edu	36	19	8454043	8454043	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005968	exon13	c.A1122C	p.E374D	.	.	.
MBD3L1	85509	broad.mit.edu	36	19	8814931	8814931	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145208	exon1	c.A577C	p.K193Q	.	.	.
MUC16	94025	broad.mit.edu	36	19	8854521	8854521	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon66	c.C41568T	p.T13856T	.	.	.
MUC16	94025	broad.mit.edu	36	19	8861518	8861518	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon54	c.A40466G	p.N13489S	.	.	.
MUC16	94025	broad.mit.edu	36	19	8910298	8910298	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon5	c.C32333T	p.S10778L	.	.	.
MUC16	94025	broad.mit.edu	36	19	8922629	8922629	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.G25817A	p.R8606H	.	.	.
MUC16	94025	broad.mit.edu	36	19	8927570	8927570	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.C20876T	p.S6959F	.	.	.
MUC16	94025	broad.mit.edu	36	19	8928148	8928148	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.G20298A	p.S6766S	.	.	.
MUC16	94025	broad.mit.edu	36	19	8928385	8928385	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.G20061T	p.E6687D	.	.	.
MUC16	94025	broad.mit.edu	36	19	8931618	8931618	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.C16828T	p.R5610W	.	.	.
MUC16	94025	broad.mit.edu	36	19	8935162	8935162	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.G13284T	p.K4428N	.	.	.
MUC16	94025	broad.mit.edu	36	19	8945542	8945542	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon1	c.G7273A	p.A2425T	.	.	.
MUC16	94025	broad.mit.edu	36	19	8947115	8947115	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon1	c.G5700A	p.E1900E	.	.	.
MUC16	94025	broad.mit.edu	36	19	8951741	8951741	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon1	c.G1074T	p.K358N	.	.	.
OR7E24	26648	broad.mit.edu	36	19	9223191	9223191	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079935	exon1	c.C472A	p.L158I	.	.	.
ZNF560	147741	broad.mit.edu	36	19	9441346	9441346	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152476	exon8	c.G489T	p.E163D	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100217105	100217105	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152564	exon11	c.G1531A	p.A511T	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100900927	100900927	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152564	exon48	c.C8733A	p.F2911L	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100902843	100902843	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152564	exon50	c.T9140C	p.V3047A	.	.	.
RGS22	26166	broad.mit.edu	36	8	101083713	101083713	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015668	exon18	c.G2683T	p.D895Y	.	.	.
RGS22	26166	broad.mit.edu	36	8	101085447	101085447	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015668	exon17	c.G2510A	p.R837Q	.	.	.
FBXO43	286151	broad.mit.edu	36	8	101222597	101222597	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029860	exon2	c.C1061A	p.S354Y	.	.	.
FBXO43	286151	broad.mit.edu	36	8	101223384	101223384	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029860	exon2	c.G274T	p.E92X	.	.	.
ANKRD46	157567	broad.mit.edu	36	8	101611037	101611037	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198401	exon4	c.C201T	p.F67F	.	.	.
NCALD	83988	broad.mit.edu	36	8	102770740	102770740	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040624	exon8	c.C555T	p.C185C	.	.	.
KLF10	7071	broad.mit.edu	36	8	103732660	103732660	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001032282	exon3	c.C1043T	p.P348L	.	.	.
BAALC	79870	broad.mit.edu	36	8	104294362	104294362	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024812	exon2	c.G200A	p.R67Q	.	.	.
BAALC	79870	broad.mit.edu	36	8	104309488	104309488	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024812	exon3	c.G423T	p.K141N	.	.	.
FZD6	8323	broad.mit.edu	36	8	104411408	104411408	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164615	exon6	c.G1891A	p.E631K	.	.	.
CTHRC1	115908	broad.mit.edu	36	8	104457362	104457362	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138455	exon2	c.C371T	p.A124V	.	.	.
CTHRC1	115908	broad.mit.edu	36	8	104463990	104463990	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138455	exon4	c.G718T	p.E240X	.	.	.
RIMS2	9699	broad.mit.edu	36	8	105056772	105056772	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100117	exon16	c.G2789A	p.R930Q	.	.	.
DPYS	1807	broad.mit.edu	36	8	105474376	105474376	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001385	exon8	c.C1255A	p.H419N	.	.	.
DPYS	1807	broad.mit.edu	36	8	105528759	105528759	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001385	exon3	c.T572C	p.V191A	.	.	.
LRP12	29967	broad.mit.edu	36	8	105572112	105572112	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013437	exon7	c.G2545A	p.E849K	.	.	.
C8orf74	203076	broad.mit.edu	36	8	10592854	10592854	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040032	exon3	c.C577T	p.R193W	.	.	.
SOX7	83595	broad.mit.edu	36	8	10620829	10620829	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031439	exon2	c.C996T	p.F332F	.	.	.
ZFPM2	23414	broad.mit.edu	36	8	106884137	106884137	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012082	exon8	c.G2651A	p.R884H	.	.	.
OXR1	55074	broad.mit.edu	36	8	107788290	107788290	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181354	exon7	c.G1344T	p.E448D	.	.	.
OXR1	55074	broad.mit.edu	36	8	107792108	107792108	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181354	exon8	c.G1686A	p.T562T	.	.	.
XKR6	286046	broad.mit.edu	36	8	10793631	10793631	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173683	exon3	c.C1167T	p.F389F	.	.	.
TMEM74	157753	broad.mit.edu	36	8	109865719	109865719	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153015	exon2	c.G785A	p.R262Q	.	.	.
TRHR	7201	broad.mit.edu	36	8	110169323	110169323	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003301	exon1	c.C406A	p.L136I	.	.	.
TRHR	7201	broad.mit.edu	36	8	110169450	110169450	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003301	exon1	c.C533T	p.S178F	.	.	.
NUDCD1	84955	broad.mit.edu	36	8	110377941	110377941	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032869	exon3	c.C307T	p.R103X	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110522129	110522129	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177531	exon33	c.C3971A	p.S1324Y	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110526842	110526842	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177531	exon38	c.C5568A	p.F1856L	.	.	.
EBAG9	9166	broad.mit.edu	36	8	110636265	110636265	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198120	exon4	c.G294T	p.M98I	.	.	.
EBAG9	9166	broad.mit.edu	36	8	110645881	110645881	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198120	exon7	c.G559A	p.E187K	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113737561	113737561	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198123	exon18	c.A3002C	p.E1001A	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116496314	116496314	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014112	exon7	c.C2998A	p.H1000N	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116668481	116668481	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014112	exon5	c.G2622T	p.E874D	.	.	.
RAD21	5885	broad.mit.edu	36	8	117933387	117933387	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006265	exon11	c.A1451G	p.D484G	.	.	.
EXT1	2131	broad.mit.edu	36	8	118888677	118888677	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000127	exon9	c.G1843A	p.D615N	.	.	.
SAMD12	401474	broad.mit.edu	36	8	119662259	119662259	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001101676	exon2	c.G68T	p.G23V	.	.	.
TNFRSF11B	4982	broad.mit.edu	36	8	120014529	120014529	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002546	exon2	c.G222A	p.W74X	.	.	.
MTBP	27085	broad.mit.edu	36	8	121597549	121597549	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022045	exon18	c.G2183A	p.R728Q	.	.	.
SNTB1	6641	broad.mit.edu	36	8	121620305	121620305	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021021	exon7	c.T1610C	p.V537A	.	.	.
HAS2	3037	broad.mit.edu	36	8	122695931	122695931	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005328	exon4	c.A1258C	p.K420Q	.	.	.
WDR67	93594	broad.mit.edu	36	8	124165635	124165635	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145647	exon4	c.G393A	p.S131S	.	.	.
ATAD2	29028	broad.mit.edu	36	8	124409671	124409671	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014109	exon25	c.T3808C	p.C1270R	.	.	.
ATAD2	29028	broad.mit.edu	36	8	124452659	124452659	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014109	exon5	c.G637T	p.E213X	.	.	.
KLHL38	340359	broad.mit.edu	36	8	124733190	124733190	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081675	exon1	c.C1158A	p.F386L	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125047648	125047648	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039112	exon5	c.G321A	p.E107E	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125163806	125163806	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039112	exon33	c.G4317T	p.E1439D	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125200344	125200344	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039112	exon40	c.C5368T	p.P1790S	.	.	.
TRMT12	55039	broad.mit.edu	36	8	125533233	125533233	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017956	exon1	c.G884T	p.R295I	.	.	.
GSDMC	56169	broad.mit.edu	36	8	130858945	130858945	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031415	exon2	c.T71C	p.V24A	.	.	.
FAM49B	51571	broad.mit.edu	36	8	130943676	130943676	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016623	exon8	c.C282T	p.Y94Y	.	.	.
ASAP1	50807	broad.mit.edu	36	8	131483334	131483334	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018482	exon1	c.C38T	p.S13L	.	.	.
ADCY8	114	broad.mit.edu	36	8	131862074	131862074	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001115	exon18	c.C3500T	p.T1167M	.	.	.
ADCY8	114	broad.mit.edu	36	8	131985276	131985276	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001115	exon7	c.G1835T	p.R612I	.	.	.
ADCY8	114	broad.mit.edu	36	8	131991156	131991156	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001115	exon6	c.C1620T	p.L540L	.	.	.
EFR3A	23167	broad.mit.edu	36	8	133026244	133026244	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015137	exon3	c.G158A	p.R53Q	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133251783	133251783	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004519	exon8	c.C1215T	p.V405V	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133254071	133254071	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004519	exon7	c.A1096C	p.K366Q	.	.	.
PHF20L1	51105	broad.mit.edu	36	8	133896066	133896066	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032205	exon10	c.G933A	p.A311A	.	.	.
TG	7038	broad.mit.edu	36	8	133968099	133968099	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003235	exon9	c.T1300G	p.S434A	.	.	.
TG	7038	broad.mit.edu	36	8	133968226	133968226	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003235	exon9	c.T1427G	p.F476C	.	.	.
DLC1	10395	broad.mit.edu	36	8	13401414	13401414	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182643	exon2	c.G538A	p.E180K	.	.	.
TG	7038	broad.mit.edu	36	8	134177739	134177739	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003235	exon43	c.C7512T	p.V2504V	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139670720	139670720	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152888	exon65	c.C4839T	p.F1613F	.	.	.
TOP1MT	116447	broad.mit.edu	36	8	144478926	144478926	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052963	exon5	c.G636C	p.R212S	.	.	.
ZNF623	9831	broad.mit.edu	36	8	144803744	144803744	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014789	exon1	c.G559T	p.D187Y	.	.	.
ZNF623	9831	broad.mit.edu	36	8	144804479	144804479	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014789	exon1	c.G1294A	p.E432K	.	.	.
PARP10	84875	broad.mit.edu	36	8	145131475	145131475	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032789	exon5	c.G683A	p.R228Q	.	.	.
ZNF7	7553	broad.mit.edu	36	8	146038273	146038273	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003416	exon5	c.G977T	p.R326I	.	.	.
ZNF16	7564	broad.mit.edu	36	8	146128059	146128059	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006958	exon3	c.G918A	p.S306S	.	.	.
ZNF16	7564	broad.mit.edu	36	8	146128495	146128495	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006958	exon3	c.G482A	p.R161H	.	.	.
EFHA2	286097	broad.mit.edu	36	8	16979723	16979723	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181723	exon4	c.C628T	p.R210X	.	.	.
CNOT7	29883	broad.mit.edu	36	8	17146951	17146951	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013354	exon2	c.C82T	p.R28C	.	.	.
MTMR7	9108	broad.mit.edu	36	8	17233121	17233121	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004686	exon7	c.G774T	p.E258D	.	.	.
SLC7A2	6542	broad.mit.edu	36	8	17453873	17453873	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008539	exon6	c.G1055A	p.S352N	.	.	.
SH2D4A	63898	broad.mit.edu	36	8	19263040	19263040	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174160	exon5	c.T506C	p.I169T	.	.	.
LPL	4023	broad.mit.edu	36	8	19853617	19853617	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000237	exon3	c.G307T	p.E103X	.	.	.
SLC18A1	6570	broad.mit.edu	36	8	20051499	20051499	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003053	exon12	c.G1114A	p.G372R	.	.	.
MYOM2	9172	broad.mit.edu	36	8	2064570	2064570	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003970	exon32	c.G3743A	p.R1248Q	.	.	.
PIWIL2	55124	broad.mit.edu	36	8	22217571	22217571	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018068	exon11	c.G1274A	p.R425H	.	.	.
ADAM28	10863	broad.mit.edu	36	8	24233703	24233703	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021777	exon7	c.G586T	p.D196Y	.	.	.
ADAM28	10863	broad.mit.edu	36	8	24237377	24237377	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021777	exon9	c.C806T	p.A269V	.	.	.
ADAM7	8756	broad.mit.edu	36	8	24355969	24355969	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003817	exon2	c.C91T	p.R31C	.	.	.
DOCK5	80005	broad.mit.edu	36	8	25210004	25210004	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024940	exon7	c.G529A	p.E177K	.	.	.
DOCK5	80005	broad.mit.edu	36	8	25255932	25255932	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024940	exon25	c.G2609A	p.R870Q	.	.	.
ADRA1A	148	broad.mit.edu	36	8	26778146	26778146	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033302	exon1	c.C258T	p.F86F	.	.	.
CCDC25	55246	broad.mit.edu	36	8	27670166	27670166	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018246	exon4	c.C157T	p.R53X	.	.	.
ESCO2	157570	broad.mit.edu	36	8	27690577	27690577	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017420	exon3	c.G833A	p.S278N	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2823688	2823688	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033225	exon55	c.C8420T	p.S2807L	.	.	.
FZD3	7976	broad.mit.edu	36	8	28465140	28465140	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145866	exon5	c.G1506T	p.K502N	.	.	.
EXTL3	2137	broad.mit.edu	36	8	28630163	28630163	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001440	exon3	c.G668A	p.R223Q	.	.	.
INTS9	55756	broad.mit.edu	36	8	28710048	28710048	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145159	exon8	c.T725G	p.L242R	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2874251	2874251	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033225	exon51	c.C7853T	p.S2618L	.	.	.
HMBOX1	79618	broad.mit.edu	36	8	28932301	28932301	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024567	exon7	c.G803A	p.R268Q	.	.	.
KIF13B	23303	broad.mit.edu	36	8	29030295	29030295	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015254	exon31	c.G3809T	p.R1270I	.	.	.
KIF13B	23303	broad.mit.edu	36	8	29032370	29032370	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015254	exon30	c.G3594A	p.A1198A	.	.	.
KIF13B	23303	broad.mit.edu	36	8	29091003	29091003	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015254	exon9	c.G732T	p.E244D	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3068675	3068675	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033225	exon28	c.C4468T	p.R1490C	.	.	.
TEX15	56154	broad.mit.edu	36	8	30814071	30814071	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031271	exon3	c.C8122T	p.L2708F	.	.	.
TEX15	56154	broad.mit.edu	36	8	30819244	30819244	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031271	exon1	c.A6832G	p.I2278V	.	.	.
TEX15	56154	broad.mit.edu	36	8	30821127	30821127	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031271	exon1	c.C4949A	p.A1650D	.	.	.
TEX15	56154	broad.mit.edu	36	8	30821772	30821772	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031271	exon1	c.C4304A	p.S1435Y	.	.	.
TEX15	56154	broad.mit.edu	36	8	30822343	30822343	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031271	exon1	c.A3733C	p.N1245H	.	.	.
TEX15	56154	broad.mit.edu	36	8	30823391	30823391	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031271	exon1	c.C2685A	p.F895L	.	.	.
TEX15	56154	broad.mit.edu	36	8	30825537	30825537	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031271	exon1	c.G539T	p.R180I	.	.	.
WRN	7486	broad.mit.edu	36	8	31062251	31062251	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000553	exon11	c.G1378A	p.D460N	.	.	.
WRN	7486	broad.mit.edu	36	8	31109520	31109520	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000553	exon24	c.G2923A	p.E975K	.	.	.
FUT10	84750	broad.mit.edu	36	8	33366442	33366442	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032664	exon4	c.G793A	p.D265N	.	.	.
RNF122	79845	broad.mit.edu	36	8	33525833	33525833	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024787	exon6	c.C448A	p.L150I	.	.	.
RNF122	79845	broad.mit.edu	36	8	33525902	33525902	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024787	exon6	c.C379T	p.R127C	.	.	.
UNC5D	137970	broad.mit.edu	36	8	35703274	35703274	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080872	exon10	c.G1366A	p.G456R	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36841173	36841173	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031836	exon19	c.C1985T	p.S662L	.	.	.
ASH2L	9070	broad.mit.edu	36	8	38097664	38097664	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105214	exon10	c.G723A	p.P241P	.	.	.
LSM1	27257	broad.mit.edu	36	8	38146532	38146532	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014462	exon3	c.T176G	p.I59S	.	.	.
TM2D2	83877	broad.mit.edu	36	8	38968153	38968153	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024380	exon4	c.G371A	p.R124Q	.	.	.
ADAM9	8754	broad.mit.edu	36	8	39066746	39066746	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003816	exon19	c.G2092A	p.G698R	.	.	.
ADAM32	203102	broad.mit.edu	36	8	39210616	39210616	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145004	exon16	c.G1676A	p.R559Q	.	.	.
ADAM2	2515	broad.mit.edu	36	8	39743680	39743680	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001464	exon14	c.G1351T	p.E451X	.	.	.
ANK1	286	broad.mit.edu	36	8	41699895	41699895	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020475	exon9	c.G814A	p.E272K	.	.	.
MYST3	7994	broad.mit.edu	36	8	41910408	41910408	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099413	exon18	c.C4487T	p.S1496L	.	.	.
MYST3	7994	broad.mit.edu	36	8	41917641	41917641	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099413	exon16	c.G2915A	p.R972H	.	.	.
MYST3	7994	broad.mit.edu	36	8	41923272	41923272	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099413	exon13	c.G1990A	p.D664N	.	.	.
PLAT	5327	broad.mit.edu	36	8	42156739	42156739	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033011	exon11	c.C1087T	p.L363L	.	.	.
PLAT	5327	broad.mit.edu	36	8	42165713	42165713	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000930	exon4	c.A149G	p.Y50C	.	.	.
DKK4	27121	broad.mit.edu	36	8	42350842	42350842	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014420	exon4	c.G608A	p.R203Q	.	.	.
CHRNA6	8973	broad.mit.edu	36	8	42730231	42730231	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004198	exon5	c.C1268T	p.S423L	.	.	.
HGSNAT	138050	broad.mit.edu	36	8	43156548	43156548	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152419	exon11	c.A1116G	p.E372E	.	.	.
POTEA	340441	broad.mit.edu	36	8	43331182	43331182	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005365	exon12	c.T1484G	p.V495G	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48956627	48956627	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081640	exon38	c.C4969A	p.H1657N	.	.	.
PRKDC	5591	broad.mit.edu	36	8	49004992	49004992	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081640	exon18	c.A2026C	p.N676H	.	.	.
EFCAB1	79645	broad.mit.edu	36	8	49804861	49804861	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024593	exon4	c.G442T	p.D148Y	.	.	.
SNAI2	6591	broad.mit.edu	36	8	49995544	49995544	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003068	exon2	c.C89T	p.S30F	.	.	.
SNTG1	54212	broad.mit.edu	36	8	51628281	51628281	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018967	exon12	c.A799G	p.T267A	.	.	.
PCMTD1	115294	broad.mit.edu	36	8	52895783	52895783	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052937	exon6	c.G755A	p.R252Q	.	.	.
ST18	9705	broad.mit.edu	36	8	53242000	53242000	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014682	exon11	c.C1169T	p.S390L	.	.	.
ST18	9705	broad.mit.edu	36	8	53242085	53242085	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014682	exon11	c.G1084A	p.E362K	.	.	.
ST18	9705	broad.mit.edu	36	8	53247374	53247374	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014682	exon10	c.A600C	p.E200D	.	.	.
XKR4	114786	broad.mit.edu	36	8	56598713	56598713	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052898	exon3	c.C1326A	p.I442I	.	.	.
TGS1	96764	broad.mit.edu	36	8	56899793	56899793	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024831	exon13	c.C2539T	p.R847X	.	.	.
LYN	4067	broad.mit.edu	36	8	57029080	57029080	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002350	exon8	c.T773G	p.F258C	.	.	.
RPS20	6224	broad.mit.edu	36	8	57148328	57148328	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146227	exon4	c.C235T	p.R79C	.	.	.
FAM110B	90362	broad.mit.edu	36	8	59222066	59222066	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147189	exon5	c.C723T	p.A241A	.	.	.
CYP7A1	1581	broad.mit.edu	36	8	59572246	59572246	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000780	exon3	c.G379A	p.D127N	.	.	.
NSMAF	8439	broad.mit.edu	36	8	59710453	59710453	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003580	exon4	c.G261A	p.K87K	.	.	.
MCPH1	79648	broad.mit.edu	36	8	6487927	6487927	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024596	exon14	c.C2457A	p.S819S	.	.	.
CYP7B1	9420	broad.mit.edu	36	8	65691292	65691292	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004820	exon3	c.G360T	p.E120D	.	.	.
MTFR1	9650	broad.mit.edu	36	8	66782727	66782727	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145838	exon5	c.G761A	p.R254Q	.	.	.
PDE7A	5150	broad.mit.edu	36	8	66794161	66794161	+	Missense_Mutation	SNP	C	A	A	rs28515659	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002603	exon13	c.G1289T	p.R430I	.	.	.
DNAJC5B	85479	broad.mit.edu	36	8	67126400	67126400	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033105	exon3	c.G64A	p.E22K	.	.	.
TRIM55	84675	broad.mit.edu	36	8	67209810	67209810	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_184085	exon3	c.G373A	p.E125K	.	.	.
ADHFE1	137872	broad.mit.edu	36	8	67531632	67531632	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144650	exon11	c.G1013T	p.G338V	.	.	.
MYBL1	4603	broad.mit.edu	36	8	67672129	67672129	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080416	exon5	c.C502T	p.L168F	.	.	.
VCPIP1	80124	broad.mit.edu	36	8	67739395	67739395	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025054	exon1	c.C2353T	p.R785X	.	.	.
CSPP1	79848	broad.mit.edu	36	8	68270366	68270366	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024790	exon29	c.C3650T	p.S1217L	.	.	.
ARFGEF1	10565	broad.mit.edu	36	8	68273782	68273782	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006421	exon39	c.G5491A	p.G1831R	.	.	.
ARFGEF1	10565	broad.mit.edu	36	8	68302085	68302085	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006421	exon27	c.C3757T	p.R1253X	.	.	.
PREX2	80243	broad.mit.edu	36	8	69135469	69135469	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025170	exon11	c.G1240A	p.E414K	.	.	.
PREX2	80243	broad.mit.edu	36	8	69147285	69147285	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025170	exon14	c.G1495T	p.D499Y	.	.	.
PREX2	80243	broad.mit.edu	36	8	69194245	69194245	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024870	exon28	c.G3446A	p.R1149H	.	.	.
C8orf34	116328	broad.mit.edu	36	8	69562828	69562828	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052958	exon5	c.T753C	p.D251D	.	.	.
SULF1	23213	broad.mit.edu	36	8	70676486	70676486	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128205	exon10	c.A929G	p.Y310C	.	.	.
SULF1	23213	broad.mit.edu	36	8	70676590	70676590	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128205	exon10	c.C1033T	p.R345C	.	.	.
SLCO5A1	81796	broad.mit.edu	36	8	70906659	70906659	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030958	exon2	c.T804G	p.I268M	.	.	.
SLCO5A1	81796	broad.mit.edu	36	8	70907129	70907129	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030958	exon2	c.G334A	p.A112T	.	.	.
TRAM1	23471	broad.mit.edu	36	8	71682949	71682949	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014294	exon1	c.C40T	p.L14L	.	.	.
XKR9	389668	broad.mit.edu	36	8	71809054	71809054	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011720	exon5	c.C963A	p.I321I	.	.	.
KCNB2	9312	broad.mit.edu	36	8	73642876	73642876	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004770	exon2	c.C353T	p.S118L	.	.	.
C8orf84	157869	broad.mit.edu	36	8	74146614	74146614	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153225	exon3	c.G455A	p.R152Q	.	.	.
LY96	23643	broad.mit.edu	36	8	75101619	75101619	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015364	exon4	c.A373C	p.K125Q	.	.	.
PI15	51050	broad.mit.edu	36	8	75900227	75900227	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015886	exon2	c.C188T	p.S63L	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77923907	77923907	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024721	exon7	c.C3633A	p.F1211L	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77926736	77926736	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024721	exon10	c.C5024T	p.T1675I	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77929390	77929390	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024721	exon10	c.C7678T	p.P2560S	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77930908	77930908	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024721	exon10	c.C9196T	p.R3066C	.	.	.
SLC10A5	347051	broad.mit.edu	36	8	82769606	82769606	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010893	exon1	c.A157G	p.K53E	.	.	.
RALYL	138046	broad.mit.edu	36	8	85604353	85604353	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100392	exon3	c.C242T	p.A81V	.	.	.
RALYL	138046	broad.mit.edu	36	8	85962542	85962542	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100392	exon9	c.C834T	p.F278F	.	.	.
LRRCC1	85444	broad.mit.edu	36	8	86222919	86222919	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033402	exon7	c.A950G	p.N317S	.	.	.
ATP6V0D2	245972	broad.mit.edu	36	8	87220869	87220869	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152565	exon3	c.G370T	p.E124X	.	.	.
WWP1	11059	broad.mit.edu	36	8	87462908	87462908	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007013	exon5	c.G268A	p.A90T	.	.	.
CPNE3	8895	broad.mit.edu	36	8	87639736	87639736	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003909	exon17	c.G1596A	p.T532T	.	.	.
CNGB3	54714	broad.mit.edu	36	8	87714152	87714152	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019098	exon11	c.T1264G	p.F422V	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88955023	88955023	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152418	exon1	c.A293G	p.K98R	.	.	.
OSGIN2	734	broad.mit.edu	36	8	90995531	90995531	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004337	exon3	c.G120A	p.P40P	.	.	.
OSGIN2	734	broad.mit.edu	36	8	91006078	91006078	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004337	exon6	c.A661C	p.K221Q	.	.	.
SLC26A7	115111	broad.mit.edu	36	8	92415701	92415701	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_134266	exon6	c.T645G	p.I215M	.	.	.
RUNX1T1	862	broad.mit.edu	36	8	93096005	93096005	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198626	exon5	c.G446A	p.R149H	.	.	.
TMEM67	91147	broad.mit.edu	36	8	94890545	94890545	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153704	exon25	c.C2641A	p.L881I	.	.	.
PDP1	54704	broad.mit.edu	36	8	95003847	95003847	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161779	exon3	c.T459A	p.S153R	.	.	.
CDH17	1015	broad.mit.edu	36	8	95233389	95233389	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144663	exon13	c.T1679C	p.V560A	.	.	.
RAD54B	25788	broad.mit.edu	36	8	95480952	95480952	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012415	exon8	c.G1244A	p.R415H	.	.	.
KIAA1429	25962	broad.mit.edu	36	8	95608128	95608128	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015496	exon8	c.T1520C	p.L507S	.	.	.
PGCP	10404	broad.mit.edu	36	8	98224448	98224448	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016134	exon8	c.A1280G	p.Y427C	.	.	.
MATN2	4147	broad.mit.edu	36	8	99102644	99102644	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030583	exon13	c.G1855A	p.E619K	.	.	.
MATN2	4147	broad.mit.edu	36	8	99108858	99108858	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030583	exon14	c.G1981A	p.D661N	.	.	.
USP9Y	8287	broad.mit.edu	36	Y	13462365	13462365	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004654	exon37	c.A6124G	p.T2042A	.	.	.
UTY	7404	broad.mit.edu	36	Y	14091488	14091488	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007125	exon3	c.G232A	p.E78K	.	.	.
ZFY	7544	broad.mit.edu	36	Y	2889685	2889685	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003411	exon3	c.C632T	p.S211L	.	.	.
AGL	178	broad.mit.edu	36	1	100108619	100108619	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000645	exon4	c.C689T	p.A230V	.	.	.
VCAM1	7412	broad.mit.edu	36	1	100976407	100976407	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199834	exon9	c.G2014A	p.A672T	.	.	.
SLC30A7	148867	broad.mit.edu	36	1	101199975	101199975	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133496	exon9	c.T846G	p.V282V	.	.	.
KIF1B	23095	broad.mit.edu	36	1	10286810	10286810	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183416	exon21	c.G2980A	p.D994N	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103264002	103264002	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080629	exon6	c.T875G	p.F292C	.	.	.
KIF1B	23095	broad.mit.edu	36	1	10345950	10345950	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015074	exon39	c.G4189A	p.E1397K	.	.	.
NTNG1	22854	broad.mit.edu	36	1	107668678	107668678	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113228	exon3	c.C498T	p.L166L	.	.	.
VAV3	10451	broad.mit.edu	36	1	107986884	107986884	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006113	exon20	c.G1794A	p.Q598Q	.	.	.
C1orf59	113802	broad.mit.edu	36	1	108993019	108993019	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144584	exon8	c.G874T	p.E292X	.	.	.
WDR47	22911	broad.mit.edu	36	1	109330809	109330809	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014969	exon10	c.A1787C	p.K596T	.	.	.
SORT1	6272	broad.mit.edu	36	1	109661054	109661054	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002959	exon17	c.C2191T	p.R731X	.	.	.
GNAT2	2780	broad.mit.edu	36	1	109947566	109947566	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005272	exon8	c.A998C	p.K333T	.	.	.
AHCYL1	10768	broad.mit.edu	36	1	110359640	110359640	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006621	exon7	c.G746A	p.R249Q	.	.	.
KCNA3	3738	broad.mit.edu	36	1	111017245	111017245	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002232	exon1	c.G1710T	p.K570N	.	.	.
KCNA3	3738	broad.mit.edu	36	1	111017544	111017544	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002232	exon1	c.A1411G	p.T471A	.	.	.
CHI3L2	1117	broad.mit.edu	36	1	111575402	111575402	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025199	exon3	c.C55A	p.L19I	.	.	.
OVGP1	5016	broad.mit.edu	36	1	111770770	111770770	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002557	exon3	c.C72T	p.L24L	.	.	.
DDX20	11218	broad.mit.edu	36	1	112106851	112106851	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007204	exon9	c.G1134T	p.V378V	.	.	.
DDX20	11218	broad.mit.edu	36	1	112109989	112109989	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007204	exon11	c.A1420C	p.K474Q	.	.	.
KCND3	3752	broad.mit.edu	36	1	112326436	112326436	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004980	exon2	c.C436T	p.R146W	.	.	.
CTTNBP2NL	55917	broad.mit.edu	36	1	112800522	112800522	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018704	exon6	c.C885T	p.T295T	.	.	.
MAGI3	260425	broad.mit.edu	36	1	113966958	113966958	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152900	exon9	c.A1179C	p.E393D	.	.	.
PHTF1	10745	broad.mit.edu	36	1	114048251	114048251	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006608	exon14	c.C1865T	p.S622L	.	.	.
AMPD1	270	broad.mit.edu	36	1	115020129	115020129	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000036	exon11	c.G1506T	p.K502N	.	.	.
NRAS	4893	broad.mit.edu	36	1	115053769	115053769	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002524	exon4	c.G394A	p.E132K	.	.	.
CSDE1	7812	broad.mit.edu	36	1	115076827	115076827	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130523	exon10	c.G1016A	p.R339Q	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115204951	115204951	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003176	exon8	c.A596C	p.K199T	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115255631	115255631	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003176	exon18	c.A1434G	p.V478V	.	.	.
NGF	4803	broad.mit.edu	36	1	115630812	115630812	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002506	exon3	c.C128T	p.S43F	.	.	.
IGSF3	3321	broad.mit.edu	36	1	116952290	116952290	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001542	exon5	c.T1019G	p.F340C	.	.	.
CD2	914	broad.mit.edu	36	1	117098855	117098855	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001767	exon2	c.T141G	p.S47R	.	.	.
PTGFRN	5738	broad.mit.edu	36	1	117285897	117285897	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020440	exon2	c.G87A	p.A29A	.	.	.
PTGFRN	5738	broad.mit.edu	36	1	117305669	117305669	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020440	exon5	c.A1495C	p.N499H	.	.	.
GDAP2	54834	broad.mit.edu	36	1	118264377	118264377	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017686	exon2	c.C127T	p.R43X	.	.	.
WDR3	10885	broad.mit.edu	36	1	118278818	118278818	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006784	exon3	c.C371T	p.S124F	.	.	.
WDR3	10885	broad.mit.edu	36	1	118285306	118285306	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006784	exon8	c.C826T	p.R276W	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118399899	118399899	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206996	exon19	c.T2702G	p.F901C	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118399973	118399973	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206996	exon19	c.A2628C	p.K876N	.	.	.
NPPB	4879	broad.mit.edu	36	1	11841358	11841358	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002521	exon1	c.G120A	p.T40T	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118425685	118425685	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206996	exon14	c.G1866A	p.G622G	.	.	.
HAO2	51179	broad.mit.edu	36	1	119729199	119729199	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016527	exon4	c.G561T	p.K187N	.	.	.
HAO2	51179	broad.mit.edu	36	1	119736325	119736325	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016527	exon6	c.C841T	p.R281X	.	.	.
NOTCH2	4853	broad.mit.edu	36	1	120313733	120313733	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024408	exon6	c.C1032T	p.F344F	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12259373	12259373	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018156	exon19	c.G3141A	p.P1047P	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12296891	12296891	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018156	exon30	c.G7068A	p.T2356T	.	.	.
AADACL4	343066	broad.mit.edu	36	1	12648905	12648905	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013630	exon4	c.G796A	p.A266T	.	.	.
HNRNPCL1	343069	broad.mit.edu	36	1	12830143	12830143	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013631	exon2	c.C587A	p.S196Y	.	.	.
HNRNPCL1	343069	broad.mit.edu	36	1	12830302	12830302	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013631	exon2	c.C428T	p.S143L	.	.	.
NOTCH2NL	388677	broad.mit.edu	36	1	143993371	143993371	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203458	exon5	c.G694T	p.E232X	.	.	.
PEX11B	8799	broad.mit.edu	36	1	144229547	144229547	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184795	exon3	c.G250A	p.A84T	.	.	.
BCL9	607	broad.mit.edu	36	1	145557987	145557987	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004326	exon8	c.G1402A	p.E468K	.	.	.
GJA8	2703	broad.mit.edu	36	1	145846932	145846932	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005267	exon2	c.C226T	p.R76C	.	.	.
SF3B4	10262	broad.mit.edu	36	1	148165020	148165020	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005850	exon3	c.G578A	p.R193Q	.	.	.
VPS45	11311	broad.mit.edu	36	1	148321503	148321503	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007259	exon10	c.C1016T	p.S339F	.	.	.
C1orf51	148523	broad.mit.edu	36	1	148522845	148522845	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144697	exon2	c.G373T	p.E125X	.	.	.
C1orf51	148523	broad.mit.edu	36	1	148525919	148525919	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144697	exon5	c.A1087G	p.T363A	.	.	.
RPRD2	23248	broad.mit.edu	36	1	148710176	148710176	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015203	exon11	c.C2128T	p.R710C	.	.	.
HORMAD1	84072	broad.mit.edu	36	1	148939244	148939244	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199829	exon13	c.C1051T	p.R351W	.	.	.
CTSS	1520	broad.mit.edu	36	1	148989134	148989134	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004079	exon6	c.T765C	p.R255R	.	.	.
SETDB1	9869	broad.mit.edu	36	1	149189805	149189805	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145415	exon13	c.C1828T	p.R610W	.	.	.
SEMA6C	10500	broad.mit.edu	36	1	149374360	149374360	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178061	exon15	c.G1483C	p.E495Q	.	.	.
PIP5K1A	8394	broad.mit.edu	36	1	149477347	149477347	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003557	exon9	c.A1172C	p.D391A	.	.	.
SNX27	81609	broad.mit.edu	36	1	149932085	149932085	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030918	exon10	c.C1464T	p.F488F	.	.	.
MRPL9	65005	broad.mit.edu	36	1	149999214	149999214	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031420	exon7	c.G740T	p.R247I	.	.	.
LINGO4	339398	broad.mit.edu	36	1	150041572	150041572	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004432	exon2	c.G233A	p.G78E	.	.	.
THEM4	117145	broad.mit.edu	36	1	150127381	150127381	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053055	exon4	c.T549G	p.N183K	.	.	.
S100A11	6282	broad.mit.edu	36	1	150271849	150271849	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005620	exon3	c.C231A	p.F77L	.	.	.
TCHHL1	126637	broad.mit.edu	36	1	150324069	150324069	+	Read-through	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008536	exon3	c.T2713G	p.X905G	.	.	.
HRNR	388697	broad.mit.edu	36	1	150454265	150454265	+	Missense_Mutation	SNP	G	A	A	rs56055912	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009931	exon3	c.C6464T	p.S2155L	.	.	.
FLG	2312	broad.mit.edu	36	1	150542007	150542007	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002016	exon3	c.C11979A	p.H3993Q	.	.	.
FLG	2312	broad.mit.edu	36	1	150546785	150546785	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002016	exon3	c.C7201T	p.R2401C	.	.	.
FLG	2312	broad.mit.edu	36	1	150548091	150548091	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002016	exon3	c.C5895T	p.A1965A	.	.	.
FLG	2312	broad.mit.edu	36	1	150548293	150548293	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002016	exon3	c.C5693T	p.S1898L	.	.	.
FLG2	388698	broad.mit.edu	36	1	150590779	150590779	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014342	exon3	c.G6107A	p.S2036N	.	.	.
FLG2	388698	broad.mit.edu	36	1	150591302	150591302	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014342	exon3	c.C5584A	p.H1862N	.	.	.
CRTC2	200186	broad.mit.edu	36	1	152190397	152190397	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181715	exon11	c.C1367T	p.S456L	.	.	.
NUP210L	91181	broad.mit.edu	36	1	152293404	152293404	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207308	exon25	c.T3407C	p.I1136T	.	.	.
NUP210L	91181	broad.mit.edu	36	1	152296007	152296007	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207308	exon23	c.C3148A	p.L1050I	.	.	.
TDRD10	126668	broad.mit.edu	36	1	152786521	152786521	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182499	exon12	c.C965T	p.S322L	.	.	.
ADAR	103	broad.mit.edu	36	1	152827732	152827732	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015841	exon10	c.C2669T	p.A890V	.	.	.
KCNN3	3782	broad.mit.edu	36	1	153108545	153108545	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002249	exon1	c.G520A	p.A174T	.	.	.
KAZ	23254	broad.mit.edu	36	1	15313593	15313593	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201628	exon15	c.G2203T	p.D735Y	.	.	.
SCAMP3	10067	broad.mit.edu	36	1	153496776	153496776	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052837	exon3	c.G279A	p.E93E	.	.	.
TMEM51	55092	broad.mit.edu	36	1	15414356	15414356	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136216	exon3	c.C186T	p.T62T	.	.	.
RXFP4	339403	broad.mit.edu	36	1	154179020	154179020	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181885	exon1	c.A896T	p.H299L	.	.	.
SMG5	23381	broad.mit.edu	36	1	154488863	154488863	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015327	exon19	c.C2719T	p.R907W	.	.	.
SMG5	23381	broad.mit.edu	36	1	154515401	154515401	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015327	exon2	c.A123T	p.K41N	.	.	.
C1orf66	51093	broad.mit.edu	36	1	154973050	154973050	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015997	exon8	c.T1309A	p.F437I	.	.	.
CD5L	922	broad.mit.edu	36	1	156069727	156069727	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005894	exon5	c.C918T	p.G306G	.	.	.
CTRC	11330	broad.mit.edu	36	1	15642528	15642528	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007272	exon5	c.A384G	p.A128A	.	.	.
OR10X1	128367	broad.mit.edu	36	1	156815803	156815803	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004477	exon1	c.A511G	p.I171V	.	.	.
OR10X1	128367	broad.mit.edu	36	1	156816235	156816235	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004477	exon1	c.G79A	p.E27K	.	.	.
OR10Z1	128368	broad.mit.edu	36	1	156843558	156843558	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004478	exon1	c.A706G	p.K236E	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156879310	156879310	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003126	exon32	c.A4523G	p.D1508G	.	.	.
OR6K2	81448	broad.mit.edu	36	1	156936178	156936178	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005279	exon1	c.G889T	p.E297X	.	.	.
OR6N2	81442	broad.mit.edu	36	1	157013405	157013405	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005278	exon1	c.G645T	p.M215I	.	.	.
CADM3	57863	broad.mit.edu	36	1	157430384	157430384	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021189	exon6	c.C723T	p.I241I	.	.	.
CADM3	57863	broad.mit.edu	36	1	157433423	157433423	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021189	exon8	c.G1003T	p.A335S	.	.	.
OR10J3	441911	broad.mit.edu	36	1	157550129	157550129	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004467	exon1	c.G945T	p.K315N	.	.	.
OR10J1	26476	broad.mit.edu	36	1	157676347	157676347	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012351	exon1	c.A175G	p.I59V	.	.	.
OR10J1	26476	broad.mit.edu	36	1	157676570	157676570	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012351	exon1	c.G398A	p.R133H	.	.	.
OR10J5	127385	broad.mit.edu	36	1	157771639	157771639	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004469	exon1	c.G783A	p.P261P	.	.	.
SLAMF8	56833	broad.mit.edu	36	1	158063318	158063318	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020125	exon1	c.C6A	p.V2V	.	.	.
IGSF8	93185	broad.mit.edu	36	1	158330298	158330298	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052868	exon3	c.C730T	p.R244C	.	.	.
ATP1A2	477	broad.mit.edu	36	1	158366889	158366889	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000702	exon13	c.G1705A	p.D569N	.	.	.
ATP1A2	477	broad.mit.edu	36	1	158371652	158371652	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000702	exon15	c.C2058A	p.V686V	.	.	.
ATP1A2	477	broad.mit.edu	36	1	158373036	158373036	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000702	exon19	c.G2616A	p.E872E	.	.	.
ATP1A4	480	broad.mit.edu	36	1	158391566	158391566	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144699	exon3	c.C315T	p.F105F	.	.	.
ATP1A4	480	broad.mit.edu	36	1	158410657	158410657	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144699	exon14	c.C2124T	p.V708V	.	.	.
NCSTN	23385	broad.mit.edu	36	1	158586574	158586574	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015331	exon5	c.G492A	p.W164X	.	.	.
RSC1A1	6248	broad.mit.edu	36	1	15860008	15860008	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006511	exon1	c.C1058T	p.T353M	.	.	.
VANGL2	57216	broad.mit.edu	36	1	158655580	158655580	+	Silent	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020335	exon4	c.T357A	p.S119S	.	.	.
SLAMF1	6504	broad.mit.edu	36	1	158873937	158873937	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003037	exon2	c.G83A	p.R28H	.	.	.
SLAMF7	57823	broad.mit.edu	36	1	158987794	158987794	+	Missense_Mutation	SNP	C	T	T	rs34099422	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021181	exon5	c.C805T	p.R269W	.	.	.
LY9	4063	broad.mit.edu	36	1	159051096	159051096	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002348	exon4	c.C993T	p.D331D	.	.	.
LY9	4063	broad.mit.edu	36	1	159054721	159054721	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002348	exon6	c.C1432T	p.R478X	.	.	.
CD244	51744	broad.mit.edu	36	1	159077909	159077909	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166663	exon3	c.C385A	p.L129M	.	.	.
NR1I3	9970	broad.mit.edu	36	1	159469699	159469699	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077482	exon4	c.C292T	p.R98W	.	.	.
FCRLA	84824	broad.mit.edu	36	1	159949634	159949634	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184870	exon4	c.C569A	p.S190Y	.	.	.
ATF6	22926	broad.mit.edu	36	1	160028556	160028556	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007348	exon6	c.A503C	p.K168T	.	.	.
ATF6	22926	broad.mit.edu	36	1	160038473	160038473	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007348	exon7	c.G696A	p.T232T	.	.	.
OLFML2B	25903	broad.mit.edu	36	1	160236698	160236698	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015441	exon5	c.G778A	p.E260K	.	.	.
OLFML2B	25903	broad.mit.edu	36	1	160259777	160259777	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015441	exon1	c.T68G	p.I23S	.	.	.
C1orf111	284680	broad.mit.edu	36	1	160611004	160611004	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182581	exon3	c.G244A	p.G82R	.	.	.
DDR2	4921	broad.mit.edu	36	1	161015127	161015127	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014796	exon18	c.G2417A	p.R806Q	.	.	.
SPEN	23013	broad.mit.edu	36	1	16115279	16115279	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015001	exon6	c.G1313T	p.R438I	.	.	.
SPEN	23013	broad.mit.edu	36	1	16127692	16127692	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015001	exon11	c.G2370T	p.K790N	.	.	.
SPEN	23013	broad.mit.edu	36	1	16129283	16129283	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015001	exon11	c.G3961A	p.A1321T	.	.	.
SPEN	23013	broad.mit.edu	36	1	16132341	16132341	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015001	exon11	c.G7019A	p.R2340H	.	.	.
NUF2	83540	broad.mit.edu	36	1	161576835	161576835	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031423	exon9	c.C664T	p.R222C	.	.	.
NUF2	83540	broad.mit.edu	36	1	161580238	161580238	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031423	exon10	c.A761G	p.Y254C	.	.	.
RXRG	6258	broad.mit.edu	36	1	163645543	163645543	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006917	exon7	c.G922T	p.E308X	.	.	.
CDK11B	984	broad.mit.edu	36	1	1644054	1644054	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033486	exon2	c.C64T	p.R22X	.	.	.
FBXO42	54455	broad.mit.edu	36	1	16454869	16454869	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018994	exon6	c.C691T	p.P231S	.	.	.
TADA1	117143	broad.mit.edu	36	1	165093518	165093518	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053053	exon8	c.G918A	p.T306T	.	.	.
MAEL	84944	broad.mit.edu	36	1	165257020	165257020	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032858	exon11	c.T1116C	p.I372I	.	.	.
DCAF6	55827	broad.mit.edu	36	1	166227174	166227174	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198957	exon5	c.C568T	p.R190W	.	.	.
NME7	29922	broad.mit.edu	36	1	167534512	167534512	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_197972	exon6	c.G446A	p.R149H	.	.	.
F5	2153	broad.mit.edu	36	1	167754362	167754362	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000130	exon23	c.C6257T	p.S2086L	.	.	.
SELP	6403	broad.mit.edu	36	1	167829532	167829532	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003005	exon14	c.C2342A	p.S781Y	.	.	.
SELP	6403	broad.mit.edu	36	1	167847358	167847358	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003005	exon7	c.T1143C	p.C381C	.	.	.
C1orf112	55732	broad.mit.edu	36	1	168039859	168039859	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018186	exon6	c.C332A	p.S111Y	.	.	.
SCYL3	57147	broad.mit.edu	36	1	168090299	168090299	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181093	exon13	c.C1905T	p.I635I	.	.	.
C1orf129	80133	broad.mit.edu	36	1	169183295	169183295	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025063	exon3	c.G29A	p.S10N	.	.	.
C1orf129	80133	broad.mit.edu	36	1	169233955	169233955	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025063	exon15	c.G1512T	p.E504D	.	.	.
FMO3	2328	broad.mit.edu	36	1	169343524	169343524	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002294	exon4	c.G406T	p.E136X	.	.	.
FMO3	2328	broad.mit.edu	36	1	169349814	169349814	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002294	exon7	c.A871C	p.S291R	.	.	.
FMO3	2328	broad.mit.edu	36	1	169353137	169353137	+	Missense_Mutation	SNP	C	A	A	rs28363595	by-frequency	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002294	exon9	c.C1530A	p.F510L	.	.	.
FMO2	2327	broad.mit.edu	36	1	169444617	169444617	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001460	exon9	c.C1317T	p.L439L	.	.	.
FMO1	2326	broad.mit.edu	36	1	169516727	169516727	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002021	exon6	c.A806G	p.Y269C	.	.	.
BAT2L2	23215	broad.mit.edu	36	1	169777449	169777449	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015172	exon16	c.G4214A	p.R1405Q	.	.	.
VAMP4	8674	broad.mit.edu	36	1	169946503	169946503	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001185127	exon5	c.G236T	p.R79I	.	.	.
VAMP4	8674	broad.mit.edu	36	1	169964332	169964332	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001185127	exon3	c.G68T	p.R23I	.	.	.
DNM3	26052	broad.mit.edu	36	1	170274107	170274107	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015569	exon7	c.C875T	p.T292I	.	.	.
GNB1	2782	broad.mit.edu	36	1	1711796	1711796	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002074	exon9	c.C597T	p.F199F	.	.	.
TNFSF18	8995	broad.mit.edu	36	1	171277430	171277430	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005092	exon3	c.C300T	p.C100C	.	.	.
PRDX6	9588	broad.mit.edu	36	1	171721184	171721184	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004905	exon3	c.A314G	p.D105G	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171765768	171765768	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178527	exon18	c.C2212T	p.R738C	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171769476	171769476	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178527	exon17	c.C2058A	p.I686I	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171784260	171784260	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178527	exon12	c.A1352G	p.H451R	.	.	.
ANKRD45	339416	broad.mit.edu	36	1	171862849	171862849	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198493	exon4	c.G569A	p.G190E	.	.	.
KLHL20	27252	broad.mit.edu	36	1	171992886	171992886	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014458	exon7	c.C1116T	p.G372G	.	.	.
RC3H1	149041	broad.mit.edu	36	1	172197578	172197578	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172071	exon11	c.T2110A	p.Y704N	.	.	.
RC3H1	149041	broad.mit.edu	36	1	172219295	172219295	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172071	exon3	c.G476A	p.R159Q	.	.	.
GPR52	9293	broad.mit.edu	36	1	172684624	172684624	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005684	exon1	c.C752A	p.S251Y	.	.	.
TNN	63923	broad.mit.edu	36	1	173352799	173352799	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022093	exon10	c.C2221T	p.R741C	.	.	.
TNR	7143	broad.mit.edu	36	1	173592177	173592177	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003285	exon16	c.C3019T	p.R1007W	.	.	.
TNR	7143	broad.mit.edu	36	1	173638915	173638915	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003285	exon4	c.C960T	p.G320G	.	.	.
TNR	7143	broad.mit.edu	36	1	173642020	173642020	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003285	exon3	c.C454T	p.R152X	.	.	.
RFWD2	64326	broad.mit.edu	36	1	174442340	174442340	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022457	exon1	c.A398G	p.D133G	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	174792206	174792206	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020318	exon2	c.A125C	p.Q42P	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	174792362	174792362	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020318	exon2	c.G281A	p.R94H	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	175005429	175005429	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020318	exon16	c.G4387A	p.D1463N	.	.	.
FAM5B	57795	broad.mit.edu	36	1	175516362	175516362	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021165	exon8	c.G1427A	p.R476H	.	.	.
SEC16B	89866	broad.mit.edu	36	1	176183687	176183687	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033127	exon13	c.A1559C	p.K520T	.	.	.
RASAL2	9462	broad.mit.edu	36	1	176693812	176693812	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170692	exon14	c.C2762T	p.S921L	.	.	.
FAM20B	9917	broad.mit.edu	36	1	177300185	177300185	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014864	exon6	c.G869A	p.R290H	.	.	.
ABL2	27	broad.mit.edu	36	1	177344975	177344975	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168239	exon11	c.G1942A	p.E648K	.	.	.
C1orf125	126859	broad.mit.edu	36	1	177646959	177646959	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144696	exon12	c.G1165T	p.D389Y	.	.	.
C1orf125	126859	broad.mit.edu	36	1	177704399	177704399	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144696	exon17	c.C1997T	p.S666L	.	.	.
NPHS2	7827	broad.mit.edu	36	1	177792838	177792838	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014625	exon5	c.C685T	p.R229X	.	.	.
QSOX1	5768	broad.mit.edu	36	1	178432374	178432374	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002826	exon12	c.A1823C	p.K608T	.	.	.
ACBD6	84320	broad.mit.edu	36	1	178728065	178728065	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032360	exon3	c.G346A	p.A116T	.	.	.
XPR1	9213	broad.mit.edu	36	1	179039154	179039154	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135669	exon4	c.C231T	p.L77L	.	.	.
XPR1	9213	broad.mit.edu	36	1	179039245	179039245	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135669	exon4	c.C322T	p.R108X	.	.	.
XPR1	9213	broad.mit.edu	36	1	179119775	179119775	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135669	exon14	c.C1846T	p.R616C	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179991112	179991112	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000721	exon28	c.C3945A	p.F1315L	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180030690	180030690	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000721	exon45	c.C5966T	p.S1989L	.	.	.
ACTL8	81569	broad.mit.edu	36	1	18025145	18025145	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030812	exon3	c.G645A	p.P215P	.	.	.
RNASEL	6041	broad.mit.edu	36	1	180822260	180822260	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021133	exon2	c.C305T	p.A102V	.	.	.
RGS16	6004	broad.mit.edu	36	1	180837870	180837870	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002928	exon4	c.G241A	p.A81T	.	.	.
DHX9	1660	broad.mit.edu	36	1	181095788	181095788	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001357	exon12	c.T1178G	p.F393C	.	.	.
LAMC2	3918	broad.mit.edu	36	1	181456668	181456668	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018891	exon5	c.C589T	p.R197C	.	.	.
LAMC2	3918	broad.mit.edu	36	1	181478962	181478962	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005562	exon23	c.G3386A	p.R1129Q	.	.	.
GLT25D2	23127	broad.mit.edu	36	1	182180038	182180038	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015101	exon10	c.G1312A	p.D438N	.	.	.
GLT25D2	23127	broad.mit.edu	36	1	182209423	182209423	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015101	exon4	c.C577T	p.L193L	.	.	.
GLT25D2	23127	broad.mit.edu	36	1	182210888	182210888	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015101	exon3	c.G458A	p.R153Q	.	.	.
FAM129A	116496	broad.mit.edu	36	1	183120431	183120431	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052966	exon5	c.T560G	p.F187C	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184145252	184145252	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031935	exon5	c.G782A	p.R261H	.	.	.
PRG4	10216	broad.mit.edu	36	1	184544618	184544618	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127709	exon5	c.G2865A	p.T955T	.	.	.
TPR	7175	broad.mit.edu	36	1	184556171	184556171	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003292	exon46	c.C6464T	p.S2155L	.	.	.
TPR	7175	broad.mit.edu	36	1	184587127	184587127	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003292	exon20	c.A2568C	p.E856D	.	.	.
FAM5C	339479	broad.mit.edu	36	1	188334472	188334472	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199051	exon8	c.C1600T	p.L534F	.	.	.
TAS1R2	80834	broad.mit.edu	36	1	19054055	19054055	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152232	exon3	c.G496A	p.A166T	.	.	.
TROVE2	6738	broad.mit.edu	36	1	191317991	191317991	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001173524	exon7	c.T1256G	p.M419R	.	.	.
CDC73	79577	broad.mit.edu	36	1	191365961	191365961	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024529	exon3	c.G272A	p.R91Q	.	.	.
B3GALT2	8707	broad.mit.edu	36	1	191416908	191416908	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003783	exon2	c.C408A	p.F136L	.	.	.
B3GALT2	8707	broad.mit.edu	36	1	191417114	191417114	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003783	exon2	c.C202T	p.R68W	.	.	.
KCNT2	343450	broad.mit.edu	36	1	194569677	194569677	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198503	exon17	c.G1920A	p.S640S	.	.	.
AKR7L	246181	broad.mit.edu	36	1	19466446	19466446	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145289	exon5	c.G734T	p.C245F	.	.	.
CFHR4	10877	broad.mit.edu	36	1	195138321	195138321	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006684	exon2	c.A209G	p.Y70C	.	.	.
CFHR4	10877	broad.mit.edu	36	1	195150339	195150339	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006684	exon4	c.C531T	p.Y177Y	.	.	.
CFHR5	81494	broad.mit.edu	36	1	195244389	195244389	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030787	exon10	c.C1663T	p.R555X	.	.	.
ASPM	259266	broad.mit.edu	36	1	195337746	195337746	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018136	exon18	c.T7258C	p.S2420P	.	.	.
ASPM	259266	broad.mit.edu	36	1	195338592	195338592	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018136	exon18	c.A6412G	p.T2138A	.	.	.
ASPM	259266	broad.mit.edu	36	1	195340604	195340604	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018136	exon18	c.C4400T	p.S1467F	.	.	.
ZBTB41	360023	broad.mit.edu	36	1	195436019	195436019	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194314	exon1	c.A208C	p.N70H	.	.	.
CRB1	23418	broad.mit.edu	36	1	195657028	195657028	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201253	exon6	c.G1447A	p.A483T	.	.	.
CRB1	23418	broad.mit.edu	36	1	195657330	195657330	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201253	exon6	c.C1749T	p.I583I	.	.	.
CRB1	23418	broad.mit.edu	36	1	195663373	195663373	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201253	exon7	c.C2295T	p.V765V	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196954006	196954006	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080921	exon11	c.C1122T	p.C374C	.	.	.
KIF14	9928	broad.mit.edu	36	1	198839660	198839660	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014875	exon9	c.G1793A	p.R598Q	.	.	.
CACNA1S	779	broad.mit.edu	36	1	199329755	199329755	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000069	exon3	c.C276A	p.F92L	.	.	.
LAD1	3898	broad.mit.edu	36	1	199620571	199620571	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005558	exon5	c.G1147T	p.E383X	.	.	.
IPO9	55705	broad.mit.edu	36	1	200092906	200092906	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018085	exon11	c.C1182A	p.F394L	.	.	.
PPP1R12B	4660	broad.mit.edu	36	1	200666486	200666486	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167857	exon7	c.G926A	p.R309Q	.	.	.
SYT2	127833	broad.mit.edu	36	1	200841377	200841377	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177402	exon2	c.G147T	p.E49D	.	.	.
PPFIA4	8497	broad.mit.edu	36	1	201292210	201292210	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015053	exon5	c.C673T	p.R225W	.	.	.
PPFIA4	8497	broad.mit.edu	36	1	201296048	201296048	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015053	exon9	c.G1146T	p.S382S	.	.	.
CHI3L1	1116	broad.mit.edu	36	1	201420359	201420359	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001276	exon4	c.G282C	p.L94F	.	.	.
SNRPE	6635	broad.mit.edu	36	1	202097970	202097970	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003094	exon2	c.A78C	p.Q26H	.	.	.
NFASC	23114	broad.mit.edu	36	1	203180144	203180144	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160331	exon1	c.A78C	p.E26D	.	.	.
NFASC	23114	broad.mit.edu	36	1	203210522	203210522	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160331	exon12	c.C1539T	p.V513V	.	.	.
RBBP5	5929	broad.mit.edu	36	1	203340843	203340843	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005057	exon4	c.G295A	p.D99N	.	.	.
PLA2G2F	64600	broad.mit.edu	36	1	20342633	20342633	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022819	exon3	c.C277T	p.L93L	.	.	.
CDK18	5129	broad.mit.edu	36	1	203758949	203758949	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_212503	exon2	c.C31T	p.R11C	.	.	.
ELK4	2005	broad.mit.edu	36	1	203855731	203855731	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001973	exon3	c.G1066A	p.A356T	.	.	.
RAB7L1	8934	broad.mit.edu	36	1	204007366	204007366	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135662	exon4	c.C235T	p.R79W	.	.	.
SLC26A9	115019	broad.mit.edu	36	1	204165707	204165707	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_134325	exon6	c.C653T	p.S218L	.	.	.
C1orf186	440712	broad.mit.edu	36	1	204408272	204408272	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007544	exon4	c.C140T	p.A47V	.	.	.
CTSE	1510	broad.mit.edu	36	1	204484254	204484254	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001910	exon1	c.G55A	p.G19R	.	.	.
DYRK3	8444	broad.mit.edu	36	1	204888250	204888250	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003582	exon3	c.G1084A	p.E362K	.	.	.
MAPKAPK2	9261	broad.mit.edu	36	1	204969372	204969372	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032960	exon4	c.G493A	p.E165K	.	.	.
IL20	50604	broad.mit.edu	36	1	205105947	205105947	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018724	exon1	c.C127T	p.R43X	.	.	.
CR2	1380	broad.mit.edu	36	1	205708792	205708792	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001006658	exon4	c.G659A	p.R220Q	.	.	.
CR2	1380	broad.mit.edu	36	1	205710971	205710971	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001006658	exon8	c.C1409T	p.A470V	.	.	.
CR1L	1379	broad.mit.edu	36	1	205918233	205918233	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175710	exon3	c.C345T	p.F115F	.	.	.
CR1L	1379	broad.mit.edu	36	1	205957494	205957494	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175710	exon11	c.G1477T	p.D493Y	.	.	.
LAMB3	3914	broad.mit.edu	36	1	207869737	207869737	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017402	exon9	c.G1100A	p.R367H	.	.	.
IRF6	3664	broad.mit.edu	36	1	208036421	208036421	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006147	exon4	c.G274A	p.E92K	.	.	.
C1orf107	27042	broad.mit.edu	36	1	208070863	208070863	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014388	exon3	c.G240A	p.K80K	.	.	.
C1orf107	27042	broad.mit.edu	36	1	208077063	208077063	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014388	exon6	c.A946C	p.N316H	.	.	.
PINK1	65018	broad.mit.edu	36	1	20844756	20844756	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032409	exon5	c.C1076T	p.A359V	.	.	.
SERTAD4	56256	broad.mit.edu	36	1	208482208	208482208	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019605	exon4	c.G974T	p.R325I	.	.	.
DTL	51514	broad.mit.edu	36	1	210340742	210340742	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016448	exon14	c.A1787C	p.E596A	.	.	.
EIF4G3	8672	broad.mit.edu	36	1	21059557	21059557	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003760	exon19	c.C2984A	p.T995N	.	.	.
FAM71A	149647	broad.mit.edu	36	1	210866091	210866091	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153606	exon1	c.G1249A	p.A417T	.	.	.
TATDN3	128387	broad.mit.edu	36	1	211055078	211055078	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146171	exon10	c.C803T	p.A268V	.	.	.
ANGEL2	90806	broad.mit.edu	36	1	211245217	211245217	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144567	exon5	c.C915T	p.C305C	.	.	.
ANGEL2	90806	broad.mit.edu	36	1	211245326	211245326	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144567	exon5	c.A806G	p.N269S	.	.	.
CENPF	1063	broad.mit.edu	36	1	212860763	212860763	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016343	exon6	c.G716A	p.R239K	.	.	.
CENPF	1063	broad.mit.edu	36	1	212885657	212885657	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016343	exon13	c.G6121A	p.E2041K	.	.	.
CENPF	1063	broad.mit.edu	36	1	212887343	212887343	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016343	exon13	c.G7807A	p.D2603N	.	.	.
KCTD3	51133	broad.mit.edu	36	1	213826468	213826468	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016121	exon9	c.G634T	p.E212X	.	.	.
USH2A	7399	broad.mit.edu	36	1	213968346	213968346	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206933	exon61	c.C11715T	p.R3905R	.	.	.
USH2A	7399	broad.mit.edu	36	1	214107108	214107108	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206933	exon44	c.C8709T	p.F2903F	.	.	.
USH2A	7399	broad.mit.edu	36	1	214205295	214205295	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206933	exon37	c.C7107A	p.F2369L	.	.	.
SPATA17	128153	broad.mit.edu	36	1	216014471	216014471	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138796	exon7	c.T692G	p.I231S	.	.	.
TGFB2	7042	broad.mit.edu	36	1	216645240	216645240	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003238	exon2	c.C453A	p.V151V	.	.	.
EPRS	2058	broad.mit.edu	36	1	218237138	218237138	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004446	exon18	c.T2351G	p.L784R	.	.	.
RAB3GAP2	25782	broad.mit.edu	36	1	218393368	218393368	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012414	exon33	c.T3649G	p.L1217V	.	.	.
RAB3GAP2	25782	broad.mit.edu	36	1	218450375	218450375	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012414	exon7	c.G590A	p.R197Q	.	.	.
HLX	3142	broad.mit.edu	36	1	219121239	219121239	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021958	exon2	c.G673A	p.A225T	.	.	.
USP48	84196	broad.mit.edu	36	1	21928852	21928852	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001032730	exon10	c.G1232A	p.R411Q	.	.	.
USP48	84196	broad.mit.edu	36	1	21956842	21956842	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001032730	exon2	c.G156A	p.P52P	.	.	.
HHIPL2	79802	broad.mit.edu	36	1	220771978	220771978	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024746	exon6	c.T1676C	p.I559T	.	.	.
MIA3	375056	broad.mit.edu	36	1	220868253	220868253	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198551	exon4	c.G1068T	p.Q356H	.	.	.
DISP1	84976	broad.mit.edu	36	1	221183129	221183129	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032890	exon2	c.C341T	p.S114L	.	.	.
SUSD4	55061	broad.mit.edu	36	1	221504747	221504747	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037175	exon5	c.T572C	p.V191A	.	.	.
DNAH14	127602	broad.mit.edu	36	1	223218877	223218877	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144989	exon5	c.G441A	p.P147P	.	.	.
LBR	3930	broad.mit.edu	36	1	223673693	223673693	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194442	exon5	c.G535T	p.E179X	.	.	.
ACBD3	64746	broad.mit.edu	36	1	224420238	224420238	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022735	exon2	c.A373C	p.N125H	.	.	.
PARP1	142	broad.mit.edu	36	1	224615807	224615807	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001618	exon23	c.A3022T	p.N1008Y	.	.	.
CDC42BPA	8476	broad.mit.edu	36	1	225571364	225571364	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014826	exon1	c.G143A	p.R48K	.	.	.
ZNF678	339500	broad.mit.edu	36	1	225909297	225909297	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178549	exon4	c.A888C	p.E296D	.	.	.
