Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
YTHDC2	64848	hgsc.bcm.edu	36	5	112955741	112955742	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022828	exon28	c.4179_4180insT	p.D1393fs	.	.	.
PKD1L1	168507	hgsc.bcm.edu	36	7	47827293	47827293	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138295	exon46	c.A6871G	p.I2291V	.	.	.
DLX5	1749	hgsc.bcm.edu	36	7	96491548	96491548	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005221	exon1	c.C324T	p.Y108Y	.	.	.
CLMN	79789	hgsc.bcm.edu	36	14	94739128	94739128	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_024734	exon9	c.G2311A	p.E771K	.	.	.
SEZ6L	23544	hgsc.bcm.edu	36	22	25018743	25018743	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001184776	exon2	c.C466A	p.L156I	.	.	.
PRODH2	58510	hgsc.bcm.edu	36	19	40989821	40989821	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021232	exon6	c.C868T	p.L290F	.	.	.
PIK3C2B	5287	hgsc.bcm.edu	36	1	202685655	202685655	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002646	exon14	c.G2180A	p.R727Q	.	.	.
DDOST	1650	hgsc.bcm.edu	36	1	20851537	20851537	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005216	exon11	c.C1293T	p.S431S	.	.	.
PIK3CD	5293	hgsc.bcm.edu	36	1	9699720	9699720	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005026	exon7	c.G897A	p.P299P	.	.	.
TRPC6	7225	hgsc.bcm.edu	36	11	100859061	100859061	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004621	exon5	c.G1339A	p.A447T	.	.	.
KIF18A	81930	hgsc.bcm.edu	36	11	28014507	28014507	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_031217	exon14	c.T2229G	p.N743K	.	.	.
WNT11	7481	hgsc.bcm.edu	36	11	75575778	75575778	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004626	exon5	c.G1044A	p.V348V	.	.	.
SLC22A9	114571	hgsc.bcm.edu	36	11	62906247	62906247	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_080866	exon6	c.995delA	p.Q332fs	.	.	.
MAK	4117	hgsc.bcm.edu	36	6	10899964	10899964	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005906	exon9	c.G1246A	p.G416R	.	.	.
SLC2A12	154091	hgsc.bcm.edu	36	6	134392191	134392191	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145176	exon2	c.C465T	p.I155I	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152527122	152527122	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015293	exon46	c.G7231A	p.V2411M	.	.	.
NRM	11270	hgsc.bcm.edu	36	6	30765067	30765067	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007243	exon3	c.G472A	p.V158I	.	.	.
OGFRL1	79627	hgsc.bcm.edu	36	6	72062949	72062949	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024576	exon5	c.C510T	p.N170N	.	.	.
PRPF8	10594	hgsc.bcm.edu	36	17	1526005	1526005	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006445	exon18	c.G2646A	p.K882K	.	.	.
TRIM37	4591	hgsc.bcm.edu	36	17	54464126	54464126	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001005207	exon18	c.C1861T	p.H621Y	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518937	7518937	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon6	c.C637T	p.R213X	TP53,central_nervous_system,brain,Substitution - Missense,+1	.	.
C17orf28	283987	hgsc.bcm.edu	36	17	70462025	70462025	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030630	exon14	c.G1667A	p.R556H	.	.	.
KRTAP15-1	254950	hgsc.bcm.edu	36	21	30734645	30734645	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181623	exon1	c.G129T	p.L43L	.	.	.
ZNF423	23090	hgsc.bcm.edu	36	16	48227754	48227754	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015069	exon5	c.G2810A	p.R937Q	.	.	.
TRA2B	6434	hgsc.bcm.edu	36	3	187118204	187118204	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004593	exon9	c.G860A	p.R287H	.	.	.
TMPPE	643853	hgsc.bcm.edu	36	3	33110623	33110623	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039770	exon2	c.C69T	p.S23S	.	.	.
SFRS8	6433	hgsc.bcm.edu	36	12	130764620	130764620	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004592	exon2	c.T270C	p.Y90Y	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35T	p.G12V	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
IRAK4	51135	hgsc.bcm.edu	36	12	42462531	42462531	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_016123	exon9	c.C1096A	p.P366T	.	.	.
TMEM117	84216	hgsc.bcm.edu	36	12	43068650	43068650	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032256	exon8	c.G1473