ZNF678	339500	broad.mit.edu	36	1	225909558	225909558	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178549	exon4	c.A1149C	p.K383N	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226504298	226504298	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052843	exon14	c.C4043T	p.A1348V	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226572047	226572048	+	Missense_Mutation	DNP	GG	TT	TT	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052843	exon52	c.13821_13822TT	.	.	.	.
ZBTB40	9923	broad.mit.edu	36	1	22711196	22711196	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014870	exon11	c.G2443A	p.E815K	.	.	.
NUP133	55746	broad.mit.edu	36	1	227667206	227667206	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018230	exon18	c.G2339A	p.R780H	.	.	.
URB2	9816	broad.mit.edu	36	1	227830044	227830044	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014777	exon2	c.G41A	p.S14N	.	.	.
TTC13	79573	broad.mit.edu	36	1	229128011	229128011	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024525	exon13	c.T1463G	p.V488G	.	.	.
TTC13	79573	broad.mit.edu	36	1	229142906	229142906	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024525	exon7	c.G692A	p.R231Q	.	.	.
C1orf124	83932	broad.mit.edu	36	1	229553887	229553887	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010984	exon4	c.G665A	p.G222D	.	.	.
SIPA1L2	57568	broad.mit.edu	36	1	230663438	230663438	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020808	exon8	c.C2913T	p.V971V	.	.	.
KIAA1383	54627	broad.mit.edu	36	1	231008581	231008581	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019090	exon1	c.G1189A	p.E397K	.	.	.
KIAA1383	54627	broad.mit.edu	36	1	231009219	231009219	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019090	exon1	c.G1827T	p.K609N	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231227525	231227525	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014801	exon26	c.A4595G	p.Y1532C	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231464490	231464490	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014801	exon3	c.G404A	p.R135Q	.	.	.
ARID4B	51742	broad.mit.edu	36	1	233411794	233411794	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031371	exon19	c.T2805G	p.N935K	.	.	.
B3GALNT2	148789	broad.mit.edu	36	1	233688581	233688581	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152490	exon8	c.C978T	p.V326V	.	.	.
LYST	1130	broad.mit.edu	36	1	234036035	234036035	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000081	exon6	c.G3024T	p.E1008D	.	.	.
LYST	1130	broad.mit.edu	36	1	234038638	234038638	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000081	exon5	c.T2103C	p.F701F	.	.	.
NID1	4811	broad.mit.edu	36	1	234211597	234211597	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002508	exon16	c.G3164A	p.R1055H	.	.	.
EDARADD	128178	broad.mit.edu	36	1	234712339	234712339	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145861	exon6	c.T415C	p.W139R	.	.	.
LGALS8	3964	broad.mit.edu	36	1	234768843	234768843	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201544	exon4	c.G176A	p.R59Q	.	.	.
HEATR1	55127	broad.mit.edu	36	1	234802375	234802375	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018072	exon26	c.T3666C	p.S1222S	.	.	.
ACTN2	88	broad.mit.edu	36	1	234979178	234979178	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001103	exon14	c.G1647A	p.E549E	.	.	.
ACTN2	88	broad.mit.edu	36	1	234984949	234984949	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001103	exon17	c.C1982T	p.A661V	.	.	.
ACTN2	88	broad.mit.edu	36	1	234987495	234987495	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001103	exon18	c.G2241A	p.A747A	.	.	.
ZNF436	80818	broad.mit.edu	36	1	23562168	23562168	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030634	exon3	c.C294T	p.S98S	.	.	.
RYR2	6262	broad.mit.edu	36	1	235778479	235778479	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001035	exon26	c.G3032A	p.R1011Q	.	.	.
RYR2	6262	broad.mit.edu	36	1	235873261	235873261	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001035	exon48	c.C7233T	p.A2411A	.	.	.
RYR2	6262	broad.mit.edu	36	1	235931936	235931936	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001035	exon66	c.A9403G	p.T3135A	.	.	.
RYR2	6262	broad.mit.edu	36	1	236015907	236015907	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001035	exon91	c.G13276T	p.E4426X	.	.	.
RYR2	6262	broad.mit.edu	36	1	236021420	236021420	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001035	exon93	c.C13545A	p.F4515L	.	.	.
RYR2	6262	broad.mit.edu	36	1	236049018	236049018	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001035	exon101	c.C14493T	p.I4831I	.	.	.
CHRM3	1131	broad.mit.edu	36	1	238138001	238138001	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000740	exon5	c.C627A	p.Y209X	.	.	.
FMN2	56776	broad.mit.edu	36	1	238407958	238407958	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020066	exon3	c.G1897A	p.D633N	.	.	.
RGS7	6000	broad.mit.edu	36	1	239041845	239041845	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002924	exon14	c.T1078G	p.L360V	.	.	.
KMO	8564	broad.mit.edu	36	1	239796500	239796500	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003679	exon9	c.G774T	p.Q258H	.	.	.
OPN3	23596	broad.mit.edu	36	1	239834454	239834454	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014322	exon2	c.C424T	p.R142C	.	.	.
CEP170	9859	broad.mit.edu	36	1	241369885	241369885	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042405	exon15	c.C3835T	p.R1279W	.	.	.
CEP170	9859	broad.mit.edu	36	1	241430448	241430448	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042405	exon6	c.C491A	p.A164D	.	.	.
C1orf100	200159	broad.mit.edu	36	1	242608532	242608532	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012970	exon4	c.G293A	p.R98Q	.	.	.
ADSS	159	broad.mit.edu	36	1	242641242	242641242	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126	exon12	c.C1288T	p.R430X	.	.	.
KIF26B	55083	broad.mit.edu	36	1	243770735	243770735	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018012	exon5	c.C1210T	p.R404W	.	.	.
KIF26B	55083	broad.mit.edu	36	1	243928883	243928883	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018012	exon14	c.G6099A	p.A2033A	.	.	.
SMYD3	64754	broad.mit.edu	36	1	244560455	244560455	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022743	exon4	c.G167T	p.G56V	.	.	.
ZNF670	93474	broad.mit.edu	36	1	245267486	245267486	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033213	exon4	c.G1058A	p.R353Q	.	.	.
ZNF670	93474	broad.mit.edu	36	1	245268276	245268276	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033213	exon4	c.T268C	p.L90L	.	.	.
ZNF124	7678	broad.mit.edu	36	1	245386631	245386631	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003431	exon4	c.C730T	p.R244C	.	.	.
VN1R5	317705	broad.mit.edu	36	1	245486100	245486100	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173858	exon1	c.A104C	p.K35T	.	.	.
NLRP3	114548	broad.mit.edu	36	1	245654649	245654649	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004895	exon3	c.G1281A	p.E427E	.	.	.
NLRP3	114548	broad.mit.edu	36	1	245655205	245655205	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004895	exon3	c.G1837T	p.E613X	.	.	.
OR2B11	127623	broad.mit.edu	36	1	245681131	245681131	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004492	exon1	c.G777A	p.A259A	.	.	.
OR2T8	343172	broad.mit.edu	36	1	246151702	246151702	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005522	exon1	c.A760G	p.I254V	.	.	.
OR2L8	391190	broad.mit.edu	36	1	246179699	246179699	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001963	exon1	c.G917T	p.R306I	.	.	.
OR2AK2	391191	broad.mit.edu	36	1	246196026	246196026	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004491	exon1	c.C770A	p.S257Y	.	.	.
OR2L3	391192	broad.mit.edu	36	1	246291307	246291307	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004687	exon1	c.A701C	p.K234T	.	.	.
OR2L3	391192	broad.mit.edu	36	1	246291400	246291400	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004687	exon1	c.G794A	p.R265Q	.	.	.
OR2M2	391194	broad.mit.edu	36	1	246409994	246409994	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004688	exon1	c.C84A	p.F28L	.	.	.
OR2M2	391194	broad.mit.edu	36	1	246410808	246410808	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004688	exon1	c.G898A	p.A300T	.	.	.
OR2G6	391211	broad.mit.edu	36	1	246752456	246752456	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013355	exon1	c.G886T	p.D296Y	.	.	.
OR2T11	127077	broad.mit.edu	36	1	246856547	246856547	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001964	exon1	c.G506A	p.R169Q	.	.	.
CLIC4	25932	broad.mit.edu	36	1	25013205	25013205	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013943	exon3	c.G216A	p.G72G	.	.	.
RHCE	6006	broad.mit.edu	36	1	25601801	25601802	+	Missense_Mutation	DNP	GC	AT	AT	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138617	exon3	c.358_359AT	.	.	.	.
RPS6KA1	6195	broad.mit.edu	36	1	26773181	26773181	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001006665	exon21	c.G2137A	p.A713T	.	.	.
SLC9A1	6548	broad.mit.edu	36	1	27353156	27353156	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003047	exon1	c.G257A	p.R86H	.	.	.
AHDC1	27245	broad.mit.edu	36	1	27749312	27749312	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029882	exon6	c.G1902A	p.P634P	.	.	.
STX12	23673	broad.mit.edu	36	1	28000812	28000812	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177424	exon4	c.G325T	p.D109Y	.	.	.
GMEB1	10691	broad.mit.edu	36	1	28909717	28909717	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006582	exon9	c.G997T	p.E333X	.	.	.
EPB41	2035	broad.mit.edu	36	1	29232209	29232209	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203342	exon10	c.T603C	p.D201D	.	.	.
EPB41	2035	broad.mit.edu	36	1	29252213	29252213	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203342	exon13	c.C1020T	p.V340V	.	.	.
PTPRU	10076	broad.mit.edu	36	1	29457649	29457649	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005704	exon3	c.G251A	p.R84Q	.	.	.
PTPRU	10076	broad.mit.edu	36	1	29524719	29524719	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005704	exon31	c.G4300A	p.D1434N	.	.	.
KPNA6	23633	broad.mit.edu	36	1	32408957	32408957	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012316	exon14	c.G1486A	p.D496N	.	.	.
SYNC	81493	broad.mit.edu	36	1	32933198	32933198	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161708	exon2	c.G1088T	p.R363I	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33863329	33863329	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052896	exon34	c.C5289T	p.S1763S	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33901219	33901219	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052896	exon26	c.G3993A	p.G1331G	.	.	.
CSMD2	114784	broad.mit.edu	36	1	34026862	34026862	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052896	exon12	c.C1469T	p.T490I	.	.	.
CSMD2	114784	broad.mit.edu	36	1	34057922	34057922	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052896	exon9	c.G1183A	p.D395N	.	.	.
ZMYM6	9204	broad.mit.edu	36	1	35225831	35225831	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007167	exon16	c.T3439G	p.F1147V	.	.	.
SFPQ	6421	broad.mit.edu	36	1	35425423	35425423	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005066	exon8	c.G1832A	p.R611Q	.	.	.
ZMYM4	9202	broad.mit.edu	36	1	35619737	35619737	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005095	exon9	c.C1360T	p.R454X	.	.	.
ZMYM4	9202	broad.mit.edu	36	1	35627259	35627259	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005095	exon14	c.T2425G	p.L809V	.	.	.
MAP7D1	55700	broad.mit.edu	36	1	36413151	36413151	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018067	exon6	c.C805T	p.R269W	.	.	.
THRAP3	9967	broad.mit.edu	36	1	36524603	36524603	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005119	exon4	c.G185A	p.R62K	.	.	.
CSF3R	1441	broad.mit.edu	36	1	36710743	36710743	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172313	exon7	c.C805T	p.R269C	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37118855	37118855	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000831	exon3	c.C517T	p.R173W	.	.	.
DFFB	1677	broad.mit.edu	36	1	3790039	3790039	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004402	exon7	c.G891T	p.E297D	.	.	.
CDCA8	55143	broad.mit.edu	36	1	37945244	37945244	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018101	exon10	c.G719A	p.R240Q	.	.	.
C1orf174	339448	broad.mit.edu	36	1	3797008	3797008	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207356	exon3	c.C603T	p.N201N	.	.	.
UTP11L	51118	broad.mit.edu	36	1	38261835	38261835	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016037	exon8	c.A710C	p.E237A	.	.	.
MACF1	23499	broad.mit.edu	36	1	39571489	39571489	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033044	exon1	c.G1962A	p.K654K	.	.	.
KIAA0754	643314	broad.mit.edu	36	1	39649440	39649440	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015038	exon1	c.C916T	p.L306F	.	.	.
MACF1	23499	broad.mit.edu	36	1	39692056	39692056	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012090	exon85	c.T14656C	p.C4886R	.	.	.
RLF	6018	broad.mit.edu	36	1	40460844	40460844	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012421	exon6	c.C822T	p.V274V	.	.	.
RLF	6018	broad.mit.edu	36	1	40474812	40474812	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012421	exon8	c.G1851T	p.K617N	.	.	.
TMCO2	127391	broad.mit.edu	36	1	40489639	40489639	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008740	exon2	c.G335A	p.R112Q	.	.	.
ZMPSTE24	10269	broad.mit.edu	36	1	40506723	40506723	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005857	exon4	c.G403A	p.A135T	.	.	.
ZNF643	65243	broad.mit.edu	36	1	40700731	40700731	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023070	exon5	c.C488T	p.S163L	.	.	.
ZNF643	65243	broad.mit.edu	36	1	40701727	40701727	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023070	exon5	c.G1484T	p.R495I	.	.	.
ZNF642	339559	broad.mit.edu	36	1	40734146	40734146	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198494	exon6	c.A1409G	p.N470S	.	.	.
CCDC30	728621	broad.mit.edu	36	1	42827626	42827626	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080850	exon9	c.C1268T	p.T423I	.	.	.
PPIH	10465	broad.mit.edu	36	1	42904273	42904273	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006347	exon7	c.C372A	p.F124L	.	.	.
YBX1	4904	broad.mit.edu	36	1	42939236	42939236	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004559	exon7	c.C938T	p.S313L	.	.	.
CCDC23	374969	broad.mit.edu	36	1	43054774	43054774	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199342	exon2	c.C29A	p.T10N	.	.	.
KIAA0467	23334	broad.mit.edu	36	1	43675454	43675454	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015284	exon28	c.G3363A	p.A1121A	.	.	.
RPS8	6202	broad.mit.edu	36	1	45014363	45014363	+	Silent	SNP	G	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012	exon2	c.G75C	p.R25R	.	.	.
MKNK1	8569	broad.mit.edu	36	1	46799815	46799815	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198973	exon11	c.C927A	p.L309L	.	.	.
KIAA0494	9813	broad.mit.edu	36	1	46956194	46956194	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014774	exon1	c.C153T	p.F51F	.	.	.
CYP4B1	1580	broad.mit.edu	36	1	47056406	47056406	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099772	exon11	c.G1289A	p.R430H	.	.	.
STIL	6491	broad.mit.edu	36	1	47540496	47540496	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001048166	exon4	c.G262A	p.E88K	.	.	.
CMPK1	51727	broad.mit.edu	36	1	47613230	47613230	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136140	exon3	c.G387A	p.E129E	.	.	.
SPATA6	54558	broad.mit.edu	36	1	48598000	48598000	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019073	exon10	c.C939T	p.F313F	.	.	.
SPATA6	54558	broad.mit.edu	36	1	48691328	48691328	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019073	exon2	c.T114C	p.F38F	.	.	.
AGBL4	84871	broad.mit.edu	36	1	48829174	48829174	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032785	exon10	c.A1022G	p.N341S	.	.	.
TTC39A	22996	broad.mit.edu	36	1	51526496	51526496	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144832	exon18	c.G1667A	p.R556Q	.	.	.
NRD1	4898	broad.mit.edu	36	1	52036565	52036565	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002525	exon24	c.G2752T	p.E918X	.	.	.
ZCCHC11	23318	broad.mit.edu	36	1	52663721	52663721	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009881	exon29	c.A4758G	p.A1586A	.	.	.
ZCCHC11	23318	broad.mit.edu	36	1	52727183	52727183	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009881	exon9	c.C1501T	p.R501C	.	.	.
PODN	127435	broad.mit.edu	36	1	53319059	53319059	+	Nonsense_Mutation	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199080	exon11	c.C1671G	p.Y557X	.	.	.
DMRTB1	63948	broad.mit.edu	36	1	53702975	53702975	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033067	exon3	c.G828A	p.P276P	.	.	.
LRRC42	115353	broad.mit.edu	36	1	54196448	54196448	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052940	exon3	c.C512A	p.S171Y	.	.	.
CYB5RL	606495	broad.mit.edu	36	1	54412972	54412972	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031672	exon8	c.G856A	p.A286T	.	.	.
USP24	23358	broad.mit.edu	36	1	55362751	55362751	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015306	exon35	c.C4099T	p.R1367X	.	.	.
USP24	23358	broad.mit.edu	36	1	55395290	55395290	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015306	exon12	c.C1365A	p.Y455X	.	.	.
PPAP2B	8613	broad.mit.edu	36	1	56734933	56734933	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003713	exon6	c.T814C	p.F272L	.	.	.
PRKAA2	5563	broad.mit.edu	36	1	56912683	56912683	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006252	exon2	c.A136C	p.I46L	.	.	.
PRKAA2	5563	broad.mit.edu	36	1	56942663	56942663	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006252	exon7	c.G1220A	p.R407Q	.	.	.
C1orf168	199920	broad.mit.edu	36	1	56958529	56958529	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004303	exon18	c.G2036T	p.G679V	.	.	.
C1orf168	199920	broad.mit.edu	36	1	56961889	56961889	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004303	exon17	c.G1934A	p.R645K	.	.	.
NFIA	4774	broad.mit.edu	36	1	61642484	61642484	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145512	exon9	c.T1331G	p.F444C	.	.	.
TM2D1	83941	broad.mit.edu	36	1	61947626	61947626	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032027	exon3	c.G310A	p.E104K	.	.	.
L1TD1	54596	broad.mit.edu	36	1	62445393	62445393	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019079	exon3	c.G505A	p.E169K	.	.	.
DOCK7	85440	broad.mit.edu	36	1	62727250	62727250	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033407	exon41	c.G5343T	p.K1781N	.	.	.
DOCK7	85440	broad.mit.edu	36	1	62733881	62733881	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033407	exon38	c.A4890G	p.E1630E	.	.	.
DOCK7	85440	broad.mit.edu	36	1	62873079	62873079	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033407	exon9	c.A988C	p.I330L	.	.	.
ATG4C	84938	broad.mit.edu	36	1	63057377	63057377	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178221	exon5	c.G508T	p.E170X	.	.	.
ATG4C	84938	broad.mit.edu	36	1	63057535	63057535	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178221	exon5	c.G666T	p.K222N	.	.	.
EFCAB7	84455	broad.mit.edu	36	1	63764013	63764013	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032437	exon2	c.A182G	p.Y61C	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64880166	64880166	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020925	exon8	c.C929A	p.T310N	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64892136	64892136	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020925	exon11	c.C1495T	p.R499W	.	.	.
JAK1	3716	broad.mit.edu	36	1	65082392	65082392	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002227	exon17	c.G2346A	p.T782T	.	.	.
TAS1R1	80835	broad.mit.edu	36	1	6561397	6561397	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177540	exon5	c.G930A	p.E310E	.	.	.
LEPR	3953	broad.mit.edu	36	1	65858243	65858243	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001003679	exon17	c.A2440C	p.I814L	.	.	.
SGIP1	84251	broad.mit.edu	36	1	66967562	66967562	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032291	exon20	c.G1770T	p.M590I	.	.	.
TCTEX1D1	200132	broad.mit.edu	36	1	67014565	67014565	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152665	exon4	c.T227G	p.F76C	.	.	.
RPE65	6121	broad.mit.edu	36	1	68677477	68677477	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000329	exon8	c.C843A	p.S281S	.	.	.
LRRC7	57554	broad.mit.edu	36	1	70277407	70277407	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020794	exon19	c.C3198T	p.I1066I	.	.	.
LRRC7	57554	broad.mit.edu	36	1	70314396	70314396	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020794	exon22	c.C4165T	p.R1389C	.	.	.
LRRC40	55631	broad.mit.edu	36	1	70394009	70394009	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017768	exon11	c.G1279A	p.V427I	.	.	.
ANKRD13C	81573	broad.mit.edu	36	1	70553780	70553780	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030816	exon4	c.G635A	p.R212Q	.	.	.
ZRANB2	9406	broad.mit.edu	36	1	71305167	71305167	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005455	exon9	c.G809A	p.R270Q	.	.	.
CAMTA1	23261	broad.mit.edu	36	1	7232186	7232186	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015215	exon5	c.C351T	p.Y117Y	.	.	.
TNNI3K	51086	broad.mit.edu	36	1	74581149	74581149	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199327	exon10	c.C1021A	p.H341N	.	.	.
TNNI3K	51086	broad.mit.edu	36	1	74592285	74592285	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199327	exon13	c.G1364A	p.R455H	.	.	.
TNNI3K	51086	broad.mit.edu	36	1	74607684	74607684	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199327	exon18	c.C1797T	p.C599C	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74859017	74859017	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002912	exon8	c.T989C	p.L330P	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74870016	74870016	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002912	exon7	c.C788T	p.A263V	.	.	.
CAMTA1	23261	broad.mit.edu	36	1	7623139	7623139	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015215	exon7	c.C603T	p.T201T	.	.	.
ST6GALNAC3	256435	broad.mit.edu	36	1	76552235	76552235	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152996	exon2	c.G176A	p.R59Q	.	.	.
ST6GALNAC3	256435	broad.mit.edu	36	1	76650443	76650443	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152996	exon3	c.C376T	p.R126X	.	.	.
PER3	8863	broad.mit.edu	36	1	7770785	7770785	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016831	exon4	c.C484A	p.L162M	.	.	.
AK5	26289	broad.mit.edu	36	1	77756972	77756972	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012093	exon11	c.T1205G	p.I402S	.	.	.
USP33	23032	broad.mit.edu	36	1	77966658	77966658	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015017	exon11	c.G1138A	p.E380K	.	.	.
NEXN	91624	broad.mit.edu	36	1	78156270	78156270	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144573	exon4	c.T257C	p.V86A	.	.	.
DNAJB4	11080	broad.mit.edu	36	1	78251455	78251455	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007034	exon2	c.G344A	p.R115Q	.	.	.
PTGFR	5737	broad.mit.edu	36	1	78774898	78774898	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000959	exon3	c.A1018C	p.N340H	.	.	.
ERRFI1	54206	broad.mit.edu	36	1	7995985	7995985	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018948	exon4	c.G1261A	p.A421T	.	.	.
LPHN2	23266	broad.mit.edu	36	1	82223555	82223555	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012302	exon19	c.G3385T	p.D1129Y	.	.	.
WDR63	126820	broad.mit.edu	36	1	85366991	85366991	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145172	exon21	c.T2330G	p.F777C	.	.	.
SYDE2	84144	broad.mit.edu	36	1	85397118	85397118	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032184	exon7	c.G3488A	p.R1163Q	.	.	.
ZNHIT6	54680	broad.mit.edu	36	1	85946270	85946270	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017953	exon1	c.T286A	p.W96R	.	.	.
CLCA1	1179	broad.mit.edu	36	1	86725014	86725014	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001285	exon7	c.C1172T	p.S391L	.	.	.
CLCA4	22802	broad.mit.edu	36	1	86805820	86805820	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012128	exon7	c.C1080T	p.I360I	.	.	.
HS2ST1	9653	broad.mit.edu	36	1	87311440	87311440	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134492	exon2	c.T360C	p.D120D	.	.	.
CCBL2	56267	broad.mit.edu	36	1	89187481	89187481	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008662	exon10	c.C920A	p.S307Y	.	.	.
GBP1	2633	broad.mit.edu	36	1	89301447	89301447	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002053	exon2	c.G59A	p.R20Q	.	.	.
GBP2	2634	broad.mit.edu	36	1	89348136	89348136	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004120	exon10	c.C1471T	p.R491C	.	.	.
GBP6	163351	broad.mit.edu	36	1	89622278	89622278	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198460	exon10	c.G1507A	p.E503K	.	.	.
LRRC8B	23507	broad.mit.edu	36	1	89822105	89822105	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015350	exon5	c.C1308A	p.V436V	.	.	.
LRRC8D	55144	broad.mit.edu	36	1	90171966	90171966	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134479	exon3	c.A751G	p.T251A	.	.	.
ZNF326	284695	broad.mit.edu	36	1	90260470	90260470	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182976	exon11	c.C1379T	p.A460V	.	.	.
BRDT	676	broad.mit.edu	36	1	92219522	92219522	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207189	exon11	c.A1860C	p.T620T	.	.	.
EPHX4	253152	broad.mit.edu	36	1	92290743	92290743	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173567	exon6	c.A797G	p.Y266C	.	.	.
C1orf146	388649	broad.mit.edu	36	1	92482412	92482412	+	Nonsense_Mutation	SNP	G	T	T	rs61732740	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012425	exon4	c.G211T	p.E71X	.	.	.
EVI5	7813	broad.mit.edu	36	1	92915333	92915333	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005665	exon10	c.G1260A	p.T420T	.	.	.
MTF2	22823	broad.mit.edu	36	1	93367473	93367473	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007358	exon11	c.G1040A	p.R347Q	.	.	.
FNBP1L	54874	broad.mit.edu	36	1	93737621	93737621	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024948	exon2	c.C33T	p.F11F	.	.	.
ABCA4	24	broad.mit.edu	36	1	94243591	94243591	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000350	exon44	c.C6141T	p.I2047I	.	.	.
ABCD3	5825	broad.mit.edu	36	1	94727879	94727879	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002858	exon14	c.C1168T	p.R390W	.	.	.
CNN3	1266	broad.mit.edu	36	1	95140337	95140337	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001839	exon4	c.C312T	p.F104F	.	.	.
RWDD3	25950	broad.mit.edu	36	1	95482668	95482668	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199682	exon2	c.G399A	p.T133T	.	.	.
CLSTN1	22883	broad.mit.edu	36	1	9717805	9717805	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014944	exon13	c.C1868G	p.A623G	.	.	.
DPYD	1806	broad.mit.edu	36	1	97753929	97753929	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000110	exon13	c.C1681T	p.R561X	.	.	.
LPPR5	163404	broad.mit.edu	36	1	99131217	99131217	+	Read-through	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037317	exon6	c.G965T	p.X322L	.	.	.
NMNAT1	64802	broad.mit.edu	36	1	9958346	9958346	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022787	exon3	c.G225T	p.K75N	.	.	.
PGR	5241	broad.mit.edu	36	11	100418025	100418025	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000926	exon7	c.G2507A	p.R836Q	.	.	.
KIAA1377	57562	broad.mit.edu	36	11	101298661	101298661	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020802	exon2	c.C208T	p.R70X	.	.	.
KIAA1377	57562	broad.mit.edu	36	11	101338610	101338610	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020802	exon6	c.C1634T	p.S545F	.	.	.
MMP7	4316	broad.mit.edu	36	11	101903570	101903570	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002423	exon3	c.C379T	p.R127X	.	.	.
MMP8	4317	broad.mit.edu	36	11	102098540	102098540	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002424	exon2	c.C177T	p.I59I	.	.	.
CASP5	838	broad.mit.edu	36	11	104383182	104383182	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136112	exon3	c.G310A	p.D104N	.	.	.
KIAA1826	84437	broad.mit.edu	36	11	105385500	105385500	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032424	exon3	c.G1010A	p.R337Q	.	.	.
KBTBD3	143879	broad.mit.edu	36	11	105429098	105429098	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152433	exon3	c.A1528G	p.T510A	.	.	.
KBTBD3	143879	broad.mit.edu	36	11	105429420	105429420	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152433	exon3	c.C1206T	p.L402L	.	.	.
ELMOD1	55531	broad.mit.edu	36	11	107006399	107006399	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130037	exon3	c.C64T	p.R22C	.	.	.
ELMOD1	55531	broad.mit.edu	36	11	107006650	107006650	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130037	exon4	c.G178A	p.D60N	.	.	.
CUL5	8065	broad.mit.edu	36	11	107428729	107428729	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003478	exon5	c.G544T	p.E182X	.	.	.
CTR9	9646	broad.mit.edu	36	11	10746495	10746495	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014633	exon16	c.C1990T	p.R664C	.	.	.
CTR9	9646	broad.mit.edu	36	11	10748728	10748728	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014633	exon18	c.C2345T	p.A782V	.	.	.
NPAT	4863	broad.mit.edu	36	11	107548597	107548597	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002519	exon13	c.C2324T	p.S775F	.	.	.
NPAT	4863	broad.mit.edu	36	11	107565095	107565095	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002519	exon6	c.G504A	p.S168S	.	.	.
ATM	472	broad.mit.edu	36	11	107626833	107626833	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000051	exon10	c.G1431T	p.K477N	.	.	.
ATM	472	broad.mit.edu	36	11	107677595	107677595	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000051	exon35	c.C5188T	p.R1730X	.	.	.
ATM	472	broad.mit.edu	36	11	107693340	107693340	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000051	exon43	c.C6229A	p.L2077I	.	.	.
EIF4G2	1982	broad.mit.edu	36	11	10780435	10780435	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001418	exon12	c.A1120C	p.M374L	.	.	.
EXPH5	23086	broad.mit.edu	36	11	107888680	107888680	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015065	exon6	c.G2764T	p.E922X	.	.	.
EXPH5	23086	broad.mit.edu	36	11	107890718	107890718	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015065	exon6	c.C726T	p.F242F	.	.	.
ZC3H12C	85463	broad.mit.edu	36	11	109513087	109513087	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033390	exon2	c.A511G	p.K171E	.	.	.
ARHGAP20	57569	broad.mit.edu	36	11	109956282	109956282	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020809	exon16	c.G2598T	p.K866N	.	.	.
ARHGAP20	57569	broad.mit.edu	36	11	109962250	109962250	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020809	exon13	c.C1315T	p.R439X	.	.	.
ARHGAP20	57569	broad.mit.edu	36	11	109966694	109966694	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020809	exon12	c.T1193C	p.F398S	.	.	.
C11orf53	341032	broad.mit.edu	36	11	110661915	110661915	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198498	exon4	c.C637T	p.H213Y	.	.	.
C11orf88	399949	broad.mit.edu	36	11	110891988	110891988	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100388	exon3	c.C282A	p.I94I	.	.	.
LAYN	143903	broad.mit.edu	36	11	110919991	110919991	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178834	exon2	c.C219T	p.I73I	.	.	.
FDXACB1	91893	broad.mit.edu	36	11	111251333	111251333	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138378	exon5	c.T1398C	p.I466I	.	.	.
PIH1D2	120379	broad.mit.edu	36	11	111447680	111447680	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001082619	exon3	c.A190C	p.K64Q	.	.	.
NCAM1	4684	broad.mit.edu	36	11	112608209	112608209	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001076682	exon10	c.C1319T	p.S440L	.	.	.
TTC12	54970	broad.mit.edu	36	11	112716639	112716639	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017868	exon11	c.C870A	p.I290I	.	.	.
USP28	57646	broad.mit.edu	36	11	113203246	113203246	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020886	exon11	c.G1106T	p.R369I	.	.	.
HTR3B	9177	broad.mit.edu	36	11	113318923	113318923	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006028	exon7	c.C706T	p.R236C	.	.	.
HTR3A	3359	broad.mit.edu	36	11	113362057	113362057	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000869	exon6	c.C673T	p.R225W	.	.	.
ZBTB16	7704	broad.mit.edu	36	11	113439578	113439578	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006006	exon2	c.G346A	p.E116K	.	.	.
C11orf71	54494	broad.mit.edu	36	11	113776030	113776030	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019021	exon1	c.A234C	p.P78P	.	.	.
RBM7	10179	broad.mit.edu	36	11	113783549	113783549	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016090	exon5	c.C611A	p.S204Y	.	.	.
CADM1	23705	broad.mit.edu	36	11	114552485	114552485	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014333	exon10	c.C1248T	p.D416D	.	.	.
BUD13	84811	broad.mit.edu	36	11	116136686	116136686	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032725	exon5	c.G1229A	p.R410Q	.	.	.
SIK3	23387	broad.mit.edu	36	11	116303228	116303228	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025164	exon4	c.T359G	p.F120C	.	.	.
BACE1	23621	broad.mit.edu	36	11	116665539	116665539	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138973	exon9	c.C1252T	p.R418C	.	.	.
CD3E	916	broad.mit.edu	36	11	117688763	117688763	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000733	exon6	c.G324A	p.A108A	.	.	.
CD3D	915	broad.mit.edu	36	11	117715140	117715140	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000732	exon5	c.C463T	p.R155X	.	.	.
CD3G	917	broad.mit.edu	36	11	117725710	117725710	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000073	exon3	c.C122T	p.S41L	.	.	.
UBE4A	9354	broad.mit.edu	36	11	117748502	117748502	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004788	exon6	c.G632A	p.R211Q	.	.	.
PHLDB1	23187	broad.mit.edu	36	11	118015166	118015166	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144758	exon12	c.C2723T	p.S908L	.	.	.
DDX6	1656	broad.mit.edu	36	11	118132235	118132235	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004397	exon11	c.G1118A	p.R373Q	.	.	.
ABCG4	64137	broad.mit.edu	36	11	118532812	118532812	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142505	exon9	c.G946A	p.E316K	.	.	.
USP2	9099	broad.mit.edu	36	11	118749114	118749114	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004205	exon2	c.C287T	p.T96I	.	.	.
ARHGEF12	23365	broad.mit.edu	36	11	119835149	119835149	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198665	exon25	c.T2380C	p.F794L	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120207896	120207896	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014619	exon5	c.G637A	p.A213T	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120251065	120251065	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014619	exon9	c.T1067C	p.L356S	.	.	.
TECTA	7007	broad.mit.edu	36	11	120485216	120485216	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005422	exon3	c.C285T	p.F95F	.	.	.
TECTA	7007	broad.mit.edu	36	11	120503858	120503858	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005422	exon8	c.C1962T	p.F654F	.	.	.
TECTA	7007	broad.mit.edu	36	11	120542647	120542647	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005422	exon17	c.T5534C	p.F1845S	.	.	.
SC5DL	6309	broad.mit.edu	36	11	120683236	120683236	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006918	exon5	c.C705A	p.F235L	.	.	.
CRTAM	56253	broad.mit.edu	36	11	122229917	122229917	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019604	exon4	c.G403T	p.E135X	.	.	.
MICALCL	84953	broad.mit.edu	36	11	12272764	12272764	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032867	exon3	c.G1210T	p.D404Y	.	.	.
GRAMD1B	57476	broad.mit.edu	36	11	122982663	122982663	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020716	exon10	c.A1031G	p.D344G	.	.	.
OR6X1	390260	broad.mit.edu	36	11	123129576	123129576	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005188	exon1	c.T861G	p.I287M	.	.	.
OR6T1	219874	broad.mit.edu	36	11	123318892	123318892	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005187	exon1	c.C864T	p.F288F	.	.	.
OR6T1	219874	broad.mit.edu	36	11	123319507	123319507	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005187	exon1	c.C249T	p.V83V	.	.	.
OR10S1	219873	broad.mit.edu	36	11	123353006	123353006	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004474	exon1	c.C603T	p.L201L	.	.	.
OR10G4	390264	broad.mit.edu	36	11	123391589	123391589	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004462	exon1	c.A98G	p.Y33C	.	.	.
CCDC15	80071	broad.mit.edu	36	11	124362436	124362436	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025004	exon8	c.G1104A	p.Q368Q	.	.	.
FEZ1	9638	broad.mit.edu	36	11	124823623	124823623	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005103	exon9	c.G1147A	p.D383N	.	.	.
FEZ1	9638	broad.mit.edu	36	11	124835761	124835761	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005103	exon5	c.G510T	p.E170D	.	.	.
STT3A	3703	broad.mit.edu	36	11	124980787	124980787	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152713	exon7	c.A562C	p.K188Q	.	.	.
CDON	50937	broad.mit.edu	36	11	125359068	125359068	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016952	exon16	c.C2904T	p.I968I	.	.	.
CDON	50937	broad.mit.edu	36	11	125370104	125370104	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016952	exon13	c.C2416T	p.R806W	.	.	.
FLI1	2313	broad.mit.edu	36	11	128147963	128147963	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167681	exon4	c.C363T	p.I121I	.	.	.
ARHGAP32	9743	broad.mit.edu	36	11	128347812	128347812	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014715	exon12	c.G2710A	p.E904K	.	.	.
ARNTL	406	broad.mit.edu	36	11	13332541	13332541	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001030272	exon4	c.G110A	p.R37H	.	.	.
JAM3	83700	broad.mit.edu	36	11	133519379	133519379	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032801	exon4	c.A425G	p.K142R	.	.	.
NCAPD3	23310	broad.mit.edu	36	11	133544156	133544156	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015261	exon25	c.C3105T	p.F1035F	.	.	.
GLB1L3	112937	broad.mit.edu	36	11	133656483	133656483	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080407	exon4	c.A365G	p.Y122C	.	.	.
SPON1	10418	broad.mit.edu	36	11	14238781	14238781	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006108	exon14	c.C1902T	p.C634C	.	.	.
SPON1	10418	broad.mit.edu	36	11	14240908	14240908	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006108	exon15	c.C2070T	p.F690F	.	.	.
CYP2R1	120227	broad.mit.edu	36	11	14863955	14863955	+	Missense_Mutation	SNP	C	T	T	rs61744571	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024514	exon2	c.G310A	p.E104K	.	.	.
RPS13	6207	broad.mit.edu	36	11	17055331	17055331	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017	exon3	c.T111G	p.I37M	.	.	.
KCNC1	3746	broad.mit.edu	36	11	17714263	17714263	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004976	exon1	c.C138T	p.F46F	.	.	.
SAA4	6291	broad.mit.edu	36	11	18209632	18209632	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006512	exon4	c.A386C	p.K129T	.	.	.
TMEM86A	144110	broad.mit.edu	36	11	18679787	18679787	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153347	exon3	c.G378A	p.A126A	.	.	.
MRGPRX1	259249	broad.mit.edu	36	11	18912744	18912744	+	Missense_Mutation	SNP	C	T	T	rs55954376	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147199	exon1	c.G164A	p.R55H	.	.	.
MRGPRX1	259249	broad.mit.edu	36	11	18912877	18912877	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147199	exon1	c.G31T	p.E11X	.	.	.
DBX1	120237	broad.mit.edu	36	11	20137356	20137356	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029865	exon2	c.C426T	p.F142F	.	.	.
GAS2	2620	broad.mit.edu	36	11	22653084	22653084	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143830	exon2	c.T93G	p.A31A	.	.	.
LUZP2	338645	broad.mit.edu	36	11	24707355	24707355	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009909	exon2	c.C127T	p.R43C	.	.	.
CCDC34	91057	broad.mit.edu	36	11	27328420	27328420	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080654	exon3	c.C641A	p.S214Y	.	.	.
KIF18A	81930	broad.mit.edu	36	11	28076022	28076022	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031217	exon2	c.C49T	p.R17C	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29990537	29990537	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002233	exon2	c.C265T	p.R89W	.	.	.
DCDC1	341019	broad.mit.edu	36	11	31306334	31306334	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181807	exon3	c.G70A	p.A24T	.	.	.
EIF3M	10480	broad.mit.edu	36	11	32572038	32572038	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006360	exon6	c.A584G	p.D195G	.	.	.
CCDC73	493860	broad.mit.edu	36	11	32592193	32592193	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008391	exon16	c.T2247C	p.C749C	.	.	.
DEPDC7	91614	broad.mit.edu	36	11	33011402	33011402	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139160	exon9	c.G1334T	p.R445I	.	.	.
ZNF195	7748	broad.mit.edu	36	11	3337610	3337610	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007152	exon4	c.A988G	p.R330G	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33523386	33523386	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012194	exon2	c.C2380T	p.R794X	.	.	.
SLC1A2	6506	broad.mit.edu	36	11	35295501	35295501	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004171	exon2	c.T156C	p.F52F	.	.	.
PAMR1	25891	broad.mit.edu	36	11	35410540	35410540	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001991	exon11	c.C2103T	p.L701L	.	.	.
PAMR1	25891	broad.mit.edu	36	11	35410659	35410659	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001991	exon11	c.A1984G	p.T662A	.	.	.
RAG1	5896	broad.mit.edu	36	11	36554120	36554120	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000448	exon2	c.G2690A	p.R897Q	.	.	.
TRIM21	6737	broad.mit.edu	36	11	4368147	4368147	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003141	exon2	c.C69T	p.F23F	.	.	.
ACCS	84680	broad.mit.edu	36	11	44061433	44061433	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032592	exon13	c.G1250T	p.R417I	.	.	.
OR52K2	119774	broad.mit.edu	36	11	4427419	4427419	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005172	exon1	c.C274T	p.R92W	.	.	.
OR52K2	119774	broad.mit.edu	36	11	4427611	4427611	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005172	exon1	c.A466G	p.T156A	.	.	.
TSPAN18	90139	broad.mit.edu	36	11	44884597	44884597	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130783	exon3	c.C54A	p.F18L	.	.	.
ZNF408	79797	broad.mit.edu	36	11	46683171	46683171	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024741	exon5	c.C1345T	p.R449W	.	.	.
CKAP5	9793	broad.mit.edu	36	11	46789177	46789177	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008938	exon5	c.C586T	p.R196W	.	.	.
LRP4	4038	broad.mit.edu	36	11	46868613	46868613	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002334	exon14	c.A1706C	p.Y569S	.	.	.
AGBL2	79841	broad.mit.edu	36	11	47641160	47641160	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024783	exon17	c.A2529C	p.R843S	.	.	.
OR52R1	119695	broad.mit.edu	36	11	4781414	4781414	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005177	exon1	c.C773G	p.A258G	.	.	.
OR52R1	119695	broad.mit.edu	36	11	4781758	4781758	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005177	exon1	c.C429T	p.V143V	.	.	.
OR52R1	119695	broad.mit.edu	36	11	4782095	4782095	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005177	exon1	c.C92T	p.A31V	.	.	.
OR4X2	119764	broad.mit.edu	36	11	48223919	48223919	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004727	exon1	c.T688C	p.S230P	.	.	.
OR4X1	390113	broad.mit.edu	36	11	48242065	48242065	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004726	exon1	c.C77A	p.S26Y	.	.	.
OR51S1	119692	broad.mit.edu	36	11	4826649	4826649	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004758	exon1	c.C366A	p.V122V	.	.	.
OR4S1	256148	broad.mit.edu	36	11	48285205	48285205	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004725	exon1	c.T855C	p.Y285Y	.	.	.
FOLH1	2346	broad.mit.edu	36	11	49132554	49132554	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193471	exon17	c.A1645C	p.K549Q	.	.	.
OR52J3	119679	broad.mit.edu	36	11	5024783	5024783	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001916	exon1	c.T452C	p.V151A	.	.	.
OR4A5	81318	broad.mit.edu	36	11	51268524	51268524	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005272	exon1	c.G448A	p.G150S	.	.	.
OR52A1	23538	broad.mit.edu	36	11	5129502	5129502	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012375	exon1	c.T674G	p.F225C	.	.	.
OR52A1	23538	broad.mit.edu	36	11	5130150	5130150	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012375	exon1	c.A26G	p.Y9C	.	.	.
OR4C46	119749	broad.mit.edu	36	11	51372053	51372053	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004703	exon1	c.T196G	p.F66V	.	.	.
HBE1	3046	broad.mit.edu	36	11	5247348	5247348	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005330	exon2	c.T227C	p.I76T	.	.	.
OR51B2	79345	broad.mit.edu	36	11	5301982	5301982	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033180	exon1	c.G122A	p.G41D	.	.	.
OR51B5	282763	broad.mit.edu	36	11	5321089	5321089	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005567	exon1	c.G242A	p.G81E	.	.	.
OR51I2	390064	broad.mit.edu	36	11	5431625	5431625	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004754	exon1	c.G331T	p.E111X	.	.	.
OR51I2	390064	broad.mit.edu	36	11	5431772	5431772	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004754	exon1	c.C478T	p.P160S	.	.	.
OR4A15	81328	broad.mit.edu	36	11	54892383	54892383	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005275	exon1	c.C448T	p.R150X	.	.	.
OR4C15	81309	broad.mit.edu	36	11	55078835	55078835	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001920	exon1	c.C477A	p.F159L	.	.	.
OR4P4	81300	broad.mit.edu	36	11	55162551	55162551	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004124	exon1	c.A142G	p.T48A	.	.	.
OR4S2	219431	broad.mit.edu	36	11	55175716	55175716	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004059	exon1	c.T761G	p.F254C	.	.	.
OR52H1	390067	broad.mit.edu	36	11	5522405	5522405	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005289	exon1	c.G925A	p.D309N	.	.	.
OR5D13	390142	broad.mit.edu	36	11	55298338	55298338	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001967	exon1	c.G849A	p.A283A	.	.	.
OR5D14	219436	broad.mit.edu	36	11	55319875	55319875	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004735	exon1	c.G268T	p.A90S	.	.	.
OR5D14	219436	broad.mit.edu	36	11	55320210	55320210	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004735	exon1	c.T603G	p.L201L	.	.	.
OR5I1	10798	broad.mit.edu	36	11	55460303	55460303	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006637	exon1	c.G150A	p.L50L	.	.	.
OR5I1	10798	broad.mit.edu	36	11	55460437	55460437	+	Silent	SNP	T	G	G	rs17597625	by-cluster,by-frequency,by-hapmap	TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006637	exon1	c.A16C	p.R6R	.	.	.
OR5F1	338674	broad.mit.edu	36	11	55517925	55517925	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003697	exon1	c.C753A	p.F251L	.	.	.
OR5F1	338674	broad.mit.edu	36	11	55518092	55518092	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003697	exon1	c.G586T	p.E196X	.	.	.
OR5F1	338674	broad.mit.edu	36	11	55518174	55518174	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003697	exon1	c.C504A	p.F168L	.	.	.
OR5F1	338674	broad.mit.edu	36	11	55518354	55518354	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003697	exon1	c.G324A	p.A108A	.	.	.
OR5AS1	219447	broad.mit.edu	36	11	55555401	55555401	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001921	exon1	c.T931C	p.S311P	.	.	.
OR8K5	219453	broad.mit.edu	36	11	55683690	55683690	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004058	exon1	c.A680G	p.Q227R	.	.	.
OR5T1	390155	broad.mit.edu	36	11	55800068	55800068	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004745	exon1	c.C378A	p.L126L	.	.	.
OR8H1	219469	broad.mit.edu	36	11	55814749	55814749	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005199	exon1	c.C366T	p.Y122Y	.	.	.
TRIM6-TRIM34	445372	broad.mit.edu	36	11	5583288	5583288	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001003818	exon4	c.A749G	p.D250G	.	.	.
OR5R1	219479	broad.mit.edu	36	11	55942069	55942069	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004744	exon1	c.T216C	p.C72C	.	.	.
OR5M8	219484	broad.mit.edu	36	11	56014781	56014781	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005282	exon1	c.T642C	p.C214C	.	.	.
OR5AP2	338675	broad.mit.edu	36	11	56166058	56166058	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002925	exon1	c.G434T	p.R145I	.	.	.
OR5AR1	219493	broad.mit.edu	36	11	56188268	56188268	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004730	exon1	c.C531A	p.F177L	.	.	.
OR9G4	283189	broad.mit.edu	36	11	56267233	56267233	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005284	exon1	c.G631A	p.E211K	.	.	.
TRIM22	10346	broad.mit.edu	36	11	5687374	5687374	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199573	exon8	c.C1405T	p.R469C	.	.	.
SERPING1	710	broad.mit.edu	36	11	57124342	57124342	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000062	exon3	c.G466A	p.A156T	.	.	.
OR52N1	79473	broad.mit.edu	36	11	5765692	5765692	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001913	exon1	c.C931A	p.L311I	.	.	.
CNTF	1270	broad.mit.edu	36	11	58146883	58146883	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000614	exon1	c.C82T	p.R28C	.	.	.
GLYAT	10249	broad.mit.edu	36	11	58233825	58233825	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201648	exon6	c.T881C	p.V294A	.	.	.
FAM111B	374393	broad.mit.edu	36	11	58649355	58649355	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142703	exon3	c.G1119A	p.P373P	.	.	.
FAM111B	374393	broad.mit.edu	36	11	58650059	58650059	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142703	exon3	c.C1823T	p.T608M	.	.	.
OR4D10	390197	broad.mit.edu	36	11	59001825	59001825	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004705	exon1	c.C347T	p.S116L	.	.	.
OSBP	5007	broad.mit.edu	36	11	59124873	59124873	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002556	exon6	c.G1174A	p.E392K	.	.	.
OR56A3	390083	broad.mit.edu	36	11	5925835	5925835	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001003443	exon1	c.C683T	p.A228V	.	.	.
OR52L1	338751	broad.mit.edu	36	11	5964251	5964251	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005173	exon1	c.C486T	p.I162I	.	.	.
MS4A1	931	broad.mit.edu	36	11	59991090	59991090	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021950	exon6	c.C656T	p.T219M	.	.	.
ZP1	22917	broad.mit.edu	36	11	60397222	60397222	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207341	exon7	c.G1124A	p.R375H	.	.	.
TMEM132A	54972	broad.mit.edu	36	11	60456095	60456095	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017870	exon7	c.G1279C	p.V427L	.	.	.
VPS37C	55048	broad.mit.edu	36	11	60662858	60662858	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017966	exon2	c.A20C	p.K7T	.	.	.
OR52B2	255725	broad.mit.edu	36	11	6147675	6147675	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004052	exon1	c.G458A	p.R153Q	.	.	.
INCENP	3619	broad.mit.edu	36	11	61653940	61653940	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040694	exon4	c.G365A	p.R122Q	.	.	.
FAM160A2	84067	broad.mit.edu	36	11	6201984	6201984	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032127	exon3	c.G209A	p.R70H	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62043789	62043789	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001620	exon5	c.C14676T	p.F4892F	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62050666	62050666	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001620	exon5	c.C7799A	p.S2600Y	.	.	.
CNGA4	1262	broad.mit.edu	36	11	6217209	6217209	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037329	exon2	c.G82A	p.D28N	.	.	.
NXF1	10482	broad.mit.edu	36	11	62320614	62320614	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006362	exon14	c.T1180C	p.Y394H	.	.	.
STX5	6811	broad.mit.edu	36	11	62331672	62331672	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003164	exon11	c.G913A	p.D305N	.	.	.
WDR74	54663	broad.mit.edu	36	11	62360027	62360027	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018093	exon5	c.G351T	p.K117N	.	.	.
CCKBR	887	broad.mit.edu	36	11	6248006	6248006	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176875	exon3	c.T516G	p.A172A	.	.	.
SLC22A25	387601	broad.mit.edu	36	11	62688007	62688007	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199352	exon9	c.C1509A	p.V503V	.	.	.
SLC22A25	387601	broad.mit.edu	36	11	62741426	62741426	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199352	exon4	c.C766T	p.R256X	.	.	.
PRKCDBP	112464	broad.mit.edu	36	11	6297075	6297075	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145040	exon2	c.C680T	p.A227V	.	.	.
SMPD1	6609	broad.mit.edu	36	11	6371729	6371729	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007593	exon5	c.C1365T	p.F455F	.	.	.
SMPD1	6609	broad.mit.edu	36	11	6372238	6372238	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007593	exon6	c.T1718G	p.F573C	.	.	.
APBB1	322	broad.mit.edu	36	11	6381305	6381305	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164	exon4	c.G943T	p.E315X	.	.	.
SLC22A12	116085	broad.mit.edu	36	11	64116835	64116835	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144585	exon2	c.C411T	p.L137L	.	.	.
NRXN2	9379	broad.mit.edu	36	11	64191337	64191337	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015080	exon9	c.G1759A	p.E587K	.	.	.
NAALADL1	10004	broad.mit.edu	36	11	64581515	64581515	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005468	exon4	c.C507T	p.G169G	.	.	.
ZNHIT2	741	broad.mit.edu	36	11	64640518	64640518	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014205	exon1	c.G1184T	p.R395I	.	.	.
SF3B2	10992	broad.mit.edu	36	11	65585744	65585744	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006842	exon15	c.C1791T	p.F597F	.	.	.
SF3B2	10992	broad.mit.edu	36	11	65585988	65585988	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006842	exon16	c.A1920G	p.G640G	.	.	.
NPAS4	266743	broad.mit.edu	36	11	65946805	65946805	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178864	exon4	c.G515A	p.R172Q	.	.	.
BBS1	582	broad.mit.edu	36	11	66054955	66054955	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024649	exon15	c.C1488T	p.G496G	.	.	.
SPTBN2	6712	broad.mit.edu	36	11	66210480	66210480	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006946	exon36	c.G6904A	p.D2302N	.	.	.
SSH3	54961	broad.mit.edu	36	11	66831974	66831974	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017857	exon8	c.C873A	p.V291V	.	.	.
OR6A2	8590	broad.mit.edu	36	11	6773137	6773137	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003696	exon1	c.C379T	p.R127C	.	.	.
PPP6R3	55291	broad.mit.edu	36	11	68061931	68061931	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164164	exon4	c.T223C	p.Y75H	.	.	.
MTL5	9633	broad.mit.edu	36	11	68266385	68266385	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039656	exon5	c.A805C	p.K269Q	.	.	.
OR2D2	120776	broad.mit.edu	36	11	6869496	6869496	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003700	exon1	c.C812T	p.S271L	.	.	.
OR2D2	120776	broad.mit.edu	36	11	6870302	6870302	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003700	exon1	c.A6G	p.R2R	.	.	.
ZNF215	7762	broad.mit.edu	36	11	6933609	6933609	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013250	exon7	c.G825A	p.R275R	.	.	.
NLRP14	338323	broad.mit.edu	36	11	7016420	7016420	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176822	exon2	c.C27A	p.F9L	.	.	.
NUMA1	4926	broad.mit.edu	36	11	71407133	71407133	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006185	exon11	c.C817T	p.L273L	.	.	.
ARHGEF17	9828	broad.mit.edu	36	11	72744267	72744267	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014786	exon4	c.C3495T	p.I1165I	.	.	.
PAAF1	80227	broad.mit.edu	36	11	73276114	73276114	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025155	exon3	c.A156C	p.T52T	.	.	.
DNAJB13	374407	broad.mit.edu	36	11	73348323	73348323	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153614	exon3	c.C309A	p.F103L	.	.	.
XRRA1	143570	broad.mit.edu	36	11	74240719	74240719	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182969	exon13	c.C1203T	p.F401F	.	.	.
SERPINH1	871	broad.mit.edu	36	11	74957745	74957745	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001235	exon4	c.G835A	p.E279K	.	.	.
C11orf30	56946	broad.mit.edu	36	11	75835683	75835683	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020193	exon2	c.G53T	p.R18I	.	.	.
C11orf30	56946	broad.mit.edu	36	11	75934772	75934772	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020193	exon20	c.C3557A	p.S1186X	.	.	.
CAPN5	726	broad.mit.edu	36	11	76503048	76503048	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004055	exon5	c.G619A	p.D207N	.	.	.
GDPD4	220032	broad.mit.edu	36	11	76617850	76617850	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182833	exon14	c.T1465G	p.F489V	.	.	.
GDPD4	220032	broad.mit.edu	36	11	76660006	76660006	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182833	exon5	c.A288G	p.V96V	.	.	.
OVCH2	341277	broad.mit.edu	36	11	7673450	7673450	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198185	exon12	c.C1209T	p.F403F	.	.	.
KCTD21	283219	broad.mit.edu	36	11	77563171	77563171	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029859	exon2	c.C78T	p.D26D	.	.	.
NARS2	79731	broad.mit.edu	36	11	77825495	77825495	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024678	exon14	c.C1303T	p.R435C	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78059065	78059065	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098816	exon32	c.C5973T	p.D1991D	.	.	.
OR10A6	390093	broad.mit.edu	36	11	7906076	7906076	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004461	exon1	c.C710T	p.A237V	.	.	.
OR10A6	390093	broad.mit.edu	36	11	7906725	7906725	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004461	exon1	c.C61T	p.P21S	.	.	.
OR10A3	26496	broad.mit.edu	36	11	7917366	7917366	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001003745	exon1	c.C278A	p.S93Y	.	.	.
C11orf82	220042	broad.mit.edu	36	11	82303450	82303450	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145018	exon3	c.C22A	p.L8I	.	.	.
PCF11	51585	broad.mit.edu	36	11	82557323	82557323	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015885	exon8	c.G2298A	p.T766T	.	.	.
DLG2	1740	broad.mit.edu	36	11	83222454	83222454	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142700	exon9	c.C949T	p.R317C	.	.	.
DLG2	1740	broad.mit.edu	36	11	83369270	83369270	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142700	exon5	c.A515T	p.Y172F	.	.	.
SYTL2	54843	broad.mit.edu	36	11	85115069	85115069	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206927	exon1	c.A79G	p.N27D	.	.	.
PRSS23	11098	broad.mit.edu	36	11	86197211	86197211	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007173	exon2	c.G878A	p.R293H	.	.	.
ST5	6764	broad.mit.edu	36	11	8673655	8673655	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005418	exon22	c.G3310A	p.V1104M	.	.	.
CTSC	1075	broad.mit.edu	36	11	87685364	87685364	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001814	exon3	c.G325T	p.E109X	.	.	.
NOX4	50507	broad.mit.edu	36	11	88710273	88710273	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016931	exon16	c.A1505T	p.D502V	.	.	.
FOLH1B	219595	broad.mit.edu	36	11	89048954	89048954	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153696	exon7	c.G418A	p.A140T	.	.	.
FOLH1B	219595	broad.mit.edu	36	11	89071349	89071349	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153696	exon14	c.G1263T	p.K421N	.	.	.
NAALAD2	10003	broad.mit.edu	36	11	89507579	89507579	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005467	exon1	c.C5T	p.A2V	.	.	.
CHORDC1	26973	broad.mit.edu	36	11	89584046	89584046	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012124	exon5	c.G418T	p.E140X	.	.	.
SCUBE2	57758	broad.mit.edu	36	11	9003922	9003922	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020974	exon20	c.C2586T	p.I862I	.	.	.
SCUBE2	57758	broad.mit.edu	36	11	9005554	9005554	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020974	exon19	c.C2463T	p.I821I	.	.	.
FAT3	120114	broad.mit.edu	36	11	91726070	91726070	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008781	exon1	c.G1144A	p.D382N	.	.	.
FAT3	120114	broad.mit.edu	36	11	91726443	91726443	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008781	exon1	c.A1517G	p.Y506C	.	.	.
FAT3	120114	broad.mit.edu	36	11	91727067	91727067	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008781	exon1	c.A2141G	p.D714G	.	.	.
FAT3	120114	broad.mit.edu	36	11	91727245	91727245	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008781	exon1	c.C2319A	p.C773X	.	.	.
FAT3	120114	broad.mit.edu	36	11	92162949	92162949	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008781	exon7	c.C4528T	p.R1510W	.	.	.
FAT3	120114	broad.mit.edu	36	11	92173750	92173750	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008781	exon9	c.C7923T	p.S2641S	.	.	.
FAT3	120114	broad.mit.edu	36	11	92216846	92216846	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008781	exon18	c.A10665G	p.E3555E	.	.	.
FAT3	120114	broad.mit.edu	36	11	92216956	92216956	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008781	exon18	c.A10775G	p.Q3592R	.	.	.
FAT3	120114	broad.mit.edu	36	11	92232119	92232119	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008781	exon20	c.C11641T	p.P3881S	.	.	.
FAT3	120114	broad.mit.edu	36	11	92256114	92256114	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008781	exon23	c.G12844A	p.V4282M	.	.	.
MTNR1B	4544	broad.mit.edu	36	11	92354491	92354491	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005959	exon2	c.T454C	p.Y152H	.	.	.
MTNR1B	4544	broad.mit.edu	36	11	92355004	92355004	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005959	exon2	c.C967A	p.L323I	.	.	.
TAF1D	79101	broad.mit.edu	36	11	93111013	93111013	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024116	exon3	c.G369T	p.K123N	.	.	.
HEPHL1	341208	broad.mit.edu	36	11	93418523	93418523	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098672	exon2	c.G207A	p.R69R	.	.	.
FOLR4	390243	broad.mit.edu	36	11	93680091	93680091	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199206	exon3	c.G461A	p.R154H	.	.	.
MRE11A	4361	broad.mit.edu	36	11	93818642	93818642	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005591	exon16	c.A1849C	p.N617H	.	.	.
MRE11A	4361	broad.mit.edu	36	11	93858823	93858823	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005591	exon4	c.G229A	p.E77K	.	.	.
MRE11A	4361	broad.mit.edu	36	11	93863649	93863649	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005591	exon3	c.G151A	p.E51K	.	.	.
PIWIL4	143689	broad.mit.edu	36	11	93956305	93956305	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152431	exon5	c.A557C	p.K186T	.	.	.
PIWIL4	143689	broad.mit.edu	36	11	93974649	93974649	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152431	exon12	c.G1421A	p.R474Q	.	.	.
IPO7	10527	broad.mit.edu	36	11	9407256	9407256	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006391	exon14	c.G1528T	p.E510X	.	.	.
AMOTL1	154810	broad.mit.edu	36	11	94204310	94204310	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130847	exon6	c.G1603A	p.E535K	.	.	.
AMOTL1	154810	broad.mit.edu	36	11	94232440	94232440	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130847	exon9	c.G2047A	p.D683N	.	.	.
SESN3	143686	broad.mit.edu	36	11	94557277	94557277	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144665	exon6	c.C892A	p.L298I	.	.	.
SESN3	143686	broad.mit.edu	36	11	94558286	94558286	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144665	exon5	c.G544T	p.E182X	.	.	.
CEP57	9702	broad.mit.edu	36	11	95172149	95172149	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014679	exon2	c.C151T	p.R51X	.	.	.
MTMR2	8898	broad.mit.edu	36	11	95208239	95208239	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201278	exon17	c.G1579T	p.E527X	.	.	.
MAML2	84441	broad.mit.edu	36	11	95466310	95466310	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032427	exon2	c.G533T	p.R178I	.	.	.
SWAP70	23075	broad.mit.edu	36	11	9707555	9707555	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015055	exon6	c.G879T	p.K293N	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101064581	101064581	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006828	exon41	c.C6409T	p.R2137X	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101198628	101198628	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006828	exon23	c.A3732C	p.Q1244H	.	.	.
GRIK2	2898	broad.mit.edu	36	6	101953943	101953943	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021956	exon1	c.A69G	p.L23L	.	.	.
GRIK2	2898	broad.mit.edu	36	6	102231298	102231298	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021956	exon4	c.G649A	p.E217K	.	.	.
GRIK2	2898	broad.mit.edu	36	6	102444329	102444329	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021956	exon11	c.A1646G	p.N549S	.	.	.
HACE1	57531	broad.mit.edu	36	6	105331883	105331883	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020771	exon15	c.T1569G	p.P523P	.	.	.
PRDM1	639	broad.mit.edu	36	6	106642953	106642953	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198	exon2	c.C227T	p.S76L	.	.	.
AIM1	202	broad.mit.edu	36	6	107081969	107081969	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001624	exon5	c.T3285G	p.I1095M	.	.	.
GCNT2	2651	broad.mit.edu	36	6	10729661	10729661	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145655	exon2	c.C1017T	p.H339H	.	.	.
LACE1	246269	broad.mit.edu	36	6	108950232	108950232	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145315	exon13	c.G1357A	p.E453K	.	.	.
MAK	4117	broad.mit.edu	36	6	10899895	10899895	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005906	exon9	c.C1315T	p.R439W	.	.	.
ARMC2	84071	broad.mit.edu	36	6	109381123	109381123	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032131	exon13	c.G1791A	p.P597P	.	.	.
CEP57L1	285753	broad.mit.edu	36	6	109588510	109588510	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173830	exon10	c.T1059G	p.S353R	.	.	.
PPIL6	285755	broad.mit.edu	36	6	109864072	109864072	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001111298	exon2	c.C159T	p.S53S	.	.	.
ZBTB24	9841	broad.mit.edu	36	6	109893912	109893912	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014797	exon7	c.A1929C	p.E643D	.	.	.
ZBTB24	9841	broad.mit.edu	36	6	109894022	109894022	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014797	exon7	c.C1819A	p.L607I	.	.	.
ZBTB24	9841	broad.mit.edu	36	6	109894365	109894365	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014797	exon7	c.C1476T	p.C492C	.	.	.
AKD1	221264	broad.mit.edu	36	6	110069500	110069500	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145128	exon10	c.C847T	p.R283X	.	.	.
RPF2	84154	broad.mit.edu	36	6	111453313	111453313	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032194	exon10	c.A756C	p.K252N	.	.	.
REV3L	5980	broad.mit.edu	36	6	111771864	111771864	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002912	exon21	c.C7495T	p.R2499X	.	.	.
REV3L	5980	broad.mit.edu	36	6	111795816	111795816	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002912	exon14	c.C5868T	p.F1956F	.	.	.
REV3L	5980	broad.mit.edu	36	6	111800633	111800633	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002912	exon13	c.G5618A	p.R1873Q	.	.	.
LAMA4	3910	broad.mit.edu	36	6	112567685	112567685	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105207	exon23	c.C3051A	p.I1017I	.	.	.
LAMA4	3910	broad.mit.edu	36	6	112593099	112593099	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105207	exon13	c.A1603G	p.T535A	.	.	.
LAMA4	3910	broad.mit.edu	36	6	112644283	112644283	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105207	exon3	c.G276A	p.L92L	.	.	.
FRK	2444	broad.mit.edu	36	6	116488157	116488157	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002031	exon1	c.T11C	p.I4T	.	.	.
TSPYL4	23270	broad.mit.edu	36	6	116680679	116680679	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021648	exon1	c.C1186T	p.R396X	.	.	.
TSPYL4	23270	broad.mit.edu	36	6	116681140	116681140	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021648	exon1	c.G725A	p.R242H	.	.	.
RWDD1	51389	broad.mit.edu	36	6	117016805	117016805	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007464	exon5	c.G90T	p.K30N	.	.	.
ZUFSP	221302	broad.mit.edu	36	6	117094721	117094721	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145062	exon2	c.G328T	p.D110Y	.	.	.
KPNA5	3841	broad.mit.edu	36	6	117117216	117117216	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002269	exon2	c.A45C	p.K15N	.	.	.
KPNA5	3841	broad.mit.edu	36	6	117129954	117129954	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002269	exon6	c.T515C	p.V172A	.	.	.
ROS1	6098	broad.mit.edu	36	6	117790599	117790599	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002944	exon21	c.A3241C	p.K1081Q	.	.	.
ROS1	6098	broad.mit.edu	36	6	117793476	117793476	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002944	exon19	c.T2934C	p.G978G	.	.	.
ROS1	6098	broad.mit.edu	36	6	117793572	117793572	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002944	exon19	c.T2838C	p.V946V	.	.	.
ROS1	6098	broad.mit.edu	36	6	117813670	117813670	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002944	exon15	c.G2173A	p.D725N	.	.	.
GOPC	57120	broad.mit.edu	36	6	118003075	118003075	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020399	exon4	c.C608T	p.A203V	.	.	.
C6orf204	387119	broad.mit.edu	36	6	118909672	118909672	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178035	exon9	c.A1717C	p.K573Q	.	.	.
ASF1A	25842	broad.mit.edu	36	6	119263680	119263680	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014034	exon1	c.G53A	p.R18Q	.	.	.
HIVEP1	3096	broad.mit.edu	36	6	12229431	12229431	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002114	exon4	c.T1417G	p.L473V	.	.	.
HIVEP1	3096	broad.mit.edu	36	6	12232178	12232178	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002114	exon4	c.C4164T	p.F1388F	HIVEP1,central_nervous_system,brain,Substitution - Missense,0	.	.
HSF2	3298	broad.mit.edu	36	6	122776402	122776402	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004506	exon4	c.C364T	p.R122C	.	.	.
TRMT11	60487	broad.mit.edu	36	6	126361436	126361436	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031712	exon6	c.G435A	p.P145P	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127839046	127839046	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012279	exon6	c.C1818T	p.V606V	.	.	.
THEMIS	387357	broad.mit.edu	36	6	128176461	128176461	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010923	exon4	c.G1018A	p.G340S	.	.	.
PTPRK	5796	broad.mit.edu	36	6	128339773	128339773	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002844	exon26	c.C3831T	p.V1277V	.	.	.
PTPRK	5796	broad.mit.edu	36	6	128346106	128346106	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002844	exon23	c.C3361T	p.R1121W	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129517351	129517351	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079823	exon8	c.T1036C	p.C346R	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129854899	129854899	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079823	exon56	c.C8047A	p.L2683I	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129868071	129868071	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079823	exon60	c.C8569A	p.L2857I	.	.	.
ENPP3	5169	broad.mit.edu	36	6	132000287	132000287	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005021	exon1	c.G70A	p.A24T	.	.	.
ENPP3	5169	broad.mit.edu	36	6	132045951	132045951	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005021	exon12	c.G1076A	p.R359Q	.	.	.
ENPP1	5167	broad.mit.edu	36	6	132232283	132232283	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006208	exon13	c.C1366T	p.R456X	.	.	.
ENPP1	5167	broad.mit.edu	36	6	132247831	132247831	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006208	exon23	c.C2379T	p.V793V	.	.	.
ENPP1	5167	broad.mit.edu	36	6	132253277	132253277	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006208	exon25	c.G2711T	p.R904I	.	.	.
MOXD1	26002	broad.mit.edu	36	6	132691270	132691270	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015529	exon5	c.T820G	p.F274V	.	.	.
STX7	8417	broad.mit.edu	36	6	132838479	132838479	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003569	exon3	c.G101T	p.R34I	.	.	.
TAAR9	134860	broad.mit.edu	36	6	132901488	132901488	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175057	exon1	c.T367G	p.L123V	.	.	.
TAAR6	319100	broad.mit.edu	36	6	132933837	132933837	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175067	exon1	c.G684A	p.A228A	.	.	.
TAAR5	9038	broad.mit.edu	36	6	132951926	132951926	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003967	exon1	c.A593C	p.K198T	.	.	.
TAAR5	9038	broad.mit.edu	36	6	132952512	132952512	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003967	exon1	c.G7A	p.A3T	.	.	.
VNN2	8875	broad.mit.edu	36	6	133114244	133114244	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004665	exon5	c.G933A	p.S311S	.	.	.
VNN2	8875	broad.mit.edu	36	6	133120518	133120518	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004665	exon1	c.G198A	p.K66K	.	.	.
EYA4	2070	broad.mit.edu	36	6	133831479	133831479	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172103	exon10	c.C818T	p.S273L	.	.	.
TBPL1	9519	broad.mit.edu	36	6	134345460	134345460	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004865	exon3	c.T197G	p.I66S	.	.	.
SGK1	6446	broad.mit.edu	36	6	134680256	134680256	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143676	exon1	c.G36T	p.K12N	.	.	.
HBS1L	10767	broad.mit.edu	36	6	135350557	135350557	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145158	exon8	c.A1023G	p.G341G	.	.	.
HBS1L	10767	broad.mit.edu	36	6	135365646	135365646	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145158	exon4	c.G332A	p.R111Q	.	.	.
C6orf114	85411	broad.mit.edu	36	6	13578305	13578305	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033069	exon2	c.G187A	p.E63K	.	.	.
PDE7B	27115	broad.mit.edu	36	6	136310304	136310304	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018945	exon2	c.G31A	p.E11K	.	.	.
BCLAF1	9774	broad.mit.edu	36	6	136639263	136639263	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014739	exon5	c.G1093T	p.G365X	.	.	.
MAP3K5	4217	broad.mit.edu	36	6	136955113	136955113	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005923	exon23	c.C3116A	p.S1039Y	.	.	.
SIRT5	23408	broad.mit.edu	36	6	13720057	13720057	+	Missense_Mutation	SNP	A	C	C	rs34162626	by-cluster,by-frequency,by-1000genomes	TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193267	exon9	c.A860C	p.E287A	.	.	.
IL20RA	53832	broad.mit.edu	36	6	137364815	137364815	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014432	exon7	c.C1235T	p.A412V	.	.	.
REPS1	85021	broad.mit.edu	36	6	139267914	139267914	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031922	exon20	c.C2368T	p.R790X	.	.	.
UTRN	7402	broad.mit.edu	36	6	144896022	144896022	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007124	exon42	c.G6166T	p.E2056X	.	.	.
SHPRH	257218	broad.mit.edu	36	6	146317557	146317557	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173082	exon2	c.A595C	p.K199Q	.	.	.
GRM1	2911	broad.mit.edu	36	6	146393027	146393027	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114329	exon2	c.C681A	p.V227V	.	.	.
SASH1	23328	broad.mit.edu	36	6	148888151	148888151	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015278	exon11	c.C1241T	p.T414M	.	.	.
TAB2	23118	broad.mit.edu	36	6	149772513	149772513	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015093	exon9	c.C2047T	p.R683C	.	.	.
LATS1	9113	broad.mit.edu	36	6	150024781	150024781	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004690	exon8	c.T3170C	p.V1057A	.	.	.
LATS1	9113	broad.mit.edu	36	6	150043066	150043066	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004690	exon5	c.G2231A	p.R744Q	.	.	.
LATS1	9113	broad.mit.edu	36	6	150045995	150045995	+	Missense_Mutation	SNP	G	T	T	rs35163691	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004690	exon4	c.C1923A	p.F641L	.	.	.
ULBP2	80328	broad.mit.edu	36	6	150309318	150309318	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025217	exon3	c.G467T	p.R156I	.	.	.
IYD	389434	broad.mit.edu	36	6	150731975	150731975	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164695	exon1	c.G115A	p.E39K	.	.	.
MTHFD1L	25902	broad.mit.edu	36	6	151307384	151307384	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015440	exon14	c.G1510T	p.D504Y	.	.	.
C6orf211	79624	broad.mit.edu	36	6	151831641	151831641	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024573	exon5	c.T1029A	p.C343X	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151978491	151978491	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025059	exon10	c.A1931C	p.E644A	.	.	.
ESR1	2099	broad.mit.edu	36	6	152307007	152307007	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122740	exon5	c.G767A	p.R256Q	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152511044	152511044	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015293	exon52	c.C8377T	p.R2793W	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152542996	152542996	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015293	exon44	c.C7000A	p.L2334I	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152673563	152673563	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015293	exon3	c.C421T	p.R141X	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152673689	152673689	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015293	exon3	c.G295T	p.E99X	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152693605	152693605	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033071	exon77	c.C13695T	p.V4565V	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152694567	152694567	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033071	exon77	c.G12733T	p.E4245X	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152710003	152710003	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033071	exon72	c.G11749A	p.D3917N	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152748611	152748611	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033071	exon55	c.C8564T	p.A2855V	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152772035	152772035	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033071	exon44	c.A6422C	p.K2141T	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152782535	152782535	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033071	exon40	c.G5304C	p.Q1768H	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152810317	152810317	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033071	exon29	c.C3659T	p.S1220F	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152813926	152813926	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033071	exon26	c.G3156T	p.E1052D	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152821698	152821698	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033071	exon22	c.G2476A	p.E826K	.	.	.
RBM16	22828	broad.mit.edu	36	6	155157934	155157934	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014892	exon6	c.C575T	p.A192V	.	.	.
RBM16	22828	broad.mit.edu	36	6	155196057	155196057	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014892	exon20	c.A3652C	p.N1218H	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155615779	155615779	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012454	exon23	c.G4125A	p.S1375S	.	.	.
NOX3	50508	broad.mit.edu	36	6	155759772	155759772	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015718	exon13	c.T1597C	p.F533L	.	.	.
NOX3	50508	broad.mit.edu	36	6	155817932	155817932	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015718	exon2	c.T72G	p.F24L	.	.	.
TULP4	56995	broad.mit.edu	36	6	158820900	158820900	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007466	exon7	c.G1156A	p.A386T	.	.	.
TAGAP	117289	broad.mit.edu	36	6	159377665	159377665	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_054114	exon10	c.T1378G	p.F460V	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159564556	159564556	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032532	exon7	c.G775A	p.E259K	.	.	.
SOD2	6648	broad.mit.edu	36	6	160029262	160029262	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000636	exon3	c.G229A	p.D77N	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160387585	160387585	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000876	exon15	c.T1969G	p.Y657D	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160400083	160400083	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000876	exon22	c.C3054A	p.F1018L	.	.	.
LPA	4018	broad.mit.edu	36	6	160930675	160930675	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005577	exon25	c.C3847T	p.R1283X	.	.	.
LPA	4018	broad.mit.edu	36	6	160947549	160947549	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005577	exon18	c.C2735T	p.A912V	.	.	.
PLG	5340	broad.mit.edu	36	6	161054072	161054072	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000301	exon5	c.G472A	p.D158N	.	.	.
GMPR	2766	broad.mit.edu	36	6	16362903	16362903	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006877	exon4	c.C423T	p.F141F	.	.	.
GMPR	2766	broad.mit.edu	36	6	16403385	16403385	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006877	exon9	c.G1027A	p.V343M	.	.	.
SFT2D1	113402	broad.mit.edu	36	6	166663656	166663656	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145169	exon2	c.G133A	p.V45I	.	.	.
RPS6KA2	6196	broad.mit.edu	36	6	166756886	166756886	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021135	exon17	c.C1591T	p.R531X	.	.	.
RPS6KA2	6196	broad.mit.edu	36	6	166793019	166793019	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021135	exon12	c.G983A	p.R328Q	.	.	.
FGFR1OP	11116	broad.mit.edu	36	6	167355976	167355976	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194429	exon7	c.A609G	p.E203E	.	.	.
SMOC2	64094	broad.mit.edu	36	6	168653608	168653608	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166412	exon2	c.C249T	p.N83N	.	.	.
C6orf70	55780	broad.mit.edu	36	6	169918084	169918084	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018341	exon15	c.G1518A	p.E506E	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17889001	17889001	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022113	exon31	c.A3785G	p.H1262R	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17934278	17934278	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022113	exon15	c.G1589A	p.R530Q	.	.	.
DEK	7913	broad.mit.edu	36	6	18364038	18364038	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003472	exon6	c.G476A	p.S159N	.	.	.
MBOAT1	154141	broad.mit.edu	36	6	20226712	20226712	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080480	exon9	c.G946A	p.G316R	.	.	.
PRL	5617	broad.mit.edu	36	6	22402617	22402617	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000948	exon2	c.C204T	p.F68F	.	.	.
ALDH5A1	7915	broad.mit.edu	36	6	24610738	24610738	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170740	exon2	c.T363G	p.S121R	.	.	.
TDP2	51567	broad.mit.edu	36	6	24766921	24766921	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016614	exon3	c.A272C	p.E91A	.	.	.
LRRC16A	55604	broad.mit.edu	36	6	25708594	25708594	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017640	exon33	c.C3193T	p.R1065W	.	.	.
SCGN	10590	broad.mit.edu	36	6	25761618	25761618	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006998	exon2	c.G112A	p.D38N	.	.	.
SCGN	10590	broad.mit.edu	36	6	25777725	25777725	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006998	exon5	c.G344A	p.R115H	.	.	.
SCGN	10590	broad.mit.edu	36	6	25809452	25809452	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006998	exon11	c.G741T	p.E247D	.	.	.
SLC17A3	10786	broad.mit.edu	36	6	25957603	25957603	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098486	exon11	c.T1340C	p.V447A	.	.	.
SLC17A2	10246	broad.mit.edu	36	6	26024041	26024041	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005835	exon9	c.C965T	p.A322V	.	.	.
SLC17A2	10246	broad.mit.edu	36	6	26025037	26025037	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005835	exon8	c.G785A	p.R262Q	.	.	.
BTN3A3	10384	broad.mit.edu	36	6	26554018	26554018	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006994	exon5	c.G541A	p.D181N	.	.	.
BTN1A1	696	broad.mit.edu	36	6	26613143	26613143	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001732	exon3	c.G439A	p.D147N	.	.	.
ABT1	29777	broad.mit.edu	36	6	26706171	26706171	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013375	exon2	c.A292C	p.K98Q	.	.	.
FKSG83	83954	broad.mit.edu	36	6	27401356	27401356	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032030	exon1	c.A316G	p.T106A	.	.	.
ZNF184	7738	broad.mit.edu	36	6	27528063	27528063	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007149	exon6	c.C1254T	p.Y418Y	.	.	.
ZNF184	7738	broad.mit.edu	36	6	27528171	27528171	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007149	exon6	c.A1146C	p.K382N	.	.	.
ZNF165	7718	broad.mit.edu	36	6	28164944	28164944	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003447	exon4	c.G1175A	p.R392Q	.	.	.
PGBD1	84547	broad.mit.edu	36	6	28361383	28361383	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184743	exon3	c.G473A	p.S158N	.	.	.
SERPINB9	5272	broad.mit.edu	36	6	2841377	2841377	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004155	exon3	c.C215T	p.S72L	.	.	.
SCAND3	114821	broad.mit.edu	36	6	28651815	28651815	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052923	exon3	c.G646T	p.E216X	.	.	.
OR2W1	26692	broad.mit.edu	36	6	29120402	29120402	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030903	exon1	c.T530G	p.F177C	.	.	.
OR2W1	26692	broad.mit.edu	36	6	29120602	29120602	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030903	exon1	c.T330C	p.V110V	.	.	.
OR12D2	26529	broad.mit.edu	36	6	29472480	29472480	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013936	exon1	c.G25A	p.E9K	.	.	.
OR2H1	26716	broad.mit.edu	36	6	29537986	29537986	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030883	exon3	c.C461T	p.S154L	.	.	.
MOG	4340	broad.mit.edu	36	6	29735408	29735408	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008229	exon2	c.A422C	p.E141A	.	.	.
TRIM10	10107	broad.mit.edu	36	6	30234344	30234344	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006778	exon3	c.C567T	p.F189F	.	.	.
TRIM26	7726	broad.mit.edu	36	6	30272350	30272350	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003449	exon6	c.C687T	p.V229V	.	.	.
ABCF1	23	broad.mit.edu	36	6	30661347	30661347	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025091	exon16	c.C1509T	p.I503I	.	.	.
DHX16	8449	broad.mit.edu	36	6	30746200	30746200	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003587	exon4	c.G632A	p.R211H	.	.	.
MDC1	9656	broad.mit.edu	36	6	30783757	30783757	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014641	exon8	c.G2578T	p.E860X	.	.	.
PSORS1C2	170680	broad.mit.edu	36	6	31213988	31213988	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014069	exon2	c.C130T	p.P44S	.	.	.
CCHCR1	54535	broad.mit.edu	36	6	31226866	31226866	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105563	exon5	c.A706G	p.T236A	.	.	.
ATP6V1G2	534	broad.mit.edu	36	6	31621906	31621906	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138282	exon2	c.C19T	p.R7C	.	.	.
C2	717	broad.mit.edu	36	6	32009992	32009992	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145903	exon4	c.G390A	p.S130S	.	.	.
STK19	8859	broad.mit.edu	36	6	32056529	32056529	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004197	exon7	c.G1021A	p.D341N	.	.	.
TNXB	7148	broad.mit.edu	36	6	32125203	32125203	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019105	exon28	c.C9573T	p.F3191F	.	.	.
TNXB	7148	broad.mit.edu	36	6	32164735	32164735	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019105	exon6	c.C2584T	p.R862C	.	.	.
C6orf10	10665	broad.mit.edu	36	6	32415392	32415392	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006781	exon10	c.T351C	p.G117G	.	.	.
C6orf10	10665	broad.mit.edu	36	6	32425537	32425537	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006781	exon9	c.C307A	p.L103I	.	.	.
TAP1	6890	broad.mit.edu	36	6	32926191	32926191	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000593	exon5	c.C1312T	p.R438X	.	.	.
HLA-DMA	3108	broad.mit.edu	36	6	33026397	33026397	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006120	exon2	c.G250A	p.E84K	.	.	.
VPS52	6293	broad.mit.edu	36	6	33342329	33342329	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022553	exon12	c.A1264G	p.T422A	.	.	.
VPS52	6293	broad.mit.edu	36	6	33344842	33344842	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022553	exon6	c.C475T	p.R159X	.	.	.
ITPR3	3710	broad.mit.edu	36	6	33753271	33753271	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002224	exon28	c.C3535T	p.L1179L	.	.	.
UHRF1BP1	54887	broad.mit.edu	36	6	34939916	34939916	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017754	exon15	c.T3375C	p.S1125S	.	.	.
SCUBE3	222663	broad.mit.edu	36	6	35315590	35315590	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152753	exon8	c.A913C	p.K305Q	.	.	.
SCUBE3	222663	broad.mit.edu	36	6	35318931	35318931	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152753	exon15	c.G1849A	p.E617K	.	.	.
SRPK1	6732	broad.mit.edu	36	6	35911094	35911094	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003137	exon16	c.G1933A	p.A645T	.	.	.
MAPK14	1432	broad.mit.edu	36	6	36148725	36148725	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001315	exon4	c.C403A	p.L135I	.	.	.
C6orf222	389384	broad.mit.edu	36	6	36405964	36405964	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010903	exon2	c.A482G	p.H161R	.	.	.
TMEM217	221468	broad.mit.edu	36	6	37294600	37294600	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145316	exon2	c.G185T	p.C62F	.	.	.
MDGA1	266727	broad.mit.edu	36	6	37730631	37730631	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153487	exon5	c.A635G	p.Y212C	.	.	.
ZFAND3	60685	broad.mit.edu	36	6	38192377	38192377	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021943	exon5	c.A413T	p.E138V	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38921363	38921363	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001371	exon34	c.C4230T	p.I1410I	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38928512	38928512	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001371	exon38	c.G4880A	p.R1627H	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38939745	38939745	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001371	exon43	c.G5778T	p.K1926N	.	.	.
C6orf146	222826	broad.mit.edu	36	6	4014008	4014008	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173563	exon7	c.T1448C	p.F483S	.	.	.
TREM1	54210	broad.mit.edu	36	6	41358134	41358134	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018643	exon2	c.G383A	p.R128H	.	.	.
USP49	25862	broad.mit.edu	36	6	41881636	41881636	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018561	exon4	c.T1064C	p.I355T	.	.	.
KIAA0240	23506	broad.mit.edu	36	6	42904576	42904576	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015349	exon5	c.C527T	p.S176L	.	.	.
CUL9	23113	broad.mit.edu	36	6	43262132	43262132	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015089	exon4	c.C1212T	p.G404G	.	.	.
ZNF318	24149	broad.mit.edu	36	6	43424329	43424329	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014345	exon6	c.G2783A	p.R928H	.	.	.
MAD2L1BP	9587	broad.mit.edu	36	6	43712118	43712118	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001003690	exon3	c.C165T	p.S55S	.	.	.
TMEM63B	55362	broad.mit.edu	36	6	44230156	44230156	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018426	exon23	c.C2303A	p.S768Y	.	.	.
SLC29A1	2030	broad.mit.edu	36	6	44305304	44305304	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001078174	exon4	c.T112C	p.Y38H	.	.	.
ENPP4	22875	broad.mit.edu	36	6	46215576	46215576	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014936	exon2	c.G297T	p.K99N	.	.	.
ENPP4	22875	broad.mit.edu	36	6	46215937	46215937	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014936	exon2	c.A658G	p.R220G	.	.	.
ENPP5	59084	broad.mit.edu	36	6	46243741	46243741	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021572	exon2	c.A218G	p.Y73C	.	.	.
TDRD6	221400	broad.mit.edu	36	6	46764830	46764830	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010870	exon1	c.C1006T	p.R336W	.	.	.
TDRD6	221400	broad.mit.edu	36	6	46766267	46766267	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010870	exon1	c.C2443T	p.P815S	.	.	.
TDRD6	221400	broad.mit.edu	36	6	46768355	46768355	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010870	exon1	c.C4531A	p.L1511I	.	.	.
TDRD6	221400	broad.mit.edu	36	6	46768680	46768680	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010870	exon1	c.C4856T	p.A1619V	.	.	.
TDRD6	221400	broad.mit.edu	36	6	46769255	46769255	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010870	exon1	c.T5431C	p.Y1811H	.	.	.
PLA2G7	7941	broad.mit.edu	36	6	46786280	46786280	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168357	exon8	c.G738T	p.K246N	.	.	.
GPR116	221395	broad.mit.edu	36	6	46934367	46934367	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098518	exon17	c.C3232T	p.R1078C	.	.	.
GPR116	221395	broad.mit.edu	36	6	46934466	46934466	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098518	exon17	c.C3133T	p.R1045W	.	.	.
GPR110	266977	broad.mit.edu	36	6	47085879	47085879	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153840	exon11	c.G1251A	p.P417P	.	.	.
CD2AP	23607	broad.mit.edu	36	6	47652780	47652780	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012120	exon8	c.A885C	p.I295I	.	.	.
C6orf138	442213	broad.mit.edu	36	6	47954774	47954774	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013732	exon3	c.C1765T	p.R589X	.	.	.
C6orf138	442213	broad.mit.edu	36	6	47955043	47955043	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013732	exon3	c.C1496T	p.S499L	.	.	.
C6orf138	442213	broad.mit.edu	36	6	48084701	48084701	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207499	exon2	c.C535T	p.L179F	.	.	.
CDYL	9425	broad.mit.edu	36	6	4880845	4880845	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143970	exon3	c.C393T	p.D131D	.	.	.
CDYL	9425	broad.mit.edu	36	6	4888785	4888785	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143970	exon5	c.C732T	p.F244F	.	.	.
RPP40	10799	broad.mit.edu	36	6	4940408	4940408	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006638	exon8	c.G995A	p.R332Q	.	.	.
DEFB113	245927	broad.mit.edu	36	6	50044410	50044410	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037729	exon2	c.C188T	p.A63V	.	.	.
DEFB113	245927	broad.mit.edu	36	6	50044483	50044483	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037729	exon2	c.C115T	p.R39C	.	.	.
TFAP2B	7021	broad.mit.edu	36	6	50915949	50915949	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003221	exon6	c.G1062T	p.K354N	.	.	.
EXOC2	55770	broad.mit.edu	36	6	509562	509562	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018303	exon15	c.C1650T	p.H550H	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51632712	51632712	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138694	exon61	c.G10171T	p.E3391X	.	.	.
PKHD1	5314	broad.mit.edu	36	6	52008385	52008385	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170724	exon28	c.G3191T	p.S1064I	.	.	.
PKHD1	5314	broad.mit.edu	36	6	52032738	52032738	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170724	exon15	c.G1180A	p.A394T	.	.	.
PKHD1	5314	broad.mit.edu	36	6	52044917	52044917	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170724	exon8	c.A557C	p.K186T	.	.	.
GSTA3	2940	broad.mit.edu	36	6	52869578	52869578	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000847	exon7	c.G654T	p.K218N	.	.	.
GSTA3	2940	broad.mit.edu	36	6	52872768	52872768	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000847	exon5	c.C337T	p.R113X	.	.	.
FARS2	10667	broad.mit.edu	36	6	5376350	5376350	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006567	exon4	c.G850T	p.E284X	.	.	.
TINAG	27283	broad.mit.edu	36	6	54362583	54362583	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014464	exon11	c.G1332A	p.E444E	.	.	.
HCRTR2	3062	broad.mit.edu	36	6	55253173	55253173	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001526	exon6	c.G1077A	p.A359A	.	.	.
COL21A1	81578	broad.mit.edu	36	6	56141052	56141052	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030820	exon6	c.G1029A	p.T343T	.	.	.
COL21A1	81578	broad.mit.edu	36	6	56143789	56143789	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030820	exon4	c.G737T	p.R246I	.	.	.
COL21A1	81578	broad.mit.edu	36	6	56152870	56152870	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030820	exon3	c.G105A	p.P35P	.	.	.
DST	667	broad.mit.edu	36	6	56462292	56462292	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015548	exon67	c.C12963T	p.I4321I	.	.	.
DST	667	broad.mit.edu	36	6	56466910	56466910	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015548	exon64	c.G12382A	p.E4128K	.	.	.
DST	667	broad.mit.edu	36	6	56525375	56525375	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015548	exon42	c.C8305T	p.R2769X	.	.	.
DST	667	broad.mit.edu	36	6	56564968	56564968	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015548	exon30	c.A5005C	p.N1669H	.	.	.
DST	667	broad.mit.edu	36	6	56613343	56613343	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015548	exon4	c.G436A	p.E146K	.	.	.
ZNF451	26036	broad.mit.edu	36	6	57120189	57120189	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015555	exon10	c.G1347T	p.M449I	.	.	.
RAB23	51715	broad.mit.edu	36	6	57183010	57183010	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016277	exon2	c.G128A	p.G43E	.	.	.
PRIM2	5558	broad.mit.edu	36	6	57293230	57293230	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000947	exon3	c.A171C	p.E57D	.	.	.
F13A1	2162	broad.mit.edu	36	6	6167357	6167357	+	Missense_Mutation	SNP	G	T	T	rs35516060	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000129	exon8	c.C1020A	p.F340L	.	.	.
PHF3	23469	broad.mit.edu	36	6	64452144	64452144	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015153	exon3	c.T562C	p.S188P	.	.	.
PHF3	23469	broad.mit.edu	36	6	64479672	64479672	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015153	exon15	c.G4229T	p.R1410I	.	.	.
LY86	9450	broad.mit.edu	36	6	6571552	6571552	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004271	exon3	c.A251G	p.D84G	.	.	.
EYS	346007	broad.mit.edu	36	6	66101600	66101600	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198283	exon10	c.G1760T	p.R587I	.	.	.
BAI3	577	broad.mit.edu	36	6	70005766	70005766	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001704	exon20	c.T2741G	p.L914R	.	.	.
BAI3	577	broad.mit.edu	36	6	70127764	70127764	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001704	exon29	c.A3878G	p.D1293G	.	.	.
COL9A1	1297	broad.mit.edu	36	6	71007127	71007127	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001851	exon32	c.G2065T	p.E689X	.	.	.
COL9A1	1297	broad.mit.edu	36	6	71060777	71060777	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001851	exon5	c.G510A	p.S170S	.	.	.
COL9A1	1297	broad.mit.edu	36	6	71060934	71060934	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001851	exon5	c.G353A	p.R118Q	.	.	.
OGFRL1	79627	broad.mit.edu	36	6	72068396	72068396	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024576	exon7	c.G1279A	p.E427K	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73057262	73057262	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014989	exon25	c.G3714A	p.A1238A	.	.	.
KCNQ5	56479	broad.mit.edu	36	6	73808385	73808385	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160133	exon3	c.C495T	p.F165F	.	.	.
KCNQ5	56479	broad.mit.edu	36	6	73808449	73808449	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160133	exon3	c.C559T	p.R187X	.	.	.
CD109	135228	broad.mit.edu	36	6	74577569	74577569	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133493	exon28	c.G3680T	p.R1227L	.	.	.
DSP	1832	broad.mit.edu	36	6	7507915	7507915	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008844	exon5	c.A629G	p.D210G	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75896663	75896663	+	Missense_Mutation	SNP	C	T	T	rs34336755	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004370	exon37	c.G6074A	p.R2025H	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75949890	75949890	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004370	exon10	c.A1487G	p.K496R	.	.	.
TMEM30A	55754	broad.mit.edu	36	6	76025339	76025339	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018247	exon6	c.T769G	p.F257V	.	.	.
FILIP1	27145	broad.mit.edu	36	6	76129195	76129195	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015687	exon3	c.G435T	p.E145D	.	.	.
SENP6	26054	broad.mit.edu	36	6	76462299	76462299	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015571	exon17	c.C2135A	p.S712Y	.	.	.
MYO6	4646	broad.mit.edu	36	6	76653328	76653328	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004999	exon25	c.A2555C	p.K852T	.	.	.
MYO6	4646	broad.mit.edu	36	6	76680598	76680598	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004999	exon34	c.G3538A	p.D1180N	.	.	.
BMP6	654	broad.mit.edu	36	6	7824328	7824328	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001718	exon5	c.A1227C	p.K409N	.	.	.
PHIP	55023	broad.mit.edu	36	6	79722063	79722063	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017934	exon33	c.T3838G	p.L1280V	.	.	.
PHIP	55023	broad.mit.edu	36	6	79749349	79749349	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017934	exon23	c.A2742C	p.K914N	.	.	.
PHIP	55023	broad.mit.edu	36	6	79783978	79783978	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017934	exon11	c.C1036T	p.R346W	.	.	.
LCA5	167691	broad.mit.edu	36	6	80253898	80253898	+	Missense_Mutation	SNP	C	T	T	rs35415141	by-cluster,by-frequency	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181714	exon9	c.G1636A	p.A546T	.	.	.
DOPEY1	23033	broad.mit.edu	36	6	83905021	83905021	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015018	exon21	c.T4541G	p.F1514C	.	.	.
PRSS35	167681	broad.mit.edu	36	6	84290582	84290582	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170423	exon3	c.A703C	p.K235Q	.	.	.
CYB5R4	51167	broad.mit.edu	36	6	84685858	84685858	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016230	exon7	c.C530A	p.S177Y	.	.	.
KIAA1009	22832	broad.mit.edu	36	6	84928291	84928291	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014895	exon20	c.C2569T	p.R857C	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88025492	88025492	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015021	exon8	c.C5426A	p.S1809Y	.	.	.
RARS2	57038	broad.mit.edu	36	6	88297313	88297313	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020320	exon9	c.T679G	p.F227V	.	.	.
RARS2	57038	broad.mit.edu	36	6	88312072	88312072	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020320	exon7	c.C516T	p.G172G	.	.	.
ORC3	23595	broad.mit.edu	36	6	88382816	88382816	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012381	exon9	c.C939A	p.I313I	.	.	.
GABRR1	2569	broad.mit.edu	36	6	89964587	89964587	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002042	exon5	c.G443A	p.R148Q	.	.	.
MDN1	23195	broad.mit.edu	36	6	90410528	90410528	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014611	exon102	c.C16708T	p.R5570X	.	.	.
MDN1	23195	broad.mit.edu	36	6	90411485	90411485	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014611	exon101	c.C16572A	p.I5524I	.	.	.
MDN1	23195	broad.mit.edu	36	6	90466724	90466724	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014611	exon57	c.G8649T	p.K2883N	.	.	.
MDN1	23195	broad.mit.edu	36	6	90481076	90481076	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014611	exon46	c.T6976G	p.L2326V	.	.	.
MDN1	23195	broad.mit.edu	36	6	90560207	90560207	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014611	exon5	c.G850T	p.E284X	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90633590	90633590	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001137667	exon8	c.G3860A	p.R1287Q	.	.	.
GJA10	84694	broad.mit.edu	36	6	90661315	90661315	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032602	exon1	c.G407T	p.R136M	.	.	.
EPHA7	2045	broad.mit.edu	36	6	94009878	94009878	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004440	exon17	c.G2984A	p.G995D	.	.	.
EPHA7	2045	broad.mit.edu	36	6	94123406	94123406	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004440	exon5	c.G1074A	p.G358G	.	.	.
EPHA7	2045	broad.mit.edu	36	6	94177409	94177409	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004440	exon3	c.A363G	p.E121E	.	.	.
NDUFAF4	29078	broad.mit.edu	36	6	97445745	97445745	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014165	exon3	c.G484A	p.E162K	.	.	.
KLHL32	114792	broad.mit.edu	36	6	97639804	97639804	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052904	exon6	c.G493A	p.D165N	.	.	.
C6orf167	253714	broad.mit.edu	36	6	97801241	97801241	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198468	exon11	c.A1166C	p.K389T	.	.	.
MYH13	8735	broad.mit.edu	36	17	10150603	10150603	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003802	exon37	c.G5364T	p.K1788N	.	.	.
MYH13	8735	broad.mit.edu	36	17	10162852	10162852	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003802	exon27	c.G3718A	p.E1240K	.	.	.
MYH13	8735	broad.mit.edu	36	17	10176198	10176198	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003802	exon20	c.G2241T	p.E747D	.	.	.
MYH13	8735	broad.mit.edu	36	17	10198796	10198796	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003802	exon11	c.G931A	p.D311N	.	.	.
MYH13	8735	broad.mit.edu	36	17	10199176	10199176	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003802	exon9	c.G752A	p.R251Q	.	.	.
MYH4	4622	broad.mit.edu	36	17	10310398	10310398	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017533	exon4	c.G265A	p.E89K	.	.	.
MYH2	4620	broad.mit.edu	36	17	10370982	10370982	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100112	exon29	c.A3988C	p.K1330Q	.	.	.
MYH2	4620	broad.mit.edu	36	17	10373930	10373930	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100112	exon23	c.G2884T	p.D962Y	.	.	.
MYH2	4620	broad.mit.edu	36	17	10391830	10391830	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100112	exon3	c.G133A	p.E45K	.	.	.
MYH3	4621	broad.mit.edu	36	17	10474455	10474455	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002470	exon36	c.G5332A	p.A1778T	.	.	.
MYH3	4621	broad.mit.edu	36	17	10476721	10476721	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002470	exon33	c.G4753A	p.E1585K	.	.	.
MYH3	4621	broad.mit.edu	36	17	10488404	10488404	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002470	exon13	c.G1399A	p.E467K	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11495129	11495129	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001372	exon13	c.G2116T	p.E706X	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11612513	11612513	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001372	exon37	c.G7189T	p.E2397X	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11641830	11641830	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001372	exon43	c.C8415T	p.R2805R	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11735867	11735867	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004662	exon4	c.G97A	p.E33K	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11738467	11738467	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004662	exon5	c.C271T	p.R91X	.	.	.
ZNF18	7566	broad.mit.edu	36	17	11822366	11822366	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144680	exon9	c.G1283T	p.R428I	.	.	.
MAP2K4	6416	broad.mit.edu	36	17	11939644	11939644	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003010	exon4	c.G421A	p.E141K	.	.	.
YWHAE	7531	broad.mit.edu	36	17	1215042	1215042	+	Missense_Mutation	SNP	C	A	A	rs11552917	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006761	exon2	c.G125T	p.R42I	.	.	.
TEKT3	64518	broad.mit.edu	36	17	15148166	15148166	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031898	exon9	c.G1285A	p.D429N	.	.	.
ZNF624	57547	broad.mit.edu	36	17	16467948	16467948	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020787	exon6	c.A977G	p.H326R	.	.	.
CCDC144A	9720	broad.mit.edu	36	17	16606476	16606476	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014695	exon14	c.C3791T	p.S1264L	.	.	.
C17orf39	79018	broad.mit.edu	36	17	17898192	17898192	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024052	exon3	c.C525T	p.F175F	.	.	.
MYO15A	51168	broad.mit.edu	36	17	18007334	18007334	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016239	exon58	c.C9664T	p.R3222C	.	.	.
TBC1D28	254272	broad.mit.edu	36	17	18481910	18481910	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039397	exon9	c.C489T	p.F163F	.	.	.
ALDH3A2	224	broad.mit.edu	36	17	19500350	19500350	+	Missense_Mutation	SNP	C	T	T	rs72547562	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000382	exon4	c.C551T	p.T184M	.	.	.
ULK2	9706	broad.mit.edu	36	17	19624504	19624504	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142610	exon25	c.T2789G	p.F930C	.	.	.
SMG6	23293	broad.mit.edu	36	17	2147937	2147937	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170957	exon3	c.T1917C	p.I639I	.	.	.
SPAG5	10615	broad.mit.edu	36	17	23929210	23929210	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006461	exon23	c.G3455A	p.R1152Q	.	.	.
KIAA0100	9703	broad.mit.edu	36	17	23985873	23985873	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014680	exon16	c.C2859T	p.L953L	.	.	.
SUPT6H	6830	broad.mit.edu	36	17	24035740	24035740	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003170	exon18	c.C2239T	p.R747X	.	.	.
NUFIP2	57532	broad.mit.edu	36	17	24638324	24638324	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020772	exon2	c.C814T	p.R272X	.	.	.
SSH2	85464	broad.mit.edu	36	17	25001871	25001871	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033389	exon12	c.C1072T	p.R358W	.	.	.
SLC6A4	6532	broad.mit.edu	36	17	25569988	25569988	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001045	exon4	c.G431A	p.R144Q	.	.	.
SLC6A4	6532	broad.mit.edu	36	17	25573091	25573091	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001045	exon3	c.G12A	p.T4T	.	.	.
CPD	1362	broad.mit.edu	36	17	25813126	25813126	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199775	exon19	c.G2995T	p.G999C	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26195098	26195098	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024857	exon5	c.G2283A	p.K761K	.	.	.
RNF135	84282	broad.mit.edu	36	17	26349893	26349893	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032322	exon5	c.G857A	p.R286H	.	.	.
NF1	4763	broad.mit.edu	36	17	26604107	26604107	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042492	exon31	c.A4136C	p.K1379T	.	.	.
NF1	4763	broad.mit.edu	36	17	26725293	26725293	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000267	exon57	c.C8451T	p.I2817I	.	.	.
RHOT1	55288	broad.mit.edu	36	17	27558152	27558152	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033566	exon17	c.G1527A	p.R509R	.	.	.
PSMD11	5717	broad.mit.edu	36	17	27815221	27815221	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002815	exon4	c.G360T	p.E120D	.	.	.
MYO1D	4642	broad.mit.edu	36	17	28063196	28063196	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015194	exon16	c.C2044T	p.R682X	.	.	.
OR1G1	8390	broad.mit.edu	36	17	2976930	2976930	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003555	exon1	c.C666T	p.F222F	.	.	.
TMEM132E	124842	broad.mit.edu	36	17	29978156	29978156	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207313	exon3	c.C695T	p.P232L	.	.	.
LIG3	3980	broad.mit.edu	36	17	30347767	30347767	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013975	exon11	c.A1805G	p.D602G	.	.	.
RFFL	117584	broad.mit.edu	36	17	30363244	30363244	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017368	exon7	c.T948C	p.C316C	.	.	.
SLFN5	162394	broad.mit.edu	36	17	30609955	30609955	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144975	exon2	c.C133T	p.R45X	.	.	.
SLFN5	162394	broad.mit.edu	36	17	30610360	30610360	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144975	exon2	c.C538T	p.R180W	.	.	.
SLFN11	91607	broad.mit.edu	36	17	30704189	30704189	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001104589	exon6	c.G2005A	p.E669K	.	.	.
SLFN12	55106	broad.mit.edu	36	17	30773641	30773641	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018042	exon2	c.G520A	p.E174K	.	.	.
CCL15	6359	broad.mit.edu	36	17	31337750	31337750	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032962	exon1	c.G49A	p.A17T	.	.	.
GGNBP2	79893	broad.mit.edu	36	17	32009877	32009877	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024835	exon8	c.G935A	p.R312Q	.	.	.
GGNBP2	79893	broad.mit.edu	36	17	32012000	32012000	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024835	exon9	c.G1134T	p.K378N	.	.	.
AATF	26574	broad.mit.edu	36	17	32418029	32418029	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012138	exon5	c.G833A	p.S278N	.	.	.
ACACA	31	broad.mit.edu	36	17	32560499	32560499	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198834	exon47	c.T5849A	p.L1950Q	.	.	.
ACACA	31	broad.mit.edu	36	17	32592855	32592855	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198834	exon42	c.C5302T	p.R1768C	.	.	.
SPATA22	84690	broad.mit.edu	36	17	3299074	3299074	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170696	exon5	c.C320T	p.S107L	.	.	.
GPR179	440435	broad.mit.edu	36	17	33736697	33736697	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004334	exon11	c.C6281T	p.S2094F	.	.	.
CACNB1	782	broad.mit.edu	36	17	34594580	34594580	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000723	exon8	c.T712C	p.S238P	.	.	.
RPL19	6143	broad.mit.edu	36	17	34614415	34614415	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000981	exon6	c.G579A	p.E193E	.	.	.
MED1	5469	broad.mit.edu	36	17	34818032	34818032	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004774	exon17	c.A3968G	p.D1323G	.	.	.
MED1	5469	broad.mit.edu	36	17	34818539	34818539	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004774	exon17	c.G3461A	p.G1154D	.	.	.
CTNS	1497	broad.mit.edu	36	17	3498936	3498936	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004937	exon5	c.C187T	p.R63C	.	.	.
ITGAE	3682	broad.mit.edu	36	17	3579538	3579538	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002208	exon24	c.C2895T	p.F965F	.	.	.
KRT222	125113	broad.mit.edu	36	17	36067247	36067247	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152349	exon5	c.C542A	p.S181Y	.	.	.
TMEM99	147184	broad.mit.edu	36	17	36244848	36244848	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195386	exon3	c.A554C	p.K185T	.	.	.
KRTAP9-2	83899	broad.mit.edu	36	17	36636869	36636869	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031961	exon1	c.G437A	p.R146H	.	.	.
KRT34	3885	broad.mit.edu	36	17	36791494	36791494	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021013	exon2	c.G554A	p.S185N	.	.	.
KRT37	8688	broad.mit.edu	36	17	36833918	36833918	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003770	exon1	c.G384T	p.E128D	.	.	.
KRT36	8689	broad.mit.edu	36	17	36899272	36899272	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003771	exon1	c.G371A	p.R124H	.	.	.
HAP1	9001	broad.mit.edu	36	17	37142518	37142518	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079871	exon2	c.G528T	p.V176V	.	.	.
FKBP10	60681	broad.mit.edu	36	17	37230190	37230190	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021939	exon7	c.C1207T	p.R403X	.	.	.
KLHL10	317719	broad.mit.edu	36	17	37255332	37255332	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152467	exon3	c.G1113A	p.P371P	.	.	.
KLHL11	55175	broad.mit.edu	36	17	37265032	37265032	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018143	exon2	c.T613G	p.C205G	.	.	.
ACLY	47	broad.mit.edu	36	17	37278533	37278533	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198830	exon27	c.G3136A	p.A1046T	.	.	.
STAT5B	6777	broad.mit.edu	36	17	37622783	37622783	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012448	exon11	c.C1301T	p.S434L	.	.	.
IFI35	3430	broad.mit.edu	36	17	38418629	38418629	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005533	exon3	c.G160T	p.G54X	.	.	.
DHX8	1659	broad.mit.edu	36	17	38925627	38925627	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004941	exon6	c.C556T	p.R186X	.	.	.
DHX8	1659	broad.mit.edu	36	17	38926379	38926379	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004941	exon7	c.C904T	p.R302W	.	.	.
DHX8	1659	broad.mit.edu	36	17	38931847	38931847	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004941	exon10	c.T1392C	p.I464I	.	.	.
ZZEF1	23140	broad.mit.edu	36	17	3904131	3904131	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015113	exon34	c.C5403T	p.S1801S	.	.	.
MPP2	4355	broad.mit.edu	36	17	39310789	39310789	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005374	exon13	c.A1571G	p.N524S	.	.	.
MPP2	4355	broad.mit.edu	36	17	39314042	39314042	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005374	exon9	c.C930T	p.C310C	.	.	.
C17orf53	78995	broad.mit.edu	36	17	39581507	39581507	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171251	exon3	c.G810A	p.P270P	.	.	.
SLC4A1	6521	broad.mit.edu	36	17	39690893	39690893	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000342	exon11	c.C1269T	p.F423F	.	.	.
C17orf104	284071	broad.mit.edu	36	17	40100684	40100684	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145080	exon5	c.G1879T	p.D627Y	.	.	.
GJC1	10052	broad.mit.edu	36	17	40238327	40238327	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005497	exon3	c.G385T	p.E129X	.	.	.
FMNL1	752	broad.mit.edu	36	17	40670468	40670468	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005892	exon8	c.T761C	p.V254A	.	.	.
IMP5	162540	broad.mit.edu	36	17	41279225	41279225	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175882	exon1	c.C1173T	p.F391F	.	.	.
MAPT	4137	broad.mit.edu	36	17	41429625	41429625	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016834	exon6	c.C406T	p.R136C	.	.	.
STH	246744	broad.mit.edu	36	17	41432499	41432499	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007532	exon1	c.G17A	p.G6D	.	.	.
C17orf57	124989	broad.mit.edu	36	17	42807058	42807058	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152347	exon12	c.A1099C	p.R367R	.	.	.
MRPL10	124995	broad.mit.edu	36	17	43259044	43259044	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148887	exon5	c.A520C	p.M174L	.	.	.
TTLL6	284076	broad.mit.edu	36	17	44201525	44201525	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130918	exon15	c.G2501T	p.S834I	.	.	.
ZNF652	22834	broad.mit.edu	36	17	44745126	44745126	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145365	exon3	c.G981T	p.K327N	.	.	.
ZNF652	22834	broad.mit.edu	36	17	44750001	44750001	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145365	exon2	c.G86A	p.R29H	.	.	.
PDK2	5164	broad.mit.edu	36	17	45540751	45540751	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002611	exon8	c.G832A	p.A278T	.	.	.
COL1A1	1277	broad.mit.edu	36	17	45621838	45621838	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000088	exon39	c.C2728T	p.R910C	.	.	.
COL1A1	1277	broad.mit.edu	36	17	45630321	45630321	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000088	exon8	c.G630A	p.E210E	.	.	.
COL1A1	1277	broad.mit.edu	36	17	45632165	45632165	+	Silent	SNP	G	T	T	rs72667010	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000088	exon2	c.C246A	p.P82P	.	.	.
NME1-NME2	654364	broad.mit.edu	36	17	46593548	46593548	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000269	exon4	c.C257T	p.T86M	.	.	.
KIF1C	10749	broad.mit.edu	36	17	4851040	4851040	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006612	exon14	c.G1272A	p.E424E	.	.	.
USP6	9098	broad.mit.edu	36	17	4989530	4989530	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004505	exon19	c.G2099A	p.R700Q	.	.	.
RABEP1	9135	broad.mit.edu	36	17	5179211	5179211	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001083585	exon4	c.C376T	p.R126C	.	.	.
ANKFN1	162282	broad.mit.edu	36	17	51890323	51890323	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153228	exon13	c.C1550A	p.A517E	.	.	.
ANKFN1	162282	broad.mit.edu	36	17	51898722	51898722	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153228	exon14	c.C1573T	p.L525F	.	.	.
MIS12	79003	broad.mit.edu	36	17	5333300	5333300	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024039	exon3	c.T394G	p.L132V	.	.	.
MIS12	79003	broad.mit.edu	36	17	5333508	5333508	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024039	exon3	c.G602A	p.R201Q	.	.	.
OR4D1	26689	broad.mit.edu	36	17	53587615	53587615	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012374	exon1	c.C102A	p.V34V	.	.	.
OR4D1	26689	broad.mit.edu	36	17	53588260	53588260	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012374	exon1	c.G747T	p.M249I	.	.	.
OR4D2	124538	broad.mit.edu	36	17	53602576	53602576	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004707	exon1	c.T561C	p.L187L	.	.	.
EPX	8288	broad.mit.edu	36	17	53625748	53625748	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000502	exon3	c.G188A	p.R63H	.	.	.
EPX	8288	broad.mit.edu	36	17	53629481	53629481	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000502	exon7	c.G984A	p.R328R	.	.	.
C17orf47	284083	broad.mit.edu	36	17	53975914	53975914	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001038704	exon1	c.G633A	p.T211T	.	.	.
NLRP1	22861	broad.mit.edu	36	17	5402474	5402474	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033007	exon4	c.T2266G	p.F756V	.	.	.
TRIM37	4591	broad.mit.edu	36	17	54507834	54507834	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005207	exon8	c.G640T	p.E214X	.	.	.
C17orf71	55181	broad.mit.edu	36	17	54645449	54645449	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018149	exon3	c.G2483A	p.R828K	.	.	.
CLTC	1213	broad.mit.edu	36	17	55113799	55113799	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004859	exon21	c.G3259T	p.E1087X	.	.	.
TMEM49	81671	broad.mit.edu	36	17	55167554	55167554	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030938	exon3	c.G150A	p.P50P	.	.	.
RNFT1	51136	broad.mit.edu	36	17	55394721	55394721	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016125	exon3	c.T553C	p.Y185H	.	.	.
HEATR6	63897	broad.mit.edu	36	17	55480462	55480462	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022070	exon17	c.C2617T	p.R873X	.	.	.
APPBP2	10513	broad.mit.edu	36	17	55879930	55879930	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006380	exon13	c.C1552T	p.R518X	.	.	.
TBX4	9496	broad.mit.edu	36	17	56912237	56912237	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018488	exon7	c.G796T	p.E266X	.	.	.
BRIP1	83990	broad.mit.edu	36	17	57212468	57212468	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032043	exon13	c.C1871T	p.S624L	.	.	.
MED13	9969	broad.mit.edu	36	17	57427402	57427402	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005121	exon10	c.G2074T	p.E692X	.	.	.
TANC2	26115	broad.mit.edu	36	17	58819840	58819840	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025185	exon14	c.C2582A	p.P861Q	.	.	.
TANC2	26115	broad.mit.edu	36	17	58851308	58851308	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025185	exon25	c.C4233T	p.F1411F	.	.	.
TANC2	26115	broad.mit.edu	36	17	58853030	58853030	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025185	exon25	c.C5955T	p.F1985F	.	.	.
DDX42	11325	broad.mit.edu	36	17	59242240	59242240	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203499	exon13	c.G1373A	p.R458Q	.	.	.
TEX2	55852	broad.mit.edu	36	17	59644150	59644150	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018469	exon2	c.G1160A	p.G387E	.	.	.
DDX5	1655	broad.mit.edu	36	17	59926616	59926616	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004396	exon13	c.G1732A	p.G578R	.	.	.
CCDC45	90799	broad.mit.edu	36	17	59963688	59963688	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138363	exon19	c.C2285T	p.A762V	.	.	.
GNA13	10672	broad.mit.edu	36	17	60441343	60441343	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006572	exon4	c.G628A	p.D210N	.	.	.
GNA13	10672	broad.mit.edu	36	17	60483048	60483048	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006572	exon1	c.G126T	p.K42N	.	.	.
PSMD12	5718	broad.mit.edu	36	17	62773972	62773972	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174871	exon5	c.G542A	p.R181Q	.	.	.
PITPNM3	83394	broad.mit.edu	36	17	6308307	6308307	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031220	exon16	c.C2063T	p.T688I	.	.	.
BPTF	2186	broad.mit.edu	36	17	63346662	63346662	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182641	exon13	c.G5498A	p.R1833Q	.	.	.
ARSG	22901	broad.mit.edu	36	17	63851512	63851512	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014960	exon3	c.G391A	p.V131I	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64393009	64393009	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007168	exon25	c.G3352A	p.E1118K	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64411109	64411109	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007168	exon18	c.G2405A	p.R802Q	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64492656	64492656	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080283	exon34	c.G4344A	p.S1448S	.	.	.
ABCA6	23460	broad.mit.edu	36	17	64592788	64592788	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080284	exon32	c.C4160T	p.A1387V	.	.	.
ABCA6	23460	broad.mit.edu	36	17	64642377	64642377	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080284	exon5	c.G562T	p.E188X	.	.	.
KIAA0753	9851	broad.mit.edu	36	17	6467609	6467609	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014804	exon5	c.G832T	p.E278X	.	.	.
ABCA10	10349	broad.mit.edu	36	17	64733076	64733076	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080282	exon4	c.G19A	p.A7T	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64759591	64759591	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172232	exon35	c.G4427A	p.R1476Q	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64767485	64767485	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172232	exon28	c.A3688C	p.K1230Q	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64820876	64820876	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172232	exon3	c.A259C	p.I87L	.	.	.
KCNJ16	3773	broad.mit.edu	36	17	65640427	65640427	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018658	exon5	c.C604T	p.R202C	.	.	.
TEKT1	83659	broad.mit.edu	36	17	6644954	6644954	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053285	exon7	c.T885A	p.N295K	.	.	.
NXN	64359	broad.mit.edu	36	17	673634	673634	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022463	exon3	c.C600A	p.F200L	.	.	.
COG1	9382	broad.mit.edu	36	17	68709283	68709283	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018714	exon7	c.C1722T	p.S574S	.	.	.
C17orf80	55028	broad.mit.edu	36	17	68744092	68744092	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100622	exon3	c.C876A	p.V292V	.	.	.
GPR142	350383	broad.mit.edu	36	17	69880070	69880070	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181790	exon4	c.C1125T	p.F375F	.	.	.
CD300A	11314	broad.mit.edu	36	17	69985234	69985234	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007261	exon4	c.G598T	p.A200S	.	.	.
SLC9A3R1	9368	broad.mit.edu	36	17	70276370	70276370	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004252	exon6	c.G1057A	p.E353K	.	.	.
OTOP2	92736	broad.mit.edu	36	17	70438823	70438823	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178160	exon6	c.C1498A	p.L500I	.	.	.
OTOP3	347741	broad.mit.edu	36	17	70454625	70454625	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178233	exon6	c.C1080T	p.I360I	.	.	.
DLG4	1742	broad.mit.edu	36	17	7047355	7047355	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128827	exon7	c.G514A	p.A172T	.	.	.
DLG4	1742	broad.mit.edu	36	17	7047805	7047805	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128827	exon5	c.G256A	p.G86S	.	.	.
GRB2	2885	broad.mit.edu	36	17	70829336	70829336	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002086	exon5	c.A467G	p.Q156R	.	.	.
RNF157	114804	broad.mit.edu	36	17	71674785	71674785	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052916	exon5	c.A461G	p.N154S	.	.	.
PRPSAP1	5635	broad.mit.edu	36	17	71837765	71837765	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002766	exon6	c.T589C	p.Y197H	.	.	.
C17orf95	124512	broad.mit.edu	36	17	72241283	72241283	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080510	exon5	c.G493A	p.E165K	.	.	.
C17orf74	201243	broad.mit.edu	36	17	7270627	7270627	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175734	exon3	c.A593G	p.Y198C	.	.	.
SEC14L1	6397	broad.mit.edu	36	17	72708185	72708185	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039573	exon9	c.C844T	p.R282W	.	.	.
CHRNB1	1140	broad.mit.edu	36	17	7299857	7299857	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000747	exon10	c.C1238T	p.A413V	.	.	.
TNRC6C	57690	broad.mit.edu	36	17	73606040	73606040	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018996	exon18	c.C4328T	p.S1443L	.	.	.
FXR2	9513	broad.mit.edu	36	17	7448069	7448069	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004860	exon4	c.C283T	p.R95W	.	.	.
C1QTNF1	114897	broad.mit.edu	36	17	74555355	74555355	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198593	exon4	c.G436A	p.A146T	.	.	.
SAT2	112483	broad.mit.edu	36	17	7470821	7470821	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133491	exon5	c.C320T	p.S107F	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7578313	7578313	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020877	exon5	c.A716C	p.K239T	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7621644	7621644	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020877	exon32	c.C5214A	p.D1738E	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7630204	7630204	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020877	exon39	c.G6167A	p.G2056D	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7662029	7662029	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020877	exon67	c.G10277A	p.R3426Q	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7663352	7663352	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020877	exon71	c.T10916C	p.I3639T	.	.	.
CHD3	1107	broad.mit.edu	36	17	7742125	7742125	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005852	exon12	c.G2031T	p.K677N	.	.	.
CHD3	1107	broad.mit.edu	36	17	7744692	7744692	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005852	exon18	c.C2896T	p.R966W	.	.	.
CNTROB	116840	broad.mit.edu	36	17	7791750	7791750	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053051	exon14	c.G2130T	p.K710N	.	.	.
NARF	26502	broad.mit.edu	36	17	78015496	78015496	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031968	exon3	c.C153T	p.S51S	.	.	.
ZNF750	79755	broad.mit.edu	36	17	78381612	78381612	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024702	exon3	c.G1867A	p.A623T	.	.	.
ALOX15B	247	broad.mit.edu	36	17	7891043	7891043	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039130	exon9	c.C1294T	p.R432W	.	.	.
ALOXE3	59344	broad.mit.edu	36	17	7959721	7959721	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165960	exon4	c.T759G	p.I253M	.	.	.
TMEM107	84314	broad.mit.edu	36	17	8018590	8018590	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183065	exon4	c.C326T	p.T109M	.	.	.
ARHGEF15	22899	broad.mit.edu	36	17	8157163	8157163	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173728	exon3	c.G800A	p.R267H	.	.	.
PIK3R6	146850	broad.mit.edu	36	17	8663196	8663196	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010855	exon18	c.A1924G	p.T642A	.	.	.
NTN1	9423	broad.mit.edu	36	17	9006915	9006915	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004822	exon3	c.C1079T	p.S360L	.	.	.
STX8	9482	broad.mit.edu	36	17	9222645	9222645	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004853	exon7	c.C592T	p.R198C	.	.	.
STX8	9482	broad.mit.edu	36	17	9412450	9412450	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004853	exon2	c.G80A	p.R27Q	.	.	.
RCVRN	5957	broad.mit.edu	36	17	9749004	9749004	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002903	exon1	c.C219T	p.F73F	.	.	.
LIPI	149998	broad.mit.edu	36	21	14403238	14403238	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198996	exon10	c.G1393T	p.D465Y	.	.	.
USP25	29761	broad.mit.edu	36	21	16158615	16158615	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013396	exon19	c.G2495A	p.R832K	.	.	.
USP25	29761	broad.mit.edu	36	21	16172643	16172643	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013396	exon24	c.G3146A	p.R1049Q	.	.	.
TMPRSS15	5651	broad.mit.edu	36	21	18654018	18654018	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002772	exon8	c.C807T	p.F269F	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21726424	21726424	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004540	exon12	c.G1606T	p.E536X	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21771617	21771617	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004540	exon15	c.G2031A	p.P677P	.	.	.
MRPL39	54148	broad.mit.edu	36	21	25900781	25900781	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017446	exon2	c.G131A	p.R44Q	.	.	.
GABPA	2551	broad.mit.edu	36	21	26052356	26052356	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001197297	exon6	c.C718A	p.L240I	.	.	.
ADAMTS1	9510	broad.mit.edu	36	21	27134685	27134685	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006988	exon5	c.C1446T	p.Y482Y	.	.	.
ADAMTS5	11096	broad.mit.edu	36	21	27237665	27237665	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007038	exon3	c.G1310A	p.R437H	.	.	.
LTN1	26046	broad.mit.edu	36	21	29240109	29240109	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015565	exon21	c.T3797C	p.V1266A	.	.	.
LTN1	26046	broad.mit.edu	36	21	29260595	29260595	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015565	exon10	c.G2227A	p.E743K	.	.	.
USP16	10600	broad.mit.edu	36	21	29333323	29333323	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001992	exon8	c.G835T	p.E279X	.	.	.
GRIK1	2897	broad.mit.edu	36	21	29871231	29871231	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175611	exon13	c.C2009T	p.S670L	.	.	.
CLDN17	26285	broad.mit.edu	36	21	30460640	30460640	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012131	exon1	c.G167A	p.R56Q	.	.	.
KRTAP15-1	254950	broad.mit.edu	36	21	30734753	30734753	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181623	exon1	c.G237T	p.K79N	.	.	.
KRTAP19-1	337882	broad.mit.edu	36	21	30774454	30774454	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181607	exon1	c.C54T	p.F18F	.	.	.
KRTAP19-3	337970	broad.mit.edu	36	21	30786100	30786100	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181609	exon1	c.G47C	p.G16A	.	.	.
KRTAP19-4	337971	broad.mit.edu	36	21	30791228	30791228	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181610	exon1	c.C72A	p.G24G	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31430123	31430123	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003253	exon24	c.C3882T	p.F1294F	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31489483	31489483	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003253	exon14	c.G2503T	p.E835X	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31546187	31546187	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003253	exon6	c.G1153A	p.E385K	.	.	.
SYNJ1	8867	broad.mit.edu	36	21	32933958	32933958	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003895	exon30	c.G3708A	p.T1236T	.	.	.
GCFC1	94104	broad.mit.edu	36	21	33064017	33064017	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013329	exon2	c.G451T	p.E151X	.	.	.
IL10RB	3588	broad.mit.edu	36	21	33577362	33577362	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000628	exon5	c.C592T	p.R198W	.	.	.
IFNGR2	3460	broad.mit.edu	36	21	33715797	33715797	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005534	exon3	c.G347A	p.R116Q	.	.	.
DNAJC28	54943	broad.mit.edu	36	21	33783262	33783262	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040192	exon2	c.C309A	p.L103L	.	.	.
ITSN1	6453	broad.mit.edu	36	21	34060151	34060151	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001132	exon10	c.T891G	p.P297P	.	.	.
MRPS6	64968	broad.mit.edu	36	21	34419536	34419536	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032476	exon2	c.G71A	p.R24H	.	.	.
KCNE1	3753	broad.mit.edu	36	21	34743780	34743780	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127668	exon3	c.C23T	p.A8V	.	.	.
CBR3	874	broad.mit.edu	36	21	36432084	36432084	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001236	exon2	c.G381A	p.P127P	.	.	.
DOPEY2	9980	broad.mit.edu	36	21	36545348	36545348	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005128	exon22	c.T5017G	p.L1673V	.	.	.
MORC3	23515	broad.mit.edu	36	21	36633054	36633054	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015358	exon5	c.G573T	p.K191N	.	.	.
MORC3	23515	broad.mit.edu	36	21	36663988	36663988	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015358	exon15	c.G2452A	p.D818N	.	.	.
TTC3	7267	broad.mit.edu	36	21	37458228	37458228	+	Missense_Mutation	SNP	G	A	A	rs1133018	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001894	exon32	c.G3176A	p.R1059Q	.	.	.
TTC3	7267	broad.mit.edu	36	21	37460023	37460023	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001894	exon33	c.G3637A	p.E1213K	.	.	.
DYRK1A	1859	broad.mit.edu	36	21	37774960	37774960	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130436	exon4	c.G451A	p.E151K	.	.	.
ETS2	2114	broad.mit.edu	36	21	39108701	39108701	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005239	exon5	c.A431C	p.K144T	.	.	.
BRWD1	54014	broad.mit.edu	36	21	39523226	39523226	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033656	exon26	c.G3007T	p.E1003X	.	.	.
BRWD1	54014	broad.mit.edu	36	21	39592272	39592272	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007246	exon5	c.C305A	p.S102Y	.	.	.
SH3BGR	6450	broad.mit.edu	36	21	39756217	39756217	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007341	exon2	c.A281C	p.K94T	.	.	.
IGSF5	150084	broad.mit.edu	36	21	40065000	40065000	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080444	exon4	c.C706T	p.R236W	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40986640	40986640	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001389	exon3	c.C474A	p.V158V	.	.	.
PDE9A	5152	broad.mit.edu	36	21	43026597	43026597	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001574	exon5	c.G302A	p.R101H	.	.	.
PKNOX1	5316	broad.mit.edu	36	21	43303274	43303274	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004571	exon4	c.T222C	p.C74C	.	.	.
RRP1B	23076	broad.mit.edu	36	21	43921119	43921119	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015056	exon8	c.C692T	p.T231M	.	.	.
TRPM2	7226	broad.mit.edu	36	21	44658232	44658232	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003307	exon20	c.C2993A	p.P998H	.	.	.
DIP2A	23181	broad.mit.edu	36	21	46784238	46784238	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146114	exon15	c.G1750A	p.A584T	.	.	.
S100B	6285	broad.mit.edu	36	21	46846625	46846625	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006272	exon2	c.C132A	p.F44L	.	.	.
TPTE	7179	broad.mit.edu	36	21	9938249	9938249	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199259	exon19	c.C1214T	p.S405L	.	.	.
TPTE	7179	broad.mit.edu	36	21	9956837	9956837	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199259	exon14	c.G773A	p.R258Q	.	.	.
NUBP1	4682	broad.mit.edu	36	16	10762814	10762814	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002484	exon8	c.C699T	p.F233F	.	.	.
TXNDC11	51061	broad.mit.edu	36	16	11699485	11699485	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015914	exon7	c.C1104T	p.D368D	.	.	.
TXNDC11	51061	broad.mit.edu	36	16	11699599	11699599	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015914	exon7	c.G990T	p.W330C	.	.	.
RUNDC2A	84127	broad.mit.edu	36	16	12044380	12044380	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032167	exon5	c.G373A	p.E125K	.	.	.
PARN	5073	broad.mit.edu	36	16	14618977	14618977	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002582	exon6	c.G359A	p.G120E	.	.	.
NOMO1	23420	broad.mit.edu	36	16	14881419	14881419	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014287	exon24	c.T2804G	p.F935C	.	.	.
NTAN1	123803	broad.mit.edu	36	16	15049230	15049230	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173474	exon3	c.T233G	p.V78G	.	.	.
KIAA0430	9665	broad.mit.edu	36	16	15626521	15626521	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184999	exon9	c.G1955A	p.R652H	.	.	.
IFT140	9742	broad.mit.edu	36	16	1582287	1582287	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014714	exon6	c.C525T	p.S175S	.	.	.
C16orf63	123811	broad.mit.edu	36	16	15874860	15874860	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144600	exon4	c.G437T	p.R146I	.	.	.
NOMO2	283820	broad.mit.edu	36	16	18457478	18457478	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004060	exon11	c.C1091A	p.S364X	.	.	.
SMG1	23049	broad.mit.edu	36	16	18734277	18734277	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015092	exon59	c.A10500C	p.K3500N	.	.	.
SMG1	23049	broad.mit.edu	36	16	18749156	18749156	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015092	exon52	c.G8829A	p.P2943P	.	.	.
SMG1	23049	broad.mit.edu	36	16	18755198	18755198	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015092	exon47	c.A7762G	p.T2588A	.	.	.
SMG1	23049	broad.mit.edu	36	16	18782618	18782618	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015092	exon25	c.A3550C	p.N1184H	.	.	.
SMG1	23049	broad.mit.edu	36	16	18789484	18789484	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015092	exon18	c.G2441A	p.R814Q	.	.	.
GPRC5B	51704	broad.mit.edu	36	16	19790823	19790823	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016235	exon2	c.C846A	p.V282V	.	.	.
GP2	2813	broad.mit.edu	36	16	20237178	20237178	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007242	exon6	c.G642T	p.T214T	.	.	.
GP2	2813	broad.mit.edu	36	16	20243052	20243052	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001502	exon3	c.C122T	p.S41L	.	.	.
UMOD	7369	broad.mit.edu	36	16	20256214	20256214	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003361	exon8	c.G1640A	p.R547Q	.	.	.
ACSM2B	348158	broad.mit.edu	36	16	20474123	20474123	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105069	exon4	c.G565A	p.D189N	.	.	.
ACSM1	116285	broad.mit.edu	36	16	20590441	20590441	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052956	exon4	c.T665C	p.V222A	.	.	.
THUMPD1	55623	broad.mit.edu	36	16	20656741	20656741	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017736	exon3	c.T445C	p.Y149H	.	.	.
LOC81691	81691	broad.mit.edu	36	16	20768299	20768299	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199053	exon20	c.C2321T	p.S774L	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20958715	20958715	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017539	exon33	c.G4690T	p.E1564X	.	.	.
DNAH3	55567	broad.mit.edu	36	16	21016313	21016313	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017539	exon18	c.T2529C	p.N843N	.	.	.
VWA3A	146177	broad.mit.edu	36	16	22040379	22040379	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173615	exon14	c.C1296A	p.F432L	.	.	.
USP31	57478	broad.mit.edu	36	16	23003761	23003761	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020718	exon11	c.G1751A	p.R584H	.	.	.
GGA2	23062	broad.mit.edu	36	16	23412208	23412208	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015044	exon4	c.G325A	p.E109K	.	.	.
PLK1	5347	broad.mit.edu	36	16	23599856	23599856	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005030	exon3	c.A698G	p.D233G	.	.	.
TNRC6A	27327	broad.mit.edu	36	16	24708513	24708513	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014494	exon6	c.C1049A	p.S350Y	.	.	.
TNRC6A	27327	broad.mit.edu	36	16	24710148	24710148	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014494	exon6	c.C2684T	p.S895F	.	.	.
LCMT1	51451	broad.mit.edu	36	16	25083523	25083523	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016309	exon7	c.T673C	p.F225L	.	.	.
ZKSCAN2	342357	broad.mit.edu	36	16	25159369	25159369	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012981	exon7	c.C2173T	p.P725S	.	.	.
ZKSCAN2	342357	broad.mit.edu	36	16	25162884	25162884	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012981	exon6	c.C1704T	p.H568H	.	.	.
KIAA0556	23247	broad.mit.edu	36	16	27640446	27640446	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015202	exon14	c.C1672T	p.R558X	.	.	.
KIAA0556	23247	broad.mit.edu	36	16	27669026	27669026	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015202	exon16	c.C3244T	p.R1082W	.	.	.
ATXN2L	11273	broad.mit.edu	36	16	28744201	28744201	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148415	exon2	c.G313T	p.G105X	.	.	.
SEZ6L2	26470	broad.mit.edu	36	16	29798814	29798814	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114100	exon7	c.G1103T	p.R368L	.	.	.
SEPHS2	22928	broad.mit.edu	36	16	30363310	30363310	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012248	exon1	c.G1240A	p.A414T	.	.	.
SEPHS2	22928	broad.mit.edu	36	16	30363842	30363842	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012248	exon1	c.C708A	p.F236L	.	.	.
SRCAP	10847	broad.mit.edu	36	16	30632143	30632143	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006662	exon15	c.G2244A	p.A748A	.	.	.
HSD3B7	80270	broad.mit.edu	36	16	30905434	30905434	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025193	exon5	c.G439A	p.E147K	.	.	.
ZNF267	10308	broad.mit.edu	36	16	31834858	31834858	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003414	exon4	c.G1787A	p.R596Q	.	.	.
ZNF267	10308	broad.mit.edu	36	16	31834938	31834938	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003414	exon4	c.C1867T	p.R623W	.	.	.
OR1F1	4992	broad.mit.edu	36	16	3194785	3194785	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012360	exon1	c.G538A	p.D180N	.	.	.
ZNF434	54925	broad.mit.edu	36	16	3372998	3372998	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017810	exon6	c.C1313T	p.A438V	.	.	.
ZNF434	54925	broad.mit.edu	36	16	3374775	3374775	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017810	exon5	c.C283T	p.R95C	.	.	.
ZNF174	7727	broad.mit.edu	36	16	3398870	3398870	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003450	exon3	c.C1174T	p.R392C	.	.	.
SRL	6345	broad.mit.edu	36	16	4182187	4182187	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098814	exon6	c.G1390A	p.E464K	.	.	.
MYLK3	91807	broad.mit.edu	36	16	45300956	45300956	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182493	exon12	c.G2396T	p.W799L	.	.	.
PHKB	5257	broad.mit.edu	36	16	46094405	46094405	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031835	exon5	c.G287A	p.R96Q	.	.	.
ABCC12	94160	broad.mit.edu	36	16	46729729	46729729	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033226	exon6	c.A890C	p.K297T	.	.	.
LONP2	83752	broad.mit.edu	36	16	46887499	46887499	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031490	exon9	c.C1456A	p.L486I	.	.	.
C16orf78	123970	broad.mit.edu	36	16	47988068	47988068	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144602	exon4	c.C628T	p.P210S	.	.	.
ZNF423	23090	broad.mit.edu	36	16	48228797	48228797	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015069	exon5	c.G1767T	p.K589N	.	.	.
UBN1	29855	broad.mit.edu	36	16	4849935	4849935	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016936	exon5	c.G636T	p.E212D	.	.	.
HEATR3	55027	broad.mit.edu	36	16	48686145	48686145	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182922	exon12	c.A1539C	p.E513D	.	.	.
HEATR3	55027	broad.mit.edu	36	16	48693736	48693736	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182922	exon14	c.T1809G	p.A603A	.	.	.
PPL	5493	broad.mit.edu	36	16	4874952	4874952	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002705	exon22	c.C3705A	p.V1235V	.	.	.
PAPD5	64282	broad.mit.edu	36	16	48814648	48814648	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040284	exon8	c.T1185G	p.F395L	.	.	.
NKD1	85407	broad.mit.edu	36	16	49224660	49224660	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033119	exon10	c.C880T	p.R294X	.	.	.
SNX20	124460	broad.mit.edu	36	16	49265406	49265406	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182854	exon4	c.G363A	p.A121A	.	.	.
SALL1	6299	broad.mit.edu	36	16	49730929	49730929	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002968	exon2	c.C2705A	p.S902X	.	.	.
SALL1	6299	broad.mit.edu	36	16	49733483	49733483	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002968	exon2	c.G151A	p.E51K	.	.	.
CHD9	80205	broad.mit.edu	36	16	51915730	51915730	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025134	exon39	c.A8068C	p.N2690H	.	.	.
RPGRIP1L	23322	broad.mit.edu	36	16	52243974	52243974	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127897	exon15	c.G2126A	p.R709Q	.	.	.
CAPNS2	84290	broad.mit.edu	36	16	54158408	54158408	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032330	exon1	c.G239A	p.R80Q	.	.	.
CES1	1066	broad.mit.edu	36	16	54417655	54417655	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001266	exon3	c.G311A	p.R104Q	.	.	.
AMFR	267	broad.mit.edu	36	16	54960631	54960631	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144	exon11	c.G1490A	p.R497Q	.	.	.
BBS2	583	broad.mit.edu	36	16	55094202	55094202	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031885	exon8	c.G824A	p.R275Q	.	.	.
FAM192A	80011	broad.mit.edu	36	16	55763701	55763701	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024946	exon4	c.G311A	p.R104Q	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57116684	57116684	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016284	exon46	c.G6684A	p.A2228A	.	.	.
CDH8	1006	broad.mit.edu	36	16	60245250	60245250	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001796	exon12	c.C2163T	p.V721V	.	.	.
CDH8	1006	broad.mit.edu	36	16	60412405	60412405	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001796	exon6	c.G949A	p.D317N	.	.	.
CDH11	1009	broad.mit.edu	36	16	63590094	63590094	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001797	exon4	c.A395G	p.D132G	.	.	.
CDH16	1014	broad.mit.edu	36	16	65501790	65501790	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004062	exon15	c.G2041T	p.D681Y	.	.	.
CBFB	865	broad.mit.edu	36	16	65673671	65673671	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001755	exon5	c.G454A	p.E152K	.	.	.
CBFB	865	broad.mit.edu	36	16	65690129	65690129	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001755	exon6	c.G542T	p.R181I	.	.	.
LRRC36	55282	broad.mit.edu	36	16	65941648	65941648	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018296	exon5	c.C531T	p.S177S	.	.	.
LRRC36	55282	broad.mit.edu	36	16	65962403	65962403	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018296	exon9	c.G1251A	p.E417E	.	.	.
GFOD2	81577	broad.mit.edu	36	16	66267304	66267304	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030819	exon3	c.C413T	p.S138L	.	.	.
DPEP2	64174	broad.mit.edu	36	16	66583249	66583249	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022355	exon5	c.A655C	p.T219P	.	.	.
PLA2G15	23659	broad.mit.edu	36	16	66850906	66850906	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012320	exon6	c.A1084G	p.T362A	.	.	.
SMPD3	55512	broad.mit.edu	36	16	66962458	66962458	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018667	exon3	c.G1128T	p.E376D	.	.	.
ZFP90	146198	broad.mit.edu	36	16	67155180	67155180	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133458	exon4	c.G989A	p.R330Q	.	.	.
CDH3	1001	broad.mit.edu	36	16	67278966	67278966	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001793	exon12	c.G1621A	p.V541I	.	.	.
CDH1	999	broad.mit.edu	36	16	67403126	67403126	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004360	exon7	c.G871A	p.D291N	.	.	.
COG4	25839	broad.mit.edu	36	16	69103746	69103746	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015386	exon5	c.A635C	p.K212T	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69457644	69457644	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032821	exon67	c.C11397T	p.F3799F	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69465935	69465935	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032821	exon64	c.C10719T	p.V3573V	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69495045	69495045	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032821	exon52	c.C8830T	p.R2944W	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69543917	69543917	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032821	exon41	c.C6436T	p.R2146C	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69565684	69565684	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032821	exon33	c.C4927T	p.R1643C	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69579402	69579402	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032821	exon27	c.G4117A	p.E1373K	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69582760	69582760	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032821	exon25	c.G3826T	p.E1276X	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69609618	69609618	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032821	exon23	c.C3559T	p.R1187C	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69660867	69660867	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032821	exon14	c.C1778A	p.S593Y	.	.	.
ZNF19	7567	broad.mit.edu	36	16	70066758	70066758	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006961	exon6	c.G1193T	p.R398I	.	.	.
TAT	6898	broad.mit.edu	36	16	70159563	70159563	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000353	exon12	c.G1350A	p.E450E	.	.	.
PHLPP2	23035	broad.mit.edu	36	16	70246653	70246653	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015020	exon16	c.T2576C	p.V859A	.	.	.
AP1G1	164	broad.mit.edu	36	16	70326055	70326055	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001030007	exon23	c.G2334A	p.T778T	.	.	.
AP1G1	164	broad.mit.edu	36	16	70365902	70365902	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001030007	exon3	c.T296C	p.V99A	.	.	.
DHX38	9785	broad.mit.edu	36	16	70687592	70687592	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014003	exon2	c.G35A	p.R12Q	.	.	.
PMFBP1	83449	broad.mit.edu	36	16	70714322	70714322	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160213	exon20	c.C2325T	p.G775G	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71403345	71403345	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006885	exon6	c.C3623T	p.S1208L	.	.	.
GLG1	2734	broad.mit.edu	36	16	73044689	73044689	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145666	exon25	c.G3384T	p.M1128I	.	.	.
RFWD3	55159	broad.mit.edu	36	16	73229332	73229332	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018124	exon7	c.G1117A	p.E373K	.	.	.
CNTNAP4	85445	broad.mit.edu	36	16	75112688	75112688	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033401	exon16	c.T2515G	p.L839V	.	.	.
MON1B	22879	broad.mit.edu	36	16	75789520	75789520	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014940	exon6	c.C1458T	p.F486F	.	.	.
ADAMTS18	170692	broad.mit.edu	36	16	75953574	75953574	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199355	exon7	c.G1145T	p.R382I	ADAMTS18,large_intestine,colon,Substitution - Missense,0	.	.
WWOX	51741	broad.mit.edu	36	16	76755586	76755586	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130791	exon5	c.G415A	p.E139K	.	.	.
RBFOX1	54715	broad.mit.edu	36	16	7699067	7699067	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145893	exon13	c.G1120A	p.E374K	.	.	.
CENPN	55839	broad.mit.edu	36	16	79611304	79611304	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018455	exon6	c.C453T	p.Y151Y	.	.	.
C16orf46	123775	broad.mit.edu	36	16	79652680	79652680	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152337	exon4	c.G775A	p.D259N	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79770775	79770775	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052892	exon13	c.G2236T	p.E746X	.	.	.
GAN	8139	broad.mit.edu	36	16	79954914	79954914	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022041	exon7	c.C1101T	p.F367F	.	.	.
PLCG2	5336	broad.mit.edu	36	16	80499594	80499594	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002661	exon17	c.G1630A	p.E544K	.	.	.
PLCG2	5336	broad.mit.edu	36	16	80525579	80525579	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002661	exon26	c.C2784T	p.I928I	.	.	.
PLCG2	5336	broad.mit.edu	36	16	80527349	80527349	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002661	exon27	c.G2917A	p.D973N	.	.	.
PLCG2	5336	broad.mit.edu	36	16	80527458	80527458	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002661	exon27	c.T3026C	p.M1009T	.	.	.
CDH13	1012	broad.mit.edu	36	16	81808457	81808457	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001257	exon5	c.G490A	p.D164N	.	.	.
MLYCD	23417	broad.mit.edu	36	16	82503459	82503460	+	Missense_Mutation	DNP	GT	TA	TA	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012213	exon4	c.934_935TA	.	.	.	.
USP10	9100	broad.mit.edu	36	16	83354147	83354147	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005153	exon9	c.C1606T	p.H536Y	.	.	.
CRISPLD2	83716	broad.mit.edu	36	16	83445924	83445924	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031476	exon6	c.T697C	p.L233L	.	.	.
IRF8	3394	broad.mit.edu	36	16	84500117	84500117	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002163	exon3	c.G195A	p.G65G	.	.	.
ZCCHC14	23174	broad.mit.edu	36	16	86002658	86002658	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015144	exon12	c.A2759C	p.D920A	.	.	.
CA5A	763	broad.mit.edu	36	16	86527546	86527546	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001739	exon1	c.G12A	p.R4R	.	.	.
USP7	7874	broad.mit.edu	36	16	8912125	8912125	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003470	exon11	c.A1139G	p.D380G	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9764521	9764521	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000833	exon14	c.G4381A	p.E1461K	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9765599	9765599	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134408	exon13	c.C3303T	p.V1101V	.	.	.
FAM38B	63895	broad.mit.edu	36	18	10661583	10661583	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022068	exon52	c.A8200G	p.I2734V	.	.	.
FAM38B	63895	broad.mit.edu	36	18	10686504	10686504	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022068	exon42	c.C6522A	p.F2174L	.	.	.
GNAL	2774	broad.mit.edu	36	18	11743891	11743891	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142339	exon5	c.C340T	p.R114X	.	.	.
GNAL	2774	broad.mit.edu	36	18	11814922	11814922	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142339	exon6	c.C399A	p.F133L	.	.	.
TUBB6	84617	broad.mit.edu	36	18	12301000	12301000	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032525	exon3	c.C225T	p.S75S	.	.	.
AFG3L2	10939	broad.mit.edu	36	18	12327383	12327383	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006796	exon16	c.G2132T	p.R711I	.	.	.
MC5R	4161	broad.mit.edu	36	18	13815840	13815840	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005913	exon1	c.G76C	p.V26L	.	.	.
MC5R	4161	broad.mit.edu	36	18	13816099	13816099	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005913	exon1	c.G335A	p.R112H	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19705574	19705574	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198129	exon38	c.C4949T	p.A1650V	.	.	.
IMPACT	55364	broad.mit.edu	36	18	20262836	20262836	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018439	exon3	c.G171A	p.M57I	.	.	.
IMPACT	55364	broad.mit.edu	36	18	20284787	20284787	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018439	exon11	c.A941G	p.D314G	.	.	.
CHST9	83539	broad.mit.edu	36	18	22750651	22750651	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031422	exon6	c.A902G	p.Y301C	.	.	.
CHST9	83539	broad.mit.edu	36	18	22750888	22750888	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031422	exon6	c.C665T	p.A222V	.	.	.
CDH2	1000	broad.mit.edu	36	18	23836961	23836961	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001792	exon7	c.G1018A	p.E340K	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2678662	2678662	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015295	exon7	c.G790A	p.E264K	.	.	.
DSC2	1824	broad.mit.edu	36	18	26926064	26926064	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004949	exon3	c.A352C	p.K118Q	.	.	.
DSC1	1823	broad.mit.edu	36	18	26974058	26974058	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004948	exon10	c.G1465T	p.E489X	.	.	.
DSC1	1823	broad.mit.edu	36	18	26976126	26976126	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004948	exon9	c.A1094C	p.E365A	.	.	.
DSG1	1828	broad.mit.edu	36	18	27180098	27180098	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001942	exon14	c.C2039A	p.S680Y	.	.	.
DSG3	1830	broad.mit.edu	36	18	27298157	27298157	+	Missense_Mutation	SNP	G	A	A	rs73414212	by-1000genomes	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001944	exon9	c.G1085A	p.R362Q	.	.	.
DSG3	1830	broad.mit.edu	36	18	27309905	27309905	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001944	exon16	c.T2684G	p.F895C	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2737526	2737526	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015295	exon30	c.C3808T	p.P1270S	.	.	.
DSG2	1829	broad.mit.edu	36	18	27380060	27380060	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001943	exon15	c.G2713A	p.E905K	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2740424	2740424	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015295	exon32	c.C4084A	p.L1362I	.	.	.
C18orf34	374864	broad.mit.edu	36	18	28926794	28926794	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198995	exon20	c.G2203T	p.E735X	.	.	.
MYOM1	8736	broad.mit.edu	36	18	3076121	3076121	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019856	exon29	c.T3878G	p.I1293S	.	.	.
MAPRE2	10982	broad.mit.edu	36	18	30936067	30936067	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143827	exon5	c.G520T	p.E174X	.	.	.
ZNF24	7572	broad.mit.edu	36	18	31171460	31171460	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006965	exon4	c.T841C	p.C281R	.	.	.
MYOM1	8736	broad.mit.edu	36	18	3154279	3154279	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019856	exon10	c.C1498T	p.R500X	.	.	.
MYOM1	8736	broad.mit.edu	36	18	3158875	3158875	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019856	exon9	c.C1279T	p.R427C	.	.	.
RPRD1A	55197	broad.mit.edu	36	18	31827225	31827225	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018170	exon7	c.C826T	p.R276C	.	.	.
SLC39A6	25800	broad.mit.edu	36	18	31960245	31960245	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012319	exon2	c.G724T	p.E242X	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32543256	32543256	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025135	exon15	c.G1912A	p.E638K	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32574753	32574753	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025135	exon18	c.G3188A	p.R1063Q	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40535663	40535663	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015559	exon2	c.G354T	p.K118N	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40786119	40786119	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015559	exon4	c.A2816T	p.K939M	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40786742	40786742	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015559	exon4	c.C3439T	p.L1147F	.	.	.
SLC14A2	8170	broad.mit.edu	36	18	41466385	41466385	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007163	exon5	c.G594A	p.E198E	.	.	.
SLC14A2	8170	broad.mit.edu	36	18	41473766	41473766	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007163	exon7	c.A901G	p.T301A	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41692732	41692732	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020964	exon41	c.G7023T	p.Q2341H	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41786512	41786512	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020964	exon3	c.C1104T	p.F368F	.	.	.
ATP5A1	498	broad.mit.edu	36	18	41929039	41929039	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004046	exon2	c.T117G	p.S39S	.	.	.
SMAD2	4087	broad.mit.edu	36	18	43628922	43628922	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135937	exon7	c.A829C	p.N277H	.	.	.
SMAD2	4087	broad.mit.edu	36	18	43649773	43649773	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135937	exon3	c.G269A	p.R90Q	.	.	.
DYM	54808	broad.mit.edu	36	18	44899261	44899261	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017653	exon15	c.C1597T	p.R533X	.	.	.
CCDC11	220136	broad.mit.edu	36	18	46031953	46031953	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145020	exon4	c.G673T	p.E225X	.	.	.
MBD1	4152	broad.mit.edu	36	18	46057496	46057496	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015847	exon3	c.G187A	p.D63N	.	.	.
MAPK4	5596	broad.mit.edu	36	18	46506487	46506487	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002747	exon5	c.C1011A	p.I337I	.	.	.
POLI	11201	broad.mit.edu	36	18	50074117	50074117	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007195	exon10	c.C1505T	p.S502F	.	.	.
TXNL1	9352	broad.mit.edu	36	18	52432803	52432803	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004786	exon6	c.A585C	p.K195N	.	.	.
NEDD4L	23327	broad.mit.edu	36	18	54184274	54184274	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015277	exon20	c.C1837T	p.R613W	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5424098	5424098	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012307	exon7	c.C628T	p.R210X	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54355886	54355886	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052947	exon5	c.T2513C	p.V838A	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54429955	54429955	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052947	exon2	c.C55A	p.L19I	.	.	.
ZNF532	55205	broad.mit.edu	36	18	54802271	54802271	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018181	exon11	c.A3499G	p.K1167E	.	.	.
CPLX4	339302	broad.mit.edu	36	18	55136636	55136636	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181654	exon1	c.A39G	p.V13V	.	.	.
CCBE1	147372	broad.mit.edu	36	18	55285040	55285040	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133459	exon5	c.G464A	p.G155D	.	.	.
CDH20	28316	broad.mit.edu	36	18	57317553	57317553	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031891	exon2	c.C401T	p.A134V	.	.	.
PHLPP1	23239	broad.mit.edu	36	18	58781670	58781670	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194449	exon14	c.C3545T	p.S1182L	.	.	.
TMEM200C	645369	broad.mit.edu	36	18	5881952	5881952	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080209	exon1	c.C111T	p.N37N	.	.	.
SERPINB12	89777	broad.mit.edu	36	18	59374401	59374401	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080474	exon1	c.A29C	p.K10T	.	.	.
SERPINB4	6318	broad.mit.edu	36	18	59457414	59457414	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002974	exon7	c.C753T	p.I251I	.	.	.
SERPINB4	6318	broad.mit.edu	36	18	59475060	59475060	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006919	exon7	c.C753T	p.I251I	.	.	.
SERPINB4	6318	broad.mit.edu	36	18	59479398	59479398	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006919	exon2	c.C33A	p.F11L	.	.	.
SERPINB10	5273	broad.mit.edu	36	18	59753163	59753163	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005024	exon7	c.G901T	p.D301Y	.	.	.
SERPINB10	5273	broad.mit.edu	36	18	59753379	59753379	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005024	exon7	c.A1117C	p.N373H	.	.	.
CDH19	28513	broad.mit.edu	36	18	62363000	62363000	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021153	exon6	c.A896G	p.D299G	.	.	.
DSEL	92126	broad.mit.edu	36	18	63329572	63329572	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032160	exon2	c.G3284A	p.R1095K	.	.	.
DSEL	92126	broad.mit.edu	36	18	63332769	63332769	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032160	exon2	c.C87A	p.F29L	.	.	.
CCDC102B	79839	broad.mit.edu	36	18	64872308	64872308	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001093729	exon10	c.G1496A	p.R499K	.	.	.
CD226	10666	broad.mit.edu	36	18	65714206	65714206	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006566	exon4	c.G438T	p.K146N	.	.	.
NETO1	81832	broad.mit.edu	36	18	68602011	68602011	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138966	exon7	c.C750A	p.F250L	.	.	.
FBXO15	201456	broad.mit.edu	36	18	69941604	69941604	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152676	exon8	c.C889T	p.R297C	.	.	.
FAM69C	125704	broad.mit.edu	36	18	70260186	70260186	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001044369	exon3	c.G1022A	p.R341H	.	.	.
CNDP2	55748	broad.mit.edu	36	18	70329058	70329058	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018235	exon6	c.G487A	p.E163K	.	.	.
TSHZ1	10194	broad.mit.edu	36	18	71129394	71129394	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005786	exon2	c.C2909T	p.S970L	.	.	.
LRRC30	339291	broad.mit.edu	36	18	7221884	7221884	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105581	exon1	c.G748A	p.E250K	.	.	.
LRRC30	339291	broad.mit.edu	36	18	7222012	7222012	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105581	exon1	c.C876T	p.F292F	.	.	.
ZNF236	7776	broad.mit.edu	36	18	72692726	72692726	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007345	exon3	c.G200A	p.R67Q	.	.	.
ZNF236	7776	broad.mit.edu	36	18	72766415	72766415	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007345	exon22	c.A3938G	p.N1313S	.	.	.
ZNF236	7776	broad.mit.edu	36	18	72768901	72768901	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007345	exon25	c.C4439T	p.S1480L	.	.	.
GALR1	2587	broad.mit.edu	36	18	73109658	73109658	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001480	exon3	c.G862A	p.A288T	.	.	.
YES1	7525	broad.mit.edu	36	18	733272	733272	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005433	exon7	c.G868A	p.E290K	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8237878	8237878	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002845	exon16	c.A2488C	p.N830H	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8304784	8304784	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002845	exon19	c.C2809A	p.H937N	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9185555	9185555	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015208	exon3	c.G94T	p.D32Y	.	.	.
PPP4R1	9989	broad.mit.edu	36	18	9547367	9547367	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042388	exon15	c.G2042A	p.R681Q	.	.	.
DCBLD2	131566	broad.mit.edu	36	3	100020746	100020746	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080927	exon8	c.G1077T	p.K359N	.	.	.
COL8A1	1295	broad.mit.edu	36	3	100992227	100992227	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020351	exon3	c.T11G	p.L4R	.	.	.
FILIP1L	11259	broad.mit.edu	36	3	101051863	101051863	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182909	exon5	c.A1347C	p.E449D	.	.	.
FANCD2	2177	broad.mit.edu	36	3	10108904	10108904	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033084	exon38	c.C3817T	p.R1273X	.	.	.
C3orf24	115795	broad.mit.edu	36	3	10121216	10121216	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164839	exon2	c.G243A	p.T81T	.	.	.
TBC1D23	55773	broad.mit.edu	36	3	101485299	101485299	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199198	exon4	c.G430A	p.D144N	.	.	.
TMEM45A	55076	broad.mit.edu	36	3	101770418	101770418	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018004	exon5	c.T651C	p.N217N	.	.	.
GPR128	84873	broad.mit.edu	36	3	101845163	101845163	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032787	exon8	c.G942A	p.T314T	.	.	.
GPR128	84873	broad.mit.edu	36	3	101896358	101896358	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032787	exon16	c.G2217A	p.S739S	.	.	.
ABI3BP	25890	broad.mit.edu	36	3	101976860	101976860	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015429	exon27	c.C2210T	p.S737L	.	.	.
ABI3BP	25890	broad.mit.edu	36	3	101979910	101979910	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015429	exon26	c.G2108T	p.G703V	.	.	.
ABI3BP	25890	broad.mit.edu	36	3	102063860	102063860	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015429	exon12	c.C1144T	p.L382L	.	.	.
IMPG2	50939	broad.mit.edu	36	3	102446238	102446238	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016247	exon13	c.G1627T	p.E543X	.	.	.
SENP7	57337	broad.mit.edu	36	3	102534342	102534342	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020654	exon18	c.T2535G	p.I845M	.	.	.
TATDN2	9797	broad.mit.edu	36	3	10287640	10287640	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014760	exon4	c.G1774T	p.G592X	.	.	.
FAM55C	91775	broad.mit.edu	36	3	103023371	103023371	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134456	exon8	c.C1563T	p.V521V	.	.	.
NFKBIZ	64332	broad.mit.edu	36	3	103053741	103053741	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005474	exon3	c.G112A	p.A38T	.	.	.
ZPLD1	131368	broad.mit.edu	36	3	103665767	103665767	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175056	exon7	c.G791A	p.R264Q	.	.	.
SLC6A11	6538	broad.mit.edu	36	3	10836174	10836174	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014229	exon2	c.T281C	p.V94A	.	.	.
SLC6A11	6538	broad.mit.edu	36	3	10891740	10891740	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014229	exon6	c.T851G	p.F284C	.	.	.
BBX	56987	broad.mit.edu	36	3	108974375	108974375	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142568	exon11	c.T1117G	p.F373V	.	.	.
IFT57	55081	broad.mit.edu	36	3	109408212	109408212	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018010	exon5	c.G607T	p.E203X	.	.	.
MYH15	22989	broad.mit.edu	36	3	109609934	109609934	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014981	exon33	c.T4563G	p.I1521M	.	.	.
DZIP3	9666	broad.mit.edu	36	3	109845767	109845767	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014648	exon14	c.C1208T	p.S403F	.	.	.
PHLDB2	90102	broad.mit.edu	36	3	113171321	113171321	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134439	exon16	c.A3410G	p.Y1137C	.	.	.
ABHD10	55347	broad.mit.edu	36	3	113188519	113188519	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018394	exon4	c.C507T	p.V169V	.	.	.
CCDC80	151887	broad.mit.edu	36	3	113840519	113840519	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199511	exon2	c.C924T	p.S308S	.	.	.
WDR52	55779	broad.mit.edu	36	3	114621655	114621655	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164496	exon5	c.G469A	p.A157T	.	.	.
KIAA2018	205717	broad.mit.edu	36	3	114858217	114858217	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009899	exon7	c.T5002G	p.Y1668D	.	.	.
KIAA2018	205717	broad.mit.edu	36	3	114858855	114858855	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009899	exon7	c.G4364T	p.S1455I	.	.	.
ZNF80	7634	broad.mit.edu	36	3	115438258	115438258	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007136	exon1	c.G354A	p.S118S	.	.	.
ZNF80	7634	broad.mit.edu	36	3	115438598	115438599	+	Missense_Mutation	DNP	CG	TA	TA	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007136	exon1	c.13_14TA	.	.	.	.
C3orf30	152405	broad.mit.edu	36	3	120348191	120348191	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152539	exon1	c.G465T	p.E155D	.	.	.
C3orf30	152405	broad.mit.edu	36	3	120349083	120349083	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152539	exon1	c.A1357G	p.T453A	.	.	.
GPR156	165829	broad.mit.edu	36	3	121369051	121369051	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168271	exon9	c.C1951T	p.R651X	.	.	.
LRRC58	116064	broad.mit.edu	36	3	121536642	121536642	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099678	exon3	c.A664C	p.N222H	.	.	.
TIMP4	7079	broad.mit.edu	36	3	12170855	12170855	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003256	exon4	c.A449G	p.H150R	.	.	.
GTF2E1	2960	broad.mit.edu	36	3	121952352	121952352	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005513	exon2	c.G263A	p.R88H	.	.	.
GTF2E1	2960	broad.mit.edu	36	3	121952427	121952427	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005513	exon2	c.G338T	p.R113I	.	.	.
STXBP5L	9515	broad.mit.edu	36	3	122617454	122617454	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014980	exon26	c.C3247T	p.L1083F	.	.	.
FBXO40	51725	broad.mit.edu	36	3	122823662	122823662	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016298	exon3	c.A696C	p.T232T	.	.	.
HCLS1	3059	broad.mit.edu	36	3	122838696	122838696	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005335	exon7	c.C552T	p.H184H	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122870750	122870750	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004487	exon18	c.C9305T	p.A3102V	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122893760	122893760	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004487	exon14	c.G7126T	p.E2376X	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122896085	122896085	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004487	exon13	c.G5960A	p.R1987Q	.	.	.
PARP9	83666	broad.mit.edu	36	3	123742227	123742227	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146103	exon8	c.T1547G	p.I516S	.	.	.
PARP14	54625	broad.mit.edu	36	3	123920243	123920243	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017554	exon14	c.C4555T	p.R1519X	.	.	.
HSPBAP1	79663	broad.mit.edu	36	3	123970246	123970246	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024610	exon3	c.C424A	p.L142I	.	.	.
PDIA5	10954	broad.mit.edu	36	3	124317824	124317824	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006810	exon8	c.C598T	p.R200X	.	.	.
CCDC14	64770	broad.mit.edu	36	3	125132643	125132643	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022757	exon11	c.A1795G	p.T599A	.	.	.
KALRN	8997	broad.mit.edu	36	3	125586504	125586504	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003947	exon11	c.C1887T	p.F629F	.	.	.
KALRN	8997	broad.mit.edu	36	3	125658157	125658157	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003947	exon23	c.A3740G	p.D1247G	.	.	.
KALRN	8997	broad.mit.edu	36	3	125920740	125920740	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024660	exon60	c.C8694T	p.S2898S	.	.	.
MUC13	56667	broad.mit.edu	36	3	126115210	126115210	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033049	exon7	c.C970T	p.R324W	.	.	.
HEG1	57493	broad.mit.edu	36	3	126215276	126215276	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020733	exon6	c.T1837G	p.S613A	.	.	.
RAF1	5894	broad.mit.edu	36	3	12625290	12625290	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002880	exon5	c.G556A	p.D186N	.	.	.
OSBPL11	114885	broad.mit.edu	36	3	126769086	126769086	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022776	exon6	c.G710A	p.R237Q	.	.	.
TXNRD3IT1	645840	broad.mit.edu	36	3	127774041	127774041	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039783	exon3	c.G36A	p.P12P	.	.	.
CAND2	23066	broad.mit.edu	36	3	12832408	12832408	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001162499	exon9	c.C1342T	p.R448W	.	.	.
MCM2	4171	broad.mit.edu	36	3	128808251	128808251	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004526	exon6	c.C1002T	p.F334F	.	.	.
RUVBL1	8607	broad.mit.edu	36	3	129282863	129282863	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003707	exon11	c.G1291A	p.E431K	.	.	.
EEFSEC	60678	broad.mit.edu	36	3	129448547	129448547	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021937	exon2	c.G495T	p.K165N	.	.	.
DNAJB8	165721	broad.mit.edu	36	3	129664517	129664517	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153330	exon3	c.G262A	p.D88N	.	.	.
RAB43	339122	broad.mit.edu	36	3	130347389	130347389	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199469	exon6	c.C205T	p.R69X	.	.	.
COPG	22820	broad.mit.edu	36	3	130457635	130457635	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016128	exon8	c.G527A	p.R176H	.	.	.
COL6A5	256076	broad.mit.edu	36	3	131657044	131657044	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153264	exon37	c.G6634T	p.E2212X	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131764646	131764646	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102608	exon2	c.C109T	p.R37C	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131769913	131769913	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102608	exon5	c.C2176A	p.L726I	.	.	.
PIK3R4	30849	broad.mit.edu	36	3	131892168	131892168	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014602	exon14	c.G3119A	p.R1040Q	.	.	.
ATP2C1	27032	broad.mit.edu	36	3	132180884	132180884	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199183	exon18	c.A1624G	p.T542A	.	.	.
CPNE4	131034	broad.mit.edu	36	3	132783116	132783116	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130808	exon9	c.C864G	p.C288W	.	.	.
ACAD11	84129	broad.mit.edu	36	3	133821065	133821065	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032169	exon10	c.C1212A	p.F404L	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1342502	1342502	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014461	exon9	c.C950A	p.P317H	.	.	.
TOPBP1	11073	broad.mit.edu	36	3	134844880	134844880	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007027	exon12	c.G1875C	p.L625F	.	.	.
TF	7018	broad.mit.edu	36	3	134950029	134950029	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001063	exon2	c.G127A	p.D43N	.	.	.
TF	7018	broad.mit.edu	36	3	134956098	134956098	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001063	exon4	c.G395A	p.R132Q	.	.	.
RAB6B	51560	broad.mit.edu	36	3	135041117	135041117	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016577	exon5	c.C324T	p.I108I	.	.	.
SLCO2A1	6578	broad.mit.edu	36	3	135148868	135148868	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005630	exon9	c.C1217T	p.T406I	.	.	.
CEP63	80254	broad.mit.edu	36	3	135751736	135751736	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042383	exon10	c.G1186A	p.E396K	.	.	.
STAG1	10274	broad.mit.edu	36	3	137701805	137701805	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005862	exon9	c.C852T	p.I284I	.	.	.
STAG1	10274	broad.mit.edu	36	3	137722898	137722898	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005862	exon7	c.C523T	p.R175C	.	.	.
TMEM22	80723	broad.mit.edu	36	3	138056556	138056556	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001097599	exon2	c.A564C	p.I188I	.	.	.
ESYT3	83850	broad.mit.edu	36	3	139666025	139666025	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031913	exon9	c.C1064A	p.P355H	.	.	.
ESYT3	83850	broad.mit.edu	36	3	139671639	139671639	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031913	exon16	c.C1551A	p.F517L	.	.	.
COPB2	9276	broad.mit.edu	36	3	140580627	140580627	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004766	exon4	c.C307T	p.R103C	.	.	.
XPC	7508	broad.mit.edu	36	3	14181407	14181407	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145769	exon7	c.A699C	p.E233D	.	.	.
XRN1	54464	broad.mit.edu	36	3	143622593	143622593	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019001	exon10	c.C1128T	p.V376V	.	.	.
SR140	23350	broad.mit.edu	36	3	144224129	144224129	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080415	exon11	c.G953T	p.R318I	.	.	.
SLC9A9	285195	broad.mit.edu	36	3	144998392	144998392	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173653	exon3	c.C422T	p.P141L	.	.	.
PLOD2	5352	broad.mit.edu	36	3	147279609	147279609	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000935	exon13	c.G1484A	p.R495Q	.	.	.
FGD5	152273	broad.mit.edu	36	3	14837331	14837331	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152536	exon1	c.C1749A	p.L583L	.	.	.
ZIC1	7545	broad.mit.edu	36	3	148611295	148611295	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003412	exon1	c.G706A	p.A236T	.	.	.
AGTR1	185	broad.mit.edu	36	3	149941861	149941861	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032049	exon3	c.T349C	p.F117L	.	.	.
CPA3	1359	broad.mit.edu	36	3	150079175	150079175	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001870	exon5	c.C424T	p.R142C	.	.	.
HLTF	6596	broad.mit.edu	36	3	150239666	150239666	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139048	exon23	c.G2656A	p.A886T	.	.	.
HLTF	6596	broad.mit.edu	36	3	150249408	150249408	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139048	exon16	c.G1688A	p.R563Q	.	.	.
HPS3	84343	broad.mit.edu	36	3	150340661	150340661	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032383	exon2	c.C398T	p.S133L	.	.	.
COMMD2	51122	broad.mit.edu	36	3	150942012	150942012	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016094	exon5	c.C586T	p.R196C	.	.	.
RNF13	11342	broad.mit.edu	36	3	151161467	151161467	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183381	exon10	c.C1032T	p.D344D	.	.	.
TSC22D2	9819	broad.mit.edu	36	3	151658974	151658974	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014779	exon4	c.C2204A	p.S735Y	.	.	.
SIAH2	6478	broad.mit.edu	36	3	151942982	151942982	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005067	exon2	c.T611C	p.V204A	.	.	.
CLRN1	7401	broad.mit.edu	36	3	152128452	152128452	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174878	exon3	c.C660T	p.D220D	.	.	.
CLRN1	7401	broad.mit.edu	36	3	152128524	152128524	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174878	exon3	c.T588G	p.F196L	.	.	.
CAPN7	23473	broad.mit.edu	36	3	15235004	15235004	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014296	exon4	c.A390C	p.K130N	.	.	.
GPR171	29909	broad.mit.edu	36	3	152399850	152399850	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013308	exon3	c.C14T	p.S5L	.	.	.
MED12L	116931	broad.mit.edu	36	3	152585550	152585550	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053002	exon34	c.C4864T	p.R1622X	.	.	.
CAPN7	23473	broad.mit.edu	36	3	15262062	15262062	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014296	exon17	c.A1890G	p.G630G	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152646312	152646312	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178822	exon4	c.G4147A	p.E1383K	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152647397	152647397	+	Missense_Mutation	SNP	C	T	T	rs35114212	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178822	exon4	c.G3062A	p.R1021Q	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152649265	152649265	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178822	exon4	c.G1194A	p.P398P	.	.	.
AADAC	13	broad.mit.edu	36	3	153028097	153028097	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001086	exon5	c.C647T	p.S216F	.	.	.
MBNL1	4154	broad.mit.edu	36	3	153645894	153645894	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207293	exon4	c.G683A	p.R228K	.	.	.
ARHGEF26	26084	broad.mit.edu	36	3	155440865	155440865	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015595	exon12	c.G2107A	p.V703I	.	.	.
HACL1	26061	broad.mit.edu	36	3	15585014	15585014	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012260	exon13	c.C1179T	p.F393F	.	.	.
PLCH1	23007	broad.mit.edu	36	3	156681893	156681893	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130960	exon23	c.G4640A	p.R1547Q	.	.	.
SLC33A1	9197	broad.mit.edu	36	3	157028813	157028813	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004733	exon6	c.T1530C	p.Y510Y	.	.	.
TIPARP	25976	broad.mit.edu	36	3	157878578	157878578	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015508	exon2	c.G398A	p.R133Q	.	.	.
LEKR1	389170	broad.mit.edu	36	3	158245928	158245928	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004316	exon13	c.C1774T	p.R592C	.	.	.
VEPH1	79674	broad.mit.edu	36	3	158628808	158628808	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167911	exon5	c.C693T	p.L231L	.	.	.
KPNA4	3840	broad.mit.edu	36	3	161736335	161736335	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002268	exon3	c.T159C	p.H53H	.	.	.
PPM1L	151742	broad.mit.edu	36	3	162162287	162162287	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139245	exon2	c.G469T	p.D157Y	.	.	.
GALNTL2	117248	broad.mit.edu	36	3	16236036	16236036	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_054110	exon7	c.C1515A	p.F505L	.	.	.
NMD3	51068	broad.mit.edu	36	3	162425446	162425446	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015938	exon3	c.A79C	p.N27H	.	.	.
NMD3	51068	broad.mit.edu	36	3	162451310	162451310	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015938	exon16	c.G1430A	p.R477Q	.	.	.
OXNAD1	92106	broad.mit.edu	36	3	16318365	16318365	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138381	exon7	c.G661A	p.E221K	.	.	.
DAZL	1618	broad.mit.edu	36	3	16613309	16613309	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001351	exon6	c.T450G	p.T150T	.	.	.
SI	6476	broad.mit.edu	36	3	166179861	166179861	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001041	exon48	c.G5467T	p.E1823X	.	.	.
SI	6476	broad.mit.edu	36	3	166250283	166250283	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001041	exon14	c.G1587A	p.P529P	.	.	.
SLITRK3	22865	broad.mit.edu	36	3	166390420	166390420	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014926	exon2	c.C893T	p.S298L	.	.	.
ZBBX	79740	broad.mit.edu	36	3	168528584	168528584	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024687	exon11	c.G702A	p.T234T	.	.	.
SERPINI2	5276	broad.mit.edu	36	3	168646901	168646901	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006217	exon8	c.C1114A	p.L372M	.	.	.
WDR49	151790	broad.mit.edu	36	3	168705882	168705882	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178824	exon13	c.G1735T	p.D579Y	.	.	.
GOLIM4	27333	broad.mit.edu	36	3	169210861	169210861	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014498	exon16	c.C1981T	p.R661X	.	.	.
PLCL2	23228	broad.mit.edu	36	3	17026514	17026514	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144382	exon3	c.G653T	p.R218I	.	.	.
MECOM	2122	broad.mit.edu	36	3	170323118	170323118	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105077	exon6	c.C550T	p.R184C	.	.	.
MYNN	55892	broad.mit.edu	36	3	170979332	170979332	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018657	exon3	c.G349T	p.D117Y	.	.	.
PLCL2	23228	broad.mit.edu	36	3	17106293	17106293	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015184	exon6	c.T2891C	p.F964S	.	.	.
GPR160	26996	broad.mit.edu	36	3	171284814	171284814	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014373	exon4	c.T360G	p.Y120X	.	.	.
SLC2A2	6514	broad.mit.edu	36	3	172205780	172205780	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000340	exon7	c.C951T	p.S317S	.	.	.
SLC2A2	6514	broad.mit.edu	36	3	172206472	172206472	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000340	exon6	c.C729A	p.P243P	.	.	.
PLD1	5337	broad.mit.edu	36	3	172938410	172938410	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130081	exon2	c.C126T	p.Y42Y	.	.	.
TBC1D5	9779	broad.mit.edu	36	3	17308469	17308469	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134380	exon15	c.C1167T	p.L389L	.	.	.
FNDC3B	64778	broad.mit.edu	36	3	173529513	173529513	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135095	exon12	c.A1332G	p.A444A	.	.	.
ECT2	1894	broad.mit.edu	36	3	173963266	173963266	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018098	exon8	c.G888T	p.K296N	.	.	.
SPATA16	83893	broad.mit.edu	36	3	174249455	174249455	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031955	exon3	c.C736A	p.L246I	.	.	.
TBL1XR1	79718	broad.mit.edu	36	3	178247800	178247800	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024665	exon9	c.A846G	p.L282L	.	.	.
TBL1XR1	79718	broad.mit.edu	36	3	178250498	178250498	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024665	exon7	c.T683C	p.V228A	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180404243	180404243	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006218	exon5	c.T1031C	p.V344A	PIK3CA,central_nervous_system,brain,Substitution - Missense,0	.	.
PIK3CA	5290	broad.mit.edu	36	3	180404995	180404995	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006218	exon6	c.G1070A	p.R357Q	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180430787	180430787	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006218	exon20	c.T2865G	p.V955V	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180434701	180434701	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006218	exon21	c.A3062G	p.Y1021C	PIK3CA,ovary,NS,Substitution - Missense,0	.	.
MFN1	55669	broad.mit.edu	36	3	180575737	180575737	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033540	exon10	c.C1011T	p.F337F	.	.	.
GNB4	59345	broad.mit.edu	36	3	180615445	180615445	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021629	exon6	c.G352A	p.D118N	.	.	.
ACTL6A	86	broad.mit.edu	36	3	180774875	180774875	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178042	exon5	c.G276T	p.E92D	.	.	.
MRPL47	57129	broad.mit.edu	36	3	180789407	180789407	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177988	exon6	c.C370A	p.L124I	.	.	.
USP13	8975	broad.mit.edu	36	3	180920442	180920442	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003940	exon7	c.G826T	p.E276X	.	.	.
PEX5L	51555	broad.mit.edu	36	3	181008164	181008164	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016559	exon14	c.C1668T	p.G556G	.	.	.
TTC14	151613	broad.mit.edu	36	3	181810998	181810998	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133462	exon12	c.G2287T	p.E763X	.	.	.
CCDC39	339829	broad.mit.edu	36	3	181855312	181855312	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181426	exon7	c.C862T	p.R288C	.	.	.
FXR1	8087	broad.mit.edu	36	3	182163542	182163542	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013438	exon13	c.C1168T	p.R390C	.	.	.
SOX2	6657	broad.mit.edu	36	3	182913444	182913444	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003106	exon1	c.A602G	p.D201G	.	.	.
LAMP3	27074	broad.mit.edu	36	3	184336247	184336247	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014398	exon5	c.G1069A	p.D357N	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184406678	184406678	+	Missense_Mutation	SNP	G	A	A	rs61750384	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015078	exon24	c.C2731T	p.R911C	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184489691	184489691	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015078	exon14	c.C1687T	p.R563C	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184497537	184497537	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015078	exon12	c.G1418A	p.G473D	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184539308	184539308	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015078	exon5	c.C460T	p.R154X	.	.	.
KLHL24	54800	broad.mit.edu	36	3	184850909	184850909	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017644	exon3	c.G71A	p.R24Q	.	.	.
KLHL24	54800	broad.mit.edu	36	3	184851016	184851016	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017644	exon3	c.C178T	p.R60C	.	.	.
HTR3C	170572	broad.mit.edu	36	3	185257412	185257412	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130770	exon5	c.C445T	p.R149X	.	.	.
HTR3E	285242	broad.mit.edu	36	3	185305324	185305324	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182589	exon4	c.C490T	p.R164C	.	.	.
ECE2	9718	broad.mit.edu	36	3	185477382	185477382	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014693	exon3	c.C489T	p.F163F	.	.	.
ECE2	9718	broad.mit.edu	36	3	185478788	185478788	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014693	exon6	c.T1097C	p.V366A	.	.	.
EIF4G1	1981	broad.mit.edu	36	3	185522231	185522231	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182917	exon9	c.G1165A	p.E389K	.	.	.
CLCN2	1181	broad.mit.edu	36	3	185558118	185558118	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004366	exon7	c.C756T	p.F252F	.	.	.
MAGEF1	64110	broad.mit.edu	36	3	185911967	185911967	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022149	exon1	c.C337A	p.L113M	.	.	.
VPS8	23355	broad.mit.edu	36	3	186115891	186115891	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009921	exon27	c.A2317C	p.I773L	.	.	.
VPS8	23355	broad.mit.edu	36	3	186130968	186130968	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009921	exon33	c.A2816C	p.Y939S	.	.	.
VPS8	23355	broad.mit.edu	36	3	186183503	186183503	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009921	exon41	c.C3512A	p.S1171Y	.	.	.
EHHADH	1962	broad.mit.edu	36	3	186393046	186393046	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166415	exon7	c.C1546T	p.R516C	.	.	.
MAP3K13	9175	broad.mit.edu	36	3	186673558	186673558	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004721	exon11	c.G1745A	p.S582N	.	.	.
MAP3K13	9175	broad.mit.edu	36	3	186673679	186673679	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004721	exon11	c.C1866A	p.H622Q	.	.	.
ETV5	2119	broad.mit.edu	36	3	187257936	187257936	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004454	exon10	c.G1009A	p.D337N	.	.	.
TBCCD1	55171	broad.mit.edu	36	3	187754883	187754883	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134415	exon6	c.C1398A	p.F466L	.	.	.
HRG	3273	broad.mit.edu	36	3	187869520	187869520	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000412	exon2	c.C286T	p.R96C	.	.	.
HRG	3273	broad.mit.edu	36	3	187873296	187873296	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000412	exon5	c.C585T	p.F195F	.	.	.
RFC4	5984	broad.mit.edu	36	3	187998088	187998088	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002916	exon4	c.C220A	p.L74I	.	.	.
RTP1	132112	broad.mit.edu	36	3	188400437	188400437	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153708	exon2	c.C677T	p.S226L	.	.	.
SST	6750	broad.mit.edu	36	3	188869635	188869635	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001048	exon2	c.G263T	p.R88I	.	.	.
TP63	8626	broad.mit.edu	36	3	191008961	191008961	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114980	exon2	c.C249T	p.F83F	.	.	.
LEPREL1	55214	broad.mit.edu	36	3	191172383	191172383	+	Nonsense_Mutation	SNP	G	A	A	rs35067805	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134418	exon12	c.C1264T	p.R422X	.	.	.
OSTN	344901	broad.mit.edu	36	3	192419402	192419402	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198184	exon2	c.A275G	p.D92G	.	.	.
CCDC50	152137	broad.mit.edu	36	3	192570438	192570438	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174908	exon5	c.G367A	p.E123K	.	.	.
KCNH8	131096	broad.mit.edu	36	3	19454734	19454734	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144633	exon8	c.C1252T	p.R418X	.	.	.
OPA1	4976	broad.mit.edu	36	3	194815286	194815286	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130832	exon2	c.G113A	p.R38Q	.	.	.
ATP13A3	79572	broad.mit.edu	36	3	195643431	195643431	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024524	exon15	c.C1608T	p.S536S	.	.	.
LSG1	55341	broad.mit.edu	36	3	195844115	195844115	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018385	exon14	c.C1948T	p.R650C	.	.	.
PCYT1A	5130	broad.mit.edu	36	3	197458660	197458660	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005017	exon6	c.C461T	p.T154I	.	.	.
TM4SF19	116211	broad.mit.edu	36	3	197535133	197535133	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138461	exon5	c.T582C	p.H194H	.	.	.
UBXN7	26043	broad.mit.edu	36	3	197603155	197603155	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015562	exon5	c.G394A	p.D132N	.	.	.
C3orf34	84984	broad.mit.edu	36	3	197919066	197919066	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032898	exon3	c.C257T	p.S86L	.	.	.
PIGX	54965	broad.mit.edu	36	3	197945147	197945147	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017861	exon6	c.A754C	p.K252Q	.	.	.
SENP5	205564	broad.mit.edu	36	3	198097173	198097173	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152699	exon2	c.C724T	p.R242W	.	.	.
DLG1	1739	broad.mit.edu	36	3	198405736	198405736	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004087	exon5	c.A440C	p.N147T	.	.	.
FYTTD1	84248	broad.mit.edu	36	3	198967808	198967808	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011537	exon3	c.G140A	p.G47E	.	.	.
LRCH3	84859	broad.mit.edu	36	3	199031656	199031656	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032773	exon4	c.G598T	p.D200Y	.	.	.
IQCG	84223	broad.mit.edu	36	3	199155207	199155207	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032263	exon4	c.A121G	p.T41A	.	.	.
KAT2B	8850	broad.mit.edu	36	3	20142470	20142470	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003884	exon10	c.G1483T	p.E495X	.	.	.
KAT2B	8850	broad.mit.edu	36	3	20142581	20142581	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003884	exon10	c.G1594T	p.E532X	.	.	.
KAT2B	8850	broad.mit.edu	36	3	20156729	20156729	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003884	exon13	c.G1873T	p.E625X	.	.	.
SGOL1	151648	broad.mit.edu	36	3	20177656	20177656	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199256	exon8	c.C824T	p.S275L	.	.	.
NR1D2	9975	broad.mit.edu	36	3	23981542	23981542	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005126	exon6	c.C1217T	p.S406L	.	.	.
THRB	7068	broad.mit.edu	36	3	24206755	24206755	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000461	exon4	c.T97C	p.S33P	.	.	.
RARB	5915	broad.mit.edu	36	3	25477739	25477739	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000965	exon2	c.C209A	p.S70Y	.	.	.
NGLY1	55768	broad.mit.edu	36	3	25753850	25753850	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145294	exon6	c.C856T	p.R286C	.	.	.
OXSM	54995	broad.mit.edu	36	3	25808224	25808224	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017897	exon2	c.G709A	p.D237N	.	.	.
EOMES	8320	broad.mit.edu	36	3	27736754	27736754	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005442	exon2	c.C948T	p.F316F	.	.	.
IL5RA	3568	broad.mit.edu	36	3	3118430	3118430	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000564	exon6	c.G313A	p.D105N	.	.	.
IL5RA	3568	broad.mit.edu	36	3	3119448	3119448	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000564	exon5	c.C139A	p.L47I	.	.	.
OSBPL10	114884	broad.mit.edu	36	3	31846547	31846547	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017784	exon4	c.G718A	p.E240K	.	.	.
CNOT10	25904	broad.mit.edu	36	3	32753976	32753976	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015442	exon13	c.G1585T	p.E529X	.	.	.
GLB1	2720	broad.mit.edu	36	3	33033241	33033241	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135602	exon11	c.A1050G	p.G350G	.	.	.
FBXL2	25827	broad.mit.edu	36	3	33381143	33381143	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171713	exon5	c.C218T	p.S73L	.	.	.
ARPP21	10777	broad.mit.edu	36	3	35738220	35738220	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016300	exon14	c.G1115A	p.R372H	.	.	.
DCLK3	85443	broad.mit.edu	36	3	36754465	36754465	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033403	exon2	c.G690T	p.E230D	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36848923	36848923	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014831	exon21	c.G7023A	p.G2341G	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36871974	36871974	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014831	exon12	c.T4111C	p.Y1371H	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36872426	36872426	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014831	exon12	c.G3659T	p.R1220I	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36873943	36873943	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014831	exon12	c.G2142A	p.E714E	.	.	.
EPM2AIP1	9852	broad.mit.edu	36	3	37007995	37007995	+	Silent	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014805	exon1	c.G1578C	p.G526G	.	.	.
EPM2AIP1	9852	broad.mit.edu	36	3	37008709	37008709	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014805	exon1	c.C864T	p.S288S	.	.	.
GOLGA4	2803	broad.mit.edu	36	3	37298666	37298666	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172713	exon4	c.G442T	p.D148Y	.	.	.
GOLGA4	2803	broad.mit.edu	36	3	37343200	37343200	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172713	exon15	c.G4885A	p.E1629K	.	.	.
CHL1	10752	broad.mit.edu	36	3	377097	377097	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006614	exon12	c.T1296C	p.I432I	.	.	.
SLC22A14	9389	broad.mit.edu	36	3	38332166	38332166	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004803	exon8	c.T1492C	p.F498L	.	.	.
XYLB	9942	broad.mit.edu	36	3	38379474	38379474	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005108	exon4	c.G253A	p.D85N	.	.	.
ACVR2B	93	broad.mit.edu	36	3	38494426	38494426	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001106	exon3	c.G331A	p.E111K	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38567413	38567413	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099405	exon27	c.C5400T	p.A1800A	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38567887	38567887	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099405	exon27	c.C4926T	p.I1642I	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38570799	38570799	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099405	exon26	c.C4734T	p.F1578F	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38603908	38603908	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099405	exon15	c.G2423A	p.R808H	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38614282	38614282	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099405	exon14	c.C2204T	p.A735V	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38787849	38787849	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006514	exon4	c.G524T	p.R175I	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38867119	38867119	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014139	exon25	c.A4184C	p.K1395T	.	.	.
GORASP1	64689	broad.mit.edu	36	3	39117264	39117264	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031899	exon5	c.G544A	p.A182T	.	.	.
TTC21A	199223	broad.mit.edu	36	3	39153413	39153413	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105513	exon23	c.G2992A	p.E998K	.	.	.
XIRP1	165904	broad.mit.edu	36	3	39202656	39202656	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194293	exon2	c.A3285C	p.K1095N	.	.	.
CX3CR1	1524	broad.mit.edu	36	3	39282673	39282673	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171174	exon2	c.T428C	p.I143T	.	.	.
CCR8	1237	broad.mit.edu	36	3	39349190	39349190	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005201	exon2	c.T364C	p.F122L	.	.	.
ZNF619	285267	broad.mit.edu	36	3	40503603	40503603	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145083	exon4	c.G466T	p.E156X	.	.	.
ZNF619	285267	broad.mit.edu	36	3	40504114	40504114	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145083	exon4	c.A977C	p.K326T	.	.	.
ZNF621	285268	broad.mit.edu	36	3	40549197	40549197	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098414	exon5	c.G932T	p.R311I	.	.	.
ZNF621	285268	broad.mit.edu	36	3	40549266	40549266	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098414	exon5	c.T1001G	p.F334C	.	.	.
CTNNB1	1499	broad.mit.edu	36	3	41241082	41241082	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098210	exon3	c.G75A	p.W25X	CTNNB1,stomach,NS,Substitution - Missense,+1	.	.
ULK4	54986	broad.mit.edu	36	3	41698123	41698123	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017886	exon29	c.G2858A	p.R953Q	.	.	.
CCDC13	152206	broad.mit.edu	36	3	42773681	42773681	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144719	exon3	c.G251A	p.R84Q	.	.	.
CYP8B1	1582	broad.mit.edu	36	3	42892236	42892236	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004391	exon1	c.G77A	p.R26Q	.	.	.
C3orf39	84892	broad.mit.edu	36	3	43097153	43097153	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032806	exon2	c.G775A	p.V259I	.	.	.
C3orf39	84892	broad.mit.edu	36	3	43097322	43097322	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032806	exon2	c.C606A	p.H202Q	.	.	.
ABHD5	51099	broad.mit.edu	36	3	43718918	43718918	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016006	exon3	c.G341A	p.R114Q	.	.	.
ZNF445	353274	broad.mit.edu	36	3	44463747	44463747	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181489	exon8	c.G2420A	p.R807Q	.	.	.
ZNF167	55888	broad.mit.edu	36	3	44587654	44587654	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018651	exon6	c.G2048T	p.R683I	.	.	.
ZNF502	91392	broad.mit.edu	36	3	44738894	44738894	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033210	exon4	c.C1581A	p.F527L	.	.	.
ZDHHC3	51304	broad.mit.edu	36	3	44975753	44975753	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135179	exon2	c.C180T	p.F60F	.	.	.
FYCO1	79443	broad.mit.edu	36	3	45947747	45947747	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024513	exon16	c.C4071T	p.I1357I	.	.	.
CCR1	1230	broad.mit.edu	36	3	46220024	46220024	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001295	exon2	c.C785A	p.S262Y	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4662281	4662281	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099952	exon10	c.C724T	p.L242L	.	.	.
SETD2	29072	broad.mit.edu	36	3	47133136	47133136	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014159	exon4	c.C4567T	p.R1523C	.	.	.
SCAP	22937	broad.mit.edu	36	3	47442512	47442512	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012235	exon7	c.G889A	p.A297T	.	.	.
CDC25A	993	broad.mit.edu	36	3	48194378	48194378	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001789	exon7	c.C654T	p.F218F	CDC25A,kidney,NS,Substitution - Missense,-2	.	.
ITPR1	3708	broad.mit.edu	36	3	4828086	4828086	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099952	exon53	c.C7266A	p.F2422L	.	.	.
ZNF589	51385	broad.mit.edu	36	3	48284686	48284686	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016089	exon4	c.C501A	p.F167L	.	.	.
CCDC51	79714	broad.mit.edu	36	3	48449455	48449455	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024661	exon4	c.G603T	p.K201N	.	.	.
COL7A1	1294	broad.mit.edu	36	3	48590951	48590951	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000094	exon63	c.G5426T	p.G1809V	.	.	.
SLC25A20	788	broad.mit.edu	36	3	48891848	48891848	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000387	exon4	c.G364A	p.V122I	.	.	.
ARIH2	10425	broad.mit.edu	36	3	48986199	48986199	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006321	exon9	c.G834T	p.T278T	.	.	.
QARS	5859	broad.mit.edu	36	3	49110491	49110491	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005051	exon23	c.G2215A	p.D739N	.	.	.
USP19	10869	broad.mit.edu	36	3	49126507	49126507	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199162	exon17	c.G2391T	p.E797D	.	.	.
BSN	8927	broad.mit.edu	36	3	49655360	49655360	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003458	exon3	c.C1289T	p.P430L	.	.	.
BSN	8927	broad.mit.edu	36	3	49668642	49668642	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003458	exon5	c.C6649T	p.R2217W	.	.	.
CAMKV	79012	broad.mit.edu	36	3	49873732	49873732	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024046	exon6	c.G447T	p.E149D	.	.	.
BHLHE40	8553	broad.mit.edu	36	3	4997090	4997090	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003670	exon3	c.T255G	p.L85L	.	.	.
CACNA2D2	9254	broad.mit.edu	36	3	50391972	50391972	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006030	exon11	c.T1047C	p.N349N	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51290167	51290167	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004947	exon26	c.C2724T	p.I908I	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51345660	51345660	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004947	exon35	c.C3506T	p.A1169V	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52402509	52402509	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015512	exon66	c.C10594T	p.R3532C	.	.	.
PBRM1	55193	broad.mit.edu	36	3	52573150	52573150	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018313	exon24	c.T3756G	p.F1252L	.	.	.
NEK4	6787	broad.mit.edu	36	3	52772528	52772528	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193533	exon4	c.G552T	p.K184N	.	.	.
ITIH3	3699	broad.mit.edu	36	3	52810038	52810038	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002217	exon11	c.A1219C	p.K407Q	.	.	.
SFMBT1	51460	broad.mit.edu	36	3	52916218	52916218	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005158	exon20	c.A2238C	p.I746I	.	.	.
CACNA1D	776	broad.mit.edu	36	3	53817752	53817752	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128839	exon44	c.G5714A	p.R1905H	.	.	.
CACNA2D3	55799	broad.mit.edu	36	3	54636883	54636883	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018398	exon10	c.C993T	p.F331F	.	.	.
LRTM1	57408	broad.mit.edu	36	3	54933852	54933852	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020678	exon2	c.G438T	p.E146D	.	.	.
ERC2	26059	broad.mit.edu	36	3	56444000	56444000	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015576	exon2	c.C76T	p.R26C	.	.	.
C3orf63	23272	broad.mit.edu	36	3	56642910	56642910	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001112736	exon18	c.C2949G	p.D983E	.	.	.
C3orf63	23272	broad.mit.edu	36	3	56655758	56655758	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001112736	exon14	c.G2047T	p.E683X	.	.	.
APPL1	26060	broad.mit.edu	36	3	57258535	57258535	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012096	exon11	c.A971G	p.D324G	.	.	.
PDE12	201626	broad.mit.edu	36	3	57518437	57518437	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177966	exon1	c.A1291G	p.R431G	.	.	.
FLNB	2317	broad.mit.edu	36	3	58084083	58084084	+	Missense_Mutation	DNP	AC	TT	TT	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164317	exon21	c.3350_3351TT	.	.	.	.
FLNB	2317	broad.mit.edu	36	3	58093695	58093695	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164317	exon27	c.G4604A	p.R1535H	.	.	.
PDHB	5162	broad.mit.edu	36	3	58392691	58392691	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000925	exon3	c.G157A	p.V53I	.	.	.
FAM3D	131177	broad.mit.edu	36	3	58597121	58597121	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138805	exon9	c.C525T	p.F175F	.	.	.
PTPRG	5793	broad.mit.edu	36	3	62253251	62253251	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002841	exon29	c.C4171T	p.P1391S	.	.	.
CADPS	8618	broad.mit.edu	36	3	62438993	62438993	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183393	exon20	c.C3075T	p.I1025I	.	.	.
CADPS	8618	broad.mit.edu	36	3	62606475	62606475	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183393	exon6	c.G1287T	p.E429D	.	.	.
CADPS	8618	broad.mit.edu	36	3	62623072	62623072	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183393	exon4	c.G926A	p.R309Q	.	.	.
CADPS	8618	broad.mit.edu	36	3	62714302	62714302	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183393	exon3	c.G742A	p.E248K	.	.	.
ATXN7	6314	broad.mit.edu	36	3	63940720	63940720	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177387	exon5	c.G589A	p.G197R	.	.	.
PRICKLE2	166336	broad.mit.edu	36	3	64060486	64060486	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198859	exon8	c.C1816T	p.R606C	.	.	.
ADAMTS9	56999	broad.mit.edu	36	3	64511640	64511640	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182920	exon31	c.G4837A	p.E1613K	.	.	.
ADAMTS9	56999	broad.mit.edu	36	3	64583231	64583231	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182920	exon17	c.C2461T	p.R821C	.	.	.
KBTBD8	84541	broad.mit.edu	36	3	67141038	67141038	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032505	exon4	c.G1345T	p.E449X	.	.	.
TMF1	7110	broad.mit.edu	36	3	69170533	69170533	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007114	exon8	c.G2023A	p.A675T	.	.	.
TMF1	7110	broad.mit.edu	36	3	69175652	69175652	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007114	exon4	c.G1517T	p.R506I	.	.	.
ARL6IP5	10550	broad.mit.edu	36	3	69233822	69233822	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006407	exon2	c.T319C	p.L107L	.	.	.
LMOD3	56203	broad.mit.edu	36	3	69251166	69251166	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198271	exon2	c.C1030T	p.R344W	.	.	.
GXYLT2	727936	broad.mit.edu	36	3	73106836	73106836	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080393	exon7	c.C1168A	p.L390I	.	.	.
GRM7	2917	broad.mit.edu	36	3	7696965	7696965	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000844	exon9	c.A2681C	p.E894A	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77229916	77229916	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128929	exon1	c.C64T	p.R22C	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77749463	77749463	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002942	exon22	c.C3403T	p.R1135X	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78793062	78793062	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002941	exon16	c.C2128A	p.L710I	.	.	.
LMCD1	29995	broad.mit.edu	36	3	8549502	8549502	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014583	exon2	c.A122C	p.H41P	.	.	.
LMCD1	29995	broad.mit.edu	36	3	8553904	8553904	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014583	exon3	c.G165A	p.E55E	.	.	.
CADM2	253559	broad.mit.edu	36	3	86044235	86044235	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167674	exon5	c.G525T	p.E175D	.	.	.
CADM2	253559	broad.mit.edu	36	3	86093394	86093394	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167674	exon7	c.C850A	p.L284I	.	.	.
OXTR	5021	broad.mit.edu	36	3	8769818	8769818	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000916	exon4	c.G1015A	p.E339K	.	.	.
PROS1	5627	broad.mit.edu	36	3	95102455	95102455	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000313	exon7	c.G610T	p.E204X	.	.	.
MTMR14	64419	broad.mit.edu	36	3	9694030	9694030	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022485	exon8	c.C781T	p.R261W	.	.	.
CAMK1	8536	broad.mit.edu	36	3	9779710	9779710	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003656	exon5	c.G317A	p.R106H	.	.	.
OR5H2	79310	broad.mit.edu	36	3	99484488	99484488	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005482	exon1	c.A67G	p.T23A	.	.	.
OR5K4	403278	broad.mit.edu	36	3	99555480	99555480	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005517	exon1	c.C93A	p.F31L	.	.	.
OR5K1	26339	broad.mit.edu	36	3	99671654	99671654	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004736	exon1	c.C544T	p.L182F	.	.	.
TMEM111	55831	broad.mit.edu	36	3	9980795	9980795	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018447	exon8	c.C744T	p.F248F	.	.	.
ST3GAL6	10402	broad.mit.edu	36	3	99975465	99975465	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006100	exon6	c.C283T	p.R95X	.	.	.
UTP20	27340	broad.mit.edu	36	12	100262626	100262626	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014503	exon36	c.G4572T	p.E1524D	.	.	.
UTP20	27340	broad.mit.edu	36	12	100274910	100274910	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014503	exon43	c.G5610A	p.A1870A	.	.	.
UTP20	27340	broad.mit.edu	36	12	100279887	100279887	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014503	exon44	c.T5708G	p.F1903C	.	.	.
UTP20	27340	broad.mit.edu	36	12	100293566	100293566	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014503	exon56	c.C7297T	p.R2433C	.	.	.
UTP20	27340	broad.mit.edu	36	12	100301175	100301175	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014503	exon59	c.C7882T	p.R2628W	.	.	.
SPIC	121599	broad.mit.edu	36	12	100404566	100404566	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152323	exon5	c.C633A	p.I211I	.	.	.
GNPTAB	79158	broad.mit.edu	36	12	100679177	100679177	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024312	exon15	c.T2994G	p.F998L	.	.	.
ERC1	23085	broad.mit.edu	36	12	1007842	1007842	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178039	exon2	c.A512G	p.D171G	.	.	.
C12orf48	55010	broad.mit.edu	36	12	101066299	101066299	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017915	exon3	c.A315C	p.L105F	.	.	.
TDG	6996	broad.mit.edu	36	12	102904879	102904879	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003211	exon10	c.G1114A	p.E372K	.	.	.
TXNRD1	7296	broad.mit.edu	36	12	103237460	103237460	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182743	exon6	c.G506A	p.G169D	.	.	.
CHST11	50515	broad.mit.edu	36	12	103675680	103675680	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001173982	exon3	c.A1013G	p.Y338C	.	.	.
KLRK1	22914	broad.mit.edu	36	12	10430829	10430829	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199805	exon8	c.T88G	p.F30V	.	.	.
KLRC4	8302	broad.mit.edu	36	12	10451565	10451565	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013431	exon4	c.G431T	p.R144I	.	.	.
KLRC1	3821	broad.mit.edu	36	12	10493145	10493145	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213658	exon6	c.G447A	p.S149S	.	.	.
NUAK1	9891	broad.mit.edu	36	12	104988726	104988726	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014840	exon6	c.G788A	p.R263Q	.	.	.
PWP1	11137	broad.mit.edu	36	12	106622566	106622566	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007062	exon11	c.G989A	p.R330Q	.	.	.
ISCU	23479	broad.mit.edu	36	12	107485130	107485130	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213595	exon4	c.C374T	p.S125L	.	.	.
KCTD10	83892	broad.mit.edu	36	12	108380192	108380192	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031954	exon4	c.G462A	p.A154A	.	.	.
KCTD10	83892	broad.mit.edu	36	12	108382937	108382937	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031954	exon3	c.C274T	p.R92X	.	.	.
TAS2R9	50835	broad.mit.edu	36	12	10853345	10853345	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023917	exon1	c.C597A	p.F199L	.	.	.
TAS2R9	50835	broad.mit.edu	36	12	10853705	10853705	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023917	exon1	c.C237T	p.S79S	.	.	.
TRPV4	59341	broad.mit.edu	36	12	108725198	108725198	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021625	exon4	c.C693A	p.F231L	.	.	.
GIT2	9815	broad.mit.edu	36	12	108869667	108869667	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135214	exon15	c.C1418T	p.S473L	.	.	.
ATP2A2	488	broad.mit.edu	36	12	109218811	109218811	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170665	exon5	c.G349A	p.E117K	.	.	.
ATP2A2	488	broad.mit.edu	36	12	109262940	109262940	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170665	exon14	c.C1855T	p.R619W	.	.	.
PPP1CC	5501	broad.mit.edu	36	12	109652787	109652787	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002710	exon3	c.G348T	p.E116D	.	.	.
PRH2	5555	broad.mit.edu	36	12	10974146	10974146	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005042	exon2	c.G76T	p.E26X	.	.	.
TAS2R14	50840	broad.mit.edu	36	12	10982897	10982897	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023922	exon1	c.T177G	p.V59V	.	.	.
CUX2	23316	broad.mit.edu	36	12	110136467	110136467	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015267	exon2	c.C144T	p.L48L	.	.	.
TAS2R50	259296	broad.mit.edu	36	12	11029905	11029905	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176890	exon1	c.C822T	p.F274F	.	.	.
TAS2R50	259296	broad.mit.edu	36	12	11029984	11029984	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176890	exon1	c.C743T	p.S248L	.	.	.
TMEM116	89894	broad.mit.edu	36	12	110856176	110856176	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138341	exon8	c.G354T	p.V118V	.	.	.
NAA25	80018	broad.mit.edu	36	12	110964246	110964246	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024953	exon20	c.C2420A	p.S807Y	.	.	.
RPL6	6128	broad.mit.edu	36	12	111328176	111328176	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024662	exon6	c.T578G	p.F193C	.	.	.
RPH3A	22895	broad.mit.edu	36	12	111801336	111801336	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014954	exon13	c.C1189T	p.L397F	.	.	.
OAS3	4940	broad.mit.edu	36	12	111883350	111883350	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006187	exon8	c.C1749T	p.F583F	.	.	.
RBM19	9904	broad.mit.edu	36	12	112881448	112881448	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016196	exon5	c.G523A	p.D175N	.	.	.
MED13L	23389	broad.mit.edu	36	12	114930910	114930910	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015335	exon10	c.G1691A	p.R564Q	.	.	.
NOS1	4842	broad.mit.edu	36	12	116233687	116233687	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000620	exon3	c.C819T	p.V273V	.	.	.
TAOK3	51347	broad.mit.edu	36	12	117121409	117121409	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016281	exon13	c.G1024T	p.D342Y	.	.	.
CIT	11113	broad.mit.edu	36	12	118656392	118656392	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007174	exon25	c.C3184T	p.R1062X	.	.	.
GCN1L1	10985	broad.mit.edu	36	12	119086632	119086632	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006836	exon18	c.T1739C	p.V580A	.	.	.
GCN1L1	10985	broad.mit.edu	36	12	119086838	119086838	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006836	exon17	c.A1683C	p.K561N	.	.	.
SIRT4	23409	broad.mit.edu	36	12	119234691	119234691	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012240	exon3	c.G547T	p.E183X	.	.	.
PLA2G1B	5319	broad.mit.edu	36	12	119249920	119249920	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000928	exon1	c.C20T	p.A7V	.	.	.
POP5	51367	broad.mit.edu	36	12	119501714	119501714	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015918	exon4	c.A383C	p.N128T	.	.	.
POP5	51367	broad.mit.edu	36	12	119501780	119501780	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015918	exon4	c.C317T	p.T106I	.	.	.
SPPL3	121665	broad.mit.edu	36	12	119689631	119689631	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139015	exon9	c.C922T	p.R308C	.	.	.
WDR66	144406	broad.mit.edu	36	12	120922198	120922198	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144668	exon20	c.G3200A	p.R1067Q	.	.	.
CLIP1	6249	broad.mit.edu	36	12	121427977	121427977	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198240	exon3	c.A569C	p.K190T	.	.	.
KNTC1	9735	broad.mit.edu	36	12	121641224	121641224	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014708	exon41	c.G4117A	p.D1373N	.	.	.
LRP6	4040	broad.mit.edu	36	12	12208502	12208502	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002336	exon9	c.G2024A	p.R675Q	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122840475	122840475	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207437	exon11	c.A1486G	p.T496A	.	.	.
LRP6	4040	broad.mit.edu	36	12	12288605	12288605	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002336	exon2	c.G307T	p.D103Y	.	.	.
CCDC92	80212	broad.mit.edu	36	12	122987882	122987882	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025140	exon5	c.C672T	p.F224F	.	.	.
TMEM132B	114795	broad.mit.edu	36	12	124694624	124694624	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052907	exon6	c.G1472A	p.S491N	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128124645	128124645	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133448	exon9	c.A3028C	p.K1010Q	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128124930	128124930	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133448	exon9	c.G2743A	p.D915N	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129464634	129464634	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015347	exon14	c.C2641A	p.Q881K	.	.	.
GPR133	283383	broad.mit.edu	36	12	130127355	130127355	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198827	exon14	c.C1530T	p.C510C	.	.	.
EP400	57634	broad.mit.edu	36	12	131113017	131113017	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015409	exon47	c.C8149A	p.L2717I	.	.	.
KIAA1467	57613	broad.mit.edu	36	12	13124166	13124166	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020853	exon12	c.C1819T	p.R607X	.	.	.
POLE	5426	broad.mit.edu	36	12	131736368	131736368	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006231	exon30	c.T3763G	p.L1255V	.	.	.
POLE	5426	broad.mit.edu	36	12	131760362	131760362	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006231	exon13	c.G1231T	p.V411L	.	.	.
ANKLE2	23141	broad.mit.edu	36	12	131841541	131841541	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015114	exon2	c.C433A	p.P145T	.	.	.
ZNF26	7574	broad.mit.edu	36	12	132097208	132097208	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019591	exon4	c.C670T	p.H224Y	.	.	.
GRIN2B	2904	broad.mit.edu	36	12	13797969	13797969	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000834	exon3	c.C559T	p.R187C	.	.	.
GRIN2B	2904	broad.mit.edu	36	12	13798062	13798062	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000834	exon3	c.G466A	p.V156I	.	.	.
GUCY2C	2984	broad.mit.edu	36	12	14685343	14685343	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004963	exon18	c.G2008A	p.A670T	.	.	.
ART4	420	broad.mit.edu	36	12	14885024	14885024	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021071	exon2	c.T475G	p.L159V	.	.	.
PTPRO	5800	broad.mit.edu	36	12	15528219	15528219	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002848	exon2	c.C120T	p.I40I	.	.	.
SLCO1B3	28234	broad.mit.edu	36	12	20919573	20919573	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019844	exon8	c.G865T	p.E289X	.	.	.
SLCO1B1	10599	broad.mit.edu	36	12	21261425	21261425	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006446	exon12	c.T1603C	p.Y535H	.	.	.
GYS2	2998	broad.mit.edu	36	12	21604599	21604599	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021957	exon8	c.G1157A	p.R386Q	.	.	.
CMAS	55907	broad.mit.edu	36	12	22099418	22099418	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018686	exon2	c.G329A	p.R110Q	.	.	.
LRMP	4033	broad.mit.edu	36	12	25148563	25148563	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006152	exon19	c.C1048T	p.R350C	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004985	exon2	c.G38A	p.G13D	KRAS,lung,NS,Substitution - Missense,-1	.	.
CACNA1C	775	broad.mit.edu	36	12	2562274	2562274	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001129842	exon15	c.C2129T	p.S710L	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2565305	2565305	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001129842	exon18	c.G2504A	p.S835N	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2576917	2576917	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001129835	exon21	c.C2847A	p.I949I	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26384495	26384495	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002223	exon56	c.G7891A	p.A2631T	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26521117	26521117	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002223	exon44	c.G6214T	p.E2072X	.	.	.
FGFR1OP2	26127	broad.mit.edu	36	12	27004718	27004718	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171888	exon5	c.G400T	p.D134Y	.	.	.
STK38L	23012	broad.mit.edu	36	12	27342028	27342028	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015000	exon2	c.T108G	p.I36M	.	.	.
ARNTL2	56938	broad.mit.edu	36	12	27431481	27431481	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020183	exon7	c.C618T	p.F206F	.	.	.
KDM5A	5927	broad.mit.edu	36	12	276552	276552	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042603	exon25	c.G4150A	p.E1384K	.	.	.
OVCH1	341350	broad.mit.edu	36	12	29489517	29489517	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183378	exon23	c.G2842A	p.G948S	.	.	.
OVCH1	341350	broad.mit.edu	36	12	29540857	29540857	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183378	exon2	c.C82T	p.R28C	.	.	.
IPO8	10526	broad.mit.edu	36	12	30681219	30681219	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006390	exon22	c.C2659T	p.R887C	.	.	.
CAPRIN2	65981	broad.mit.edu	36	12	30760841	30760841	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002259	exon14	c.G2332T	p.E778X	.	.	.
CAPRIN2	65981	broad.mit.edu	36	12	30773424	30773424	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002259	exon8	c.C1207T	p.R403C	.	.	.
CAPRIN2	65981	broad.mit.edu	36	12	30797928	30797928	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002259	exon1	c.G37A	p.E13K	.	.	.
C12orf35	55196	broad.mit.edu	36	12	32027396	32027396	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018169	exon4	c.C2240T	p.S747F	.	.	.
C12orf35	55196	broad.mit.edu	36	12	32029547	32029547	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018169	exon4	c.C4391T	p.S1464L	.	.	.
DNM1L	10059	broad.mit.edu	36	12	32782486	32782486	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012062	exon16	c.G1696T	p.E566X	.	.	.
ALG10	84920	broad.mit.edu	36	12	34068168	34068168	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032834	exon2	c.A176G	p.D59G	.	.	.
ALG10	84920	broad.mit.edu	36	12	34070716	34070716	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032834	exon3	c.A1021G	p.T341A	.	.	.
CPNE8	144402	broad.mit.edu	36	12	37442219	37442219	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153634	exon9	c.G642T	p.K214N	.	.	.
CPNE8	144402	broad.mit.edu	36	12	37520016	37520016	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153634	exon5	c.T299C	p.V100A	.	.	.
CPNE8	144402	broad.mit.edu	36	12	37528638	37528638	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153634	exon4	c.C280T	p.R94C	.	.	.
KIF21A	55605	broad.mit.edu	36	12	38031904	38031904	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001173465	exon11	c.G1615A	p.D539N	.	.	.
ABCD2	225	broad.mit.edu	36	12	38280652	38280652	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005164	exon6	c.A1634G	p.Y545C	.	.	.
C12orf40	283461	broad.mit.edu	36	12	38330396	38330396	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031748	exon7	c.T659C	p.F220S	.	.	.
SLC2A13	114134	broad.mit.edu	36	12	38444578	38444578	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052885	exon9	c.C1671T	p.V557V	.	.	.
LRRK2	120892	broad.mit.edu	36	12	38918134	38918134	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198578	exon5	c.A533G	p.K178R	.	.	.
LRRK2	120892	broad.mit.edu	36	12	38929924	38929924	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198578	exon8	c.G868A	p.E290K	.	.	.
LRRK2	120892	broad.mit.edu	36	12	38933023	38933023	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198578	exon11	c.C1226T	p.S409F	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39705376	39705376	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175038	exon20	c.A2648G	p.D883G	.	.	.
PDZRN4	29951	broad.mit.edu	36	12	40253402	40253402	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164595	exon10	c.A2554C	p.S852R	.	.	.
YAF2	10138	broad.mit.edu	36	12	40840850	40840850	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190979	exon5	c.A423C	p.E141D	.	.	.
PPHLN1	51535	broad.mit.edu	36	12	41121410	41121410	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201439	exon10	c.C936T	p.F312F	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42108863	42108863	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025003	exon25	c.G3496A	p.V1166I	.	.	.
TMEM117	84216	broad.mit.edu	36	12	42979637	42979637	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032256	exon6	c.C616A	p.L206I	.	.	.
NELL2	4753	broad.mit.edu	36	12	43202166	43202166	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145108	exon18	c.T2059G	p.F687V	.	.	.
ANO6	196527	broad.mit.edu	36	12	44096765	44096765	+	Silent	SNP	C	T	T	rs12308034	by-hapmap	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025356	exon17	c.C2028T	p.F676F	.	.	.
FGF6	2251	broad.mit.edu	36	12	4423637	4423637	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020996	exon2	c.C373T	p.R125X	.	.	.
ARID2	196528	broad.mit.edu	36	12	44497842	44497842	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152641	exon5	c.A541G	p.T181A	.	.	.
RAD51AP1	10635	broad.mit.edu	36	12	4535869	4535869	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006479	exon8	c.A811G	p.K271E	.	.	.
AMIGO2	347902	broad.mit.edu	36	12	45758445	45758445	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181847	exon2	c.G608A	p.R203Q	.	.	.
AMIGO2	347902	broad.mit.edu	36	12	45758752	45758752	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181847	exon2	c.C301T	p.R101C	.	.	.
OR10AD1	121275	broad.mit.edu	36	12	46882728	46882728	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004134	exon1	c.C615T	p.I205I	.	.	.
DDX23	9416	broad.mit.edu	36	12	47512208	47512208	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004818	exon15	c.G1984C	p.G662R	.	.	.
CCDC65	85478	broad.mit.edu	36	12	47594573	47594573	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033124	exon3	c.A420C	p.E140D	.	.	.
MLL2	8085	broad.mit.edu	36	12	47722624	47722624	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003482	exon27	c.T5854C	p.F1952L	.	.	.
LIMA1	51474	broad.mit.edu	36	12	48857242	48857242	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113546	exon11	c.G2155T	p.E719X	.	.	.
DIP2B	57609	broad.mit.edu	36	12	49360751	49360751	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173602	exon9	c.G1144A	p.A382T	.	.	.
GALNT6	11226	broad.mit.edu	36	12	50039345	50039345	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007210	exon8	c.C1206T	p.C402C	.	.	.
SCN8A	6334	broad.mit.edu	36	12	50454371	50454371	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014191	exon20	c.C3777A	p.F1259L	.	.	.
GRASP	160622	broad.mit.edu	36	12	50693788	50693788	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181711	exon5	c.C505T	p.R169X	.	.	.
KRT6C	286887	broad.mit.edu	36	12	51149314	51149314	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173086	exon9	c.C1494T	p.G498G	.	.	.
KRT6A	3853	broad.mit.edu	36	12	51172934	51172934	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005554	exon1	c.C306T	p.F102F	.	.	.
KRT5	3852	broad.mit.edu	36	12	51200027	51200027	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000424	exon1	c.C321T	p.F107F	.	.	.
KRT71	112802	broad.mit.edu	36	12	51230155	51230155	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033448	exon2	c.C581T	p.T194M	.	.	.
KRT74	121391	broad.mit.edu	36	12	51252635	51252635	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175053	exon2	c.G555T	p.K185N	.	.	.
KRT72	140807	broad.mit.edu	36	12	51267709	51267709	+	Missense_Mutation	SNP	C	T	T	rs11170183	by-cluster,by-frequency,by-2hit-2allele,by-hapmap	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146226	exon6	c.G1157A	p.R386H	.	.	.
KRT72	140807	broad.mit.edu	36	12	51279160	51279160	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146226	exon2	c.C430T	p.R144W	.	.	.
KRT73	319101	broad.mit.edu	36	12	51296375	51296375	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175068	exon2	c.G504A	p.Q168Q	.	.	.
KRT1	3848	broad.mit.edu	36	12	51356501	51356501	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006121	exon7	c.G1300A	p.E434K	.	.	.
KRT4	3851	broad.mit.edu	36	12	51487422	51487422	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002272	exon8	c.G1591A	p.A531T	.	.	.
EIF4B	1975	broad.mit.edu	36	12	51707844	51707844	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001417	exon7	c.C679T	p.R227C	.	.	.
HOXC10	3226	broad.mit.edu	36	12	52665670	52665670	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017409	exon1	c.G360A	p.A120A	.	.	.
HOXC4	3221	broad.mit.edu	36	12	52734934	52734934	+	Missense_Mutation	SNP	G	A	A	rs11835301	by-cluster,by-hapmap	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014620	exon4	c.G473A	p.R158H	.	.	.
CBX5	23468	broad.mit.edu	36	12	52932167	52932167	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127322	exon3	c.G249A	p.E83E	.	.	.
HNRNPA1	3178	broad.mit.edu	36	12	52961501	52961501	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031157	exon2	c.A80G	p.D27G	.	.	.
NFE2	4778	broad.mit.edu	36	12	52973196	52973196	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136023	exon3	c.T351C	p.S117S	.	.	.
ZNF385A	25946	broad.mit.edu	36	12	53051723	53051723	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015481	exon4	c.G405T	p.E135D	.	.	.
NCKAP1L	3071	broad.mit.edu	36	12	53222693	53222693	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184976	exon31	c.G3191A	p.R1064Q	.	.	.
PDE1B	5153	broad.mit.edu	36	12	53249235	53249235	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000924	exon4	c.G228A	p.R76R	.	.	.
PDE1B	5153	broad.mit.edu	36	12	53256743	53256743	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000924	exon14	c.G1498A	p.A500T	.	.	.
NEUROD4	58158	broad.mit.edu	36	12	53706779	53706779	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021191	exon2	c.C289T	p.R97W	.	.	.
OR9K2	441639	broad.mit.edu	36	12	53810578	53810578	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005243	exon1	c.A759G	p.I253M	.	.	.
OR6C74	254783	broad.mit.edu	36	12	53927532	53927532	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005490	exon1	c.C194A	p.S65X	.	.	.
MMP19	4327	broad.mit.edu	36	12	54517901	54517901	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002429	exon7	c.C1053T	p.F351F	.	.	.
NTF3	4908	broad.mit.edu	36	12	5473671	5473671	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102654	exon2	c.C69T	p.L23L	.	.	.
ANKRD52	283373	broad.mit.edu	36	12	54925237	54925237	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173595	exon22	c.T2409G	p.H803Q	.	.	.
RBMS2	5939	broad.mit.edu	36	12	55242566	55242566	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002898	exon2	c.A165C	p.K55N	.	.	.
BAZ2A	11176	broad.mit.edu	36	12	55280734	55280734	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013449	exon23	c.C4606T	p.R1536W	.	.	.
BAZ2A	11176	broad.mit.edu	36	12	55283468	55283468	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013449	exon18	c.T3227C	p.V1076A	.	.	.
NACA	4666	broad.mit.edu	36	12	55400812	55400812	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113203	exon3	c.T769C	p.S257P	.	.	.
SDR9C7	121214	broad.mit.edu	36	12	55614273	55614273	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148897	exon1	c.T40C	p.F14L	.	.	.
RDH16	8608	broad.mit.edu	36	12	55632244	55632244	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003708	exon4	c.G790A	p.V264M	.	.	.
ZBTB39	9880	broad.mit.edu	36	12	55684331	55684331	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014830	exon2	c.A638G	p.D213G	.	.	.
NAB2	4665	broad.mit.edu	36	12	55772006	55772006	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005967	exon2	c.C915T	p.F305F	.	.	.
ANO2	57101	broad.mit.edu	36	12	5592349	5592349	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020373	exon19	c.C1965T	p.F655F	.	.	.
GLI1	2735	broad.mit.edu	36	12	56148105	56148105	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160045	exon8	c.G755A	p.R252Q	.	.	.
MARS	4141	broad.mit.edu	36	12	56180442	56180442	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004990	exon10	c.G1163A	p.R388Q	.	.	.
MBD6	114785	broad.mit.edu	36	12	56206096	56206096	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052897	exon6	c.C1078T	p.R360C	.	.	.
MBD6	114785	broad.mit.edu	36	12	56206415	56206415	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052897	exon6	c.G1397A	p.S466N	.	.	.
DCTN2	10540	broad.mit.edu	36	12	56226078	56226078	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006400	exon2	c.G105A	p.A35A	.	.	.
LRIG3	121227	broad.mit.edu	36	12	57560904	57560904	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153377	exon13	c.G1527A	p.S509S	.	.	.
SLC16A7	9194	broad.mit.edu	36	12	58455458	58455458	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004731	exon4	c.C1115T	p.S372F	.	.	.
VWF	7450	broad.mit.edu	36	12	6089978	6089978	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000552	exon5	c.T355C	p.Y119H	.	.	.
USP15	9958	broad.mit.edu	36	12	61064163	61064163	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006313	exon10	c.G1199A	p.R400Q	.	.	.
MON2	23041	broad.mit.edu	36	12	61224999	61224999	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015026	exon21	c.T2521C	p.S841P	.	.	.
DPY19L2	283417	broad.mit.edu	36	12	62306534	62306534	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173812	exon7	c.C843A	p.F281L	.	.	.
DPY19L2	283417	broad.mit.edu	36	12	62343810	62343810	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173812	exon3	c.G445T	p.E149X	.	.	.
XPOT	11260	broad.mit.edu	36	12	63105910	63105910	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007235	exon15	c.C1621T	p.R541W	.	.	.
XPOT	11260	broad.mit.edu	36	12	63114886	63114886	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007235	exon21	c.A2615G	p.H872R	.	.	.
LEMD3	23592	broad.mit.edu	36	12	63921020	63921020	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014319	exon9	c.C2191T	p.R731C	.	.	.
LEMD3	23592	broad.mit.edu	36	12	63923510	63923510	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014319	exon10	c.C2381T	p.P794L	.	.	.
MSRB3	253827	broad.mit.edu	36	12	64143272	64143272	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193461	exon7	c.C461T	p.S154L	.	.	.
IRAK3	11213	broad.mit.edu	36	12	64908330	64908330	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142523	exon7	c.G617A	p.R206Q	.	.	.
GRIP1	23426	broad.mit.edu	36	12	65135598	65135598	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178074	exon10	c.T1056G	p.S352S	.	.	.
NOP2	4839	broad.mit.edu	36	12	6539614	6539614	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006170	exon15	c.G1688A	p.R563Q	.	.	.
CAND1	55832	broad.mit.edu	36	12	65985918	65985918	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018448	exon10	c.C2203A	p.L735I	.	.	.
ACRBP	84519	broad.mit.edu	36	12	6626308	6626308	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032489	exon2	c.A175G	p.T59A	.	.	.
IFNG	3458	broad.mit.edu	36	12	66837981	66837981	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000619	exon3	c.C345T	p.F115F	.	.	.
IL26	55801	broad.mit.edu	36	12	66905533	66905533	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018402	exon2	c.A186C	p.K62N	.	.	.
MDM2	4193	broad.mit.edu	36	12	67519440	67519440	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002392	exon11	c.A1038C	p.E346D	.	.	.
MDM2	4193	broad.mit.edu	36	12	67519885	67519885	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002392	exon11	c.T1483C	p.Y495H	.	.	.
TPI1	7167	broad.mit.edu	36	12	6848766	6848766	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000365	exon4	c.A408C	p.E136D	.	.	.
LRRC23	10233	broad.mit.edu	36	12	6893418	6893418	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006992	exon7	c.A861C	p.E287D	.	.	.
ATN1	1822	broad.mit.edu	36	12	6913609	6913609	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007026	exon3	c.A37C	p.R13R	.	.	.
TSPAN8	7103	broad.mit.edu	36	12	69809382	69809382	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004616	exon8	c.T656C	p.I219T	.	.	.
C1S	716	broad.mit.edu	36	12	7045289	7045289	+	Missense_Mutation	SNP	G	A	A	rs20573	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201442	exon10	c.G1148A	p.R383H	.	.	.
TRHDE	29953	broad.mit.edu	36	12	71149807	71149807	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013381	exon4	c.C1183A	p.L395I	.	.	.
PEX5	5830	broad.mit.edu	36	12	7253661	7253661	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001131024	exon14	c.G1565A	p.R522H	.	.	.
CD163	9332	broad.mit.edu	36	12	7525065	7525065	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203416	exon15	c.C3302A	p.S1101Y	.	.	.
CD163	9332	broad.mit.edu	36	12	7527310	7527310	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203416	exon12	c.C3008A	p.S1003Y	.	.	.
CD163	9332	broad.mit.edu	36	12	7530813	7530813	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203416	exon9	c.C2087T	p.S696L	.	.	.
E2F7	144455	broad.mit.edu	36	12	75974022	75974022	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203394	exon3	c.G113A	p.R38Q	.	.	.
APOBEC1	339	broad.mit.edu	36	12	7696622	7696622	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001644	exon3	c.G121A	p.E41K	.	.	.
GDF3	9573	broad.mit.edu	36	12	7733799	7733799	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020634	exon2	c.A1037G	p.D346G	.	.	.
GDF3	9573	broad.mit.edu	36	12	7739508	7739508	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020634	exon1	c.C84A	p.V28V	.	.	.
CLEC4C	170482	broad.mit.edu	36	12	7774750	7774750	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203503	exon5	c.G314T	p.R105I	.	.	.
MYF6	4618	broad.mit.edu	36	12	79626770	79626770	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002469	exon3	c.C629T	p.S210L	.	.	.
ACSS3	79611	broad.mit.edu	36	12	80171485	80171485	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024560	exon15	c.C1900T	p.R634X	.	.	.
PPFIA2	8499	broad.mit.edu	36	12	80672008	80672008	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003625	exon3	c.A124C	p.R42R	.	.	.
C3AR1	719	broad.mit.edu	36	12	8103214	8103214	+	Missense_Mutation	SNP	C	T	T	rs56297048	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004054	exon2	c.G835A	p.E279K	.	.	.
SLC6A15	55117	broad.mit.edu	36	12	83801923	83801923	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018057	exon5	c.C602A	p.S201Y	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	83974883	83974883	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032165	exon8	c.C2181T	p.C727C	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	83983228	83983228	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032165	exon9	c.T2449C	p.C817R	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	84055831	84055831	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079910	exon19	c.G4282A	p.D1428N	.	.	.
MGAT4C	25834	broad.mit.edu	36	12	84897953	84897953	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013244	exon7	c.C682T	p.R228X	.	.	.
MGAT4C	25834	broad.mit.edu	36	12	84898307	84898307	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013244	exon7	c.C328T	p.R110X	.	.	.
C12orf50	160419	broad.mit.edu	36	12	86907205	86907205	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152589	exon8	c.G667T	p.E223X	.	.	.
CEP290	80184	broad.mit.edu	36	12	87003990	87003990	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025114	exon34	c.G4394A	p.R1465Q	.	.	.
KITLG	4254	broad.mit.edu	36	12	87434293	87434293	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003994	exon5	c.G469A	p.A157T	.	.	.
WNK1	65125	broad.mit.edu	36	12	880077	880077	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184985	exon26	c.G7403A	p.S2468N	.	.	.
POC1B	282809	broad.mit.edu	36	12	88384823	88384823	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172240	exon9	c.T887C	p.L296S	.	.	.
ATP2B1	490	broad.mit.edu	36	12	88509136	88509136	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001682	exon20	c.C3419T	p.S1140L	.	.	.
ATP2B1	490	broad.mit.edu	36	12	88519272	88519272	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001323	exon18	c.T3130C	p.S1044P	.	.	.
ATP2B1	490	broad.mit.edu	36	12	88529117	88529117	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001323	exon12	c.G2231A	p.R744Q	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8901040	8901040	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144670	exon24	c.C2862A	p.G954G	.	.	.
A2M	2	broad.mit.edu	36	12	9137373	9137373	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000014	exon18	c.G2195A	p.R732Q	.	.	.
A2M	2	broad.mit.edu	36	12	9151426	9151426	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000014	exon8	c.T840C	p.G280G	.	.	.
A2M	2	broad.mit.edu	36	12	9153831	9153831	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000014	exon6	c.C572A	p.S191Y	.	.	.
PLEKHG7	440107	broad.mit.edu	36	12	91682027	91682027	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004330	exon10	c.C860T	p.S287L	.	.	.
SOCS2	8835	broad.mit.edu	36	12	92492776	92492776	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003877	exon3	c.G287A	p.R96Q	.	.	.
SOCS2	8835	broad.mit.edu	36	12	92492868	92492868	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003877	exon3	c.G379A	p.D127N	.	.	.
PLXNC1	10154	broad.mit.edu	36	12	93145077	93145077	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005761	exon9	c.G1915A	p.E639K	.	.	.
TMCC3	57458	broad.mit.edu	36	12	93499967	93499967	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020698	exon2	c.C557T	p.S186L	.	.	.
FGD6	55785	broad.mit.edu	36	12	94025484	94025484	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018351	exon12	c.C3319T	p.R1107X	.	.	.
FGD6	55785	broad.mit.edu	36	12	94055509	94055509	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018351	exon7	c.G2914T	p.E972X	.	.	.
USP44	84101	broad.mit.edu	36	12	94451676	94451676	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042403	exon2	c.G488A	p.R163Q	.	.	.
AMDHD1	144193	broad.mit.edu	36	12	94878335	94878335	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152435	exon5	c.G616T	p.D206Y	.	.	.
CDK17	5128	broad.mit.edu	36	12	95198741	95198741	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002595	exon16	c.C1510T	p.R504X	.	.	.
NEDD1	121441	broad.mit.edu	36	12	95858327	95858327	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152905	exon10	c.G1127A	p.R376Q	.	.	.
SLC25A3	5250	broad.mit.edu	36	12	97517924	97517924	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002635	exon6	c.C702T	p.F234F	.	.	.
APAF1	317	broad.mit.edu	36	12	97588926	97588926	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013229	exon11	c.A1506C	p.K502N	.	.	.
CLECL1	160365	broad.mit.edu	36	12	9766610	9766610	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172004	exon2	c.A383C	p.K128T	.	.	.
CLECL1	160365	broad.mit.edu	36	12	9776964	9776964	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172004	exon1	c.C164A	p.S55Y	.	.	.
ANKS1B	56899	broad.mit.edu	36	12	97971109	97971109	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181670	exon3	c.C413T	p.S138L	.	.	.
CD69	969	broad.mit.edu	36	12	9799090	9799090	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001781	exon3	c.C222T	p.F74F	.	.	.
UHRF1BP1L	23074	broad.mit.edu	36	12	98976136	98976136	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015054	exon14	c.C3050T	p.S1017L	.	.	.
OR4N4	283694	broad.mit.edu	36	15	19884620	19884620	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005241	exon1	c.T784G	p.F262V	.	.	.
NIPA1	123606	broad.mit.edu	36	15	20600359	20600359	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142275	exon5	c.G676A	p.V226I	.	.	.
MAGEL2	54551	broad.mit.edu	36	15	21440995	21440995	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019066	exon1	c.C2988T	p.V996V	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22472712	22472712	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018958	exon1	c.G605T	p.R202I	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22473476	22473476	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018958	exon1	c.A1369C	p.T457P	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22474120	22474120	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018958	exon1	c.C2013T	p.P671P	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23498337	23498337	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024490	exon13	c.C2579T	p.A860V	.	.	.
GABRA5	2558	broad.mit.edu	36	15	24679438	24679438	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165037	exon5	c.G241A	p.V81I	.	.	.
HERC2	8924	broad.mit.edu	36	15	26115020	26115020	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004667	exon52	c.T8196C	p.C2732C	.	.	.
TJP1	7082	broad.mit.edu	36	15	27781133	27781133	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175610	exon27	c.C4965T	p.L1655L	.	.	.
TJP1	7082	broad.mit.edu	36	15	27852813	27852813	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175610	exon3	c.C124T	p.R42X	.	.	.
FAN1	22909	broad.mit.edu	36	15	28993433	28993433	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014967	exon5	c.C1658T	p.S553L	.	.	.
FAN1	22909	broad.mit.edu	36	15	29008819	29008819	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014967	exon12	c.C2714T	p.T905M	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29081833	29081833	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002420	exon27	c.T4296C	p.C1432C	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29082295	29082295	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002420	exon27	c.C3834T	p.N1278N	.	.	.
FMN1	342184	broad.mit.edu	36	15	31146187	31146187	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001103184	exon1	c.G1191A	p.S397S	.	.	.
RYR3	6263	broad.mit.edu	36	15	31775847	31775847	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036	exon39	c.G5997A	p.A1999A	.	.	.
RYR3	6263	broad.mit.edu	36	15	31827608	31827608	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036	exon54	c.A7991C	p.E2664A	.	.	.
RYR3	6263	broad.mit.edu	36	15	31827731	31827731	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036	exon54	c.G8114A	p.R2705Q	.	.	.
RYR3	6263	broad.mit.edu	36	15	31917548	31917548	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036	exon89	c.C12075T	p.F4025F	.	.	.
RYR3	6263	broad.mit.edu	36	15	31937396	31937396	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036	exon99	c.G14131A	p.D4711N	.	.	.
PGBD4	161779	broad.mit.edu	36	15	32182628	32182628	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152595	exon1	c.C604T	p.R202W	.	.	.
ZNF770	54989	broad.mit.edu	36	15	33061607	33061607	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014106	exon3	c.T1321C	p.S441P	.	.	.
MEIS2	4212	broad.mit.edu	36	15	34976148	34976148	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170676	exon10	c.C1009T	p.P337S	.	.	.
RASGRP1	10125	broad.mit.edu	36	15	36574031	36574031	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005739	exon16	c.T2103C	p.D701D	.	.	.
C15orf23	90417	broad.mit.edu	36	15	38472976	38472976	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033286	exon9	c.G837A	p.K279K	.	.	.
BAHD1	22893	broad.mit.edu	36	15	38538413	38538413	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014952	exon2	c.G458T	p.R153L	.	.	.
RTF1	23168	broad.mit.edu	36	15	39554177	39554177	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015138	exon9	c.A1271T	p.K424I	.	.	.
MGA	23269	broad.mit.edu	36	15	39828366	39828366	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164273	exon16	c.C5452T	p.R1818X	.	.	.
MAPKBP1	23005	broad.mit.edu	36	15	39897738	39897738	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014994	exon18	c.C2035A	p.L679I	.	.	.
GANC	2595	broad.mit.edu	36	15	40406916	40406916	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198141	exon13	c.C1484T	p.A495V	.	.	.
CAPN3	825	broad.mit.edu	36	15	40490136	40490136	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173089	exon6	c.G248A	p.R83Q	.	.	.
UBR1	197131	broad.mit.edu	36	15	41082118	41082118	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174916	exon32	c.C3586T	p.L1196F	.	.	.
TGM7	116179	broad.mit.edu	36	15	41356442	41356442	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052955	exon12	c.T1883C	p.V628A	.	.	.
ZSCAN29	146050	broad.mit.edu	36	15	41448564	41448564	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152455	exon2	c.G372A	p.P124P	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41495155	41495155	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005657	exon23	c.G5003T	p.R1668I	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41517844	41517844	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005657	exon16	c.G3146A	p.R1049Q	.	.	.
SPG11	80208	broad.mit.edu	36	15	42677816	42677816	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025137	exon23	c.G3940T	p.E1314X	.	.	.
TRIM69	140691	broad.mit.edu	36	15	42846900	42846900	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182985	exon7	c.G1141A	p.E381K	.	.	.
DUOX2	50506	broad.mit.edu	36	15	43187582	43187582	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014080	exon13	c.G1529A	p.R510Q	.	.	.
FBN1	2200	broad.mit.edu	36	15	46504945	46504945	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000138	exon60	c.A7366G	p.N2456D	.	.	.
FBN1	2200	broad.mit.edu	36	15	46547558	46547558	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000138	exon38	c.G4616A	p.R1539Q	.	.	.
FBN1	2200	broad.mit.edu	36	15	46589587	46589587	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000138	exon14	c.C1660A	p.H554N	.	.	.
FBN1	2200	broad.mit.edu	36	15	46593079	46593079	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000138	exon13	c.G1547A	p.R516Q	.	.	.
CEP152	22995	broad.mit.edu	36	15	46835992	46835992	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001194998	exon20	c.A2745C	p.E915D	.	.	.
CEP152	22995	broad.mit.edu	36	15	46868326	46868326	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001194998	exon9	c.G1137T	p.K379N	.	.	.
C15orf33	196951	broad.mit.edu	36	15	47450883	47450883	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152647	exon12	c.G1018A	p.D340N	.	.	.
C15orf33	196951	broad.mit.edu	36	15	47621233	47621233	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152647	exon10	c.G810A	p.S270S	.	.	.
ATP8B4	79895	broad.mit.edu	36	15	47976815	47976815	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024837	exon23	c.T2663G	p.F888C	.	.	.
ATP8B4	79895	broad.mit.edu	36	15	48010726	48010726	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024837	exon16	c.C1524A	p.F508L	.	.	.
HDC	3067	broad.mit.edu	36	15	48332234	48332234	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002112	exon8	c.G817A	p.D273N	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48671700	48671700	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017672	exon26	c.G4024T	p.E1342X	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48728211	48728211	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017672	exon4	c.A286C	p.N96H	.	.	.
SPPL2A	84888	broad.mit.edu	36	15	48819272	48819272	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032802	exon6	c.A630C	p.K210N	.	.	.
AP4E1	23431	broad.mit.edu	36	15	49078746	49078746	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007347	exon19	c.C3090A	p.F1030L	.	.	.
TNFAIP8L3	388121	broad.mit.edu	36	15	49137721	49137721	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207381	exon3	c.C528T	p.I176I	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49553997	49553997	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015263	exon28	c.T7046C	p.V2349A	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49560218	49560218	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015263	exon24	c.G6377A	p.R2126H	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49571094	49571094	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015263	exon20	c.T4926G	p.I1642M	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49571181	49571181	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015263	exon20	c.G4839T	p.L1613L	.	.	.
SCG3	29106	broad.mit.edu	36	15	49780613	49780613	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013243	exon10	c.C1087A	p.H363N	.	.	.
LEO1	123169	broad.mit.edu	36	15	50045578	50045578	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138792	exon2	c.G474T	p.K158N	.	.	.
MYO5C	55930	broad.mit.edu	36	15	50323981	50323981	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018728	exon19	c.C2254T	p.R752X	.	.	.
MYO5A	4644	broad.mit.edu	36	15	50468786	50468786	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000259	exon13	c.C1609A	p.L537I	.	.	.
MYO5A	4644	broad.mit.edu	36	15	50489881	50489881	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000259	exon6	c.C697T	p.R233X	.	.	.
WDR72	256764	broad.mit.edu	36	15	51695586	51695586	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182758	exon15	c.T2109G	p.S703S	.	.	.
WDR72	256764	broad.mit.edu	36	15	51779390	51779390	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182758	exon13	c.C1614T	p.S538S	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52094177	52094177	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080534	exon1	c.G1785A	p.A595A	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52094893	52094893	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080534	exon1	c.G2501A	p.R834Q	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52095237	52095237	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080534	exon1	c.G2845T	p.E949X	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52095345	52095345	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080534	exon1	c.G2953C	p.A985P	.	.	.
PIGB	9488	broad.mit.edu	36	15	53420186	53420186	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004855	exon8	c.T931C	p.Y311H	.	.	.
CCPG1	9236	broad.mit.edu	36	15	53457834	53457834	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004748	exon4	c.G208T	p.E70X	.	.	.
PYGO1	26108	broad.mit.edu	36	15	53625577	53625577	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015617	exon3	c.A1196C	p.K399T	.	.	.
PRTG	283659	broad.mit.edu	36	15	53752868	53752868	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173814	exon10	c.C1845T	p.S615S	.	.	.
PRTG	283659	broad.mit.edu	36	15	53753130	53753130	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173814	exon10	c.G1583A	p.R528Q	.	.	.
NEDD4	4734	broad.mit.edu	36	15	53942546	53942546	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006154	exon9	c.A531G	p.Q177Q	.	.	.
NEDD4	4734	broad.mit.edu	36	15	53995673	53995673	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198400	exon1	c.C649T	p.P217S	.	.	.
GCOM1	145781	broad.mit.edu	36	15	55719030	55719030	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152451	exon10	c.G1114A	p.E372K	.	.	.
LIPC	3990	broad.mit.edu	36	15	56617867	56617867	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000236	exon2	c.G132A	p.T44T	.	.	.
CCNB2	9133	broad.mit.edu	36	15	57204336	57204336	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004701	exon9	c.G1165A	p.D389N	.	.	.
ANXA2	302	broad.mit.edu	36	15	58465551	58465551	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002858	exon2	c.G70A	p.E24K	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60038189	60038189	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017684	exon35	c.G3946T	p.D1316Y	.	.	.
RPS27L	51065	broad.mit.edu	36	15	61234936	61234936	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015920	exon3	c.C163A	p.L55I	.	.	.
USP3	9960	broad.mit.edu	36	15	61667630	61667630	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006537	exon12	c.G1170T	p.K390N	.	.	.
HERC1	8925	broad.mit.edu	36	15	61691506	61691506	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003922	exon77	c.T14397C	p.D4799D	.	.	.
HERC1	8925	broad.mit.edu	36	15	61771792	61771792	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003922	exon31	c.G5701A	p.E1901K	HERC1,lung,NS,Substitution - Nonsense,0	.	.
HERC1	8925	broad.mit.edu	36	15	61832337	61832337	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003922	exon8	c.G1775A	p.G592D	.	.	.
DAPK2	23604	broad.mit.edu	36	15	62018497	62018497	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014326	exon5	c.G570A	p.T190T	.	.	.
TRIP4	9325	broad.mit.edu	36	15	62473291	62473291	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016213	exon2	c.A195C	p.E65D	.	.	.
PLEKHO2	80301	broad.mit.edu	36	15	62944414	62944414	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195059	exon5	c.G597T	p.E199D	.	.	.
MTFMT	123263	broad.mit.edu	36	15	63082629	63082629	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139242	exon9	c.C994T	p.R332X	.	.	.
CILP	8483	broad.mit.edu	36	15	63284715	63284715	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003613	exon5	c.C567T	p.S189S	.	.	.
IGDCC3	9543	broad.mit.edu	36	15	63414769	63414769	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004884	exon4	c.C598T	p.R200X	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63770365	63770365	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144823	exon23	c.C3618T	p.V1206V	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63770655	63770655	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144823	exon23	c.C3328A	p.L1110I	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63781222	63781222	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144823	exon18	c.C2491T	p.R831X	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63794943	63794943	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144823	exon14	c.G1880A	p.R627H	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63835716	63835716	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144823	exon3	c.G127T	p.E43X	.	.	.
ZWILCH	55055	broad.mit.edu	36	15	64594936	64594936	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017975	exon4	c.A220G	p.T74A	.	.	.
CORO2B	10391	broad.mit.edu	36	15	66793975	66793975	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006091	exon7	c.C789T	p.I263I	.	.	.
UACA	55075	broad.mit.edu	36	15	68746152	68746152	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018003	exon16	c.G3925T	p.E1309X	.	.	.
UACA	55075	broad.mit.edu	36	15	68762183	68762183	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018003	exon9	c.G790T	p.E264X	.	.	.
UACA	55075	broad.mit.edu	36	15	68763817	68763817	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018003	exon8	c.G625A	p.E209K	.	.	.
NR2E3	10002	broad.mit.edu	36	15	69897005	69897005	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014249	exon8	c.G1160A	p.R387Q	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69978022	69978022	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006901	exon25	c.T3876C	p.V1292V	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69978248	69978248	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006901	exon25	c.G3650A	p.R1217Q	.	.	.
MYO9A	4649	broad.mit.edu	36	15	70107175	70107175	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006901	exon4	c.A949C	p.K317Q	.	.	.
CELF6	60677	broad.mit.edu	36	15	70367841	70367841	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172684	exon10	c.G1099A	p.E367K	.	.	.
TMEM202	338949	broad.mit.edu	36	15	70487092	70487092	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080462	exon5	c.T626A	p.I209N	.	.	.
NEO1	4756	broad.mit.edu	36	15	71205923	71205923	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172623	exon4	c.C837A	p.T279T	.	.	.
NEO1	4756	broad.mit.edu	36	15	71315823	71315823	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172623	exon8	c.G1374A	p.T458T	.	.	.
NEO1	4756	broad.mit.edu	36	15	71377750	71377750	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172623	exon26	c.C3751T	p.R1251X	.	.	.
HCN4	10021	broad.mit.edu	36	15	71408983	71408983	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005477	exon4	c.G1574A	p.R525H	.	.	.
TBC1D21	161514	broad.mit.edu	36	15	71960823	71960823	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153356	exon2	c.G91T	p.E31X	.	.	.
ISLR2	57611	broad.mit.edu	36	15	72212572	72212572	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020851	exon3	c.G424A	p.A142T	.	.	.
ARID3B	10620	broad.mit.edu	36	15	72623410	72623410	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006465	exon2	c.C80T	p.A27V	.	.	.
NEIL1	79661	broad.mit.edu	36	15	73434198	73434198	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024608	exon9	c.G1088A	p.R363Q	.	.	.
MAN2C1	4123	broad.mit.edu	36	15	73437698	73437698	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006715	exon21	c.T2444C	p.F815S	.	.	.
SIN3A	25942	broad.mit.edu	36	15	73475669	73475669	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145358	exon13	c.T2076C	p.V692V	.	.	.
SNUPN	10073	broad.mit.edu	36	15	73689036	73689036	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042581	exon5	c.T420C	p.S140S	.	.	.
SCAPER	49855	broad.mit.edu	36	15	74455600	74455600	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145923	exon29	c.C3075T	p.I1025I	.	.	.
SCAPER	49855	broad.mit.edu	36	15	74550729	74550729	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145923	exon25	c.C2219A	p.S740Y	.	.	.
TBC1D2B	23102	broad.mit.edu	36	15	76133470	76133470	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144572	exon2	c.G475A	p.G159R	.	.	.
ACSBG1	23205	broad.mit.edu	36	15	76313784	76313784	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199377	exon1	c.G115T	p.E39X	.	.	.
WDR61	80349	broad.mit.edu	36	15	76364734	76364734	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025234	exon10	c.C752T	p.S251L	.	.	.
CTSH	1512	broad.mit.edu	36	15	77002432	77002432	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004390	exon11	c.G890A	p.W297X	.	.	.
RASGRF1	5923	broad.mit.edu	36	15	77071141	77071141	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002891	exon22	c.C3126T	p.I1042I	.	.	.
KIAA1024	23251	broad.mit.edu	36	15	77536529	77536529	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015206	exon2	c.G985A	p.E329K	.	.	.
KIAA1024	23251	broad.mit.edu	36	15	77537212	77537213	+	Missense_Mutation	DNP	CG	TA	TA	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015206	exon2	c.1668_1669TA	.	.	.	.
FAM108C1	58489	broad.mit.edu	36	15	78833749	78833749	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021214	exon3	c.G973A	p.E325K	.	.	.
KIAA1199	57214	broad.mit.edu	36	15	79008312	79008312	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018689	exon19	c.G2435A	p.G812D	.	.	.
IL16	3603	broad.mit.edu	36	15	79359159	79359159	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172128	exon8	c.C1070A	p.S357Y	.	.	.
IL16	3603	broad.mit.edu	36	15	79365185	79365185	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172128	exon10	c.G1291A	p.G431S	.	.	.
FAM154B	283726	broad.mit.edu	36	15	80351001	80351001	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008226	exon2	c.C56T	p.S19L	.	.	.
FSD2	123722	broad.mit.edu	36	15	81253092	81253092	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007122	exon2	c.C105A	p.L35L	.	.	.
BTBD1	53339	broad.mit.edu	36	15	81489898	81489898	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025238	exon5	c.G1049A	p.R350Q	.	.	.
BNC1	646	broad.mit.edu	36	15	81722929	81722929	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001717	exon4	c.C2078T	p.A693V	.	.	.
ZNF592	9640	broad.mit.edu	36	15	83128066	83128066	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014630	exon4	c.G1156A	p.E386K	.	.	.
SLC28A1	9154	broad.mit.edu	36	15	83279331	83279331	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004213	exon14	c.G1285A	p.A429T	.	.	.
ACAN	176	broad.mit.edu	36	15	87202137	87202137	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135	exon12	c.C5317A	p.L1773I	.	.	.
ABHD2	11057	broad.mit.edu	36	15	87532526	87532526	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152924	exon8	c.A914G	p.D305G	.	.	.
RHCG	51458	broad.mit.edu	36	15	87821353	87821353	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016321	exon8	c.A1201G	p.T401A	.	.	.
WDR93	56964	broad.mit.edu	36	15	88046136	88046136	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020212	exon2	c.C155A	p.S52Y	.	.	.
ZNF774	342132	broad.mit.edu	36	15	88704829	88704829	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004309	exon4	c.A762G	p.Q254Q	.	.	.
IQGAP1	8826	broad.mit.edu	36	15	88839061	88839061	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003870	exon36	c.C4741A	p.Q1581K	.	.	.
BLM	641	broad.mit.edu	36	15	89147827	89147827	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000057	exon18	c.G3431T	p.R1144I	.	.	.
MAN2A2	4122	broad.mit.edu	36	15	89251655	89251655	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006122	exon7	c.C1122A	p.R374R	.	.	.
PRC1	9055	broad.mit.edu	36	15	89318425	89318425	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003981	exon11	c.G1406A	p.R469Q	.	.	.
PRC1	9055	broad.mit.edu	36	15	89328977	89328977	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003981	exon2	c.C94T	p.P32S	.	.	.
VPS33B	26276	broad.mit.edu	36	15	89344791	89344791	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018668	exon20	c.T1514C	p.V505A	.	.	.
SV2B	9899	broad.mit.edu	36	15	89604631	89604631	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014848	exon7	c.G996T	p.E332D	.	.	.
SLCO3A1	28232	broad.mit.edu	36	15	90464828	90464828	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013272	exon5	c.T1139G	p.F380C	.	.	.
ST8SIA2	8128	broad.mit.edu	36	15	90782827	90782827	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006011	exon4	c.C531T	p.A177A	.	.	.
MCTP2	55784	broad.mit.edu	36	15	92642635	92642635	+	Missense_Mutation	SNP	G	A	A	rs61735139	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159643	exon1	c.G137A	p.R46H	.	.	.
MCTP2	55784	broad.mit.edu	36	15	92683599	92683599	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159643	exon4	c.G714A	p.L238L	.	.	.
MCTP2	55784	broad.mit.edu	36	15	92714356	92714356	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159643	exon11	c.G1525A	p.G509S	.	.	.
MCTP2	55784	broad.mit.edu	36	15	92814642	92814642	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159643	exon18	c.T2272G	p.F758V	.	.	.
FAM169B	283777	broad.mit.edu	36	15	96841462	96841462	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182562	exon4	c.G74T	p.R25I	.	.	.
MEF2A	4205	broad.mit.edu	36	15	98003346	98003346	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005587	exon4	c.C112T	p.L38F	.	.	.
MEF2A	4205	broad.mit.edu	36	15	98029164	98029164	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171894	exon6	c.T372G	p.F124L	.	.	.
CHSY1	22856	broad.mit.edu	36	15	99535635	99535635	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014918	exon3	c.C1890T	p.C630C	.	.	.
ZNF518B	85460	broad.mit.edu	36	4	10056424	10056424	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053042	exon3	c.G627A	p.T209T	.	.	.
RG9MTD2	93587	broad.mit.edu	36	4	100698300	100698300	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134665	exon3	c.C277T	p.R93X	.	.	.
MTTP	4547	broad.mit.edu	36	4	100747048	100747048	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000253	exon12	c.C1465A	p.L489I	.	.	.
CLNK	116449	broad.mit.edu	36	4	10176777	10176777	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052964	exon6	c.G246A	p.S82S	.	.	.
MANBA	4126	broad.mit.edu	36	4	103772350	103772350	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005908	exon17	c.G2552A	p.R851Q	.	.	.
CENPE	1062	broad.mit.edu	36	4	104249468	104249468	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001813	exon48	c.C7952A	p.S2651Y	.	.	.
TACR3	6870	broad.mit.edu	36	4	104859815	104859815	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001059	exon1	c.A467C	p.N156T	.	.	.
GSTCD	79807	broad.mit.edu	36	4	106975173	106975173	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024751	exon9	c.A1376G	p.N459S	.	.	.
SGMS2	166929	broad.mit.edu	36	4	109049253	109049253	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136257	exon5	c.G811A	p.E271K	.	.	.
OSTC	58505	broad.mit.edu	36	4	109791271	109791271	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021227	exon1	c.T11C	p.L4S	.	.	.
COL25A1	84570	broad.mit.edu	36	4	109989367	109989367	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198721	exon26	c.G1431A	p.E477E	.	.	.
SEC24B	10427	broad.mit.edu	36	4	110647020	110647020	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006323	exon7	c.A1576C	p.N526H	.	.	.
ANK2	287	broad.mit.edu	36	4	114498368	114498368	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001148	exon38	c.C9145T	p.R3049W	.	.	.
ANK2	287	broad.mit.edu	36	4	114501450	114501450	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020977	exon38	c.G4449A	p.R1483R	.	.	.
ANK2	287	broad.mit.edu	36	4	114504009	114504009	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020977	exon39	c.C4568A	p.S1523Y	.	.	.
TRAM1L1	133022	broad.mit.edu	36	4	118224900	118224900	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152402	exon1	c.G1098T	p.E366D	.	.	.
SEC24D	9871	broad.mit.edu	36	4	119893304	119893304	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014822	exon12	c.C1609A	p.H537N	.	.	.
SEC24D	9871	broad.mit.edu	36	4	119898383	119898383	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014822	exon11	c.G1362T	p.K454N	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120171006	120171006	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133477	exon4	c.C1628T	p.S543L	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120171642	120171642	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133477	exon4	c.C2264T	p.T755I	.	.	.
USP53	54532	broad.mit.edu	36	4	120412097	120412097	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019050	exon15	c.A1634C	p.K545T	.	.	.
PRDM5	11107	broad.mit.edu	36	4	121938904	121938904	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018699	exon10	c.G1156A	p.A386T	.	.	.
PRDM5	11107	broad.mit.edu	36	4	121959016	121959016	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018699	exon5	c.G592T	p.E198X	.	.	.
TNIP3	79931	broad.mit.edu	36	4	122295204	122295204	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128843	exon7	c.G444A	p.A148A	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123387841	123387841	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015312	exon33	c.G5391T	p.K1797N	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123490126	123490126	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015312	exon77	c.C13510T	p.R4504C	.	.	.
ADAD1	132612	broad.mit.edu	36	4	123520760	123520760	+	Missense_Mutation	SNP	C	T	T	rs13106730	by-hapmap	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139243	exon3	c.C86T	p.A29V	.	.	.
SPATA5	166378	broad.mit.edu	36	4	124074059	124074059	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145207	exon4	c.A462C	p.E154D	.	.	.
ANKRD50	57182	broad.mit.edu	36	4	125810314	125810314	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167882	exon3	c.T3031G	p.S1011A	.	.	.
FAT4	79633	broad.mit.edu	36	4	126462027	126462027	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024582	exon1	c.C5011T	p.R1671C	.	.	.
FAT4	79633	broad.mit.edu	36	4	126556207	126556207	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024582	exon5	c.C6639T	p.V2213V	.	.	.
FAT4	79633	broad.mit.edu	36	4	126589791	126589791	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024582	exon9	c.G8170T	p.E2724X	.	.	.
FAT4	79633	broad.mit.edu	36	4	126590888	126590888	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024582	exon9	c.C9267T	p.F3089F	.	.	.
INTU	27152	broad.mit.edu	36	4	128784435	128784435	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015693	exon2	c.C456A	p.V152V	.	.	.
INTU	27152	broad.mit.edu	36	4	128851675	128851675	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015693	exon14	c.C2527T	p.R843C	.	.	.
SLC25A31	83447	broad.mit.edu	36	4	128907791	128907791	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031291	exon4	c.G599A	p.R200Q	.	.	.
PLK4	10733	broad.mit.edu	36	4	129022440	129022440	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190799	exon2	c.T35G	p.F12C	.	.	.
PHF17	79960	broad.mit.edu	36	4	130012795	130012795	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199320	exon11	c.G2457T	p.K819N	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138661855	138661855	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019035	exon4	c.T3186C	p.F1062F	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138671273	138671273	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019035	exon1	c.A1420T	p.I474F	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138672141	138672141	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019035	exon1	c.C552T	p.I184I	.	.	.
NAA15	80155	broad.mit.edu	36	4	140519363	140519363	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_057175	exon17	c.A2060C	p.K687T	.	.	.
RNF150	57484	broad.mit.edu	36	4	142089948	142089948	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020724	exon3	c.C764T	p.A255V	.	.	.
INPP4B	8821	broad.mit.edu	36	4	143169471	143169471	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003866	exon27	c.A2689C	p.K897Q	.	.	.
USP38	84640	broad.mit.edu	36	4	144354750	144354750	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032557	exon9	c.A2171G	p.Y724C	.	.	.
GAB1	2549	broad.mit.edu	36	4	144609713	144609713	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207123	exon11	c.C2096A	p.A699D	.	.	.
SMARCA5	8467	broad.mit.edu	36	4	144662156	144662156	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003601	exon3	c.G377A	p.R126Q	.	.	.
GYPA	2993	broad.mit.edu	36	4	145259327	145259327	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002099	exon4	c.C261A	p.F87L	.	.	.
ZNF718	255403	broad.mit.edu	36	4	145383	145383	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039127	exon4	c.G908T	p.R303I	.	.	.
ZNF718	255403	broad.mit.edu	36	4	145819	145819	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039127	exon4	c.T1344C	p.D448D	.	.	.
OTUD4	54726	broad.mit.edu	36	4	146284924	146284924	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102653	exon15	c.G1340A	p.R447Q	.	.	.
MMAA	166785	broad.mit.edu	36	4	146794674	146794674	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172250	exon6	c.C898T	p.R300X	.	.	.
ZNF827	152485	broad.mit.edu	36	4	146915160	146915160	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178835	exon11	c.C2808T	p.F936F	.	.	.
POU4F2	5458	broad.mit.edu	36	4	147781090	147781090	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004575	exon2	c.T910C	p.S304P	.	.	.
NR3C2	4306	broad.mit.edu	36	4	149221992	149221992	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166104	exon8	c.A2557C	p.K853Q	.	.	.
NR3C2	4306	broad.mit.edu	36	4	149293127	149293127	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166104	exon5	c.C2102T	p.S701L	.	.	.
C1QTNF7	114905	broad.mit.edu	36	4	15053314	15053314	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031911	exon3	c.C663T	p.F221F	.	.	.
MAB21L2	10586	broad.mit.edu	36	4	151723987	151723987	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006439	exon1	c.C356T	p.A119V	.	.	.
LRBA	987	broad.mit.edu	36	4	151739680	151739680	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006726	exon38	c.G5975A	p.R1992Q	.	.	.
CC2D2A	57545	broad.mit.edu	36	4	15190767	15190767	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080522	exon31	c.C3850T	p.R1284C	.	.	.
LRBA	987	broad.mit.edu	36	4	151993036	151993036	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006726	exon23	c.G3276A	p.E1092E	.	.	.
FBXL5	26234	broad.mit.edu	36	4	15247252	15247252	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012161	exon5	c.G729A	p.S243S	.	.	.
PET112L	5188	broad.mit.edu	36	4	152845815	152845815	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004564	exon7	c.G934A	p.E312K	.	.	.
TIGD4	201798	broad.mit.edu	36	4	153910560	153910560	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145720	exon2	c.A1047G	p.T349T	.	.	.
TIGD4	201798	broad.mit.edu	36	4	153910799	153910799	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145720	exon2	c.C808T	p.R270X	.	.	.
ARFIP1	27236	broad.mit.edu	36	4	154028754	154028754	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025593	exon7	c.C715T	p.R239C	.	.	.
FHDC1	85462	broad.mit.edu	36	4	154101356	154101356	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033393	exon5	c.C760T	p.R254W	.	.	.
FHDC1	85462	broad.mit.edu	36	4	154116431	154116431	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033393	exon11	c.C2538T	p.G846G	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155376855	155376855	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017639	exon25	c.C7034T	p.P2345L	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155410523	155410523	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017639	exon19	c.C5191A	p.L1731I	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155475602	155475602	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142552	exon4	c.G2581A	p.D861N	.	.	.
FGA	2243	broad.mit.edu	36	4	155725129	155725129	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000508	exon6	c.G2198A	p.G733E	.	.	.
FGA	2243	broad.mit.edu	36	4	155726470	155726470	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021871	exon5	c.G1561A	p.D521N	.	.	.
NPY2R	4887	broad.mit.edu	36	4	156355374	156355374	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000910	exon2	c.C833T	p.A278V	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156851607	156851607	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130682	exon6	c.G840A	p.S280S	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156853787	156853787	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130682	exon7	c.G1174T	p.D392Y	.	.	.
GUCY1B3	2983	broad.mit.edu	36	4	156935988	156935988	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000857	exon7	c.C772T	p.R258C	.	.	.
GUCY1B3	2983	broad.mit.edu	36	4	156940495	156940495	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000857	exon9	c.G994A	p.D332N	.	.	.
ACCN5	51802	broad.mit.edu	36	4	156972449	156972449	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017419	exon9	c.C1304T	p.A435V	.	.	.
GRIA2	2891	broad.mit.edu	36	4	158503528	158503528	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001083620	exon15	c.G2393A	p.R798Q	.	.	.
FAM198B	51313	broad.mit.edu	36	4	159311226	159311226	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128424	exon2	c.G752A	p.G251E	.	.	.
FNIP2	57600	broad.mit.edu	36	4	160002308	160002308	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020840	exon12	c.G1395T	p.E465D	.	.	.
NPY5R	4889	broad.mit.edu	36	4	164492201	164492201	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006174	exon4	c.T1326C	p.C442C	.	.	.
TRIM60	166655	broad.mit.edu	36	4	166181991	166181991	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152620	exon3	c.T1317G	p.T439T	.	.	.
CPE	1363	broad.mit.edu	36	4	166605133	166605133	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001873	exon2	c.G449A	p.R150H	.	.	.
CPE	1363	broad.mit.edu	36	4	166608395	166608395	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001873	exon3	c.G610A	p.E204K	.	.	.
TLL1	7092	broad.mit.edu	36	4	167148602	167148602	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012464	exon7	c.G869T	p.R290I	.	.	.
TLL1	7092	broad.mit.edu	36	4	167206353	167206353	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012464	exon16	c.C2076T	p.F692F	.	.	.
TLL1	7092	broad.mit.edu	36	4	167239921	167239921	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012464	exon20	c.T2699G	p.L900R	.	.	.
TLL1	7092	broad.mit.edu	36	4	167240075	167240075	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012464	exon20	c.C2853A	p.L951L	.	.	.
SPOCK3	50859	broad.mit.edu	36	4	167899733	167899733	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016950	exon10	c.G993T	p.K331N	.	.	.
CBR4	84869	broad.mit.edu	36	4	170148028	170148028	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032783	exon5	c.G562A	p.D188N	.	.	.
CLCN3	1182	broad.mit.edu	36	4	170853369	170853369	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001829	exon8	c.C968A	p.S323Y	.	.	.
MFAP3L	9848	broad.mit.edu	36	4	171149639	171149639	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021647	exon3	c.G695A	p.R232H	.	.	.
CLRN2	645104	broad.mit.edu	36	4	17126124	17126125	+	Missense_Mutation	DNP	TG	AT	AT	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079827	exon1	c.137_138AT	.	.	.	.
NCAPG	64151	broad.mit.edu	36	4	17439101	17439101	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022346	exon12	c.G1756A	p.E586K	.	.	.
GLRA3	8001	broad.mit.edu	36	4	175840579	175840579	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042543	exon6	c.C661T	p.L221L	.	.	.
WDR17	116966	broad.mit.edu	36	4	177330638	177330638	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181265	exon24	c.C3221A	p.P1074H	.	.	.
SPATA4	132851	broad.mit.edu	36	4	177343005	177343005	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144644	exon6	c.G838A	p.E280K	.	.	.
SPATA4	132851	broad.mit.edu	36	4	177346278	177346278	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144644	exon5	c.T791C	p.V264A	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183889266	183889266	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080477	exon15	c.C2947T	p.P983S	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183901520	183901520	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080477	exon18	c.C3583T	p.R1195W	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183912721	183912721	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080477	exon21	c.G4207A	p.E1403K	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183913240	183913240	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080477	exon21	c.C4726T	p.R1576X	.	.	.
C4orf41	60684	broad.mit.edu	36	4	184852772	184852772	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199053	exon23	c.C2530T	p.R844C	.	.	.
ACSL1	2180	broad.mit.edu	36	4	185916016	185916016	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001995	exon19	c.C1835T	p.A612V	.	.	.
ACSL1	2180	broad.mit.edu	36	4	185961629	185961629	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001995	exon2	c.A34G	p.M12V	.	.	.
KIAA1430	57587	broad.mit.edu	36	4	186348659	186348659	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020827	exon2	c.C686T	p.S229L	.	.	.
KIAA1430	57587	broad.mit.edu	36	4	186349187	186349187	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020827	exon2	c.C158T	p.S53L	.	.	.
UFSP2	55325	broad.mit.edu	36	4	186573367	186573367	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018359	exon6	c.A620C	p.K207T	.	.	.
FAM149A	25854	broad.mit.edu	36	4	187325345	187325345	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001006655	exon12	c.G1310A	p.R437Q	.	.	.
KLKB1	3818	broad.mit.edu	36	4	187408539	187408539	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000892	exon7	c.C747T	p.I249I	.	.	.
KLKB1	3818	broad.mit.edu	36	4	187415490	187415490	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000892	exon14	c.G1702T	p.E568X	.	.	.
FAT1	2195	broad.mit.edu	36	4	187747147	187747147	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005245	exon27	c.G13360A	p.E4454K	.	.	.
FAT1	2195	broad.mit.edu	36	4	187754914	187754914	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005245	exon25	c.G12774A	p.P4258P	.	.	.
TRIML2	205860	broad.mit.edu	36	4	189249650	189249650	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173553	exon7	c.C1035T	p.F345F	.	.	.
WHSC1	7468	broad.mit.edu	36	4	1922639	1922639	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133331	exon11	c.G1924A	p.E642K	.	.	.
WHSC2	7469	broad.mit.edu	36	4	1963144	1963144	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005663	exon2	c.A340T	p.T114S	.	.	.
HAUS3	79441	broad.mit.edu	36	4	2203553	2203553	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024511	exon5	c.G1711T	p.E571X	.	.	.
GPR125	166647	broad.mit.edu	36	4	22072521	22072521	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145290	exon3	c.G338A	p.R113Q	.	.	.
HAUS3	79441	broad.mit.edu	36	4	2207769	2207769	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024511	exon4	c.T1562G	p.L521R	.	.	.
GBA3	57733	broad.mit.edu	36	4	22358367	22358367	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020973	exon3	c.C637T	p.R213X	.	.	.
CCDC149	91050	broad.mit.edu	36	4	24448979	24448979	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173463	exon6	c.C386T	p.T129M	.	.	.
ANAPC4	29945	broad.mit.edu	36	4	24999456	24999456	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013367	exon6	c.A463C	p.I155L	ANAPC4,large_intestine,colon,Substitution - Missense,0	.	.
SEL1L3	23231	broad.mit.edu	36	4	25369783	25369783	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015187	exon21	c.T2961G	p.F987L	.	.	.
CCKAR	886	broad.mit.edu	36	4	26092597	26092597	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000730	exon5	c.A1048G	p.T350A	.	.	.
TNIP2	79155	broad.mit.edu	36	4	2719223	2719223	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024309	exon2	c.G524A	p.R175Q	.	.	.
NOP14	8602	broad.mit.edu	36	4	2929193	2929193	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003703	exon2	c.G268T	p.E90X	.	.	.
GRK4	2868	broad.mit.edu	36	4	2985298	2985298	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182982	exon8	c.A686G	p.E229G	.	.	.
PCDH7	5099	broad.mit.edu	36	4	30333535	30333535	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032456	exon1	c.G1393A	p.D465N	.	.	.
PCDH7	5099	broad.mit.edu	36	4	30334045	30334045	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032456	exon1	c.A1903G	p.N635D	.	.	.
HTT	3064	broad.mit.edu	36	4	3070833	3070833	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002111	exon3	c.G382A	p.A128T	.	.	.
HTT	3064	broad.mit.edu	36	4	3101846	3101846	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002111	exon14	c.T1884C	p.H628H	.	.	.
HTT	3064	broad.mit.edu	36	4	3152069	3152069	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002111	exon36	c.G4642A	p.D1548N	.	.	.
RGS12	6002	broad.mit.edu	36	4	3400176	3400176	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002926	exon16	c.G3505T	p.E1169X	.	.	.
C4orf19	55286	broad.mit.edu	36	4	37268535	37268535	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001104629	exon4	c.A463G	p.T155A	.	.	.
PGM2	55276	broad.mit.edu	36	4	37522542	37522542	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018290	exon7	c.G882A	p.P294P	.	.	.
FAM114A1	92689	broad.mit.edu	36	4	38593081	38593081	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138389	exon8	c.G937A	p.E313K	.	.	.
TMEM156	80008	broad.mit.edu	36	4	38649105	38649105	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024943	exon6	c.C871T	p.P291S	.	.	.
KLHL5	51088	broad.mit.edu	36	4	38760112	38760112	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015990	exon4	c.C976T	p.R326C	.	.	.
RFC1	5981	broad.mit.edu	36	4	38986904	38986904	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002913	exon13	c.G1632T	p.K544N	.	.	.
KLB	152831	broad.mit.edu	36	4	39112400	39112400	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175737	exon2	c.T1001G	p.I334S	.	.	.
KLB	152831	broad.mit.edu	36	4	39112506	39112506	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175737	exon2	c.C1107A	p.F369L	.	.	.
KLB	152831	broad.mit.edu	36	4	39124867	39124867	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175737	exon4	c.A2126G	p.Y709C	.	.	.
LIAS	11019	broad.mit.edu	36	4	39143101	39143101	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194451	exon5	c.C434A	p.S145Y	.	.	.
DCAF4L1	285429	broad.mit.edu	36	4	41678880	41678880	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029955	exon1	c.G314A	p.R105Q	.	.	.
DCAF4L1	285429	broad.mit.edu	36	4	41679563	41679563	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029955	exon1	c.G997A	p.G333S	.	.	.
SLC30A9	10463	broad.mit.edu	36	4	41782874	41782874	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006345	exon18	c.C1681T	p.R561X	.	.	.
ATP8A1	10396	broad.mit.edu	36	4	42109714	42109714	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006095	exon37	c.G3471A	p.T1157T	.	.	.
ATP8A1	10396	broad.mit.edu	36	4	42312848	42312848	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006095	exon5	c.G368A	p.R123Q	.	.	.
ZNF721	170960	broad.mit.edu	36	4	425668	425668	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133474	exon3	c.A2588C	p.K863T	.	.	.
ZNF721	170960	broad.mit.edu	36	4	425938	425938	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133474	exon3	c.A2318C	p.K773T	.	.	.
GABRA2	2555	broad.mit.edu	36	4	46009470	46009470	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000807	exon5	c.C276A	p.F92L	.	.	.
GABRB1	2560	broad.mit.edu	36	4	46728437	46728437	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000812	exon1	c.A12G	p.V4V	.	.	.
COMMD8	54951	broad.mit.edu	36	4	47157039	47157039	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017845	exon2	c.G101A	p.R34Q	.	.	.
CORIN	10699	broad.mit.edu	36	4	47483516	47483516	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006587	exon3	c.A392G	p.Q131R	.	.	.
NFXL1	152518	broad.mit.edu	36	4	47551865	47551865	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152995	exon20	c.A2389C	p.K797Q	.	.	.
FRYL	285527	broad.mit.edu	36	4	48287603	48287603	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015030	exon17	c.G1337T	p.R446I	.	.	.
FRYL	285527	broad.mit.edu	36	4	48303247	48303247	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015030	exon10	c.G706A	p.V236I	.	.	.
STK32B	55351	broad.mit.edu	36	4	5220945	5220945	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018401	exon3	c.C127T	p.R43X	.	.	.
SGCB	6443	broad.mit.edu	36	4	52589716	52589716	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000232	exon4	c.T558G	p.T186T	.	.	.
USP46	64854	broad.mit.edu	36	4	53187068	53187068	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022832	exon4	c.A435C	p.Q145H	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54824675	54824675	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006206	exon4	c.G452A	p.R151H	.	.	.
KIT	3815	broad.mit.edu	36	4	55270441	55270441	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000222	exon7	c.G1210A	p.A404T	.	.	.
KDR	3791	broad.mit.edu	36	4	55675848	55675848	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002253	exon5	c.A608C	p.K203T	.	.	.
KDR	3791	broad.mit.edu	36	4	55682067	55682067	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002253	exon2	c.G115T	p.D39Y	.	.	.
CLOCK	9575	broad.mit.edu	36	4	56009782	56009782	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004898	exon18	c.C1460T	p.S487F	.	.	.
CLOCK	9575	broad.mit.edu	36	4	56020127	56020127	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004898	exon10	c.G618A	p.E206E	.	.	.
EVC2	132884	broad.mit.edu	36	4	5615557	5615557	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166136	exon22	c.G3606T	p.E1202D	.	.	.
CEP135	9662	broad.mit.edu	36	4	56560491	56560491	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025009	exon17	c.G2203A	p.E735K	.	.	.
EVC2	132884	broad.mit.edu	36	4	5671145	5671145	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166136	exon15	c.C2427T	p.F809F	.	.	.
AASDH	132949	broad.mit.edu	36	4	56914419	56914419	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181806	exon9	c.A1484C	p.E495A	.	.	.
SRP72	6731	broad.mit.edu	36	4	57044108	57044108	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006947	exon9	c.C872T	p.A291V	.	.	.
C4orf14	84273	broad.mit.edu	36	4	57538017	57538017	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032313	exon1	c.C492A	p.F164L	.	.	.
POLR2B	5431	broad.mit.edu	36	4	57576517	57576517	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000938	exon14	c.A1893C	p.Q631H	.	.	.
POLR2B	5431	broad.mit.edu	36	4	57591893	57591893	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000938	exon25	c.G3507A	p.P1169P	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62440999	62440999	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015236	exon7	c.G1307T	p.G436V	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62592800	62592800	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015236	exon22	c.G3548A	p.R1183Q	.	.	.
CENPC1	1060	broad.mit.edu	36	4	68041303	68041303	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001812	exon15	c.C2298T	p.F766F	.	.	.
STAP1	26228	broad.mit.edu	36	4	68123760	68123760	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012108	exon3	c.G255T	p.K85N	.	.	.
UBA6	55236	broad.mit.edu	36	4	68173365	68173365	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018227	exon29	c.G2654A	p.R885H	.	.	.
TMPRSS11B	132724	broad.mit.edu	36	4	68777587	68777587	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182502	exon8	c.G929T	p.G310V	.	.	.
YTHDC1	91746	broad.mit.edu	36	4	68885435	68885435	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031732	exon4	c.A788G	p.D263G	.	.	.
KIAA0232	9778	broad.mit.edu	36	4	6894815	6894815	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014743	exon4	c.C352T	p.R118X	.	.	.
UGT2B10	7365	broad.mit.edu	36	4	69716988	69716988	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001075	exon1	c.T662G	p.F221C	.	.	.
UGT2B11	10720	broad.mit.edu	36	4	70100868	70100868	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001073	exon6	c.C1469A	p.S490Y	.	.	.
UGT2B11	10720	broad.mit.edu	36	4	70114729	70114729	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001073	exon1	c.C301T	p.R101X	.	.	.
TBC1D14	57533	broad.mit.edu	36	4	7057549	7057549	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113361	exon8	c.G1348A	p.E450K	.	.	.
CSN2	1447	broad.mit.edu	36	4	70858052	70858052	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001891	exon5	c.C204T	p.F68F	.	.	.
CCDC96	257236	broad.mit.edu	36	4	7094166	7094166	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153376	exon1	c.C1401T	p.I467I	.	.	.
PROL1	58503	broad.mit.edu	36	4	71310079	71310079	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021225	exon3	c.G445A	p.A149T	.	.	.
IGJ	3512	broad.mit.edu	36	4	71746679	71746679	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144646	exon2	c.G182A	p.R61Q	.	.	.
UTP3	57050	broad.mit.edu	36	4	71773349	71773349	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020368	exon1	c.G91T	p.D31Y	.	.	.
UTP3	57050	broad.mit.edu	36	4	71774621	71774621	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020368	exon1	c.C1363T	p.R455C	.	.	.
MOBKL1A	92597	broad.mit.edu	36	4	72043506	72043506	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173468	exon2	c.T66C	p.G22G	.	.	.
ANKRD17	26057	broad.mit.edu	36	4	74219712	74219712	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198889	exon15	c.G2467T	p.D823Y	.	.	.
ALB	213	broad.mit.edu	36	4	74498038	74498038	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000477	exon8	c.C881T	p.S294L	.	.	.
BTC	685	broad.mit.edu	36	4	75900125	75900125	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001729	exon3	c.C249T	p.R83R	.	.	.
G3BP2	9908	broad.mit.edu	36	4	76789909	76789909	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203504	exon11	c.C1079T	p.P360L	.	.	.
USO1	8615	broad.mit.edu	36	4	76927245	76927245	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003715	exon8	c.C711T	p.F237F	.	.	.
USO1	8615	broad.mit.edu	36	4	76940607	76940607	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003715	exon13	c.C1492T	p.R498X	.	.	.
USO1	8615	broad.mit.edu	36	4	76941370	76941370	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003715	exon15	c.G1828A	p.E610K	.	.	.
PPEF2	5470	broad.mit.edu	36	4	77004670	77004670	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006239	exon16	c.G1955A	p.R652Q	.	.	.
PPEF2	5470	broad.mit.edu	36	4	77007576	77007576	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006239	exon14	c.C1670T	p.S557L	.	.	.
SDAD1	55153	broad.mit.edu	36	4	77096297	77096297	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018115	exon21	c.G1871A	p.R624Q	.	.	.
SHROOM3	57619	broad.mit.edu	36	4	77879995	77879995	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020859	exon5	c.A1645G	p.T549A	.	.	.
AFAP1	60312	broad.mit.edu	36	4	7862344	7862344	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134647	exon9	c.G951A	p.S317S	.	.	.
CXCL13	10563	broad.mit.edu	36	4	78747975	78747975	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006419	exon3	c.C159A	p.I53I	.	.	.
MRPL1	65008	broad.mit.edu	36	4	79023449	79023449	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020236	exon3	c.A173C	p.K58T	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79647612	79647612	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025074	exon62	c.C9330A	p.I3110I	.	.	.
BMP2K	55589	broad.mit.edu	36	4	80051707	80051707	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198892	exon16	c.G2982A	p.G994G	.	.	.
PAQR3	152559	broad.mit.edu	36	4	80060726	80060726	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040202	exon6	c.A927G	p.S309S	.	.	.
GK2	2712	broad.mit.edu	36	4	80547971	80547971	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033214	exon1	c.C408T	p.F136F	.	.	.
ANTXR2	118429	broad.mit.edu	36	4	81195634	81195634	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145794	exon5	c.A390C	p.Q130H	.	.	.
PRKG2	5593	broad.mit.edu	36	4	82229894	82229894	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006259	exon18	c.G2281T	p.D761Y	.	.	.
PRKG2	5593	broad.mit.edu	36	4	82315101	82315101	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006259	exon2	c.T498C	p.N166N	.	.	.
RASGEF1B	153020	broad.mit.edu	36	4	82597798	82597798	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152545	exon3	c.G179T	p.R60I	.	.	.
SH3TC1	54436	broad.mit.edu	36	4	8286003	8286003	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018986	exon14	c.G3145A	p.A1049T	.	.	.
GAK	2580	broad.mit.edu	36	4	834846	834846	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005255	exon26	c.G3535A	p.D1179N	.	.	.
GAK	2580	broad.mit.edu	36	4	835593	835593	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005255	exon25	c.G3453A	p.S1151S	.	.	.
THAP9	79725	broad.mit.edu	36	4	84058383	84058383	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024672	exon5	c.G1994A	p.R665Q	.	.	.
HELQ	113510	broad.mit.edu	36	4	84566209	84566209	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133636	exon14	c.T2737G	p.F913V	.	.	.
HELQ	113510	broad.mit.edu	36	4	84569836	84569836	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133636	exon12	c.C2383A	p.L795I	.	.	.
FAM175A	84142	broad.mit.edu	36	4	84612423	84612423	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139076	exon4	c.G258T	p.K86N	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85819263	85819263	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014991	exon65	c.G9980T	p.G3327V	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85930024	85930024	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014991	exon22	c.G3548A	p.R1183Q	.	.	.
ARHGAP24	83478	broad.mit.edu	36	4	86710772	86710772	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025616	exon2	c.G54T	p.Q18H	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87833824	87833824	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080684	exon6	c.C607T	p.R203X	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87939298	87939298	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080684	exon39	c.A5849G	p.E1950G	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87943942	87943942	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080684	exon40	c.C5989T	p.P1997S	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87948003	87948003	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080684	exon42	c.C6439T	p.R2147X	.	.	.
AFF1	4299	broad.mit.edu	36	4	88271319	88271319	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166693	exon17	c.G3025T	p.G1009X	.	.	.
KLHL8	57563	broad.mit.edu	36	4	88325650	88325650	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020803	exon3	c.G542A	p.R181Q	.	.	.
HSD17B13	345275	broad.mit.edu	36	4	88450436	88450436	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136230	exon5	c.C687A	p.I229I	.	.	.
NUDT9	53343	broad.mit.edu	36	4	88598023	88598023	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198038	exon8	c.G729A	p.E243E	.	.	.
IBSP	3381	broad.mit.edu	36	4	88951649	88951649	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004967	exon7	c.G517A	p.E173K	.	.	.
MEPE	56955	broad.mit.edu	36	4	88986389	88986389	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184697	exon6	c.A1006C	p.N336H	.	.	.
PKD2	5311	broad.mit.edu	36	4	89186984	89186984	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000297	exon6	c.C1486T	p.R496C	.	.	.
HERC6	55008	broad.mit.edu	36	4	89536299	89536299	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017912	exon6	c.C868T	p.R290C	.	.	.
HERC6	55008	broad.mit.edu	36	4	89580091	89580091	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017912	exon21	c.C2597T	p.S866F	.	.	.
FAM13A	10144	broad.mit.edu	36	4	90078316	90078316	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014883	exon5	c.T705C	p.Y235Y	.	.	.
TIGD2	166815	broad.mit.edu	36	4	90254325	90254325	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145715	exon1	c.G1177T	p.E393X	.	.	.
GPRIN3	285513	broad.mit.edu	36	4	90390170	90390170	+	Missense_Mutation	SNP	G	T	T	rs11734353	by-cluster,by-frequency,by-hapmap	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198281	exon2	c.C115A	p.L39I	.	.	.
MMRN1	22915	broad.mit.edu	36	4	91075115	91075115	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007351	exon6	c.G1261A	p.E421K	.	.	.
GRID2	2895	broad.mit.edu	36	4	93444904	93444904	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001510	exon1	c.C74T	p.S25L	.	.	.
ATOH1	474	broad.mit.edu	36	4	94969574	94969574	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005172	exon1	c.G474A	p.K158K	.	.	.
SMARCAD1	56916	broad.mit.edu	36	4	95348596	95348596	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128429	exon2	c.C28T	p.R10C	.	.	.
PDLIM5	10611	broad.mit.edu	36	4	95727237	95727237	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011515	exon9	c.G686A	p.R229H	.	.	.
BMPR1B	658	broad.mit.edu	36	4	96255913	96255913	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001203	exon6	c.G301A	p.E101K	.	.	.
BMPR1B	658	broad.mit.edu	36	4	96288932	96288932	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001203	exon11	c.G1087T	p.E363X	.	.	.
BMPR1B	658	broad.mit.edu	36	4	96289011	96289011	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001203	exon11	c.G1166T	p.R389I	.	.	.
UNC5C	8633	broad.mit.edu	36	4	96343012	96343012	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003728	exon12	c.G2029T	p.A677S	.	.	.
PDHA2	5161	broad.mit.edu	36	4	96981222	96981222	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005390	exon1	c.C898T	p.R300C	.	.	.
PDHA2	5161	broad.mit.edu	36	4	96981351	96981351	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005390	exon1	c.G1027T	p.E343X	.	.	.
WWC3	55841	broad.mit.edu	36	X	10006904	10006904	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015691	exon4	c.C286T	p.R96C	.	.	.
TRMT2B	79979	broad.mit.edu	36	X	100163694	100163694	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167970	exon9	c.T770C	p.V257A	.	.	.
BTK	695	broad.mit.edu	36	X	100500055	100500055	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000061	exon12	c.A1001G	p.Y334C	.	.	.
BTK	695	broad.mit.edu	36	X	100503879	100503879	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000061	exon7	c.A526C	p.K176Q	.	.	.
WWC3	55841	broad.mit.edu	36	X	10050717	10050717	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015691	exon12	c.C1689T	p.S563S	.	.	.
BTK	695	broad.mit.edu	36	X	100516268	100516268	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000061	exon3	c.G152A	p.S51N	.	.	.
GLA	2717	broad.mit.edu	36	X	100540551	100540551	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000169	exon5	c.C679T	p.R227X	.	.	.
TMSB15A	11013	broad.mit.edu	36	X	101656716	101656716	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021992	exon2	c.A32T	p.E11V	.	.	.
ARMCX5	64860	broad.mit.edu	36	X	101744417	101744417	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168485	exon5	c.T692C	p.V231A	.	.	.
GPRASP2	114928	broad.mit.edu	36	X	101858655	101858655	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004051	exon5	c.G2202A	p.T734T	.	.	.
BHLHB9	80823	broad.mit.edu	36	X	101892139	101892139	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142528	exon4	c.C1560T	p.G520G	.	.	.
WBP5	51186	broad.mit.edu	36	X	102499494	102499494	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001006612	exon3	c.G226A	p.E76K	.	.	.
MORF4L2	9643	broad.mit.edu	36	X	102818108	102818108	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142429	exon5	c.G504A	p.S168S	.	.	.
GLRA4	441509	broad.mit.edu	36	X	102865757	102865757	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172285	exon4	c.C399T	p.F133F	.	.	.
ESX1	80712	broad.mit.edu	36	X	103385523	103385523	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153448	exon2	c.C474T	p.F158F	.	.	.
MORC4	79710	broad.mit.edu	36	X	106071442	106071442	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085354	exon17	c.C2699T	p.S900L	.	.	.
MORC4	79710	broad.mit.edu	36	X	106072996	106072996	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085354	exon15	c.C1781T	p.A594V	.	.	.
MID2	11043	broad.mit.edu	36	X	107056736	107056736	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012216	exon10	c.A1985G	p.N662S	.	.	.
COL4A6	1288	broad.mit.edu	36	X	107317856	107317856	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033641	exon22	c.C1645A	p.L549I	.	.	.
IRS4	8471	broad.mit.edu	36	X	107862852	107862852	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003604	exon1	c.A3379C	p.T1127P	.	.	.
GUCY2F	2986	broad.mit.edu	36	X	108538895	108538895	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001522	exon9	c.C1950A	p.L650L	.	.	.
KCNE1L	23630	broad.mit.edu	36	X	108754705	108754705	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012282	exon1	c.G201T	p.M67I	.	.	.
CHRDL1	91851	broad.mit.edu	36	X	109806189	109806189	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143981	exon12	c.C1303T	p.R435C	.	.	.
CAPN6	827	broad.mit.edu	36	X	110393708	110393708	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014289	exon2	c.C113A	p.S38Y	.	.	.
ARHGAP6	395	broad.mit.edu	36	X	11106234	11106234	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013423	exon8	c.T927G	p.P309P	.	.	.
LUZP4	51213	broad.mit.edu	36	X	114442852	114442852	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016383	exon2	c.C131T	p.A44V	.	.	.
AGTR2	186	broad.mit.edu	36	X	115218097	115218097	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000686	exon3	c.T536G	p.F179C	.	.	.
DOCK11	139818	broad.mit.edu	36	X	117670030	117670030	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144658	exon42	c.A4657G	p.I1553V	.	.	.
KIAA1210	57481	broad.mit.edu	36	X	118103462	118103462	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020721	exon12	c.A4760C	p.K1587T	.	.	.
SEPT6	23157	broad.mit.edu	36	X	118681613	118681613	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145799	exon3	c.C201T	p.F67F	.	.	.
FAM70A	55026	broad.mit.edu	36	X	119294829	119294829	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017938	exon8	c.A686G	p.N229S	.	.	.
C1GALT1C1	29071	broad.mit.edu	36	X	119644745	119644745	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152692	exon3	c.C305T	p.S102F	.	.	.
GLUD2	2747	broad.mit.edu	36	X	120009595	120009595	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012084	exon1	c.G376A	p.D126N	.	.	.
THOC2	57187	broad.mit.edu	36	X	122575671	122575671	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081550	exon34	c.A4362C	p.E1454D	.	.	.
THOC2	57187	broad.mit.edu	36	X	122585416	122585416	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081550	exon28	c.A3406C	p.K1136Q	.	.	.
STAG2	10735	broad.mit.edu	36	X	123012702	123012702	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042750	exon12	c.T1068C	p.Y356Y	.	.	.
FRMPD4	9758	broad.mit.edu	36	X	12542886	12542886	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014728	exon4	c.C387T	p.S129S	.	.	.
FRMPD4	9758	broad.mit.edu	36	X	12618320	12618320	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014728	exon8	c.C767T	p.A256V	.	.	.
SMARCA1	6594	broad.mit.edu	36	X	128432892	128432892	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003069	exon20	c.G2535A	p.E845E	.	.	.
TLR8	51311	broad.mit.edu	36	X	12847474	12847474	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138636	exon2	c.C394T	p.L132F	.	.	.
TLR8	51311	broad.mit.edu	36	X	12849716	12849716	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138636	exon2	c.T2636C	p.F879S	.	.	.
XPNPEP2	7512	broad.mit.edu	36	X	128730031	128730031	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003399	exon21	c.C1914T	p.F638F	.	.	.
ELF4	2000	broad.mit.edu	36	X	129042944	129042944	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001421	exon2	c.C42T	p.F14F	.	.	.
ARHGAP36	158763	broad.mit.edu	36	X	130047324	130047324	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144967	exon8	c.G1037A	p.R346H	.	.	.
IGSF1	3547	broad.mit.edu	36	X	130242903	130242903	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170962	exon8	c.T1589C	p.I530T	.	.	.
OR13H1	347468	broad.mit.edu	36	X	130506537	130506537	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004486	exon1	c.A809G	p.D270G	.	.	.
MST4	51765	broad.mit.edu	36	X	131029978	131029978	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042453	exon4	c.T154G	p.L52V	.	.	.
HS6ST2	90161	broad.mit.edu	36	X	131590127	131590127	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077188	exon6	c.G1743A	p.P581P	.	.	.
ATXN3L	92552	broad.mit.edu	36	X	13247022	13247022	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135995	exon1	c.C953T	p.S318L	.	.	.
CT45A5	441521	broad.mit.edu	36	X	134775575	134775575	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172288	exon3	c.G416A	p.R139Q	.	.	.
SAGE1	55511	broad.mit.edu	36	X	134816325	134816325	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018666	exon7	c.C685T	p.R229C	.	.	.
GPR112	139378	broad.mit.edu	36	X	135255738	135255738	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153834	exon6	c.T2207A	p.F736Y	.	.	.
GPR112	139378	broad.mit.edu	36	X	135258720	135258720	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153834	exon6	c.A5189G	p.N1730S	.	.	.
GPR112	139378	broad.mit.edu	36	X	135269146	135269146	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153834	exon11	c.G7010A	p.S2337N	.	.	.
GPR112	139378	broad.mit.edu	36	X	135315610	135315610	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153834	exon23	c.T8748C	p.V2916V	.	.	.
VGLL1	51442	broad.mit.edu	36	X	135460597	135460597	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016267	exon4	c.G639T	p.K213N	.	.	.
TCEANC	170082	broad.mit.edu	36	X	13591089	13591089	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152634	exon4	c.C631A	p.L211I	.	.	.
GPR101	83550	broad.mit.edu	36	X	135940218	135940218	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_054021	exon1	c.G1282A	p.E428K	.	.	.
CSF2RA	1438	broad.mit.edu	36	X	1367431	1367431	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172245	exon5	c.C239T	p.S80L	.	.	.
F9	2158	broad.mit.edu	36	X	138471660	138471660	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000133	exon8	c.C1150T	p.R384X	.	.	.
MCF2	4168	broad.mit.edu	36	X	138536551	138536551	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099855	exon8	c.A649C	p.K217Q	.	.	.
ATP11C	286410	broad.mit.edu	36	X	138692495	138692495	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010986	exon18	c.G1838T	p.R613I	.	.	.
LDOC1	23641	broad.mit.edu	36	X	140098620	140098620	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012317	exon1	c.G253A	p.D85N	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140821926	140821926	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005462	exon4	c.C1070A	p.S357Y	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140822886	140822886	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005462	exon4	c.A2030G	p.Q677R	.	.	.
SLITRK2	84631	broad.mit.edu	36	X	144713042	144713042	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144006	exon3	c.T1407G	p.A469A	.	.	.
GLRA2	2742	broad.mit.edu	36	X	14537206	14537206	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001118885	exon8	c.G888A	p.T296T	.	.	.
AFF2	2334	broad.mit.edu	36	X	147551328	147551328	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002025	exon3	c.A388G	p.T130A	.	.	.
FANCB	2187	broad.mit.edu	36	X	14772572	14772572	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018113	exon9	c.C2139T	p.F713F	.	.	.
AFF2	2334	broad.mit.edu	36	X	147845746	147845746	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002025	exon11	c.C2471T	p.A824V	.	.	.
MAMLD1	10046	broad.mit.edu	36	X	149389330	149389330	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177466	exon2	c.C752A	p.S251Y	.	.	.
MTMR1	8776	broad.mit.edu	36	X	149649734	149649734	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003828	exon7	c.G713T	p.R238I	.	.	.
CD99L2	83692	broad.mit.edu	36	X	149714375	149714375	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_134446	exon4	c.G245A	p.R82Q	.	.	.
PRRG3	79057	broad.mit.edu	36	X	150619151	150619151	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024082	exon3	c.C35T	p.S12L	.	.	.
GABRE	2564	broad.mit.edu	36	X	150874607	150874607	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004961	exon8	c.C1026A	p.F342L	.	.	.
PNMA5	114824	broad.mit.edu	36	X	151910056	151910056	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001103150	exon2	c.T743C	p.F248S	.	.	.
TKTL1	8277	broad.mit.edu	36	X	153204751	153204751	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145933	exon9	c.C1173T	p.D391D	.	.	.
F8	2157	broad.mit.edu	36	X	153785987	153785987	+	Missense_Mutation	SNP	C	A	A	rs28933678	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000132	exon17	c.G5593T	p.D1865Y	.	.	.
F8	2157	broad.mit.edu	36	X	153812819	153812819	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000132	exon14	c.C2440T	p.R814X	.	.	.
F8	2157	broad.mit.edu	36	X	153829181	153829181	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000132	exon13	c.C2099T	p.S700L	.	.	.
MTCP1	4515	broad.mit.edu	36	X	153945448	153945448	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018024	exon2	c.G45T	p.Q15H	.	.	.
P2RY8	286530	broad.mit.edu	36	X	1544669	1544669	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178129	exon2	c.C783T	p.I261I	.	.	.
BMX	660	broad.mit.edu	36	X	15465326	15465326	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203281	exon14	c.C1371A	p.F457L	.	.	.
VAMP7	6845	broad.mit.edu	36	X	154772457	154772457	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005638	exon2	c.A134G	p.Y45C	.	.	.
RBBP7	5931	broad.mit.edu	36	X	16780858	16780858	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198719	exon7	c.G952A	p.E318K	.	.	.
NHS	4810	broad.mit.edu	36	X	17660129	17660129	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136024	exon9	c.G4049A	p.R1350H	.	.	.
BEND2	139105	broad.mit.edu	36	X	18129883	18129883	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153346	exon6	c.T1006G	p.L336V	.	.	.
BEND2	139105	broad.mit.edu	36	X	18131759	18131759	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153346	exon5	c.C690T	p.F230F	.	.	.
PPEF1	5475	broad.mit.edu	36	X	18710417	18710417	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152226	exon11	c.G738A	p.T246T	.	.	.
GPR64	10149	broad.mit.edu	36	X	18996801	18996801	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184837	exon3	c.C73A	p.L25I	.	.	.
SMS	6611	broad.mit.edu	36	X	21905234	21905234	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004595	exon5	c.C464T	p.S155L	.	.	.
PHEX	5251	broad.mit.edu	36	X	21961068	21961068	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000444	exon1	c.C24T	p.S8S	.	.	.
KLHL15	80311	broad.mit.edu	36	X	23916295	23916295	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030624	exon4	c.C1479T	p.F493F	.	.	.
MAGEB10	139422	broad.mit.edu	36	X	27750253	27750253	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182506	exon3	c.C909A	p.F303L	.	.	.
ARSH	347527	broad.mit.edu	36	X	2946657	2946657	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011719	exon5	c.C847T	p.R283C	.	.	.
CXorf21	80231	broad.mit.edu	36	X	30488178	30488178	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025159	exon3	c.G216A	p.E72E	.	.	.
TAB3	257397	broad.mit.edu	36	X	30780826	30780826	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152787	exon7	c.C1700T	p.A567V	.	.	.
DMD	1756	broad.mit.edu	36	X	31607556	31607556	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004021	exon10	c.G349A	p.E117K	.	.	.
DMD	1756	broad.mit.edu	36	X	31857732	31857732	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004011	exon19	c.G2791T	p.E931X	.	.	.
DMD	1756	broad.mit.edu	36	X	32366389	32366389	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004006	exon29	c.A3961C	p.N1321H	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3252450	3252450	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015419	exon5	c.C1276A	p.L426I	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3252528	3252528	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015419	exon5	c.G1198T	p.D400Y	.	.	.
CXorf22	170063	broad.mit.edu	36	X	35884145	35884145	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152632	exon8	c.G1321A	p.E441K	.	.	.
CXorf59	286464	broad.mit.edu	36	X	36013436	36013436	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173695	exon5	c.G501A	p.K167K	.	.	.
SRPX	8406	broad.mit.edu	36	X	37918443	37918443	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006307	exon3	c.G263A	p.R88H	.	.	.
OTC	5009	broad.mit.edu	36	X	38114051	38114051	+	Missense_Mutation	SNP	G	A	A	rs66550391	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000531	exon3	c.G275A	p.R92Q	.	.	.
OTC	5009	broad.mit.edu	36	X	38147901	38147901	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000531	exon6	c.G627A	p.A209A	.	.	.
BCOR	54880	broad.mit.edu	36	X	39817402	39817402	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001123383	exon4	c.T2141G	p.V714G	.	.	.
CXorf38	159013	broad.mit.edu	36	X	40383232	40383232	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144970	exon3	c.C444T	p.F148F	.	.	.
USP9X	8239	broad.mit.edu	36	X	40930726	40930726	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039590	exon24	c.A3571G	p.T1191A	.	.	.
USP9X	8239	broad.mit.edu	36	X	40932235	40932235	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039590	exon25	c.A3731C	p.K1244T	.	.	.
GPR34	2857	broad.mit.edu	36	X	41440081	41440081	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005300	exon3	c.G251A	p.R84H	.	.	.
CASK	8573	broad.mit.edu	36	X	41483621	41483621	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126054	exon5	c.G389A	p.R130H	.	.	.
EFHC2	80258	broad.mit.edu	36	X	43973869	43973869	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025184	exon11	c.A1721C	p.H574P	.	.	.
FUNDC1	139341	broad.mit.edu	36	X	44286210	44286210	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173794	exon2	c.T110G	p.F37C	.	.	.
ZNF674	641339	broad.mit.edu	36	X	46244792	46244792	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190417	exon6	c.A1161C	p.K387N	.	.	.
SLC9A7	84679	broad.mit.edu	36	X	46357697	46357697	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032591	exon16	c.C1897T	p.R633X	.	.	.
NDUFB11	54539	broad.mit.edu	36	X	46886761	46886761	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019056	exon3	c.G391A	p.E131K	.	.	.
CACNA1F	778	broad.mit.edu	36	X	48971717	48971717	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005183	exon7	c.C954T	p.F318F	.	.	.
PPP1R3F	89801	broad.mit.edu	36	X	49029294	49029294	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033215	exon4	c.A1198C	p.S400R	.	.	.
CLCN5	1184	broad.mit.edu	36	X	49721368	49721368	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127899	exon5	c.T258C	p.D86D	.	.	.
CCNB3	85417	broad.mit.edu	36	X	50069799	50069799	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033031	exon5	c.G1890A	p.T630T	.	.	.
SHROOM4	57477	broad.mit.edu	36	X	50367240	50367240	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020717	exon6	c.T3642G	p.D1214E	.	.	.
GSPT2	23708	broad.mit.edu	36	X	51504183	51504183	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018094	exon1	c.G721T	p.E241X	.	.	.
SPANXN5	494197	broad.mit.edu	36	X	52842363	52842363	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009616	exon2	c.G109A	p.E37K	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53627537	53627537	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031407	exon42	c.C5226T	p.I1742I	.	.	.
PHF8	23133	broad.mit.edu	36	X	54028385	54028385	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184898	exon19	c.C2079T	p.S693S	.	.	.
WNK3	65267	broad.mit.edu	36	X	54292180	54292180	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002838	exon17	c.G3326A	p.R1109Q	.	.	.
ITIH5L	347365	broad.mit.edu	36	X	54817282	54817282	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198510	exon6	c.T860C	p.V287A	.	.	.
MAGED2	10916	broad.mit.edu	36	X	54854776	54854776	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201222	exon6	c.G955A	p.E319K	.	.	.
TRO	7216	broad.mit.edu	36	X	54970876	54970876	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016157	exon11	c.C1815A	p.F605L	.	.	.
FOXR2	139628	broad.mit.edu	36	X	55666898	55666898	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198451	exon1	c.T29G	p.F10C	.	.	.
UBQLN2	29978	broad.mit.edu	36	X	56608183	56608183	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013444	exon1	c.G1152A	p.Q384Q	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	5821554	5821554	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020742	exon6	c.G1755A	p.T585T	.	.	.
HEPH	9843	broad.mit.edu	36	X	65325070	65325070	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130860	exon5	c.A779C	p.K260T	.	.	.
EDA2R	60401	broad.mit.edu	36	X	65752510	65752510	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199687	exon2	c.G78A	p.E26E	.	.	.
AWAT2	158835	broad.mit.edu	36	X	69186444	69186444	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002254	exon1	c.T64C	p.S22P	.	.	.
P2RY4	5030	broad.mit.edu	36	X	69395865	69395865	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002565	exon1	c.G335A	p.R112H	.	.	.
KIF4A	24137	broad.mit.edu	36	X	69540606	69540606	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012310	exon24	c.G2787T	p.E929D	.	.	.
GDPD2	54857	broad.mit.edu	36	X	69569632	69569632	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171193	exon15	c.A1354G	p.T452A	.	.	.
DLG3	1741	broad.mit.edu	36	X	69629118	69629118	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021120	exon12	c.C1720T	p.R574X	.	.	.
TEX11	56159	broad.mit.edu	36	X	70009819	70009819	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001003811	exon5	c.A268C	p.N90H	.	.	.
SLC7A3	84889	broad.mit.edu	36	X	70063912	70063912	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032803	exon8	c.T1231C	p.S411P	.	.	.
SLC7A3	84889	broad.mit.edu	36	X	70064447	70064447	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032803	exon6	c.G969T	p.E323D	.	.	.
SLC7A3	84889	broad.mit.edu	36	X	70064522	70064522	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032803	exon6	c.G894A	p.A298A	.	.	.
ZMYM3	9203	broad.mit.edu	36	X	70380543	70380543	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171162	exon21	c.G3257A	p.R1086H	.	.	.
TAF1	6872	broad.mit.edu	36	X	70524881	70524881	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138923	exon16	c.A2494C	p.K832Q	.	.	.
TAF1	6872	broad.mit.edu	36	X	70535191	70535191	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138923	exon24	c.G3662A	p.R1221Q	.	.	.
FLJ44635	392490	broad.mit.edu	36	X	71296637	71296637	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207422	exon2	c.T233C	p.V78A	.	.	.
STS	412	broad.mit.edu	36	X	7181331	7181331	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000351	exon2	c.G106A	p.D36N	.	.	.
KIAA2022	340533	broad.mit.edu	36	X	73877600	73877600	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008537	exon3	c.T3517C	p.S1173P	.	.	.
ABCB7	22	broad.mit.edu	36	X	74207037	74207037	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004299	exon10	c.T1256G	p.F419C	.	.	.
CYSLTR1	10800	broad.mit.edu	36	X	77415012	77415012	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006639	exon3	c.C888A	p.F296L	.	.	.
LPAR4	2846	broad.mit.edu	36	X	77897456	77897456	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005296	exon2	c.G434A	p.R145Q	.	.	.
LPAR4	2846	broad.mit.edu	36	X	77897708	77897708	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005296	exon2	c.G686A	p.R229K	.	.	.
P2RY10	27334	broad.mit.edu	36	X	78103465	78103465	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198333	exon2	c.T792G	p.I264M	.	.	.
TBX22	50945	broad.mit.edu	36	X	79173018	79173018	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001109878	exon9	c.T1315C	p.S439P	.	.	.
HDX	139324	broad.mit.edu	36	X	83611073	83611073	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177479	exon4	c.T314C	p.V105A	.	.	.
POF1B	79983	broad.mit.edu	36	X	84447880	84447880	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024921	exon12	c.G1280A	p.R427H	.	.	.
KLHL4	56062	broad.mit.edu	36	X	86806533	86806533	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_057162	exon10	c.G2039A	p.G680E	.	.	.
FAM9B	171483	broad.mit.edu	36	X	8960419	8960419	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_205849	exon2	c.G112A	p.E38K	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91343048	91343048	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032968	exon3	c.C3052T	p.R1018X	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91760245	91760245	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032968	exon7	c.C3694A	p.H1232N	.	.	.
NAP1L3	4675	broad.mit.edu	36	X	92813938	92813938	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004538	exon1	c.C1022T	p.S341L	.	.	.
NAP1L3	4675	broad.mit.edu	36	X	92814675	92814675	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004538	exon1	c.T285G	p.N95K	.	.	.
RPA4	29935	broad.mit.edu	36	X	96026521	96026521	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013347	exon1	c.G556A	p.E186K	.	.	.
DIAPH2	1730	broad.mit.edu	36	X	96078994	96078994	+	Missense_Mutation	SNP	G	A	A	rs41300144	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006729	exon11	c.G1196A	p.R399Q	.	.	.
TSPAN6	7105	broad.mit.edu	36	X	99777346	99777346	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003270	exon2	c.G141A	p.E47E	.	.	.
MAP4K4	9448	broad.mit.edu	36	2	101849327	101849327	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145687	exon18	c.T1886G	p.I629S	.	.	.
MAP4K4	9448	broad.mit.edu	36	2	101857095	101857095	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145687	exon24	c.C2674T	p.R892C	.	.	.
RRM2	6241	broad.mit.edu	36	2	10186440	10186440	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165931	exon8	c.T993G	p.D331E	.	.	.
SLC9A4	389015	broad.mit.edu	36	2	102491059	102491059	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011552	exon5	c.C1288T	p.R430X	.	.	.
TGFBRAP1	9392	broad.mit.edu	36	2	105258559	105258559	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004257	exon8	c.G1555A	p.D519N	.	.	.
NCK2	8440	broad.mit.edu	36	2	105864349	105864349	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004720	exon3	c.C360T	p.F120F	.	.	.
SLC5A7	60482	broad.mit.edu	36	2	107984832	107984832	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021815	exon6	c.C645T	p.I215I	.	.	.
SULT1C2	6819	broad.mit.edu	36	2	108283749	108283749	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001056	exon4	c.C301T	p.P101S	.	.	.
SULT1C4	27233	broad.mit.edu	36	2	108364734	108364734	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006588	exon2	c.G254A	p.R85Q	.	.	.
LIMS1	3987	broad.mit.edu	36	2	108659536	108659536	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193483	exon7	c.C724T	p.R242C	.	.	.
RANBP2	5903	broad.mit.edu	36	2	108747034	108747034	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006267	exon20	c.C3607T	p.R1203C	.	.	.
NPHP1	4867	broad.mit.edu	36	2	110284720	110284720	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128178	exon5	c.C474T	p.I158I	.	.	.
BUB1	699	broad.mit.edu	36	2	111132759	111132759	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004336	exon12	c.C1310A	p.S437Y	.	.	.
ROCK2	9475	broad.mit.edu	36	2	11255196	11255196	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004850	exon26	c.G3186T	p.E1062D	.	.	.
ZC3H6	376940	broad.mit.edu	36	2	112799015	112799015	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198581	exon11	c.G1856T	p.G619V	.	.	.
ZC3H6	376940	broad.mit.edu	36	2	112805517	112805517	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198581	exon12	c.G2551A	p.D851N	.	.	.
IL1F5	26525	broad.mit.edu	36	2	113536669	113536669	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012275	exon5	c.G412A	p.E138K	.	.	.
SNTG2	54221	broad.mit.edu	36	2	1151257	1151257	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018968	exon7	c.C435T	p.G145G	.	.	.
DPP10	57628	broad.mit.edu	36	2	116163746	116163746	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178036	exon7	c.C305T	p.S102L	.	.	.
GREB1	9687	broad.mit.edu	36	2	11634027	11634027	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148903	exon5	c.G552T	p.K184N	.	.	.
GREB1	9687	broad.mit.edu	36	2	11638372	11638372	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148903	exon7	c.G864T	p.K288N	.	.	.
GREB1	9687	broad.mit.edu	36	2	11650417	11650417	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014668	exon11	c.G1410A	p.S470S	.	.	.
MARCO	8685	broad.mit.edu	36	2	119416434	119416434	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006770	exon1	c.G88A	p.E30K	.	.	.
C2orf76	130355	broad.mit.edu	36	2	119813925	119813925	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017927	exon3	c.C81T	p.H27H	.	.	.
CLASP1	23332	broad.mit.edu	36	2	121837337	121837337	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142274	exon35	c.C3886T	p.R1296X	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	124908558	124908558	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130773	exon5	c.G557T	p.R186L	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	124948907	124948907	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130773	exon7	c.G1040A	p.R347Q	.	.	.
CYP27C1	339761	broad.mit.edu	36	2	127677573	127677573	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001665	exon2	c.G23A	p.R8K	.	.	.
PROC	5624	broad.mit.edu	36	2	127901171	127901171	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000312	exon8	c.G699T	p.K233N	.	.	.
WDR33	55339	broad.mit.edu	36	2	128195972	128195972	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018383	exon15	c.G1579T	p.E527X	.	.	.
UGGT1	56886	broad.mit.edu	36	2	128661519	128661519	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020120	exon40	c.G4503A	p.P1501P	.	.	.
UGGT1	56886	broad.mit.edu	36	2	128663781	128663781	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020120	exon41	c.T4663G	p.L1555V	.	.	.
POTEF	728378	broad.mit.edu	36	2	130549493	130549493	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099771	exon17	c.G2022T	p.K674N	.	.	.
FAM123C	205147	broad.mit.edu	36	2	131236877	131236877	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105195	exon2	c.C762T	p.F254F	.	.	.
ARHGEF4	50649	broad.mit.edu	36	2	131420586	131420586	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015320	exon4	c.C335A	p.S112Y	.	.	.
GPR39	2863	broad.mit.edu	36	2	133119601	133119601	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001508	exon2	c.A1314G	p.K438K	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133256922	133256922	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207363	exon14	c.C3932A	p.S1311Y	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133258593	133258593	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207363	exon14	c.T2261C	p.V754A	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133264090	133264090	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207481	exon13	c.C1068T	p.H356H	.	.	.
YSK4	80122	broad.mit.edu	36	2	135460282	135460282	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025052	exon7	c.C2630A	p.S877Y	.	.	.
UBXN4	23190	broad.mit.edu	36	2	136228214	136228214	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014607	exon4	c.T230C	p.V77A	.	.	.
LCT	3938	broad.mit.edu	36	2	136291930	136291930	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002299	exon6	c.C1158T	p.F386F	.	.	.
LCT	3938	broad.mit.edu	36	2	136307165	136307165	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002299	exon2	c.T706G	p.S236A	.	.	.
THSD7B	80731	broad.mit.edu	36	2	137705175	137705175	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080427	exon7	c.C1722T	p.S574S	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140824931	140824931	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018557	exon77	c.G11797T	p.D3933Y	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140844854	140844854	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018557	exon71	c.G10903T	p.D3635Y	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140930635	140930635	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018557	exon62	c.A9822G	p.K3274K	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141360342	141360342	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018557	exon24	c.C3799T	p.R1267C	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141382069	141382069	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018557	exon22	c.G3367A	p.E1123K	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141468056	141468056	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018557	exon16	c.C2622T	p.S874S	.	.	.
KYNU	8942	broad.mit.edu	36	2	143460049	143460049	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001032998	exon10	c.G891A	p.T297T	.	.	.
GTDC1	79712	broad.mit.edu	36	2	144426834	144426834	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164629	exon10	c.T1177G	p.L393V	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144872862	144872862	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171653	exon7	c.C2290A	p.L764I	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144873724	144873724	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171653	exon7	c.A1428G	p.E476E	.	.	.
ORC4	5000	broad.mit.edu	36	2	148409713	148409713	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181742	exon14	c.G1147T	p.E383X	.	.	.
MBD5	55777	broad.mit.edu	36	2	148963795	148963795	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018328	exon12	c.C3425T	p.A1142V	.	.	.
EPC2	26122	broad.mit.edu	36	2	149245399	149245399	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015630	exon10	c.T1693G	p.L565V	.	.	.
MMADHC	27249	broad.mit.edu	36	2	150144403	150144403	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015702	exon4	c.C160T	p.R54X	.	.	.
RIF1	55183	broad.mit.edu	36	2	152001638	152001638	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177664	exon12	c.C1247T	p.S416L	.	.	.
RIF1	55183	broad.mit.edu	36	2	152022650	152022650	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177664	exon24	c.C2782T	p.R928X	.	.	.
RIF1	55183	broad.mit.edu	36	2	152030523	152030523	+	Silent	SNP	C	T	T	rs61748235	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177664	exon30	c.C6243T	p.D2081D	.	.	.
NEB	4703	broad.mit.edu	36	2	152092244	152092244	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164507	exon147	c.C21837T	p.S7279S	.	.	.
NEB	4703	broad.mit.edu	36	2	152242459	152242459	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164507	exon34	c.G3640A	p.E1214K	.	.	.
NEB	4703	broad.mit.edu	36	2	152252389	152252389	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164507	exon26	c.C2520T	p.S840S	.	.	.
DDX1	1653	broad.mit.edu	36	2	15660202	15660202	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004939	exon7	c.G387A	p.M129I	.	.	.
ERMN	57471	broad.mit.edu	36	2	157886536	157886536	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020711	exon3	c.G348T	p.E116D	.	.	.
PKP4	8502	broad.mit.edu	36	2	159190124	159190124	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003628	exon7	c.C1092T	p.F364F	.	.	.
MARCH7	64844	broad.mit.edu	36	2	160310668	160310668	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022826	exon4	c.G488A	p.R163Q	.	.	.
LY75	4065	broad.mit.edu	36	2	160446972	160446972	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198760	exon7	c.A1155G	p.A385A	.	.	.
FAP	2191	broad.mit.edu	36	2	162767631	162767631	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004460	exon14	c.C1220T	p.S407L	.	.	.
IFIH1	64135	broad.mit.edu	36	2	162838670	162838670	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022168	exon12	c.C2335T	p.R779C	.	.	.
IFIH1	64135	broad.mit.edu	36	2	162842386	162842386	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022168	exon10	c.C1829T	p.A610V	.	.	.
KCNH7	90134	broad.mit.edu	36	2	163401499	163401499	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173162	exon2	c.C101T	p.A34V	.	.	.
FIGN	55137	broad.mit.edu	36	2	164175161	164175161	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018086	exon3	c.T1427G	p.I476S	.	.	.
COBLL1	22837	broad.mit.edu	36	2	165260066	165260066	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014900	exon12	c.A2196C	p.K732N	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165662193	165662193	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006922	exon23	c.A4054G	p.M1352V	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165873965	165873965	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040143	exon5	c.G650A	p.R217Q	.	.	.
FAM49A	81553	broad.mit.edu	36	2	16606766	16606766	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030797	exon6	c.C423T	p.F141F	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166557144	166557144	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165964	exon26	c.C4803T	p.F1601F	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166574560	166574560	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165964	exon20	c.A3833G	p.Y1278C	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166607137	166607137	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165964	exon12	c.C2003A	p.S668Y	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166612424	166612424	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165964	exon8	c.C1129T	p.R377X	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166616493	166616493	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165964	exon6	c.T946G	p.S316A	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166764060	166764060	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002977	exon27	c.T5302G	p.F1768V	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166764273	166764273	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002977	exon27	c.C5089A	p.L1697I	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166793590	166793590	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002977	exon22	c.G4030A	p.D1344N	.	.	.
SCN7A	6332	broad.mit.edu	36	2	166992583	166992583	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002976	exon17	c.T2814G	p.C938W	.	.	.
PXDN	7837	broad.mit.edu	36	2	1670426	1670426	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012293	exon4	c.C401T	p.A134V	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167782945	167782945	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199143	exon6	c.C846T	p.C282C	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167810570	167810570	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199144	exon7	c.C3756A	p.I1252I	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167810645	167810645	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199144	exon7	c.C3831T	p.F1277F	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167812261	167812261	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199144	exon7	c.C5447T	p.A1816V	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167813603	167813603	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199144	exon7	c.T6789G	p.S2263R	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167814723	167814723	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199144	exon7	c.G7909A	p.D2637N	.	.	.
STK39	27347	broad.mit.edu	36	2	168529444	168529444	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013233	exon17	c.G1537A	p.A513T	.	.	.
ABCB11	8647	broad.mit.edu	36	2	169489462	169489462	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003742	exon27	c.T3716C	p.I1239T	.	.	.
LRP2	4036	broad.mit.edu	36	2	169837755	169837755	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004525	exon15	c.A2044C	p.N682H	.	.	.
LRP2	4036	broad.mit.edu	36	2	169855729	169855729	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004525	exon8	c.A794C	p.K265T	.	.	.
PPIG	9360	broad.mit.edu	36	2	170201291	170201291	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004792	exon14	c.T1277G	p.V426G	.	.	.
KLHL23	151230	broad.mit.edu	36	2	170300515	170300515	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199290	exon4	c.G745A	p.E249K	.	.	.
UBR3	130507	broad.mit.edu	36	2	170523251	170523251	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172070	exon24	c.G3603T	p.Q1201H	.	.	.
MYO3B	140469	broad.mit.edu	36	2	170966248	170966248	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171642	exon18	c.C1930A	p.L644M	.	.	.
MYO3B	140469	broad.mit.edu	36	2	171064424	171064424	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171642	exon27	c.T3149C	p.V1050A	.	.	.
METTL8	79828	broad.mit.edu	36	2	171904260	171904260	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024770	exon4	c.C286A	p.H96N	.	.	.
SLC25A12	8604	broad.mit.edu	36	2	172401889	172401889	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003705	exon6	c.G600T	p.E200D	.	.	.
RAPGEF4	11069	broad.mit.edu	36	2	173368051	173368051	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007023	exon2	c.G118T	p.E40X	.	.	.
RAPGEF4	11069	broad.mit.edu	36	2	173556527	173556527	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007023	exon11	c.T1062G	p.I354M	.	.	.
RAPGEF4	11069	broad.mit.edu	36	2	173591632	173591632	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007023	exon22	c.C2011T	p.L671L	.	.	.
CIR1	9541	broad.mit.edu	36	2	174968528	174968528	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004882	exon1	c.A69C	p.K23N	.	.	.
CHN1	1123	broad.mit.edu	36	2	175373249	175373249	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001822	exon13	c.C1221T	p.H407H	.	.	.
CHN1	1123	broad.mit.edu	36	2	175488114	175488114	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001822	exon5	c.G178A	p.D60N	.	.	.
RAD51AP2	729475	broad.mit.edu	36	2	17560855	17560855	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099218	exon1	c.G2309A	p.G770E	.	.	.
RAD51AP2	729475	broad.mit.edu	36	2	17561589	17561589	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099218	exon1	c.A1575C	p.K525N	.	.	.
RAD51AP2	729475	broad.mit.edu	36	2	17562652	17562652	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099218	exon1	c.G512T	p.R171I	.	.	.
MTX2	10651	broad.mit.edu	36	2	176899801	176899801	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006554	exon5	c.A211G	p.K71E	.	.	.
NFE2L2	4780	broad.mit.edu	36	2	177803964	177803964	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006164	exon5	c.A1613C	p.K538T	.	.	.
TTC30B	150737	broad.mit.edu	36	2	178124924	178124924	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152517	exon1	c.G814T	p.E272X	.	.	.
TTC30B	150737	broad.mit.edu	36	2	178125300	178125300	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152517	exon1	c.G438T	p.E146D	.	.	.
PDE11A	50940	broad.mit.edu	36	2	178236862	178236862	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077196	exon16	c.G1292A	p.S431N	.	.	.
PDE11A	50940	broad.mit.edu	36	2	178471040	178471040	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077197	exon5	c.C543T	p.I181I	.	.	.
TTN	7273	broad.mit.edu	36	2	179104281	179104281	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon186	c.G78111T	p.Q26037H	.	.	.
TTN	7273	broad.mit.edu	36	2	179107926	179107926	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon186	c.T74466G	p.N24822K	.	.	.
TTN	7273	broad.mit.edu	36	2	179130072	179130072	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon158	c.T60859C	p.S20287P	.	.	.
TTN	7273	broad.mit.edu	36	2	179134507	179134507	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.C57402T	p.F19134F	.	.	.
TTN	7273	broad.mit.edu	36	2	179136079	179136079	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.G55830T	p.X18610Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179145417	179145417	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.G46492T	p.E15498X	.	.	.
TTN	7273	broad.mit.edu	36	2	179145913	179145913	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.C45996T	p.S15332S	.	.	.
TTN	7273	broad.mit.edu	36	2	179148587	179148587	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.C43322A	p.S14441Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179148909	179148909	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.T43000G	p.F14334V	.	.	.
TTN	7273	broad.mit.edu	36	2	179152592	179152592	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon147	c.G40382T	p.R13461I	.	.	.
TTN	7273	broad.mit.edu	36	2	179166980	179166980	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon125	c.G31190T	p.R10397I	.	.	.
TTN	7273	broad.mit.edu	36	2	179181303	179181303	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon103	c.C25357T	p.R8453C	.	.	.
TTN	7273	broad.mit.edu	36	2	179184802	179184802	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon96	c.C23284T	p.R7762W	.	.	.
TTN	7273	broad.mit.edu	36	2	179193514	179193514	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon76	c.C18784T	p.R6262C	.	.	.
TTN	7273	broad.mit.edu	36	2	179203836	179203836	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon66	c.C16899A	p.I5633I	.	.	.
TTN	7273	broad.mit.edu	36	2	179207453	179207453	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon58	c.C15105A	p.I5035I	.	.	.
TTN	7273	broad.mit.edu	36	2	179207596	179207596	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon58	c.G14962A	p.E4988K	.	.	.
TTN	7273	broad.mit.edu	36	2	179277501	179277501	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133378	exon102	c.C26211T	p.S8737S	.	.	.
TTN	7273	broad.mit.edu	36	2	179279702	179279702	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133378	exon99	c.C25412T	p.A8471V	.	.	.
TTN	7273	broad.mit.edu	36	2	179283846	179283846	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133378	exon95	c.C24491T	p.A8164V	.	.	.
TTN	7273	broad.mit.edu	36	2	179287270	179287270	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133378	exon88	c.G22744A	p.V7582I	.	.	.
TTN	7273	broad.mit.edu	36	2	179287418	179287418	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133378	exon88	c.C22596T	p.I7532I	.	.	.
TTN	7273	broad.mit.edu	36	2	179296143	179296143	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133378	exon72	c.T18104C	p.V6035A	.	.	.
TTN	7273	broad.mit.edu	36	2	179303597	179303597	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133378	exon58	c.C14176T	p.H4726Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179306489	179306489	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133378	exon51	c.A12044C	p.E4015A	.	.	.
TTN	7273	broad.mit.edu	36	2	179307856	179307856	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133378	exon48	c.A11308G	p.T3770A	.	.	.
TTN	7273	broad.mit.edu	36	2	179313811	179313811	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon45	c.C11305A	p.L3769I	.	.	.
TTN	7273	broad.mit.edu	36	2	179314242	179314242	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon45	c.A10874G	p.H3625R	.	.	.
TTN	7273	broad.mit.edu	36	2	179319326	179319326	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133379	exon46	c.T16046C	p.V5349A	.	.	.
TTN	7273	broad.mit.edu	36	2	179319719	179319719	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133379	exon46	c.G15653A	p.R5218Q	.	.	.
TTN	7273	broad.mit.edu	36	2	179320713	179320713	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133379	exon46	c.A14659G	p.I4887V	.	.	.
TTN	7273	broad.mit.edu	36	2	179330706	179330706	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133432	exon44	c.A10348G	p.I3450V	.	.	.
TTN	7273	broad.mit.edu	36	2	179339478	179339478	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133379	exon41	c.G9578A	p.R3193Q	.	.	.
TTN	7273	broad.mit.edu	36	2	179348592	179348592	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133379	exon28	c.G6244A	p.E2082K	.	.	.
TTN	7273	broad.mit.edu	36	2	179348983	179348983	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133379	exon28	c.A5853G	p.V1951V	.	.	.
TTN	7273	broad.mit.edu	36	2	179354159	179354159	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133379	exon21	c.G3457T	p.E1153X	.	.	.
TTN	7273	broad.mit.edu	36	2	179372840	179372840	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133379	exon5	c.C626T	p.S209L	.	.	.
TTN	7273	broad.mit.edu	36	2	179377597	179377597	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133379	exon2	c.G18A	p.P6P	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179410395	179410395	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173648	exon23	c.C3796A	p.L1266I	.	.	.
CWC22	57703	broad.mit.edu	36	2	180559695	180559695	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020943	exon4	c.C178T	p.R60C	.	.	.
CERKL	375298	broad.mit.edu	36	2	182117733	182117733	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201548	exon11	c.G1304A	p.R435Q	.	.	.
PDE1A	5136	broad.mit.edu	36	2	182759552	182759552	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005019	exon12	c.G1264A	p.D422N	.	.	.
DNAJC10	54431	broad.mit.edu	36	2	183301853	183301853	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018981	exon7	c.G520T	p.E174X	.	.	.
DNAJC10	54431	broad.mit.edu	36	2	183313344	183313344	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018981	exon12	c.C1061T	p.S354L	.	.	.
DNAJC10	54431	broad.mit.edu	36	2	183329322	183329322	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018981	exon18	c.A1690G	p.T564A	.	.	.
NCKAP1	10787	broad.mit.edu	36	2	183575166	183575166	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013436	exon5	c.G446A	p.R149Q	.	.	.
DUSP19	142679	broad.mit.edu	36	2	183668569	183668569	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080876	exon4	c.C592T	p.R198C	.	.	.
ZNF804A	91752	broad.mit.edu	36	2	185506608	185506608	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194250	exon3	c.C289T	p.R97X	.	.	.
ZNF804A	91752	broad.mit.edu	36	2	185509278	185509278	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194250	exon4	c.G910T	p.D304Y	.	.	.
ZNF804A	91752	broad.mit.edu	36	2	185510722	185510722	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194250	exon4	c.T2354C	p.L785S	.	.	.
FSIP2	401024	broad.mit.edu	36	2	186380156	186380156	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173651	exon17	c.C18145T	p.R6049C	.	.	.
FSIP2	401024	broad.mit.edu	36	2	186381140	186381140	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173651	exon17	c.T19129G	p.L6377V	.	.	.
FAM171B	165215	broad.mit.edu	36	2	187313317	187313317	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177454	exon2	c.G356T	p.S119I	.	.	.
FAM171B	165215	broad.mit.edu	36	2	187324244	187324244	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177454	exon5	c.G863A	p.R288H	.	.	.
ZSWIM2	151112	broad.mit.edu	36	2	187406975	187406975	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182521	exon6	c.A771G	p.L257L	.	.	.
WDR75	84128	broad.mit.edu	36	2	190038083	190038083	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032168	exon12	c.T1147G	p.Y383D	.	.	.
PMS1	5378	broad.mit.edu	36	2	190427245	190427245	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000534	exon9	c.G1002A	p.T334T	.	.	.
SLC39A10	57181	broad.mit.edu	36	2	196253541	196253541	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127257	exon2	c.G530A	p.R177H	.	.	.
SLC39A10	57181	broad.mit.edu	36	2	196301240	196301240	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127257	exon9	c.T2259C	p.G753G	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196468063	196468063	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018897	exon30	c.T4778G	p.L1593R	.	.	.
HECW2	57520	broad.mit.edu	36	2	196774272	196774272	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020760	exon29	c.G4693T	p.E1565X	.	.	.
HECW2	57520	broad.mit.edu	36	2	196815124	196815124	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020760	exon20	c.C3579T	p.F1193F	.	.	.
HECW2	57520	broad.mit.edu	36	2	196895460	196895460	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020760	exon7	c.C871T	p.R291X	.	.	.
HECW2	57520	broad.mit.edu	36	2	197006349	197006349	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020760	exon2	c.G44A	p.R15Q	.	.	.
C2orf66	401027	broad.mit.edu	36	2	197382232	197382232	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213608	exon1	c.G125T	p.R42I	.	.	.
SF3B1	23451	broad.mit.edu	36	2	197971001	197971001	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012433	exon22	c.T3219G	p.I1073M	.	.	.
SF3B1	23451	broad.mit.edu	36	2	197978407	197978407	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012433	exon10	c.G1274A	p.R425Q	.	.	.
MOBKL3	25843	broad.mit.edu	36	2	198096611	198096611	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015387	exon2	c.G79A	p.D27N	.	.	.
PLCL1	5334	broad.mit.edu	36	2	198657891	198657891	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006226	exon2	c.C1405T	p.R469X	.	.	.
PLCL1	5334	broad.mit.edu	36	2	198662013	198662013	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006226	exon3	c.C2902T	p.L968L	.	.	.
WDR35	57539	broad.mit.edu	36	2	19977389	19977389	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001006657	exon27	c.G3285T	p.E1095D	.	.	.
MATN3	4148	broad.mit.edu	36	2	20063696	20063696	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002381	exon5	c.A1155T	p.K385N	.	.	.
FAM126B	285172	broad.mit.edu	36	2	201554469	201554469	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173822	exon12	c.T1362C	p.S454S	.	.	.
TRAK2	66008	broad.mit.edu	36	2	201971277	201971277	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015049	exon6	c.C526T	p.R176X	.	.	.
ALS2	57679	broad.mit.edu	36	2	202311692	202311692	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020919	exon12	c.C2363A	p.S788Y	.	.	.
ALS2	57679	broad.mit.edu	36	2	202330472	202330472	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020919	exon5	c.G1369A	p.E457K	.	.	.
BMPR2	659	broad.mit.edu	36	2	203129143	203129143	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001204	exon12	c.A2510G	p.N837S	.	.	.
NBEAL1	65065	broad.mit.edu	36	2	203748209	203748209	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114132	exon41	c.C6331T	p.R2111C	.	.	.
RAPH1	65059	broad.mit.edu	36	2	204062697	204062697	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203365	exon4	c.T587C	p.V196A	.	.	.
CD28	940	broad.mit.edu	36	2	204299626	204299626	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006139	exon2	c.G78A	p.S26S	.	.	.
CD28	940	broad.mit.edu	36	2	204307862	204307862	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006139	exon4	c.C645T	p.F215F	.	.	.
PARD3B	117583	broad.mit.edu	36	2	205874656	205874656	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_057177	exon17	c.C2409T	p.F803F	.	.	.
NDUFS1	4719	broad.mit.edu	36	2	206699735	206699735	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005006	exon17	c.C1963T	p.R655X	.	.	.
NDUFS1	4719	broad.mit.edu	36	2	206715756	206715756	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005006	exon11	c.C1032T	p.G344G	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206880569	206880569	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020923	exon5	c.G3072A	p.K1024K	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206881383	206881383	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020923	exon5	c.G3886A	p.V1296I	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206881842	206881842	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020923	exon5	c.G4345A	p.V1449I	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206882464	206882464	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020923	exon5	c.A4967C	p.K1656T	.	.	.
DYTN	391475	broad.mit.edu	36	2	207236234	207236234	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001093730	exon11	c.C1271T	p.A424V	.	.	.
CREB1	1385	broad.mit.edu	36	2	208169977	208169977	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_134442	exon9	c.A976G	p.I326V	.	.	.
FAM119A	151194	broad.mit.edu	36	2	208186151	208186151	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127395	exon4	c.G521A	p.R174Q	.	.	.
CRYGB	1419	broad.mit.edu	36	2	208715671	208715671	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005210	exon3	c.T464C	p.F155S	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208918094	208918094	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015040	exon33	c.G5042A	p.R1681Q	.	.	.
MAP2	4133	broad.mit.edu	36	2	210268884	210268884	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002374	exon7	c.C3745T	p.L1249F	.	.	.
MAP2	4133	broad.mit.edu	36	2	210269594	210269594	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002374	exon8	c.C4264T	p.L1422F	.	.	.
MAP2	4133	broad.mit.edu	36	2	210278690	210278690	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031847	exon8	c.A658G	p.T220A	.	.	.
MAP2	4133	broad.mit.edu	36	2	210283082	210283082	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031847	exon9	c.C864T	p.V288V	.	.	.
UNC80	285175	broad.mit.edu	36	2	210350449	210350449	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182587	exon4	c.G521A	p.R174Q	.	.	.
RPE	6120	broad.mit.edu	36	2	210589064	210589064	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199229	exon3	c.C325T	p.R109W	.	.	.
APOB	338	broad.mit.edu	36	2	21079100	21079100	+	Silent	SNP	C	T	T	rs56675344	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000384	exon29	c.G12699A	p.S4233S	.	.	.
APOB	338	broad.mit.edu	36	2	21081638	21081638	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000384	exon26	c.C11607T	p.F3869F	.	.	.
APOB	338	broad.mit.edu	36	2	21082977	21082977	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000384	exon26	c.T10268C	p.V3423A	.	.	.
APOB	338	broad.mit.edu	36	2	21083519	21083519	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000384	exon26	c.C9726T	p.L3242L	.	.	.
APOB	338	broad.mit.edu	36	2	21084948	21084948	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000384	exon26	c.C8297A	p.S2766Y	.	.	.
APOB	338	broad.mit.edu	36	2	21088316	21088316	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000384	exon26	c.G4929A	p.A1643A	.	.	.
APOB	338	broad.mit.edu	36	2	21088845	21088845	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000384	exon26	c.C4400T	p.A1467V	.	.	.
APOB	338	broad.mit.edu	36	2	21088947	21088947	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000384	exon26	c.C4298T	p.S1433L	.	.	.
APOB	338	broad.mit.edu	36	2	21108799	21108799	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000384	exon10	c.G1284T	p.E428D	.	.	.
ERBB4	2066	broad.mit.edu	36	2	211959986	211959986	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005235	exon27	c.C3318A	p.C1106X	.	.	.
ERBB4	2066	broad.mit.edu	36	2	212203465	212203465	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005235	exon17	c.G2046T	p.K682N	.	.	.
IKZF2	22807	broad.mit.edu	36	2	213580736	213580736	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016260	exon8	c.C1174T	p.R392X	.	.	.
IKZF2	22807	broad.mit.edu	36	2	213581035	213581035	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016260	exon8	c.T875C	p.F292S	.	.	.
SPAG16	79582	broad.mit.edu	36	2	214983280	214983280	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024532	exon16	c.C1892A	p.S631Y	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215598705	215598705	+	Silent	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173076	exon11	c.T1224G	p.S408S	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215637080	215637080	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173076	exon3	c.G271T	p.D91Y	.	.	.
ATIC	471	broad.mit.edu	36	2	215911784	215911784	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004044	exon12	c.G1136A	p.R379Q	.	.	.
FN1	2335	broad.mit.edu	36	2	215981343	215981343	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_212476	exon16	c.G2351A	p.R784Q	.	.	.
FN1	2335	broad.mit.edu	36	2	215997160	215997160	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_212476	exon8	c.G1170A	p.S390S	.	.	.
FN1	2335	broad.mit.edu	36	2	216004847	216004847	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_212476	exon4	c.T501G	p.C167W	.	.	.
MREG	55686	broad.mit.edu	36	2	216517913	216517913	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018000	exon5	c.G563A	p.R188Q	.	.	.
ZNF142	7701	broad.mit.edu	36	2	219216383	219216383	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105537	exon8	c.C3100A	p.L1034I	.	.	.
PRKAG3	53632	broad.mit.edu	36	2	219403799	219403799	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017431	exon3	c.G143T	p.R48I	.	.	.
FAM134A	79137	broad.mit.edu	36	2	219753645	219753645	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024293	exon5	c.C565T	p.R189X	.	.	.
ANKZF1	55139	broad.mit.edu	36	2	219809318	219809318	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042410	exon14	c.A2088C	p.Q696H	.	.	.
STK16	8576	broad.mit.edu	36	2	219821434	219821434	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008910	exon8	c.A827G	p.D276G	.	.	.
SPEG	10290	broad.mit.edu	36	2	220041650	220041650	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005876	exon11	c.C3249T	p.F1083F	.	.	.
FARSB	10056	broad.mit.edu	36	2	223172924	223172924	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005687	exon16	c.G1585T	p.D529Y	.	.	.
SCG2	7857	broad.mit.edu	36	2	224170447	224170447	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003469	exon2	c.G1798T	p.E600X	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225360288	225360288	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014689	exon49	c.C5489T	p.A1830V	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225380886	225380886	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014689	exon32	c.C3571T	p.R1191X	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226086486	226086486	+	Missense_Mutation	SNP	G	T	T	rs61753537	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020864	exon3	c.G377T	p.G126V	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226154966	226154966	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020864	exon4	c.C589T	p.R197X	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226155762	226155762	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020864	exon4	c.C1385T	p.S462L	.	.	.
AGFG1	3267	broad.mit.edu	36	2	228106515	228106515	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004504	exon7	c.G821T	p.S274I	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228591025	228591025	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142644	exon7	c.C2789T	p.A930V	.	.	.
PID1	55022	broad.mit.edu	36	2	229598661	229598661	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100818	exon3	c.C585T	p.S195S	.	.	.
DNER	92737	broad.mit.edu	36	2	230050113	230050113	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139072	exon7	c.C1248T	p.C416C	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230431954	230431954	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004238	exon3	c.G679T	p.D227Y	.	.	.
SP140	11262	broad.mit.edu	36	2	230842507	230842507	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007237	exon13	c.A1257T	p.E419D	.	.	.
SP100	6672	broad.mit.edu	36	2	231088103	231088103	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003113	exon25	c.T2144G	p.F715C	.	.	.
ARMC9	80210	broad.mit.edu	36	2	231844012	231844012	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025139	exon13	c.T1193G	p.F398C	.	.	.
NCL	4691	broad.mit.edu	36	2	232034837	232034837	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005381	exon3	c.G271A	p.A91T	.	.	.
DIS3L2	129563	broad.mit.edu	36	2	232660593	232660593	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152383	exon6	c.C519T	p.S173S	.	.	.
CHRND	1144	broad.mit.edu	36	2	233101581	233101581	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000751	exon5	c.C480T	p.F160F	.	.	.
INPP5D	3635	broad.mit.edu	36	2	233742738	233742738	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005541	exon10	c.G1180A	p.E394K	.	.	.
ATG16L1	55054	broad.mit.edu	36	2	233854537	233854537	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017974	exon10	c.A1051G	p.T351A	.	.	.
ATG16L1	55054	broad.mit.edu	36	2	233863722	233863722	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017974	exon13	c.C1357T	p.R453C	.	.	.
USP40	55230	broad.mit.edu	36	2	234085101	234085101	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018218	exon18	c.C2311T	p.R771C	.	.	.
USP40	55230	broad.mit.edu	36	2	234094481	234094481	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018218	exon15	c.G2012T	p.R671I	.	.	.
UGT1A7	54577	broad.mit.edu	36	2	234256083	234256083	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019077	exon1	c.G761A	p.R254Q	.	.	.
UGT1A3	54659	broad.mit.edu	36	2	234302722	234302722	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019093	exon1	c.G211T	p.E71X	.	.	.
TRPM8	79054	broad.mit.edu	36	2	234499930	234499930	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024080	exon2	c.T9C	p.F3F	.	.	.
TRPM8	79054	broad.mit.edu	36	2	234512485	234512485	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024080	exon5	c.C453T	p.G151G	.	.	.
TRPM8	79054	broad.mit.edu	36	2	234534335	234534335	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024080	exon12	c.G1539T	p.K513N	.	.	.
SH3BP4	23677	broad.mit.edu	36	2	235615739	235615739	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014521	exon4	c.C1587T	p.F529F	.	.	.
AGAP1	116987	broad.mit.edu	36	2	236456756	236456756	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037131	exon10	c.C1079T	p.S360L	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237909737	237909737	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_057166	exon37	c.G6924A	p.A2308A	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237950420	237950420	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_057166	exon4	c.G983A	p.R328Q	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237961561	237961561	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_057167	exon3	c.G97T	p.D33Y	.	.	.
LRRFIP1	9208	broad.mit.edu	36	2	238333543	238333543	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001137552	exon10	c.A845C	p.K282T	.	.	.
RBM44	375316	broad.mit.edu	36	2	238391319	238391319	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080504	exon3	c.G1021T	p.D341Y	.	.	.
RBM44	375316	broad.mit.edu	36	2	238393678	238393678	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080504	exon5	c.C1861T	p.R621C	.	.	.
RBM44	375316	broad.mit.edu	36	2	238402651	238402651	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080504	exon13	c.G2656T	p.E886X	.	.	.
PER2	8864	broad.mit.edu	36	2	238835677	238835677	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022817	exon11	c.C1201T	p.R401C	.	.	.
OR6B2	389090	broad.mit.edu	36	2	240617981	240617981	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005853	exon1	c.A539G	p.D180G	.	.	.
OR6B3	150681	broad.mit.edu	36	2	240633478	240633478	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173351	exon1	c.C685T	p.P229S	.	.	.
OR6B3	150681	broad.mit.edu	36	2	240633878	240633878	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173351	exon1	c.C285T	p.V95V	.	.	.
OR6B3	150681	broad.mit.edu	36	2	240633980	240633980	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173351	exon1	c.C183T	p.Y61Y	.	.	.
SNED1	25992	broad.mit.edu	36	2	241641404	241641404	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080437	exon16	c.C2245T	p.P749S	.	.	.
PASK	23178	broad.mit.edu	36	2	241715138	241715138	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015148	exon10	c.G1865A	p.R622Q	.	.	.
HDLBP	3069	broad.mit.edu	36	2	241841576	241841576	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005336	exon10	c.G1198A	p.E400K	.	.	.
FARP2	9855	broad.mit.edu	36	2	241991924	241991924	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014808	exon3	c.C192T	p.C64C	.	.	.
ITSN2	50618	broad.mit.edu	36	2	24297321	24297321	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019595	exon29	c.C3615T	p.V1205V	.	.	.
NCOA1	8648	broad.mit.edu	36	2	24781495	24781495	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003743	exon10	c.G986A	p.R329K	.	.	.
ADCY3	109	broad.mit.edu	36	2	24897957	24897957	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004036	exon19	c.G3060A	p.A1020A	.	.	.
DNAJC27	51277	broad.mit.edu	36	2	25039811	25039811	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198559	exon3	c.C207A	p.I69I	.	.	.
ASXL2	55252	broad.mit.edu	36	2	25844020	25844020	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018263	exon7	c.A711C	p.K237N	.	.	.
EPT1	85465	broad.mit.edu	36	2	26462837	26462837	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033505	exon9	c.G1024A	p.V342I	.	.	.
C2orf39	92749	broad.mit.edu	36	2	26497670	26497670	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145038	exon3	c.A254C	p.K85T	.	.	.
C2orf39	92749	broad.mit.edu	36	2	26527011	26527011	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145038	exon13	c.C1647A	p.F549L	.	.	.
AGBL5	60509	broad.mit.edu	36	2	27146580	27146580	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021831	exon15	c.C2606A	p.P869H	.	.	.
C2orf53	339779	broad.mit.edu	36	2	27213568	27213568	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178553	exon3	c.A1134G	p.P378P	.	.	.
CAD	790	broad.mit.edu	36	2	27300332	27300332	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004341	exon8	c.G1039A	p.E347K	.	.	.
IFT172	26160	broad.mit.edu	36	2	27523946	27523946	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015662	exon42	c.G4599A	p.T1533T	.	.	.
IFT172	26160	broad.mit.edu	36	2	27535196	27535196	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015662	exon26	c.C2831T	p.A944V	.	.	.
IFT172	26160	broad.mit.edu	36	2	27556499	27556499	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015662	exon9	c.C807T	p.I269I	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27655489	27655489	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032266	exon1	c.G2546A	p.R849Q	.	.	.
ZNF512	84450	broad.mit.edu	36	2	27692686	27692686	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032434	exon12	c.T1287G	p.S429S	.	.	.
GPN1	11321	broad.mit.edu	36	2	27726537	27726537	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145049	exon12	c.C806T	p.S269L	.	.	.
WDR43	23160	broad.mit.edu	36	2	28988999	28988999	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015131	exon4	c.T525C	p.C175C	.	.	.
FAM179A	165186	broad.mit.edu	36	2	29098625	29098625	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199280	exon11	c.G1458A	p.S486S	.	.	.
C2orf71	388939	broad.mit.edu	36	2	29150547	29150547	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029883	exon1	c.C85T	p.R29W	.	.	.
CLIP4	79745	broad.mit.edu	36	2	29210176	29210176	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024692	exon5	c.G519A	p.S173S	.	.	.
CLIP4	79745	broad.mit.edu	36	2	29250752	29250752	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024692	exon15	c.G1733T	p.R578I	.	.	.
ALK	238	broad.mit.edu	36	2	29270138	29270138	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004304	exon29	c.C4319T	p.A1440V	.	.	.
CAPN13	92291	broad.mit.edu	36	2	30829477	30829477	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144575	exon10	c.G1033A	p.E345K	.	.	.
GALNT14	79623	broad.mit.edu	36	2	31032299	31032299	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024572	exon5	c.G515A	p.R172H	.	.	.
XDH	7498	broad.mit.edu	36	2	31421089	31421089	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000379	exon31	c.G3369A	p.M1123I	.	.	.
MEMO1	51072	broad.mit.edu	36	2	31948479	31948479	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015955	exon8	c.A704G	p.Y235C	.	.	.
SLC30A6	55676	broad.mit.edu	36	2	32298810	32298810	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193513	exon15	c.C1030T	p.R344X	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32458726	32458726	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016252	exon3	c.C509G	p.A170G	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32610108	32610108	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016252	exon61	c.G12277T	p.E4093X	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32686129	32686129	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016252	exon72	c.G14174A	p.R4725Q	.	.	.
TTC27	55622	broad.mit.edu	36	2	32889640	32889640	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193509	exon17	c.C1894T	p.R632X	.	.	.
LTBP1	4052	broad.mit.edu	36	2	33371793	33371793	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000627	exon16	c.T2197G	p.S733A	.	.	.
LTBP1	4052	broad.mit.edu	36	2	33475852	33475852	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000627	exon29	c.C4005T	p.V1335V	.	.	.
RASGRP3	25780	broad.mit.edu	36	2	33598528	33598528	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170672	exon6	c.G179A	p.R60Q	.	.	.
CRIM1	51232	broad.mit.edu	36	2	36545184	36545184	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016441	exon5	c.C873T	p.C291C	.	.	.
FEZ2	9637	broad.mit.edu	36	2	36661938	36661938	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005102	exon4	c.G633T	p.E211D	.	.	.
VIT	5212	broad.mit.edu	36	2	36886087	36886087	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177969	exon13	c.C1120T	p.R374W	.	.	.
VIT	5212	broad.mit.edu	36	2	36886218	36886218	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177969	exon13	c.G1251A	p.A417A	.	.	.
ALLC	55821	broad.mit.edu	36	2	3705387	3705387	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018436	exon5	c.G226A	p.D76N	.	.	.
ALLC	55821	broad.mit.edu	36	2	3722870	3722870	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018436	exon10	c.G799A	p.A267T	.	.	.
FAM82A1	151393	broad.mit.edu	36	2	38055942	38055942	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170793	exon3	c.G276T	p.K92N	.	.	.
SRSF7	6432	broad.mit.edu	36	2	38828709	38828709	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031684	exon5	c.G556A	p.G186R	.	.	.
MAP4K3	8491	broad.mit.edu	36	2	39370962	39370962	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003618	exon19	c.A1289C	p.K430T	.	.	.
THUMPD2	80745	broad.mit.edu	36	2	39849097	39849097	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025264	exon4	c.A721G	p.K241E	.	.	.
PLEKHH2	130271	broad.mit.edu	36	2	43775131	43775131	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172069	exon5	c.G394T	p.E132X	.	.	.
DYNC2LI1	51626	broad.mit.edu	36	2	43875167	43875167	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193464	exon6	c.C388A	p.L130I	.	.	.
C2orf34	79823	broad.mit.edu	36	2	44847092	44847092	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024766	exon10	c.C782T	p.A261V	.	.	.
PRKCE	5581	broad.mit.edu	36	2	46166966	46166966	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005400	exon11	c.C1553T	p.S518L	.	.	.
ATP6V1E2	90423	broad.mit.edu	36	2	46592714	46592714	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080653	exon2	c.C641T	p.A214V	.	.	.
SOCS5	9655	broad.mit.edu	36	2	46839304	46839304	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144949	exon2	c.A131G	p.N44S	.	.	.
SOCS5	9655	broad.mit.edu	36	2	46840490	46840490	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144949	exon2	c.C1317T	p.F439F	.	.	.
SOCS5	9655	broad.mit.edu	36	2	46840564	46840564	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144949	exon2	c.C1391T	p.S464L	.	.	.
MSH2	4436	broad.mit.edu	36	2	47551684	47551684	+	Nonsense_Mutation	SNP	G	T	T	rs63751411	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000251	exon11	c.G1738T	p.E580X	.	.	.
MSH6	2956	broad.mit.edu	36	2	47876633	47876633	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000179	exon3	c.A554C	p.K185T	.	.	.
MSH6	2956	broad.mit.edu	36	2	47881462	47881462	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000179	exon4	c.G2836T	p.E946X	MSH6,endometrium,NS,Substitution - Nonsense,0	.	.
MSH6	2956	broad.mit.edu	36	2	47884277	47884277	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000179	exon5	c.T3387C	p.C1129C	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48759985	48759985	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006872	exon9	c.G1337A	p.R446Q	.	.	.
FSHR	2492	broad.mit.edu	36	2	49043694	49043694	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181446	exon9	c.C1692A	p.F564L	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50633259	50633259	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135659	exon10	c.C1849A	p.H617N	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50704110	50704110	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135659	exon7	c.C1079T	p.S360L	.	.	.
TSPYL6	388951	broad.mit.edu	36	2	54335795	54335795	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001003937	exon1	c.G998A	p.G333D	.	.	.
SPTBN1	6711	broad.mit.edu	36	2	54712175	54712175	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003128	exon16	c.A3487C	p.N1163H	.	.	.
SPTBN1	6711	broad.mit.edu	36	2	54738520	54738520	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003128	exon30	c.G6076A	p.A2026T	.	.	.
SPTBN1	6711	broad.mit.edu	36	2	54745131	54745131	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003128	exon33	c.G6458A	p.G2153D	.	.	.
MTIF2	4528	broad.mit.edu	36	2	55317963	55317963	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005369	exon16	c.T1976G	p.F659C	.	.	.
VRK2	7444	broad.mit.edu	36	2	58240142	58240142	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130482	exon13	c.G1268A	p.R423K	.	.	.
PUS10	150962	broad.mit.edu	36	2	61028758	61028758	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144709	exon16	c.C1375T	p.R459C	.	.	.
USP34	9736	broad.mit.edu	36	2	61381652	61381652	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014709	exon29	c.T4066G	p.L1356V	.	.	.
USP34	9736	broad.mit.edu	36	2	61399871	61399871	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014709	exon22	c.C3109T	p.R1037X	.	.	.
UGP2	7360	broad.mit.edu	36	2	63966421	63966421	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001521	exon6	c.C737T	p.A246V	.	.	.
MEIS1	4211	broad.mit.edu	36	2	66544826	66544826	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002398	exon7	c.T712C	p.S238P	.	.	.
PLEK	5341	broad.mit.edu	36	2	68476439	68476439	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002664	exon9	c.G1040A	p.R347Q	.	.	.
ARHGAP25	9938	broad.mit.edu	36	2	68856047	68856047	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166276	exon1	c.G231A	p.T77T	.	.	.
GFPT1	2673	broad.mit.edu	36	2	69439099	69439099	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002056	exon6	c.G409A	p.E137K	.	.	.
NFU1	27247	broad.mit.edu	36	2	69500189	69500189	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002755	exon4	c.C354A	p.F118L	.	.	.
ASPRV1	151516	broad.mit.edu	36	2	70041614	70041614	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152792	exon1	c.G711A	p.Q237Q	.	.	.
PCYOX1	51449	broad.mit.edu	36	2	70355714	70355714	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016297	exon4	c.A614C	p.K205T	.	.	.
CLEC4F	165530	broad.mit.edu	36	2	70897581	70897581	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173535	exon4	c.C440T	p.A147V	.	.	.
DYSF	8291	broad.mit.edu	36	2	71648850	71648850	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130982	exon27	c.G2780A	p.G927D	.	.	.
DYSF	8291	broad.mit.edu	36	2	71750377	71750377	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130982	exon51	c.C5756T	p.A1919V	.	.	.
C2orf7	84279	broad.mit.edu	36	2	73309157	73309157	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032319	exon5	c.C500A	p.S167Y	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73530531	73530531	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015120	exon8	c.T3366G	p.I1122M	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73531137	73531137	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015120	exon8	c.G3972T	p.V1324V	.	.	.
SLC4A5	57835	broad.mit.edu	36	2	74305608	74305608	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021196	exon24	c.G3161A	p.R1054Q	.	.	.
HTRA2	27429	broad.mit.edu	36	2	74613537	74613537	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013247	exon8	c.C1294T	p.R432X	.	.	.
C2orf65	130951	broad.mit.edu	36	2	74662412	74662412	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138804	exon5	c.C666A	p.F222L	.	.	.
TACR1	6869	broad.mit.edu	36	2	75201228	75201228	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015727	exon2	c.G564A	p.P188P	.	.	.
TACR1	6869	broad.mit.edu	36	2	75201258	75201258	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015727	exon2	c.C534T	p.V178V	.	.	.
LRRTM4	80059	broad.mit.edu	36	2	77599922	77599922	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024993	exon3	c.G581A	p.R194Q	.	.	.
GGCX	2677	broad.mit.edu	36	2	85634823	85634823	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000821	exon7	c.C843A	p.F281L	.	.	.
USP39	10713	broad.mit.edu	36	2	85721688	85721688	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006590	exon10	c.A1363C	p.K455Q	.	.	.
KIDINS220	57498	broad.mit.edu	36	2	8828255	8828255	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020738	exon22	c.G3007A	p.E1003K	.	.	.
RPIA	22934	broad.mit.edu	36	2	88816359	88816359	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144563	exon6	c.G586A	p.A196T	.	.	.
MBOAT2	129642	broad.mit.edu	36	2	8945611	8945611	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138799	exon5	c.G439A	p.E147K	.	.	.
MRPS5	64969	broad.mit.edu	36	2	95137742	95137742	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031902	exon5	c.G542A	p.R181Q	.	.	.
MRPS5	64969	broad.mit.edu	36	2	95139426	95139426	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031902	exon4	c.A365C	p.K122T	.	.	.
ZNF2	7549	broad.mit.edu	36	2	95211065	95211065	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017396	exon4	c.G639T	p.E213D	.	.	.
ADAM17	6868	broad.mit.edu	36	2	9583743	9583743	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003183	exon6	c.G701A	p.R234H	.	.	.
SNRNP200	23020	broad.mit.edu	36	2	96321239	96321239	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014014	exon17	c.C2287T	p.R763X	.	.	.
NCAPH	23397	broad.mit.edu	36	2	96371248	96371248	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015341	exon2	c.A161C	p.D54A	.	.	.
FER1L5	90342	broad.mit.edu	36	2	96729822	96729822	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113382	exon44	c.T5038G	p.L1680V	.	.	.
VWA3B	200403	broad.mit.edu	36	2	98116726	98116726	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144992	exon7	c.G880A	p.A294T	.	.	.
VWA3B	200403	broad.mit.edu	36	2	98273444	98273444	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144992	exon23	c.A3084C	p.K1028N	.	.	.
LYG2	254773	broad.mit.edu	36	2	99225310	99225310	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175735	exon6	c.C588T	p.F196F	.	.	.
REV1	51455	broad.mit.edu	36	2	99395686	99395686	+	Missense_Mutation	SNP	C	T	T	rs28382942	by-frequency	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016316	exon13	c.G2111A	p.R704Q	.	.	.
REV1	51455	broad.mit.edu	36	2	99412814	99412814	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016316	exon9	c.G1467A	p.E489E	.	.	.
AFF3	3899	broad.mit.edu	36	2	99989644	99989644	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025108	exon6	c.A830C	p.K277T	.	.	.
CCDC108	255101	broad.mit.edu	36	2	219586977	219586977	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194302	exon22	c.3636delC	p.D1212fs	.	.	.
GABBR2	9568	broad.mit.edu	36	9	100113225	100113225	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005458	exon14	c.C1977T	p.I659I	.	.	.
GALNT12	79695	broad.mit.edu	36	9	100637455	100637455	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024642	exon5	c.G1021A	p.E341K	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100871836	100871836	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001855	exon42	c.C4014A	p.Y1338X	.	.	.
TGFBR1	7046	broad.mit.edu	36	9	100930997	100930997	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004612	exon2	c.T137G	p.F46C	.	.	.
TGFBR1	7046	broad.mit.edu	36	9	100940109	100940109	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004612	exon4	c.C722T	p.S241L	.	.	.
ALG2	85365	broad.mit.edu	36	9	101020383	101020383	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033087	exon2	c.C905A	p.S302Y	.	.	.
TEX10	54881	broad.mit.edu	36	9	102148924	102148924	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017746	exon3	c.G766T	p.E256X	.	.	.
TMEFF1	8577	broad.mit.edu	36	9	102374625	102374625	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003692	exon9	c.G904A	p.E302K	.	.	.
MURC	347273	broad.mit.edu	36	9	102380636	102380636	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018116	exon1	c.C390A	p.F130L	.	.	.
MURC	347273	broad.mit.edu	36	9	102388013	102388013	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018116	exon2	c.C554T	p.A185V	.	.	.
MURC	347273	broad.mit.edu	36	9	102388056	102388056	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018116	exon2	c.G597T	p.K199N	.	.	.
PPP3R2	5535	broad.mit.edu	36	9	103396625	103396625	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147180	exon1	c.G409A	p.D137N	.	.	.
CYLC2	1539	broad.mit.edu	36	9	104797488	104797488	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001340	exon1	c.C5T	p.S2F	.	.	.
CYLC2	1539	broad.mit.edu	36	9	104806828	104806828	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001340	exon4	c.C211T	p.R71C	.	.	.
OR13D1	286365	broad.mit.edu	36	9	106497103	106497103	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004484	exon1	c.C580A	p.L194M	.	.	.
ABCA1	19	broad.mit.edu	36	9	106627856	106627856	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005502	exon17	c.C2471T	p.S824L	.	.	.
ABCA1	19	broad.mit.edu	36	9	106627988	106627988	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005502	exon17	c.G2339A	p.S780N	.	.	.
TMEM38B	55151	broad.mit.edu	36	9	107576171	107576171	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018112	exon6	c.A865C	p.K289Q	.	.	.
EPB41L4B	54566	broad.mit.edu	36	9	110976663	110976663	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019114	exon26	c.G2695A	p.E899K	.	.	.
EPB41L4B	54566	broad.mit.edu	36	9	111058560	111058560	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018424	exon8	c.G774A	p.A258A	.	.	.
PTPN3	5774	broad.mit.edu	36	9	111229153	111229153	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002829	exon12	c.C899T	p.S300F	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112209155	112209155	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153366	exon38	c.A8546G	p.Y2849C	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112232477	112232477	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153366	exon33	c.G5428A	p.E1810K	.	.	.
MUSK	4593	broad.mit.edu	36	9	112570162	112570162	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005592	exon8	c.C1162T	p.P388S	.	.	.
KIAA0368	23392	broad.mit.edu	36	9	113230225	113230225	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080398	exon11	c.T1502C	p.V501A	.	.	.
SNX30	401548	broad.mit.edu	36	9	114619845	114619845	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012994	exon3	c.C388T	p.R130C	.	.	.
SLC46A2	57864	broad.mit.edu	36	9	114691662	114691663	+	Missense_Mutation	DNP	AA	GG	GG	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033051	exon1	c.1120_1121CC	.	.	.	.
ZNF883	169834	broad.mit.edu	36	9	114800179	114800179	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001101338	exon5	c.G182T	p.R61I	.	.	.
FKBP15	23307	broad.mit.edu	36	9	114986403	114986403	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015258	exon17	c.G1706A	p.R569Q	.	.	.
PRPF4	9128	broad.mit.edu	36	9	115088925	115088925	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004697	exon9	c.G931A	p.D311N	.	.	.
AMBP	259	broad.mit.edu	36	9	115863533	115863533	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001633	exon8	c.G845A	p.R282Q	.	.	.
COL27A1	85301	broad.mit.edu	36	9	115996557	115996557	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032888	exon6	c.A2069C	p.K690T	.	.	.
COL27A1	85301	broad.mit.edu	36	9	116047988	116047988	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032888	exon24	c.C2956T	p.R986W	.	.	.
ORM1	5004	broad.mit.edu	36	9	116125898	116125898	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000607	exon2	c.C249T	p.Y83Y	.	.	.
ORM1	5004	broad.mit.edu	36	9	116126910	116126910	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000607	exon4	c.C348T	p.F116F	.	.	.
TNC	3371	broad.mit.edu	36	9	116838283	116838283	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002160	exon21	c.C5571T	p.L1857L	.	.	.
TNC	3371	broad.mit.edu	36	9	116889242	116889242	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002160	exon3	c.C589T	p.R197X	.	.	.
PAPPA	5069	broad.mit.edu	36	9	118149195	118149195	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002581	exon15	c.G3850A	p.D1284N	.	.	.
ASTN2	23245	broad.mit.edu	36	9	118607794	118607794	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014010	exon12	c.A2181G	p.L727L	.	.	.
CDK5RAP2	55755	broad.mit.edu	36	9	122217228	122217228	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018249	exon28	c.G4208A	p.R1403Q	.	.	.
CDK5RAP2	55755	broad.mit.edu	36	9	122221924	122221924	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018249	exon27	c.A4140C	p.T1380T	.	.	.
C5	727	broad.mit.edu	36	9	122754866	122754866	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001735	exon41	c.C5003T	p.A1668V	.	.	.
C5	727	broad.mit.edu	36	9	122764842	122764842	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001735	exon36	c.C4432T	p.R1478W	.	.	.
C5	727	broad.mit.edu	36	9	122823681	122823681	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001735	exon11	c.T1229C	p.V410A	.	.	.
C5	727	broad.mit.edu	36	9	122840032	122840032	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001735	exon4	c.C440T	p.S147L	.	.	.
CEP110	11064	broad.mit.edu	36	9	122954755	122954755	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007018	exon24	c.G4135T	p.E1379X	.	.	.
MRRF	92399	broad.mit.edu	36	9	124087347	124087347	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138777	exon4	c.C419T	p.S140L	.	.	.
OR1J1	347168	broad.mit.edu	36	9	124279115	124279115	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004451	exon1	c.C912A	p.L304L	.	.	.
OR1N2	138882	broad.mit.edu	36	9	124356258	124356258	+	Nonsense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004457	exon1	c.T989G	p.L330X	.	.	.
OR5C1	392391	broad.mit.edu	36	9	124591367	124591367	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001923	exon1	c.C335T	p.A112V	.	.	.
RABGAP1	23637	broad.mit.edu	36	9	124901647	124901647	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012197	exon24	c.C2887T	p.R963W	.	.	.
STRBP	55342	broad.mit.edu	36	9	124934973	124934973	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171137	exon17	c.G1827A	p.A609A	.	.	.
STRBP	55342	broad.mit.edu	36	9	124963150	124963150	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171137	exon7	c.A512C	p.D171A	.	.	.
GOLGA1	2800	broad.mit.edu	36	9	126683987	126683987	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002077	exon21	c.C2033T	p.A678V	.	.	.
TYRP1	7306	broad.mit.edu	36	9	12694611	12694611	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000550	exon6	c.A1167G	p.G389G	.	.	.
HSPA5	3309	broad.mit.edu	36	9	127039230	127039230	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005347	exon8	c.A1427C	p.N476T	.	.	.
ANGPTL2	23452	broad.mit.edu	36	9	128910642	128910642	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012098	exon2	c.C190T	p.R64W	.	.	.
GARNL3	84253	broad.mit.edu	36	9	129138314	129138314	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032293	exon11	c.C960T	p.S320S	.	.	.
LRSAM1	90678	broad.mit.edu	36	9	129257694	129257694	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005373	exon5	c.G148T	p.A50S	.	.	.
STXBP1	6812	broad.mit.edu	36	9	129472020	129472020	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003165	exon11	c.G925T	p.D309Y	.	.	.
MPDZ	8777	broad.mit.edu	36	9	13103022	13103022	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003829	exon40	c.C5502T	p.V1834V	.	.	.
FNBP1	23048	broad.mit.edu	36	9	131729439	131729439	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015033	exon8	c.A645C	p.K215N	.	.	.
ABL1	25	broad.mit.edu	36	9	132719390	132719390	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005157	exon2	c.C198T	p.F66F	.	.	.
POMT1	10585	broad.mit.edu	36	9	133386585	133386585	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007171	exon18	c.T1796C	p.I599T	.	.	.
RAPGEF1	2889	broad.mit.edu	36	9	133491138	133491138	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198679	exon10	c.A1697G	p.N566S	.	.	.
NTNG2	84628	broad.mit.edu	36	9	134104316	134104316	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032536	exon6	c.C1059T	p.C353C	.	.	.
SETX	23064	broad.mit.edu	36	9	134196488	134196488	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015046	exon8	c.T1007C	p.V336A	.	.	.
GTF3C4	9329	broad.mit.edu	36	9	134543226	134543226	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012204	exon2	c.C399T	p.F133F	.	.	.
TSC1	7248	broad.mit.edu	36	9	134790943	134790943	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001162426	exon5	c.T215G	p.L72R	.	.	.
C9orf7	11094	broad.mit.edu	36	9	135320276	135320276	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017586	exon3	c.T206C	p.F69S	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136763794	136763794	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000093	exon9	c.G1389A	p.P463P	.	.	.
SEC16A	9919	broad.mit.edu	36	9	138489339	138489339	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014866	exon3	c.G2550A	p.S850S	.	.	.
CACNA1B	774	broad.mit.edu	36	9	140021090	140021090	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000718	exon16	c.G2025A	p.S675S	.	.	.
CACNA1B	774	broad.mit.edu	36	9	140068211	140068211	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000718	exon26	c.G3900A	p.A1300A	.	.	.
CACNA1B	774	broad.mit.edu	36	9	140116994	140116994	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000718	exon37	c.A5233C	p.S1745R	.	.	.
NFIB	4781	broad.mit.edu	36	9	14297434	14297434	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190738	exon2	c.G194A	p.R65H	.	.	.
CER1	9350	broad.mit.edu	36	9	14712278	14712278	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005454	exon1	c.G393T	p.K131N	.	.	.
TTC39B	158219	broad.mit.edu	36	9	15204181	15204181	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168340	exon4	c.T438C	p.F146F	.	.	.
TTC39B	158219	broad.mit.edu	36	9	15257938	15257938	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168340	exon2	c.C249T	p.F83F	.	.	.
C9orf93	203238	broad.mit.edu	36	9	15836804	15836804	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173550	exon22	c.G3372A	p.E1124E	.	.	.
BNC2	54796	broad.mit.edu	36	9	16425954	16425954	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017637	exon6	c.C2238T	p.S746S	.	.	.
BNC2	54796	broad.mit.edu	36	9	16426658	16426658	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017637	exon6	c.C1534T	p.R512W	.	.	.
PLIN2	123	broad.mit.edu	36	9	19106547	19106547	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122	exon8	c.A1013C	p.N338T	.	.	.
DENND4C	55667	broad.mit.edu	36	9	19336864	19336864	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017925	exon18	c.G3242A	p.R1081Q	.	.	.
KIAA1797	54914	broad.mit.edu	36	9	20730309	20730309	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017794	exon7	c.A362C	p.E121A	.	.	.
KIAA1797	54914	broad.mit.edu	36	9	20985592	20985592	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017794	exon46	c.G5370A	p.K1790K	.	.	.
SMARCA2	6595	broad.mit.edu	36	9	2105855	2105855	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139045	exon25	c.G3490A	p.G1164R	.	.	.
IFNA16	3449	broad.mit.edu	36	9	21207004	21207004	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002173	exon1	c.G301A	p.D101N	.	.	.
KLHL9	55958	broad.mit.edu	36	9	21324137	21324137	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018847	exon1	c.G722A	p.R241Q	.	.	.
IFNA13	3447	broad.mit.edu	36	9	21357676	21357676	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006900	exon1	c.G334A	p.E112K	.	.	.
IFNA13	3447	broad.mit.edu	36	9	21357955	21357955	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006900	exon1	c.T55C	p.S19P	.	.	.
IFNA2	3440	broad.mit.edu	36	9	21375050	21375050	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000605	exon1	c.G279T	p.K93N	.	.	.
IFNA1	3439	broad.mit.edu	36	9	21430837	21430837	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024013	exon1	c.G331A	p.E111K	.	.	.
SMARCA2	6595	broad.mit.edu	36	9	2171578	2171578	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139045	exon29	c.C4207T	p.R1403X	.	.	.
VLDLR	7436	broad.mit.edu	36	9	2641891	2641891	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018056	exon16	c.G2269A	p.A757T	.	.	.
IFT74	80173	broad.mit.edu	36	9	27046348	27046348	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099222	exon18	c.G1514A	p.R505K	.	.	.
TEK	7010	broad.mit.edu	36	9	27147925	27147925	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000459	exon2	c.G149A	p.R50H	.	.	.
TEK	7010	broad.mit.edu	36	9	27148095	27148095	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000459	exon2	c.C319T	p.R107X	.	.	.
C9orf11	54586	broad.mit.edu	36	9	27286684	27286684	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161585	exon2	c.G129T	p.K43N	.	.	.
LINGO2	158038	broad.mit.edu	36	9	27939623	27939623	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152570	exon7	c.C1047T	p.V349V	.	.	.
LINGO2	158038	broad.mit.edu	36	9	27940328	27940328	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152570	exon7	c.C342T	p.G114G	.	.	.
KIAA0020	9933	broad.mit.edu	36	9	2821284	2821284	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014878	exon6	c.G577A	p.E193K	.	.	.
ACO1	48	broad.mit.edu	36	9	32408190	32408190	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002197	exon5	c.T469G	p.L157V	.	.	.
ACO1	48	broad.mit.edu	36	9	32413350	32413350	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002197	exon9	c.A1004C	p.K335T	.	.	.
TOPORS	10210	broad.mit.edu	36	9	32532463	32532463	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195622	exon2	c.G1865T	p.R622I	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32622302	32622302	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153809	exon1	c.G3276T	p.Q1092H	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32623044	32623044	+	Missense_Mutation	SNP	C	T	T	rs34787787	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153809	exon1	c.G2534A	p.R845Q	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32623390	32623390	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153809	exon1	c.G2188T	p.D730Y	.	.	.
NFX1	4799	broad.mit.edu	36	9	33342713	33342713	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002504	exon17	c.C2725T	p.Q909X	.	.	.
UBAP2	55833	broad.mit.edu	36	9	33923619	33923619	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018449	exon18	c.G1977T	p.K659N	.	.	.
GALT	2592	broad.mit.edu	36	9	34640384	34640384	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000155	exon11	c.G1078A	p.A360T	.	.	.
KIAA1045	23349	broad.mit.edu	36	9	34961592	34961592	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015297	exon2	c.C297A	p.F99L	.	.	.
C9orf131	138724	broad.mit.edu	36	9	35033726	35033726	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040411	exon2	c.A881G	p.D294G	.	.	.
PIGO	84720	broad.mit.edu	36	9	35082618	35082618	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032634	exon7	c.G1266A	p.P422P	.	.	.
STOML2	30968	broad.mit.edu	36	9	35090957	35090957	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013442	exon8	c.G776A	p.R259Q	.	.	.
UNC13B	10497	broad.mit.edu	36	9	35285718	35285718	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006377	exon8	c.C552T	p.V184V	.	.	.
TESK1	7016	broad.mit.edu	36	9	35597377	35597377	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006285	exon5	c.C591T	p.F197F	.	.	.
CD72	971	broad.mit.edu	36	9	35602862	35602862	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001782	exon6	c.G817T	p.E273X	.	.	.
SPAG8	26206	broad.mit.edu	36	9	35800657	35800657	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172312	exon4	c.G1062T	p.E354D	.	.	.
SPAG8	26206	broad.mit.edu	36	9	35801028	35801028	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172312	exon3	c.C891T	p.V297V	.	.	.
TMEM8B	51754	broad.mit.edu	36	9	35832452	35832452	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016446	exon7	c.C17A	p.S6Y	.	.	.
MELK	9833	broad.mit.edu	36	9	36659327	36659327	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014791	exon15	c.G1429T	p.E477X	.	.	.
ZNF658	26149	broad.mit.edu	36	9	40763362	40763362	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033160	exon5	c.C1913A	p.S638Y	.	.	.
JAK2	3717	broad.mit.edu	36	9	5044592	5044592	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004972	exon7	c.G644A	p.R215Q	.	.	.
INSL6	11172	broad.mit.edu	36	9	5154126	5154126	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007179	exon2	c.G429T	p.E143D	.	.	.
KIAA2026	158358	broad.mit.edu	36	9	5909959	5909959	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017969	exon8	c.C6037A	p.L2013I	.	.	.
RANBP6	26953	broad.mit.edu	36	9	6004743	6004743	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012416	exon1	c.G865A	p.E289K	.	.	.
UHRF2	115426	broad.mit.edu	36	9	6450659	6450659	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152896	exon4	c.T731C	p.V244A	.	.	.
GLDC	2731	broad.mit.edu	36	9	6577268	6577268	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000170	exon15	c.G1723T	p.E575X	.	.	.
PIP5K1B	8395	broad.mit.edu	36	9	70699309	70699309	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003558	exon8	c.G706A	p.E236K	.	.	.
TRPM3	80036	broad.mit.edu	36	9	72403305	72403305	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007471	exon20	c.C2862T	p.V954V	.	.	.
KANK1	23189	broad.mit.edu	36	9	730881	730881	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153186	exon8	c.C3169T	p.R1057W	.	.	.
KANK1	23189	broad.mit.edu	36	9	732230	732230	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153186	exon9	c.C3248T	p.A1083V	.	.	.
TMEM2	23670	broad.mit.edu	36	9	73550004	73550004	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013390	exon4	c.G784A	p.D262N	.	.	.
RORB	6096	broad.mit.edu	36	9	76439411	76439411	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006914	exon3	c.C138G	p.C46W	.	.	.
RORB	6096	broad.mit.edu	36	9	76472603	76472603	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006914	exon8	c.C1077T	p.I359I	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76544169	76544169	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177310	exon35	c.G5489T	p.R1830I	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76567685	76567685	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177310	exon26	c.G3707T	p.R1236I	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76601556	76601556	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177310	exon18	c.T2297C	p.V766A	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76606814	76606814	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177310	exon16	c.A1814G	p.D605G	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76625156	76625156	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177310	exon9	c.C1003T	p.R335X	.	.	.
PCSK5	5125	broad.mit.edu	36	9	77900838	77900838	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190482	exon8	c.C1107T	p.I369I	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78651306	78651306	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015225	exon4	c.G453A	p.E151E	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79042754	79042754	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018037	exon18	c.G1612T	p.D538Y	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79100459	79100459	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018037	exon32	c.T3572C	p.F1191S	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79165351	79165351	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018037	exon58	c.G8068A	p.E2690K	.	.	.
CEP78	84131	broad.mit.edu	36	9	80056708	80056708	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098802	exon9	c.G1137A	p.A379A	.	.	.
CEP78	84131	broad.mit.edu	36	9	80071403	80071403	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098802	exon16	c.A2074G	p.N692D	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8331948	8331948	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040712	exon24	c.C3462T	p.I1154I	.	.	.
FAM75D1	389763	broad.mit.edu	36	9	83795717	83795717	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001670	exon4	c.C512T	p.T171I	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8474264	8474264	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040712	exon13	c.A2026C	p.N676H	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8474375	8474375	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040712	exon13	c.C1915A	p.L639I	.	.	.
HNRNPK	3190	broad.mit.edu	36	9	85776879	85776879	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002140	exon11	c.G691A	p.D231N	.	.	.
NTRK2	4915	broad.mit.edu	36	9	86826012	86826012	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006180	exon21	c.G2357A	p.R786Q	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89452084	89452084	+	Silent	SNP	C	T	T	rs55637131	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004938	exon14	c.C1275T	p.V425V	.	.	.
CTSL1	1514	broad.mit.edu	36	9	89535796	89535796	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145918	exon8	c.G956T	p.R319I	.	.	.
LOC286238	286238	broad.mit.edu	36	9	90452171	90452171	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100111	exon2	c.C292A	p.L98I	.	.	.
S1PR3	1903	broad.mit.edu	36	9	90806292	90806292	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005226	exon2	c.C357T	p.F119F	.	.	.
NFIL3	4783	broad.mit.edu	36	9	93212014	93212014	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005384	exon2	c.C824T	p.S275L	.	.	.
ROR2	4920	broad.mit.edu	36	9	93526583	93526583	+	Missense_Mutation	SNP	C	T	T	rs55651110	unknown	TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004560	exon9	c.G2014A	p.D672N	.	.	.
ECM2	1842	broad.mit.edu	36	9	94298430	94298430	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001393	exon10	c.A2088C	p.Q696H	.	.	.
BICD2	23299	broad.mit.edu	36	9	94521217	94521217	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015250	exon5	c.G1531A	p.D511N	.	.	.
BICD2	23299	broad.mit.edu	36	9	94524880	94524880	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015250	exon3	c.G485A	p.R162H	.	.	.
ZNF484	83744	broad.mit.edu	36	9	94649847	94649847	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007101	exon4	c.G935T	p.R312I	.	.	.
ZNF484	83744	broad.mit.edu	36	9	94650478	94650478	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007101	exon4	c.C304T	p.R102C	.	.	.
PHF2	5253	broad.mit.edu	36	9	95465702	95465702	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005392	exon14	c.A1901C	p.K634T	.	.	.
FAM22F	54754	broad.mit.edu	36	9	96124361	96124361	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017561	exon3	c.G785A	p.R262Q	.	.	.
FBP2	8789	broad.mit.edu	36	9	96389437	96389437	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003837	exon2	c.C306T	p.D102D	.	.	.
C9orf3	84909	broad.mit.edu	36	9	96884756	96884756	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032823	exon14	c.G2101A	p.E701K	.	.	.
FANCC	2176	broad.mit.edu	36	9	96903921	96903921	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000136	exon15	c.C1566A	p.I522I	.	.	.
PTCH1	5727	broad.mit.edu	36	9	97271142	97271142	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001083605	exon14	c.G1509A	p.T503T	.	.	.
SLC35D2	11046	broad.mit.edu	36	9	98123427	98123427	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007001	exon12	c.G932T	p.R311I	.	.	.
ZNF367	195828	broad.mit.edu	36	9	98196955	98196955	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153695	exon3	c.G662A	p.G221E	.	.	.
CTSL2	1515	broad.mit.edu	36	9	98836945	98836945	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001333	exon7	c.C789T	p.G263G	.	.	.
TDRD7	23424	broad.mit.edu	36	9	99233093	99233093	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014290	exon3	c.C265T	p.R89C	.	.	.
TMOD1	7111	broad.mit.edu	36	9	99348345	99348345	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166116	exon3	c.G178A	p.G60S	.	.	.
XPA	7507	broad.mit.edu	36	9	99495785	99495785	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000380	exon2	c.G250T	p.E84X	.	.	.
TPP2	7174	broad.mit.edu	36	13	102066778	102066778	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003291	exon4	c.T422C	p.V141A	.	.	.
ERCC5	2073	broad.mit.edu	36	13	102289975	102289975	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159596	exon9	c.G605T	p.R202I	.	.	.
ERCC5	2073	broad.mit.edu	36	13	102302591	102302591	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000123	exon2	c.C211T	p.R71C	.	.	.
ERCC5	2073	broad.mit.edu	36	13	102308725	102308725	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000123	exon6	c.G628T	p.E210X	.	.	.
SLC10A2	6555	broad.mit.edu	36	13	102516558	102516558	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000452	exon1	c.T43G	p.S15A	.	.	.
MYO16	23026	broad.mit.edu	36	13	108551198	108551198	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198950	exon28	c.C3400T	p.R1134X	.	.	.
COL4A1	1282	broad.mit.edu	36	13	109662825	109662825	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001845	exon6	c.A327C	p.G109G	.	.	.
F10	2159	broad.mit.edu	36	13	112831803	112831803	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000504	exon2	c.C107T	p.A36V	.	.	.
CDC16	8881	broad.mit.edu	36	13	114048784	114048784	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001078645	exon17	c.G1570A	p.E524K	.	.	.
CDC16	8881	broad.mit.edu	36	13	114055842	114055842	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001078645	exon18	c.C1685T	p.P562L	.	.	.
TUBA3C	7278	broad.mit.edu	36	13	18649107	18649107	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006001	exon4	c.G1016A	p.R339H	.	.	.
TPTE2	93492	broad.mit.edu	36	13	18923334	18923334	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001141968	exon10	c.G440A	p.R147Q	.	.	.
MPHOSPH8	54737	broad.mit.edu	36	13	19118824	19118824	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017520	exon3	c.C611A	p.S204Y	.	.	.
ZMYM5	9205	broad.mit.edu	36	13	19323925	19323925	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039650	exon3	c.G396T	p.E132D	.	.	.
CRYL1	51084	broad.mit.edu	36	13	19876300	19876300	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015974	exon8	c.G928A	p.A310T	.	.	.
N6AMT2	221143	broad.mit.edu	36	13	20229600	20229600	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174928	exon2	c.G138T	p.E46D	.	.	.
LATS2	26524	broad.mit.edu	36	13	20455817	20455817	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014572	exon5	c.C2028T	p.I676I	.	.	.
FGF9	2254	broad.mit.edu	36	13	21153225	21153225	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002010	exon2	c.C322T	p.R108X	.	.	.
SGCG	6445	broad.mit.edu	36	13	22675933	22675933	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000231	exon2	c.C100T	p.R34C	.	.	.
SACS	26278	broad.mit.edu	36	13	22802858	22802858	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014363	exon10	c.G13157A	p.R4386Q	.	.	.
SACS	26278	broad.mit.edu	36	13	22806186	22806186	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014363	exon10	c.G9829T	p.D3277Y	.	.	.
SACS	26278	broad.mit.edu	36	13	22811577	22811577	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014363	exon10	c.G4438T	p.E1480X	.	.	.
SACS	26278	broad.mit.edu	36	13	22827713	22827713	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014363	exon8	c.G1038A	p.P346P	.	.	.
SACS	26278	broad.mit.edu	36	13	22827924	22827924	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014363	exon8	c.G827A	p.R276H	.	.	.
TNFRSF19	55504	broad.mit.edu	36	13	23088124	23088124	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148957	exon4	c.G299A	p.R100H	.	.	.
C1QTNF9B	387911	broad.mit.edu	36	13	23363742	23363742	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007537	exon3	c.G688A	p.E230K	.	.	.
SPATA13	221178	broad.mit.edu	36	13	23761310	23761310	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166271	exon8	c.T2841C	p.L947L	.	.	.
ATP12A	479	broad.mit.edu	36	13	24179162	24179162	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001185085	exon16	c.A2189G	p.D730G	.	.	.
RNF17	56163	broad.mit.edu	36	13	24265200	24265200	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184993	exon10	c.A956T	p.E319V	.	.	.
CENPJ	55835	broad.mit.edu	36	13	24356188	24356188	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018451	exon16	c.C3737T	p.T1246M	.	.	.
CENPJ	55835	broad.mit.edu	36	13	24361526	24361526	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018451	exon11	c.C3229T	p.R1077X	.	.	.
PABPC3	5042	broad.mit.edu	36	13	24568420	24568420	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030979	exon1	c.C84T	p.Y28Y	.	.	.
PABPC3	5042	broad.mit.edu	36	13	24569874	24569874	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030979	exon1	c.G1538A	p.R513H	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25054085	25054085	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016529	exon23	c.G2136A	p.A712A	.	.	.
RNF6	6049	broad.mit.edu	36	13	25687577	25687577	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005977	exon5	c.C442T	p.R148W	.	.	.
WASF3	10810	broad.mit.edu	36	13	26157937	26157937	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006646	exon10	c.C1464A	p.D488E	.	.	.
LNX2	222484	broad.mit.edu	36	13	27025441	27025441	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153371	exon8	c.C1682T	p.A561V	.	.	.
FLT1	2321	broad.mit.edu	36	13	27775366	27775366	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002019	exon30	c.G3955A	p.A1319T	.	.	.
FLT1	2321	broad.mit.edu	36	13	27793610	27793610	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002019	exon23	c.G3164A	p.R1055K	.	.	.
FLT1	2321	broad.mit.edu	36	13	27939736	27939736	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002019	exon2	c.A83C	p.K28T	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28960051	28960051	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033602	exon9	c.C3444T	p.T1148T	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28964842	28964842	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033602	exon10	c.C3595T	p.R1199W	.	.	.
KATNAL1	84056	broad.mit.edu	36	13	29702689	29702689	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032116	exon8	c.G928T	p.D310Y	.	.	.
USPL1	10208	broad.mit.edu	36	13	30129902	30129902	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005800	exon9	c.A1688G	p.D563G	.	.	.
FRY	10129	broad.mit.edu	36	13	31647726	31647726	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023037	exon20	c.C2378A	p.S793Y	.	.	.
FRY	10129	broad.mit.edu	36	13	31737599	31737599	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023037	exon54	c.C7792T	p.R2598C	.	.	.
BRCA2	675	broad.mit.edu	36	13	31804611	31804611	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000059	exon10	c.T996G	p.I332M	.	.	.
BRCA2	675	broad.mit.edu	36	13	31812965	31812965	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000059	exon11	c.T6473G	p.F2158C	.	.	.
BRCA2	675	broad.mit.edu	36	13	31852279	31852279	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000059	exon24	c.A9253G	p.T3085A	.	.	.
BRCA2	675	broad.mit.edu	36	13	31870706	31870706	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000059	exon27	c.T10056G	p.L3352L	.	.	.
PDS5B	23047	broad.mit.edu	36	13	32247185	32247185	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015032	exon35	c.C4339T	p.R1447X	.	.	.
NBEA	26960	broad.mit.edu	36	13	34590599	34590599	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015678	exon16	c.G2231T	p.R744I	.	.	.
NBEA	26960	broad.mit.edu	36	13	34631188	34631188	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015678	exon22	c.A2880C	p.K960N	.	.	.
NBEA	26960	broad.mit.edu	36	13	35022683	35022683	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015678	exon42	c.C6655T	p.R2219C	.	.	.
NBEA	26960	broad.mit.edu	36	13	35139564	35139564	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015678	exon56	c.G8455T	p.G2819X	.	.	.
DCLK1	9201	broad.mit.edu	36	13	35300442	35300442	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195416	exon5	c.C311T	p.S104L	.	.	.
SOHLH2	54937	broad.mit.edu	36	13	35674117	35674117	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017826	exon2	c.G162T	p.K54N	.	.	.
SPG20	23111	broad.mit.edu	36	13	35807193	35807193	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142295	exon2	c.G775A	p.D259N	.	.	.
SPG20	23111	broad.mit.edu	36	13	35807276	35807276	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142295	exon2	c.T692G	p.F231C	.	.	.
FAM48A	55578	broad.mit.edu	36	13	36512587	36512587	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017569	exon9	c.T525G	p.I175M	.	.	.
POSTN	10631	broad.mit.edu	36	13	37052719	37052719	+	Nonsense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135934	exon11	c.T1508G	p.L503X	.	.	.
POSTN	10631	broad.mit.edu	36	13	37060027	37060027	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135934	exon5	c.A538C	p.K180Q	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37109382	37109382	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016179	exon11	c.C2592A	p.I864I	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37135742	37135742	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135957	exon6	c.C1499A	p.S500Y	.	.	.
FREM2	341640	broad.mit.edu	36	13	38163333	38163333	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207361	exon1	c.G3852A	p.G1284G	FREM2,central_nervous_system,brain,Substitution - coding silent,0	.	.
COG6	57511	broad.mit.edu	36	13	39159654	39159654	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145079	exon9	c.A803C	p.E268A	.	.	.
FOXO1	2308	broad.mit.edu	36	13	40032523	40032523	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002015	exon2	c.G1105A	p.E369K	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41163546	41163546	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015058	exon32	c.G3776A	p.R1259Q	.	.	.
TNFSF11	8600	broad.mit.edu	36	13	42073020	42073020	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003701	exon4	c.G435A	p.A145A	.	.	.
TNFSF11	8600	broad.mit.edu	36	13	42078898	42078898	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003701	exon5	c.G798A	p.G266G	.	.	.
ENOX1	55068	broad.mit.edu	36	13	42828243	42828243	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127615	exon8	c.G635A	p.G212D	.	.	.
KCTD4	386618	broad.mit.edu	36	13	44666422	44666422	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198404	exon2	c.G281A	p.R94Q	.	.	.
SPERT	220082	broad.mit.edu	36	13	45185374	45185374	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152719	exon3	c.C213T	p.C71C	.	.	.
ZC3H13	23091	broad.mit.edu	36	13	45439940	45439940	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015070	exon15	c.C4021T	p.R1341X	.	.	.
LCP1	3936	broad.mit.edu	36	13	45626972	45626972	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002298	exon6	c.A542G	p.N181S	.	.	.
LCP1	3936	broad.mit.edu	36	13	45631737	45631737	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002298	exon2	c.T62C	p.V21A	.	.	.
C13orf18	80183	broad.mit.edu	36	13	45817625	45817625	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025113	exon13	c.G1743T	p.K581N	.	.	.
HTR2A	3356	broad.mit.edu	36	13	46307550	46307550	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165947	exon3	c.C587A	p.S196Y	.	.	.
LPAR6	10161	broad.mit.edu	36	13	47884287	47884287	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005767	exon7	c.T274C	p.S92P	.	.	.
FNDC3A	22862	broad.mit.edu	36	13	48675347	48675347	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079673	exon25	c.T3208G	p.L1070V	.	.	.
PHF11	51131	broad.mit.edu	36	13	48978834	48978834	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040443	exon2	c.G157A	p.E53K	.	.	.
KCNRG	283518	broad.mit.edu	36	13	49492590	49492590	+	Read-through	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173605	exon2	c.G818T	p.X273L	.	.	.
FAM124A	220108	broad.mit.edu	36	13	50724164	50724164	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145019	exon4	c.C768A	p.F256L	.	.	.
INTS6	26512	broad.mit.edu	36	13	50848265	50848265	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012141	exon13	c.G1649A	p.R550Q	.	.	.
INTS6	26512	broad.mit.edu	36	13	50859533	50859533	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012141	exon7	c.C884T	p.S295L	.	.	.
NEK5	341676	broad.mit.edu	36	13	51537689	51537689	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199289	exon22	c.C1982T	p.A661V	.	.	.
NEK5	341676	broad.mit.edu	36	13	51537736	51537736	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199289	exon22	c.G1935A	p.T645T	.	.	.
NEK5	341676	broad.mit.edu	36	13	51559489	51559489	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199289	exon15	c.G1378A	p.E460K	.	.	.
NEK3	4752	broad.mit.edu	36	13	51613170	51613170	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152720	exon11	c.A914G	p.E305G	.	.	.
CKAP2	26586	broad.mit.edu	36	13	51933216	51933216	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098525	exon4	c.G257A	p.R86K	.	.	.
CKAP2	26586	broad.mit.edu	36	13	51945984	51945984	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098525	exon8	c.T1569G	p.S523S	.	.	.
LECT1	11061	broad.mit.edu	36	13	52180707	52180707	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011705	exon6	c.G754A	p.D252N	.	.	.
OLFM4	10562	broad.mit.edu	36	13	52522720	52522720	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006418	exon5	c.G1346A	p.R449K	.	.	.
PCDH20	64881	broad.mit.edu	36	13	60884738	60884738	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022843	exon2	c.C1495T	p.L499L	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66375652	66375652	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203487	exon3	c.A3123C	p.E1041D	.	.	.
UCHL3	7347	broad.mit.edu	36	13	75077902	75077902	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006002	exon9	c.G646A	p.D216N	.	.	.
LMO7	4008	broad.mit.edu	36	13	75280090	75280090	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015842	exon7	c.T971G	p.F324C	.	.	.
LMO7	4008	broad.mit.edu	36	13	75291555	75291555	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015842	exon10	c.G1391A	p.R464Q	.	.	.
FBXL3	26224	broad.mit.edu	36	13	76479801	76479801	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012158	exon5	c.G767A	p.R256H	.	.	.
MYCBP2	23077	broad.mit.edu	36	13	76540940	76540940	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015057	exon70	c.C11932T	p.R3978C	.	.	.
MYCBP2	23077	broad.mit.edu	36	13	76760353	76760353	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015057	exon3	c.G538A	p.E180K	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77390701	77390701	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122659	exon1	c.G9A	p.P3P	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83353410	83353410	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052910	exon1	c.C234T	p.F78F	.	.	.
SLITRK6	84189	broad.mit.edu	36	13	85266621	85266621	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032229	exon2	c.C2024T	p.A675V	.	.	.
SLITRK6	84189	broad.mit.edu	36	13	85267441	85267441	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032229	exon2	c.C1204A	p.L402I	.	.	.
GPC5	2262	broad.mit.edu	36	13	91143784	91143784	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004466	exon3	c.G668A	p.R223H	.	.	.
DCT	1638	broad.mit.edu	36	13	93893700	93893700	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001922	exon7	c.G1372A	p.D458N	.	.	.
GPR180	160897	broad.mit.edu	36	13	94069456	94069456	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_180989	exon4	c.G557A	p.C186Y	.	.	.
ABCC4	10257	broad.mit.edu	36	13	94659804	94659804	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105515	exon6	c.G670A	p.A224T	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95049641	95049641	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014934	exon14	c.G1459T	p.E487X	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95075041	95075041	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014934	exon8	c.G954T	p.K318N	.	.	.
IPO5	3843	broad.mit.edu	36	13	97453156	97453156	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002271	exon16	c.G1415A	p.G472D	.	.	.
FARP1	10160	broad.mit.edu	36	13	97861077	97861077	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005766	exon15	c.C1691T	p.S564L	.	.	.
STK24	8428	broad.mit.edu	36	13	97916669	97916669	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003576	exon6	c.G781A	p.E261K	.	.	.
DOCK9	23348	broad.mit.edu	36	13	98247719	98247719	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015296	exon53	c.C5983T	p.R1995C	.	.	.
PCCA	5095	broad.mit.edu	36	13	99875905	99875905	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178004	exon20	c.G1764A	p.S588S	.	.	.
HPSE2	60495	broad.mit.edu	36	10	100894110	100894110	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166246	exon3	c.A485C	p.K162T	.	.	.
HPSE2	60495	broad.mit.edu	36	10	100985376	100985376	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166246	exon1	c.G174T	p.K58N	.	.	.
CNNM1	26507	broad.mit.edu	36	10	101137905	101137905	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020348	exon9	c.G2531A	p.R844H	.	.	.
ENTPD7	57089	broad.mit.edu	36	10	101429058	101429058	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020354	exon4	c.A242C	p.N81T	.	.	.
ENTPD7	57089	broad.mit.edu	36	10	101445832	101445832	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020354	exon9	c.G973A	p.E325K	.	.	.
COX15	1355	broad.mit.edu	36	10	101479316	101479316	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004376	exon2	c.C256A	p.L86I	.	.	.
ABCC2	1244	broad.mit.edu	36	10	101541986	101541986	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000392	exon3	c.C213T	p.F71F	.	.	.
DNMBP	23268	broad.mit.edu	36	10	101706429	101706429	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015221	exon4	c.C792T	p.F264F	.	.	.
PKD2L1	9033	broad.mit.edu	36	10	102044760	102044760	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016112	exon8	c.C1467T	p.F489F	.	.	.
C10orf76	79591	broad.mit.edu	36	10	103759746	103759746	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024541	exon12	c.G856A	p.A286T	.	.	.
LDB1	8861	broad.mit.edu	36	10	103857953	103857953	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113407	exon11	c.G1123A	p.E375K	.	.	.
NOLC1	9221	broad.mit.edu	36	10	103909765	103909765	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004741	exon8	c.G982T	p.E328X	.	.	.
NOLC1	9221	broad.mit.edu	36	10	103911608	103911608	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004741	exon12	c.G1877A	p.R626Q	.	.	.
NFKB2	4791	broad.mit.edu	36	10	104151513	104151513	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077493	exon21	c.A2315G	p.D772G	.	.	.
SUFU	51684	broad.mit.edu	36	10	104258953	104258953	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016169	exon2	c.T220C	p.Y74H	.	.	.
NT5C2	22978	broad.mit.edu	36	10	104842962	104842962	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012229	exon15	c.G1083T	p.K361N	.	.	.
GTPBP4	23560	broad.mit.edu	36	10	1050250	1050250	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012341	exon15	c.G1606A	p.D536N	.	.	.
IDI2	91734	broad.mit.edu	36	10	1058668	1058668	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033261	exon3	c.C190T	p.R64X	.	.	.
C10orf79	80217	broad.mit.edu	36	10	105913949	105913949	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025145	exon24	c.C3139T	p.R1047X	.	.	.
C10orf79	80217	broad.mit.edu	36	10	105975215	105975215	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025145	exon3	c.C410T	p.A137V	.	.	.
CCDC147	159686	broad.mit.edu	36	10	106118217	106118217	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008723	exon6	c.G839A	p.R280K	.	.	.
SORCS3	22986	broad.mit.edu	36	10	106995344	106995344	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014978	exon21	c.G2923A	p.D975N	.	.	.
SORCS1	114815	broad.mit.edu	36	10	108329137	108329137	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052918	exon25	c.C3351T	p.F1117F	.	.	.
SORCS1	114815	broad.mit.edu	36	10	108370263	108370263	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052918	exon20	c.G2709T	p.K903N	.	.	.
HABP2	3026	broad.mit.edu	36	10	115333092	115333092	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177660	exon10	c.C1144A	p.P382T	.	.	.
NRAP	4892	broad.mit.edu	36	10	115362117	115362117	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198060	exon30	c.G3364A	p.A1122T	.	.	.
NRAP	4892	broad.mit.edu	36	10	115364593	115364593	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198060	exon28	c.A3181C	p.S1061R	.	.	.
NRAP	4892	broad.mit.edu	36	10	115378741	115378741	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198060	exon20	c.G2070A	p.M690I	.	.	.
NRAP	4892	broad.mit.edu	36	10	115396686	115396686	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198060	exon10	c.G979T	p.E327X	.	.	.
DCLRE1A	9937	broad.mit.edu	36	10	115595522	115595522	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014881	exon4	c.C2290A	p.H764N	DCLRE1A,skin,NS,Substitution - Missense,0	.	.
DCLRE1A	9937	broad.mit.edu	36	10	115599138	115599138	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014881	exon2	c.G1716T	p.E572D	.	.	.
TDRD1	56165	broad.mit.edu	36	10	115963328	115963328	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198795	exon15	c.G2065T	p.E689X	.	.	.
TDRD1	56165	broad.mit.edu	36	10	115963833	115963833	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198795	exon16	c.G2182A	p.E728K	.	.	.
TDRD1	56165	broad.mit.edu	36	10	115977848	115977848	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198795	exon25	c.T3512G	p.F1171C	.	.	.
TRUB1	142940	broad.mit.edu	36	10	116692481	116692481	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139169	exon2	c.G374A	p.R125Q	.	.	.
ATRNL1	26033	broad.mit.edu	36	10	117476823	117476823	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207303	exon27	c.G3871T	p.E1291X	.	.	.
PNLIPRP3	119548	broad.mit.edu	36	10	118210548	118210548	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011709	exon6	c.G646A	p.V216I	.	.	.
ECHDC3	79746	broad.mit.edu	36	10	11829360	11829360	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024693	exon2	c.C177T	p.I59I	.	.	.
PNLIP	5406	broad.mit.edu	36	10	118300644	118300644	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000936	exon5	c.G369T	p.W123C	.	.	.
PNLIPRP2	5408	broad.mit.edu	36	10	118384382	118384382	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005396	exon9	c.C860T	p.S287L	.	.	.
PDZD8	118987	broad.mit.edu	36	10	119034677	119034677	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173791	exon5	c.T1557G	p.S519R	.	.	.
EIF3A	8661	broad.mit.edu	36	10	120808784	120808784	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003750	exon11	c.G1559T	p.R520I	.	.	.
UPF2	26019	broad.mit.edu	36	10	12111336	12111336	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080599	exon3	c.G559T	p.D187Y	.	.	.
TIAL1	7073	broad.mit.edu	36	10	121327187	121327187	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033925	exon8	c.A659C	p.K220T	.	.	.
SEC23IP	11196	broad.mit.edu	36	10	121682588	121682588	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007190	exon17	c.G2840A	p.R947Q	.	.	.
DHTKD1	55526	broad.mit.edu	36	10	12169593	12169593	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018706	exon4	c.C576T	p.G192G	.	.	.
ATE1	11101	broad.mit.edu	36	10	123673774	123673774	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001976	exon2	c.G167A	p.R56Q	.	.	.
DMBT1	1755	broad.mit.edu	36	10	124329125	124329125	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007329	exon10	c.G721A	p.D241N	.	.	.
DMBT1	1755	broad.mit.edu	36	10	124366751	124366751	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007329	exon37	c.C4489G	p.R1497G	.	.	.
DMBT1	1755	broad.mit.edu	36	10	124370862	124370862	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007329	exon41	c.G5197A	p.E1733K	.	.	.
C10orf120	399814	broad.mit.edu	36	10	124447284	124447284	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010912	exon3	c.T963G	p.S321R	.	.	.
CUZD1	50624	broad.mit.edu	36	10	124583199	124583199	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022034	exon8	c.C1630T	p.R544X	.	.	.
CUZD1	50624	broad.mit.edu	36	10	124587044	124587044	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022034	exon4	c.C465T	p.G155G	.	.	.
PSTK	118672	broad.mit.edu	36	10	124732292	124732292	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153336	exon2	c.C270A	p.F90L	.	.	.
C10orf137	26098	broad.mit.edu	36	10	127404353	127404353	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015608	exon6	c.G748A	p.E250K	.	.	.
C10orf137	26098	broad.mit.edu	36	10	127419622	127419622	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015608	exon16	c.T2131C	p.L711L	.	.	.
C10orf137	26098	broad.mit.edu	36	10	127428069	127428069	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015608	exon21	c.C3120T	p.C1040C	.	.	.
ADAM12	8038	broad.mit.edu	36	10	127796636	127796636	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021641	exon6	c.G573T	p.K191N	.	.	.
FAM196A	642938	broad.mit.edu	36	10	128842176	128842176	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039762	exon5	c.C1186T	p.L396F	.	.	.
MKI67	4288	broad.mit.edu	36	10	129791975	129791975	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145966	exon12	c.G7039A	p.E2347K	.	.	.
MKI67	4288	broad.mit.edu	36	10	129796092	129796092	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145966	exon12	c.A2922C	p.Q974H	.	.	.
OPTN	10133	broad.mit.edu	36	10	13192361	13192361	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021980	exon3	c.G248A	p.R83H	.	.	.
PHYH	5264	broad.mit.edu	36	10	13360338	13360338	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037537	exon8	c.G686A	p.R229Q	.	.	.
PHYH	5264	broad.mit.edu	36	10	13377574	13377574	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006214	exon3	c.G173T	p.R58I	.	.	.
LRRC27	80313	broad.mit.edu	36	10	134011618	134011618	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143758	exon6	c.C694T	p.L232F	.	.	.
FRMD4A	55691	broad.mit.edu	36	10	13789080	13789080	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018027	exon13	c.G799T	p.E267X	.	.	.
NMT2	9397	broad.mit.edu	36	10	15210401	15210401	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004808	exon8	c.G953T	p.R318I	.	.	.
NMT2	9397	broad.mit.edu	36	10	15223431	15223431	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004808	exon2	c.C242T	p.S81L	.	.	.
ITGA8	8516	broad.mit.edu	36	10	15689684	15689684	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003638	exon17	c.C1762T	p.R588X	.	.	.
CUBN	8029	broad.mit.edu	36	10	16997961	16997961	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081	exon46	c.G7075T	p.D2359Y	.	.	.
CUBN	8029	broad.mit.edu	36	10	17000763	17000763	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081	exon45	c.G6864A	p.S2288S	.	.	.
CUBN	8029	broad.mit.edu	36	10	17066282	17066282	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081	exon30	c.C4353A	p.I1451I	.	.	.
PLXDC2	84898	broad.mit.edu	36	10	20375934	20375934	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032812	exon3	c.C455T	p.T152I	.	.	.
PLXDC2	84898	broad.mit.edu	36	10	20574338	20574338	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032812	exon13	c.C1371T	p.I457I	.	.	.
PLXDC2	84898	broad.mit.edu	36	10	20608642	20608642	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032812	exon14	c.G1478A	p.R493H	.	.	.
NEBL	10529	broad.mit.edu	36	10	21114784	21114784	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006393	exon28	c.C2943T	p.I981I	.	.	.
NEBL	10529	broad.mit.edu	36	10	21290699	21290699	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213569	exon4	c.G265A	p.D89N	.	.	.
C10orf114	399726	broad.mit.edu	36	10	21824632	21824632	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010911	exon2	c.C314T	p.A105V	.	.	.
ARMC3	219681	broad.mit.edu	36	10	23290996	23290996	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173081	exon7	c.A715C	p.K239Q	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24802641	24802641	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019590	exon6	c.C1325T	p.A442V	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24872009	24872009	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019590	exon19	c.C3804T	p.F1268F	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24872973	24872973	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019590	exon19	c.C4768T	p.R1590C	.	.	.
GPR158	57512	broad.mit.edu	36	10	25879974	25879974	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020752	exon6	c.C1468T	p.L490F	.	.	.
GPR158	57512	broad.mit.edu	36	10	25925603	25925603	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020752	exon10	c.G2024A	p.R675Q	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26486401	26486401	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017433	exon26	c.C2950T	p.R984X	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26503046	26503046	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017433	exon30	c.A3847C	p.K1283Q	.	.	.
APBB1IP	54518	broad.mit.edu	36	10	26840684	26840684	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019043	exon7	c.C534T	p.L178L	.	.	.
APBB1IP	54518	broad.mit.edu	36	10	26865096	26865096	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019043	exon10	c.C988T	p.R330C	.	.	.
ANKRD26	22852	broad.mit.edu	36	10	27334613	27334613	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014915	exon34	c.C5045A	p.S1682Y	.	.	.
ANKRD26	22852	broad.mit.edu	36	10	27351500	27351500	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014915	exon29	c.A4208G	p.K1403R	.	.	.
ANKRD26	22852	broad.mit.edu	36	10	27351582	27351582	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014915	exon29	c.G4126A	p.E1376K	.	.	.
YME1L1	10730	broad.mit.edu	36	10	27451842	27451842	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014263	exon11	c.G1169T	p.R390I	.	.	.
ARMC4	55130	broad.mit.edu	36	10	28312891	28312891	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018076	exon6	c.C706T	p.R236X	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30356277	30356277	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020848	exon3	c.C2806T	p.R936C	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30357427	30357427	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020848	exon3	c.C1656T	p.C552C	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30358415	30358415	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020848	exon3	c.C668T	p.S223F	.	.	.
ZNF438	220929	broad.mit.edu	36	10	31177719	31177719	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143771	exon7	c.C1591T	p.R531C	.	.	.
ARHGAP12	94134	broad.mit.edu	36	10	32141708	32141708	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018287	exon15	c.A1884C	p.K628N	.	.	.
ARHGAP12	94134	broad.mit.edu	36	10	32237514	32237514	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018287	exon3	c.G276A	p.T92T	.	.	.
KIF5B	3799	broad.mit.edu	36	10	32363766	32363766	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004521	exon11	c.A969C	p.K323N	.	.	.
ITGB1	3688	broad.mit.edu	36	10	33249288	33249288	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133376	exon10	c.G1160A	p.G387D	.	.	.
ITGB1	3688	broad.mit.edu	36	10	33258862	33258862	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133376	exon4	c.G270T	p.K90N	.	.	.
CCNY	219771	broad.mit.edu	36	10	35845554	35845554	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145012	exon4	c.A362C	p.K121T	.	.	.
ZNF37A	7587	broad.mit.edu	36	10	38446342	38446342	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007094	exon8	c.G257T	p.R86I	.	.	.
ZNF37A	7587	broad.mit.edu	36	10	38446704	38446704	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007094	exon8	c.G619T	p.E207X	.	.	.
ZNF37A	7587	broad.mit.edu	36	10	38446890	38446890	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007094	exon8	c.A805C	p.K269Q	.	.	.
FXYD4	53828	broad.mit.edu	36	10	43191182	43191183	+	Missense_Mutation	DNP	AG	CT	CT	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184963	exon7	c.206_207CT	.	.	.	.
HNRNPF	3185	broad.mit.edu	36	10	43202949	43202949	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098208	exon3	c.C390A	p.F130L	.	.	.
ZNF32	7580	broad.mit.edu	36	10	43460141	43460141	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006973	exon3	c.C185T	p.S62L	.	.	.
OR13A1	79290	broad.mit.edu	36	10	45119436	45119436	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004297	exon4	c.G441A	p.P147P	.	.	.
GDF10	2662	broad.mit.edu	36	10	48048737	48048737	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004962	exon2	c.C1155T	p.F385F	.	.	.
FRMPD2	143162	broad.mit.edu	36	10	49122885	49122885	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018071	exon4	c.C323A	p.S108Y	.	.	.
C10orf71	118461	broad.mit.edu	36	10	50201124	50201124	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135196	exon3	c.C528T	p.F176F	.	.	.
ERCC6	2074	broad.mit.edu	36	10	50348854	50348854	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000124	exon18	c.G3158A	p.R1053H	.	.	.
PGBD3	267004	broad.mit.edu	36	10	50394393	50394393	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170753	exon2	c.G774T	p.M258I	.	.	.
CHAT	1103	broad.mit.edu	36	10	50505662	50505662	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142929	exon7	c.C582A	p.F194L	.	.	.
NCOA4	8031	broad.mit.edu	36	10	51255592	51255592	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145261	exon9	c.G1733A	p.R578Q	.	.	.
CSTF2T	23283	broad.mit.edu	36	10	53128337	53128337	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015235	exon1	c.C979T	p.R327X	.	.	.
CSTF2T	23283	broad.mit.edu	36	10	53129047	53129047	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015235	exon1	c.A269G	p.D90G	.	.	.
C10orf18	54906	broad.mit.edu	36	10	5831704	5831704	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017782	exon15	c.G6314A	p.R2105Q	.	.	.
FAM13C	220965	broad.mit.edu	36	10	60699755	60699755	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143773	exon8	c.C464T	p.S155L	.	.	.
ANK3	288	broad.mit.edu	36	10	61503930	61503930	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020987	exon37	c.C6715T	p.R2239C	.	.	.
ANK3	288	broad.mit.edu	36	10	61616501	61616501	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020987	exon17	c.C2063T	p.A688V	.	.	.
PFKFB3	5209	broad.mit.edu	36	10	6305976	6305976	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145443	exon12	c.G1203A	p.T401T	.	.	.
PRKCQ	5588	broad.mit.edu	36	10	6597099	6597099	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006257	exon2	c.C5T	p.S2L	.	.	.
CTNNA3	29119	broad.mit.edu	36	10	68196068	68196068	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013266	exon9	c.A1241G	p.Y414C	.	.	.
LRRTM3	347731	broad.mit.edu	36	10	68527544	68527544	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178011	exon3	c.A1730C	p.K577T	.	.	.
SIRT1	23411	broad.mit.edu	36	10	69342426	69342426	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142498	exon7	c.G662A	p.R221Q	.	.	.
MYPN	84665	broad.mit.edu	36	10	69604266	69604266	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032578	exon11	c.G2411A	p.G804E	.	.	.
DNA2	1763	broad.mit.edu	36	10	69846478	69846478	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080449	exon20	c.A3366C	p.E1122D	.	.	.
DNA2	1763	broad.mit.edu	36	10	69848880	69848880	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080449	exon19	c.G3142A	p.E1048K	.	.	.
DNA2	1763	broad.mit.edu	36	10	69872685	69872685	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080449	exon9	c.G1668A	p.S556S	.	.	.
TET1	80312	broad.mit.edu	36	10	70075750	70075750	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030625	exon4	c.G3258A	p.S1086S	.	.	.
TET1	80312	broad.mit.edu	36	10	70096810	70096810	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030625	exon7	c.T4464G	p.V1488V	.	.	.
DDX50	79009	broad.mit.edu	36	10	70364583	70364583	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024045	exon10	c.G1424A	p.R475H	.	.	.
KIAA1279	26128	broad.mit.edu	36	10	70445387	70445387	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015634	exon7	c.C1075T	p.R359W	.	.	.
SRGN	5552	broad.mit.edu	36	10	70526938	70526938	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002727	exon2	c.G172A	p.E58K	.	.	.
PPA1	5464	broad.mit.edu	36	10	71638991	71638991	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021129	exon8	c.A701G	p.K234R	.	.	.
SGPL1	8879	broad.mit.edu	36	10	72289192	72289192	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003901	exon7	c.G545A	p.R182H	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7245780	7245780	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029880	exon21	c.C2643T	p.I881I	.	.	.
CDH23	64072	broad.mit.edu	36	10	73228995	73228995	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171933	exon4	c.C456T	p.I152I	.	.	.
CDH23	64072	broad.mit.edu	36	10	73237150	73237150	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171933	exon11	c.C1569T	p.I523I	.	.	.
ECD	11319	broad.mit.edu	36	10	74578081	74578081	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135753	exon7	c.G871A	p.A291T	.	.	.
PPP3CB	5532	broad.mit.edu	36	10	74876296	74876296	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142353	exon11	c.C1231T	p.R411X	.	.	.
MYOZ1	58529	broad.mit.edu	36	10	75064403	75064403	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021245	exon4	c.G347A	p.S116N	.	.	.
ITIH2	3698	broad.mit.edu	36	10	7802896	7802896	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002216	exon7	c.C702T	p.F234F	.	.	.
KCNMA1	3778	broad.mit.edu	36	10	78319218	78319218	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161353	exon27	c.A3407C	p.K1136T	.	.	.
KCNMA1	3778	broad.mit.edu	36	10	78383647	78383647	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161353	exon20	c.A2228G	p.N743S	.	.	.
KIN	22944	broad.mit.edu	36	10	7851299	7851299	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012311	exon8	c.T684C	p.S228S	.	.	.
MAT1A	4143	broad.mit.edu	36	10	82024313	82024313	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000429	exon8	c.G1028A	p.R343Q	.	.	.
MAT1A	4143	broad.mit.edu	36	10	82026249	82026249	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000429	exon6	c.G631A	p.E211K	.	.	.
LRIT2	340745	broad.mit.edu	36	10	85975219	85975219	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017924	exon1	c.T38C	p.V13A	.	.	.
PAPSS2	9060	broad.mit.edu	36	10	89491095	89491095	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001015880	exon10	c.G1210T	p.E404X	.	.	.
PANK1	53354	broad.mit.edu	36	10	91343638	91343638	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148977	exon4	c.G1399A	p.D467N	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91476216	91476216	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016195	exon16	c.G2068A	p.E690K	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91487549	91487549	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016195	exon20	c.G2851A	p.E951K	.	.	.
HECTD2	143279	broad.mit.edu	36	10	93234330	93234330	+	De_novo_Start_OutOfFrame	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182765	exon9	c.T908G	p.F303C	.	.	.
HECTD2	143279	broad.mit.edu	36	10	93234980	93234980	+	De_novo_Start_OutOfFrame	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182765	exon10	c.T1034G	p.L345W	.	.	.
PPP1R3C	5507	broad.mit.edu	36	10	93379691	93379691	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005398	exon2	c.A927C	p.R309S	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93685402	93685402	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003972	exon2	c.G23A	p.R8H	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93757921	93757921	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003972	exon26	c.G3722A	p.R1241Q	.	.	.
CPEB3	22849	broad.mit.edu	36	10	93942336	93942336	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014912	exon3	c.C1043T	p.S348L	.	.	.
EXOC6	54536	broad.mit.edu	36	10	94659328	94659328	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013848	exon6	c.G608A	p.R203Q	.	.	.
EXOC6	54536	broad.mit.edu	36	10	94705335	94705335	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013848	exon17	c.A1642C	p.N548H	.	.	.
EXOC6	54536	broad.mit.edu	36	10	94747221	94747221	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013848	exon19	c.C1949T	p.A650V	.	.	.
MYOF	26509	broad.mit.edu	36	10	95072885	95072885	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133337	exon47	c.A5357G	p.D1786G	.	.	.
PDE6C	5146	broad.mit.edu	36	10	95412919	95412919	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006204	exon21	c.G2512A	p.E838K	.	.	.
PLCE1	51196	broad.mit.edu	36	10	96056391	96056391	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165979	exon25	c.C4916T	p.A1639V	.	.	.
NOC3L	64318	broad.mit.edu	36	10	96083951	96083951	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022451	exon21	c.G2376A	p.T792T	.	.	.
TBC1D12	23232	broad.mit.edu	36	10	96243153	96243153	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015188	exon4	c.G1253A	p.R418Q	.	.	.
TBC1D12	23232	broad.mit.edu	36	10	96246879	96246879	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015188	exon5	c.G1372A	p.V458I	.	.	.
HELLS	3070	broad.mit.edu	36	10	96307901	96307901	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018063	exon4	c.G292T	p.E98X	.	.	.
ALDH18A1	5832	broad.mit.edu	36	10	97387079	97387079	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017423	exon4	c.C408T	p.S136S	.	.	.
ENTPD1	953	broad.mit.edu	36	10	97614573	97614573	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001776	exon9	c.G1291A	p.A431T	.	.	.
C10orf12	26148	broad.mit.edu	36	10	98732596	98732596	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015652	exon1	c.G1459A	p.E487K	.	.	.
SLIT1	6585	broad.mit.edu	36	10	98784263	98784263	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003061	exon23	c.C2393T	p.S798F	.	.	.
SLIT1	6585	broad.mit.edu	36	10	98815777	98815777	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003061	exon5	c.C470T	p.T157M	.	.	.
CRTAC1	55118	broad.mit.edu	36	10	99760888	99760888	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018058	exon2	c.C221T	p.A74V	.	.	.
ST8SIA4	7903	broad.mit.edu	36	5	100259332	100259332	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175052	exon2	c.G170A	p.R57Q	.	.	.
SLCO4C1	353189	broad.mit.edu	36	5	101613338	101613338	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_180991	exon9	c.C1523T	p.S508L	.	.	.
SLCO6A1	133482	broad.mit.edu	36	5	101763194	101763194	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173488	exon10	c.G1778T	p.G593V	.	.	.
PAM	5066	broad.mit.edu	36	5	102323480	102323480	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138822	exon12	c.G908A	p.G303D	.	.	.
PPIP5K2	23262	broad.mit.edu	36	5	102546912	102546912	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015216	exon24	c.C3001T	p.R1001C	.	.	.
C5orf30	90355	broad.mit.edu	36	5	102639529	102639529	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033211	exon3	c.G10A	p.D4N	.	.	.
FER	2241	broad.mit.edu	36	5	108231438	108231438	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005246	exon6	c.T553C	p.Y185H	.	.	.
STARD4	134429	broad.mit.edu	36	5	110863662	110863662	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139164	exon6	c.C439T	p.R147X	.	.	.
EPB41L4A	64097	broad.mit.edu	36	5	111628547	111628547	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022140	exon6	c.C499T	p.P167S	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11170571	11170571	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001332	exon13	c.C2268T	p.I756I	.	.	.
APC	324	broad.mit.edu	36	5	112203032	112203032	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.C3788A	p.S1263X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.
APC	324	broad.mit.edu	36	5	112203412	112203412	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.G4168T	p.E1390X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.
APC	324	broad.mit.edu	36	5	112205765	112205765	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.A6521C	p.K2174T	.	.	.
MCC	4163	broad.mit.edu	36	5	112465517	112465517	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085377	exon8	c.C1216T	p.L406F	.	.	.
MCC	4163	broad.mit.edu	36	5	112704287	112704287	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085377	exon3	c.C455A	p.S152Y	.	.	.
MCC	4163	broad.mit.edu	36	5	112748616	112748616	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085377	exon2	c.G363T	p.K121N	.	.	.
YTHDC2	64848	broad.mit.edu	36	5	112929505	112929505	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022828	exon21	c.G2732A	p.R911Q	.	.	.
CCDC112	153733	broad.mit.edu	36	5	114634814	114634814	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040440	exon7	c.G1327A	p.E443K	.	.	.
AQPEP	206338	broad.mit.edu	36	5	115374400	115374400	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173800	exon14	c.A2157C	p.E719D	.	.	.
FAM170A	340069	broad.mit.edu	36	5	118996437	118996437	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182761	exon2	c.G166A	p.E56K	.	.	.
PRR16	51334	broad.mit.edu	36	5	120049667	120049667	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016644	exon3	c.G210A	p.E70E	.	.	.
CEP120	153241	broad.mit.edu	36	5	122710130	122710130	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166226	exon20	c.A2865C	p.K955N	.	.	.
PHAX	51808	broad.mit.edu	36	5	125988252	125988252	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032177	exon5	c.G1002T	p.M334I	.	.	.
SLC12A2	6558	broad.mit.edu	36	5	127548065	127548065	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001046	exon25	c.T3408C	p.D1136D	.	.	.
FBN2	2201	broad.mit.edu	36	5	127732873	127732873	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001999	exon16	c.C2149T	p.R717C	.	.	.
ADAMTS19	171019	broad.mit.edu	36	5	128960243	128960243	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133638	exon8	c.G1447T	p.E483X	.	.	.
ADAMTS19	171019	broad.mit.edu	36	5	129100723	129100723	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133638	exon23	c.G3537T	p.K1179N	.	.	.
SLC22A4	6583	broad.mit.edu	36	5	131685792	131685792	+	Silent	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003059	exon4	c.C669G	p.G223G	.	.	.
RAD50	10111	broad.mit.edu	36	5	131952380	131952380	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005732	exon8	c.G1154A	p.R385H	.	.	.
KIF3A	11127	broad.mit.edu	36	5	132074569	132074569	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007054	exon9	c.G1209T	p.E403D	.	.	.
TCF7	6932	broad.mit.edu	36	5	133505884	133505884	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003202	exon6	c.G745A	p.D249N	.	.	.
CDKL3	51265	broad.mit.edu	36	5	133671820	133671820	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113575	exon9	c.C1272T	p.C424C	.	.	.
CDKL3	51265	broad.mit.edu	36	5	133672036	133672036	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113575	exon9	c.G1056A	p.K352K	.	.	.
UBE2B	7320	broad.mit.edu	36	5	133753909	133753909	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003337	exon6	c.C425T	p.S142L	.	.	.
TXNDC15	79770	broad.mit.edu	36	5	134263219	134263219	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024715	exon5	c.G1028A	p.R343Q	.	.	.
FBXL21	26223	broad.mit.edu	36	5	135304872	135304872	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012159	exon8	c.C918T	p.F306F	.	.	.
PKD2L2	27039	broad.mit.edu	36	5	137289512	137289512	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014386	exon12	c.G1666A	p.E556K	.	.	.
WNT8A	7478	broad.mit.edu	36	5	137452570	137452570	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058244	exon5	c.G423A	p.R141R	.	.	.
BRD8	10902	broad.mit.edu	36	5	137514557	137514557	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139199	exon22	c.G2896A	p.E966K	.	.	.
BRD8	10902	broad.mit.edu	36	5	137527911	137527911	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006696	exon14	c.T2041C	p.S681P	.	.	.
KIF20A	10112	broad.mit.edu	36	5	137546769	137546769	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005733	exon8	c.G845A	p.R282Q	.	.	.
CDC23	8697	broad.mit.edu	36	5	137555904	137555904	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004661	exon11	c.G1239T	p.K413N	.	.	.
KDM3B	51780	broad.mit.edu	36	5	137789157	137789157	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016604	exon17	c.C4398T	p.F1466F	.	.	.
CTNNA1	1495	broad.mit.edu	36	5	138267991	138267991	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001903	exon10	c.C1351T	p.R451X	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13829640	13829640	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001369	exon55	c.A9281C	p.K3094T	.	.	.
MATR3	9782	broad.mit.edu	36	5	138689039	138689039	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001194955	exon13	c.C2160T	p.I720I	.	.	.
SLC23A1	9963	broad.mit.edu	36	5	138735699	138735699	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005847	exon14	c.C1692T	p.I564I	.	.	.
DNAJC18	202052	broad.mit.edu	36	5	138777770	138777770	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152686	exon8	c.T1043G	p.L348R	.	.	.
DNAJC18	202052	broad.mit.edu	36	5	138788651	138788651	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152686	exon5	c.G611A	p.R204Q	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13917713	13917713	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001369	exon28	c.G4389A	p.W1463X	.	.	.
PSD2	84249	broad.mit.edu	36	5	139202219	139202219	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032289	exon15	c.G2292T	p.K764N	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13929860	13929860	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001369	exon22	c.T3329C	p.V1110A	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13947780	13947780	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001369	exon16	c.G2410T	p.E804X	.	.	.
C5orf53	492311	broad.mit.edu	36	5	139488273	139488273	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007189	exon1	c.C28T	p.R10C	.	.	.
ANKHD1-EIF4EBP3	404734	broad.mit.edu	36	5	139888774	139888774	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017747	exon29	c.C6059A	p.S2020Y	.	.	.
IK	3550	broad.mit.edu	36	5	140012832	140012832	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006083	exon5	c.A323C	p.D108A	.	.	.
HARS	3035	broad.mit.edu	36	5	140036641	140036641	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002109	exon10	c.C976T	p.R326X	.	.	.
HARS	3035	broad.mit.edu	36	5	140042952	140042952	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002109	exon3	c.C217T	p.R73C	.	.	.
PCDHA1	56147	broad.mit.edu	36	5	140146509	140146509	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031410	exon1	c.G450A	p.S150S	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140161529	140161529	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031497	exon1	c.A563C	p.E188A	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140161762	140161762	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031497	exon1	c.G796A	p.A266T	.	.	.
PCDHA4	56144	broad.mit.edu	36	5	140167522	140167522	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031500	exon1	c.T566C	p.V189A	.	.	.
PCDHA4	56144	broad.mit.edu	36	5	140167907	140167907	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031500	exon1	c.A951C	p.E317D	.	.	.
PCDHA4	56144	broad.mit.edu	36	5	140168826	140168826	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031500	exon1	c.G1870A	p.V624M	.	.	.
PCDHA4	56144	broad.mit.edu	36	5	140169327	140169327	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031500	exon1	c.G2371T	p.E791X	.	.	.
PCDHA6	56142	broad.mit.edu	36	5	140190229	140190229	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018909	exon1	c.A2369C	p.D790A	.	.	.
PCDHA8	56140	broad.mit.edu	36	5	140201296	140201296	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031856	exon1	c.A206C	p.K69T	.	.	.
PCDHA8	56140	broad.mit.edu	36	5	140201817	140201817	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031856	exon1	c.G727A	p.E243K	.	.	.
PCDHA8	56140	broad.mit.edu	36	5	140201980	140201980	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031856	exon1	c.G890A	p.R297Q	.	.	.
PCDHA10	56139	broad.mit.edu	36	5	140216689	140216689	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031860	exon1	c.A872C	p.K291T	.	.	.
PCDHA11	56138	broad.mit.edu	36	5	140229254	140229254	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031861	exon1	c.G382A	p.D128N	.	.	.
PCDHA13	56136	broad.mit.edu	36	5	140243118	140243118	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031865	exon1	c.G1081T	p.E361X	.	.	.
PCDHAC2	56134	broad.mit.edu	36	5	140328322	140328322	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018899	exon1	c.G1787A	p.R596Q	.	.	.
PCDHB3	56132	broad.mit.edu	36	5	140461801	140461801	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018937	exon1	c.G1384A	p.E462K	.	.	.
PCDHB5	26167	broad.mit.edu	36	5	140496899	140496899	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015669	exon1	c.G1699A	p.G567S	.	.	.
PCDHB6	56130	broad.mit.edu	36	5	140511364	140511364	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018939	exon1	c.G1342A	p.A448T	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140533792	140533792	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018940	exon1	c.G1192A	p.E398K	.	.	.
PCDHB8	56128	broad.mit.edu	36	5	140538574	140538574	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019120	exon1	c.A775C	p.S259R	.	.	.
PCDHB10	56126	broad.mit.edu	36	5	140552438	140552438	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018930	exon1	c.C129T	p.S43S	.	.	.
PCDHB12	56124	broad.mit.edu	36	5	140569508	140569508	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018932	exon1	c.C845T	p.S282F	.	.	.
PCDHB13	56123	broad.mit.edu	36	5	140575499	140575499	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018933	exon1	c.G1620A	p.A540A	.	.	.
PCDHB13	56123	broad.mit.edu	36	5	140576003	140576003	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018933	exon1	c.C2124T	p.F708F	.	.	.
PCDHB14	56122	broad.mit.edu	36	5	140583834	140583834	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018934	exon1	c.C573T	p.Y191Y	.	.	.
PCDHB15	56121	broad.mit.edu	36	5	140606655	140606655	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018935	exon1	c.C1325T	p.S442L	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140691988	140691988	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031993	exon1	c.G1553A	p.R518Q	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140692082	140692082	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031993	exon1	c.C1647T	p.S549S	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140701162	140701162	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032009	exon1	c.A2440G	p.T814A	.	.	.
PCDHGB1	56104	broad.mit.edu	36	5	140710627	140710627	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018922	exon1	c.C616T	p.R206C	.	.	.
PCDHGA4	56111	broad.mit.edu	36	5	140715838	140715838	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018917	exon1	c.C887A	p.S296Y	.	.	.
PCDHGA5	56110	broad.mit.edu	36	5	140724947	140724947	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032054	exon1	c.C866T	p.S289L	.	.	.
PCDHGB3	56102	broad.mit.edu	36	5	140730527	140730527	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018924	exon1	c.G382A	p.D128N	.	.	.
PCDHGA7	56108	broad.mit.edu	36	5	140743452	140743452	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032087	exon1	c.G802A	p.D268N	.	.	.
PCDHGA8	9708	broad.mit.edu	36	5	140753595	140753595	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032088	exon1	c.G1031A	p.R344K	.	.	.
PCDHGB5	56101	broad.mit.edu	36	5	140759143	140759143	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032099	exon1	c.A1265G	p.D422G	.	.	.
PCDHGB5	56101	broad.mit.edu	36	5	140759832	140759832	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032099	exon1	c.G1954A	p.A652T	.	.	.
PCDHGB6	56100	broad.mit.edu	36	5	140768608	140768608	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018926	exon1	c.G655A	p.D219N	.	.	.
PCDHGB6	56100	broad.mit.edu	36	5	140769067	140769067	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018926	exon1	c.C1114T	p.R372W	.	.	.
PCDHGB7	56099	broad.mit.edu	36	5	140777876	140777876	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032101	exon1	c.G266A	p.R89Q	.	.	.
PCDHGB7	56099	broad.mit.edu	36	5	140779600	140779600	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032101	exon1	c.T1990C	p.F664L	.	.	.
PCDHGA11	56105	broad.mit.edu	36	5	140782323	140782323	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018914	exon1	c.A1345G	p.N449D	.	.	.
PCDHGC4	56098	broad.mit.edu	36	5	140847073	140847073	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032406	exon1	c.C2149T	p.R717C	.	.	.
PCDHGC4	56098	broad.mit.edu	36	5	140847265	140847265	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032406	exon1	c.C2341T	p.R781W	.	.	.
FCHSD1	89848	broad.mit.edu	36	5	141004621	141004621	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033449	exon15	c.G1513A	p.E505K	.	.	.
ARAP3	64411	broad.mit.edu	36	5	141030334	141030334	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022481	exon14	c.A2036G	p.Y679C	.	.	.
RNF14	9604	broad.mit.edu	36	5	141343130	141343130	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183401	exon7	c.G1065T	p.E355D	.	.	.
FGF1	2246	broad.mit.edu	36	5	141955209	141955209	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000800	exon4	c.T298C	p.F100L	.	.	.
ARHGAP26	23092	broad.mit.edu	36	5	142373849	142373849	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015071	exon12	c.G1119A	p.S373S	.	.	.
NR3C1	2908	broad.mit.edu	36	5	142759933	142759933	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018074	exon2	c.A665C	p.N222T	.	.	.
NR3C1	2908	broad.mit.edu	36	5	142760097	142760097	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018074	exon2	c.G501A	p.Q167Q	.	.	.
NR3C1	2908	broad.mit.edu	36	5	142760595	142760595	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018074	exon2	c.G3T	p.M1I	.	.	.
GRXCR2	643226	broad.mit.edu	36	5	145226424	145226424	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080516	exon2	c.C397T	p.R133X	.	.	.
LARS	51520	broad.mit.edu	36	5	145483745	145483745	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020117	exon29	c.C3089T	p.S1030L	.	.	.
TRIO	7204	broad.mit.edu	36	5	14561111	14561111	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007118	exon57	c.C8874T	p.F2958F	.	.	.
POU4F3	5459	broad.mit.edu	36	5	145700110	145700110	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002700	exon2	c.G927T	p.E309D	.	.	.
SPINK14	408187	broad.mit.edu	36	5	147529499	147529499	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001325	exon1	c.C11A	p.S4Y	.	.	.
FBXO38	81545	broad.mit.edu	36	5	147775711	147775711	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_205836	exon11	c.A1292G	p.D431G	.	.	.
FBXO38	81545	broad.mit.edu	36	5	147786995	147786995	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_205836	exon15	c.C1945T	p.R649X	.	.	.
SLC26A2	1836	broad.mit.edu	36	5	149341293	149341293	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000112	exon3	c.T1944G	p.T648T	.	.	.
ZNF300	91975	broad.mit.edu	36	5	150256053	150256053	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172831	exon7	c.T989C	p.V330A	.	.	.
FAT2	2196	broad.mit.edu	36	5	150905617	150905617	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001447	exon9	c.C5264A	p.A1755D	.	.	.
FAT2	2196	broad.mit.edu	36	5	150926941	150926941	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001447	exon1	c.C1745T	p.S582L	.	.	.
FAT2	2196	broad.mit.edu	36	5	150928062	150928062	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001447	exon1	c.G624T	p.K208N	.	.	.
G3BP1	10146	broad.mit.edu	36	5	151150089	151150089	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005754	exon3	c.G108T	p.K36N	.	.	.
LPCAT1	79888	broad.mit.edu	36	5	1516913	1516913	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024830	exon14	c.C1458T	p.F486F	.	.	.
LARP1	23367	broad.mit.edu	36	5	154171103	154171103	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015315	exon17	c.G2716A	p.E906K	.	.	.
GEMIN5	25929	broad.mit.edu	36	5	154248114	154248114	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015465	exon28	c.A4376G	p.D1459G	.	.	.
KIF4B	285643	broad.mit.edu	36	5	154374248	154374248	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099293	exon1	c.T636C	p.S212S	.	.	.
KIF4B	285643	broad.mit.edu	36	5	154377255	154377255	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099293	exon1	c.G3643A	p.A1215T	.	.	.
TIMD4	91937	broad.mit.edu	36	5	156309307	156309307	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138379	exon4	c.C693T	p.V231V	.	.	.
FAM71B	153745	broad.mit.edu	36	5	156522379	156522379	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130899	exon2	c.G1475A	p.R492Q	.	.	.
FAM71B	153745	broad.mit.edu	36	5	156522622	156522622	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130899	exon2	c.G1232A	p.R411Q	.	.	.
ITK	3702	broad.mit.edu	36	5	156540638	156540638	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005546	exon1	c.G72A	p.S24S	.	.	.
ITK	3702	broad.mit.edu	36	5	156582541	156582541	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005546	exon6	c.G586A	p.E196K	.	.	.
FABP6	2172	broad.mit.edu	36	5	159589163	159589163	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130958	exon4	c.C168T	p.F56F	.	.	.
SLU7	10569	broad.mit.edu	36	5	159774752	159774752	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006425	exon2	c.G128A	p.R43Q	.	.	.
FBXL7	23194	broad.mit.edu	36	5	15990016	15990016	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012304	exon4	c.G1197T	p.K399N	.	.	.
ATP10B	23120	broad.mit.edu	36	5	159929119	159929119	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025153	exon25	c.C3900T	p.L1300L	.	.	.
GABRA6	2559	broad.mit.edu	36	5	161051661	161051661	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000811	exon8	c.C963T	p.F321F	.	.	.
HMMR	3161	broad.mit.edu	36	5	162835076	162835076	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012485	exon10	c.C1040T	p.S347F	.	.	.
MYO10	4651	broad.mit.edu	36	5	16721425	16721425	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012334	exon40	c.C6036T	p.I2012I	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167563313	167563313	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122679	exon18	c.C3445A	p.L1149I	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167607137	167607137	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122679	exon27	c.C6588T	p.Y2196Y	.	.	.
SLIT3	6586	broad.mit.edu	36	5	168045339	168045339	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003062	exon31	c.C3486T	p.F1162F	.	.	.
SLIT3	6586	broad.mit.edu	36	5	168133842	168133842	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003062	exon13	c.C1271T	p.A424V	.	.	.
CCDC99	54908	broad.mit.edu	36	5	168960973	168960973	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017785	exon11	c.G1436A	p.R479Q	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169378595	169378595	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004946	exon33	c.A3286G	p.T1096A	.	.	.
C5orf41	153222	broad.mit.edu	36	5	172446153	172446153	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168393	exon3	c.G53A	p.R18Q	.	.	.
HMP19	51617	broad.mit.edu	36	5	173463938	173463938	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015980	exon4	c.C315T	p.F105F	.	.	.
DRD1	1812	broad.mit.edu	36	5	174802589	174802589	+	Silent	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000794	exon2	c.G120T	p.G40G	.	.	.
TSPAN17	26262	broad.mit.edu	36	5	176011232	176011232	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001006616	exon2	c.G97A	p.A33T	.	.	.
NSD1	64324	broad.mit.edu	36	5	176563839	176563839	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022455	exon4	c.C1176T	p.F392F	.	.	.
NSD1	64324	broad.mit.edu	36	5	176570189	176570189	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022455	exon5	c.T2183C	p.V728A	.	.	.
N4BP3	23138	broad.mit.edu	36	5	177480095	177480095	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015111	exon3	c.A641C	p.H214P	.	.	.
ZNF354A	6940	broad.mit.edu	36	5	178072180	178072180	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005649	exon5	c.G1305T	p.E435D	.	.	.
ZNF354A	6940	broad.mit.edu	36	5	178072797	178072797	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005649	exon5	c.C688T	p.R230C	.	.	.
ZNF354B	117608	broad.mit.edu	36	5	178242338	178242338	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058230	exon5	c.G279T	p.M93I	.	.	.
ZFP2	80108	broad.mit.edu	36	5	178291656	178291656	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030613	exon5	c.G736T	p.E246X	.	.	.
ZNF354C	30832	broad.mit.edu	36	5	178439369	178439369	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014594	exon5	c.G1330T	p.E444X	.	.	.
MAML1	9794	broad.mit.edu	36	5	179134362	179134362	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014757	exon5	c.C2929T	p.Q977X	.	.	.
OR2Y1	134083	broad.mit.edu	36	5	180099432	180099432	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001657	exon1	c.T233C	p.V78A	.	.	.
CDH18	1016	broad.mit.edu	36	5	19607628	19607628	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004934	exon8	c.G1070A	p.R357H	.	.	.
CDH18	1016	broad.mit.edu	36	5	19782814	19782814	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004934	exon4	c.G517T	p.D173Y	.	.	.
CDH18	1016	broad.mit.edu	36	5	19782897	19782897	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004934	exon4	c.T434G	p.F145C	.	.	.
CDH12	1010	broad.mit.edu	36	5	21878148	21878148	+	Silent	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004061	exon8	c.A693G	p.E231E	.	.	.
CDH10	1008	broad.mit.edu	36	5	24528734	24528734	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006727	exon10	c.T1573G	p.F525V	.	.	.
CDH10	1008	broad.mit.edu	36	5	24545643	24545643	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006727	exon7	c.G1045A	p.E349K	.	.	.
CDH9	1007	broad.mit.edu	36	5	27024050	27024050	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016279	exon2	c.C148T	p.R50C	.	.	.
SDHA	6389	broad.mit.edu	36	5	281384	281384	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004168	exon6	c.G706A	p.A236T	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31460329	31460329	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013235	exon27	c.C3223T	p.R1075C	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31465361	31465361	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013235	exon26	c.G3194C	p.G1065A	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31487411	31487411	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013235	exon20	c.C2668T	p.R890C	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32019430	32019430	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178140	exon2	c.A889G	p.T297A	.	.	.
NPR3	4883	broad.mit.edu	36	5	32748062	32748062	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000908	exon1	c.G423A	p.A141A	.	.	.
TARS	6897	broad.mit.edu	36	5	33502811	33502811	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152295	exon18	c.C1987T	p.R663X	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33563167	33563167	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030955	exon24	c.G4668T	p.K1556N	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33585216	33585216	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030955	exon21	c.G4155T	p.K1385N	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33612994	33612994	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030955	exon19	c.G2894A	p.R965Q	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33719732	33719732	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030955	exon4	c.A820G	p.I274V	.	.	.
RAI14	26064	broad.mit.edu	36	5	34860118	34860118	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145522	exon14	c.C2327T	p.S776L	.	.	.
TTC23L	153657	broad.mit.edu	36	5	34902815	34902815	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144725	exon7	c.G724A	p.D242N	.	.	.
PRLR	5618	broad.mit.edu	36	5	35101270	35101270	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000949	exon10	c.A1547G	p.N516S	.	.	.
SPEF2	79925	broad.mit.edu	36	5	35685247	35685247	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024867	exon6	c.G754A	p.E252K	.	.	.
SPEF2	79925	broad.mit.edu	36	5	35812134	35812134	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024867	exon29	c.G4097A	p.R1366Q	.	.	.
IL7R	3575	broad.mit.edu	36	5	35903180	35903180	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002185	exon3	c.G237T	p.E79D	.	.	.
CAPSL	133690	broad.mit.edu	36	5	35946370	35946370	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144647	exon3	c.G170A	p.R57Q	.	.	.
RANBP3L	202151	broad.mit.edu	36	5	36289574	36289574	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145000	exon12	c.A1099C	p.N367H	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37099866	37099866	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015384	exon46	c.C8078T	p.S2693L	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37204892	37204892	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023073	exon34	c.G6991A	p.D2331N	.	.	.
LIFR	3977	broad.mit.edu	36	5	38526058	38526058	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127671	exon15	c.G2158T	p.E720X	.	.	.
LIFR	3977	broad.mit.edu	36	5	38541884	38541884	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127671	exon9	c.G1171A	p.E391K	.	.	.
LIFR	3977	broad.mit.edu	36	5	38546332	38546332	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127671	exon7	c.T982G	p.F328V	.	.	.
OSMR	9180	broad.mit.edu	36	5	38968733	38968733	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003999	exon18	c.G2370T	p.E790D	.	.	.
RICTOR	253260	broad.mit.edu	36	5	39017757	39017757	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152756	exon8	c.G722A	p.R241Q	.	.	.
DAB2	1601	broad.mit.edu	36	5	39419011	39419011	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001343	exon10	c.G807A	p.T269T	.	.	.
C7	730	broad.mit.edu	36	5	41000615	41000615	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000587	exon14	c.T1765C	p.F589L	.	.	.
HEATR7B2	133558	broad.mit.edu	36	5	41051256	41051256	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173489	exon29	c.C2966A	p.S989Y	.	.	.
C6	729	broad.mit.edu	36	5	41212521	41212521	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000065	exon8	c.G981A	p.T327T	.	.	.
C6	729	broad.mit.edu	36	5	41231688	41231688	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000065	exon5	c.T550C	p.Y184H	.	.	.
OXCT1	5019	broad.mit.edu	36	5	41798026	41798026	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000436	exon14	c.G1282T	p.D428Y	.	.	.
C5orf34	375444	broad.mit.edu	36	5	43544498	43544498	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198566	exon3	c.C223T	p.R75X	.	.	.
EMB	133418	broad.mit.edu	36	5	49731462	49731462	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198449	exon8	c.G954A	p.R318R	.	.	.
EMB	133418	broad.mit.edu	36	5	49737320	49737320	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198449	exon5	c.T596C	p.V199A	.	.	.
PARP8	79668	broad.mit.edu	36	5	50152870	50152870	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178055	exon17	c.G1735A	p.E579K	.	.	.
EXOC3	11336	broad.mit.edu	36	5	507128	507128	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007277	exon4	c.C1008T	p.I336I	.	.	.
ADAMTS16	170690	broad.mit.edu	36	5	5239219	5239219	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139056	exon5	c.C818A	p.S273Y	.	.	.
FST	10468	broad.mit.edu	36	5	52815854	52815854	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013409	exon4	c.G695A	p.G232E	.	.	.
GZMA	3001	broad.mit.edu	36	5	54437152	54437152	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006144	exon2	c.C164A	p.A55D	.	.	.
SKIV2L2	23517	broad.mit.edu	36	5	54674978	54674978	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015360	exon8	c.C844A	p.L282I	.	.	.
SKIV2L2	23517	broad.mit.edu	36	5	54709935	54709935	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015360	exon17	c.T1847C	p.V616A	.	.	.
GPBP1	65056	broad.mit.edu	36	5	56582606	56582606	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022913	exon10	c.C1041T	p.F347F	.	.	.
IPO11	51194	broad.mit.edu	36	5	61808313	61808313	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134779	exon9	c.G924T	p.K308N	.	.	.
HTR1A	3350	broad.mit.edu	36	5	63292061	63292061	+	Silent	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000524	exon1	c.C1242A	p.I414I	.	.	.
RNF180	285671	broad.mit.edu	36	5	63545478	63545478	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178532	exon4	c.A569G	p.Y190C	.	.	.
RGS7BP	401190	broad.mit.edu	36	5	63907396	63907396	+	Silent	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029875	exon3	c.T372G	p.L124L	.	.	.
RGS7BP	401190	broad.mit.edu	36	5	63907481	63907481	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029875	exon3	c.C457T	p.R153X	.	.	.
CWC27	10283	broad.mit.edu	36	5	64115449	64115449	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005869	exon4	c.C283T	p.R95W	.	.	.
CWC27	10283	broad.mit.edu	36	5	64303377	64303377	+	Silent	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005869	exon12	c.A1134G	p.G378G	.	.	.
CENPK	64105	broad.mit.edu	36	5	64860780	64860780	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022145	exon7	c.C291T	p.F97F	.	.	.
SGTB	54557	broad.mit.edu	36	5	65001889	65001889	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019072	exon11	c.G855A	p.E285E	.	.	.
SGTB	54557	broad.mit.edu	36	5	65052337	65052337	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019072	exon2	c.A54C	p.Q18H	.	.	.
ERBB2IP	55914	broad.mit.edu	36	5	65386507	65386507	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018695	exon21	c.G3605A	p.R1202Q	.	.	.
MAST4	375449	broad.mit.edu	36	5	66463462	66463462	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015183	exon15	c.T1453G	p.F485V	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71526994	71526994	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005909	exon5	c.A2056C	p.K686Q	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71528415	71528415	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005909	exon5	c.C3477T	p.F1159F	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71530710	71530710	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005909	exon5	c.G5772A	p.E1924E	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71531814	71531814	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005909	exon5	c.G6876T	p.K2292N	.	.	.
UTP15	84135	broad.mit.edu	36	5	72900047	72900047	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032175	exon4	c.C230A	p.S77Y	.	.	.
GCNT4	51301	broad.mit.edu	36	5	74361060	74361060	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016591	exon1	c.T559G	p.F187V	.	.	.
COL4A3BP	10087	broad.mit.edu	36	5	74790740	74790740	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130105	exon4	c.G638A	p.R213Q	.	.	.
IQGAP2	10788	broad.mit.edu	36	5	75932477	75932477	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006633	exon11	c.G1156A	p.D386N	.	.	.
IQGAP2	10788	broad.mit.edu	36	5	75984355	75984355	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006633	exon18	c.C2119T	p.R707W	.	.	.
WDR41	55255	broad.mit.edu	36	5	76821065	76821065	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018268	exon2	c.G140A	p.R47Q	.	.	.
LHFPL2	10184	broad.mit.edu	36	5	77820540	77820540	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005779	exon5	c.C623G	p.A208G	.	.	.
PAPD4	167153	broad.mit.edu	36	5	78972485	78972485	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114394	exon5	c.T521C	p.L174S	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79061512	79061512	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153610	exon2	c.T1168C	p.F390L	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79063775	79063775	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153610	exon2	c.C3431A	p.S1144X	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79120552	79120552	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153610	exon10	c.C11558A	p.S3853Y	.	.	.
THBS4	7060	broad.mit.edu	36	5	79391060	79391060	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003248	exon6	c.C774T	p.C258C	.	.	.
ZFYVE16	9765	broad.mit.edu	36	5	79765785	79765785	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105251	exon3	c.G63T	p.Q21H	.	.	.
ZFYVE16	9765	broad.mit.edu	36	5	79788043	79788043	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105251	exon13	c.G3698A	p.R1233Q	.	.	.
RASGRF2	5924	broad.mit.edu	36	5	80418423	80418423	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006909	exon9	c.G1285T	p.E429X	.	.	.
RASGRF2	5924	broad.mit.edu	36	5	80539969	80539969	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006909	exon22	c.G3112A	p.E1038K	.	.	.
ACOT12	134526	broad.mit.edu	36	5	80677503	80677503	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130767	exon7	c.C730T	p.R244C	.	.	.
SSBP2	23635	broad.mit.edu	36	5	80981901	80981901	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012446	exon2	c.G76A	p.V26I	.	.	.
VCAN	1462	broad.mit.edu	36	5	82871431	82871431	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164097	exon7	c.C3892A	p.P1298T	.	.	.
VCAN	1462	broad.mit.edu	36	5	82873199	82873199	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164097	exon7	c.C5660T	p.A1887V	.	.	.
HAPLN1	1404	broad.mit.edu	36	5	82984054	82984054	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001884	exon3	c.C446T	p.T149I	.	.	.
GPR98	84059	broad.mit.edu	36	5	89979272	89979272	+	De_novo_Start_OutOfFrame	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032119	exon17	c.T3224G	p.F1075C	.	.	.
GPR98	84059	broad.mit.edu	36	5	90114889	90114889	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032119	exon66	c.A13424G	p.D4475G	.	.	.
GPR98	84059	broad.mit.edu	36	5	90317064	90317064	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032119	exon85	c.T18121C	p.S6041P	.	.	.
C5orf36	285600	broad.mit.edu	36	5	93882174	93882174	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145678	exon5	c.C505T	p.R169X	.	.	.
MCTP1	79772	broad.mit.edu	36	5	94068979	94068979	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002796	exon23	c.G2315A	p.R772K	.	.	.
MCTP1	79772	broad.mit.edu	36	5	94076240	94076240	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002796	exon20	c.G2055T	p.K685N	.	.	.
FAM81B	153643	broad.mit.edu	36	5	94809908	94809908	+	Silent	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152548	exon9	c.G1209A	p.Q403Q	.	.	.
TTC37	9652	broad.mit.edu	36	5	94902832	94902832	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014639	exon7	c.A335C	p.K112T	.	.	.
RIOK2	55781	broad.mit.edu	36	5	96539294	96539294	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018343	exon3	c.C220T	p.R74W	.	.	.
FAM183B	340286	broad.mit.edu	36	7	38692004	38692004	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
TCL6	27004	broad.mit.edu	36	14	95207510	95207510	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
ZNF826P	664701	broad.mit.edu	36	19	20369655	20369655	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
PRR19	284338	broad.mit.edu	36	19	47506262	47506262	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
FGF17	8822	broad.mit.edu	36	8	21959565	21959565	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
SPATA1	64173	broad.mit.edu	36	1	84754584	84754584	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
LPAL2	80350	broad.mit.edu	36	6	160833946	160833946	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
ZNF271	10778	broad.mit.edu	36	18	31140663	31140663	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
CRYBG3	131544	broad.mit.edu	36	3	99078915	99078915	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
CRYBG3	131544	broad.mit.edu	36	3	99117225	99117225	+	Silent	SNP	C	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
PLEKHA9	51054	broad.mit.edu	36	12	43853910	43853910	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
PLEKHA9	51054	broad.mit.edu	36	12	43854358	43854358	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
MIR216A	406998	broad.mit.edu	36	2	56069631	56069631	+	RNA	SNP	G	T	T	novel		TCGA-AA-A00N-01	TCGA-AA-A00N-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
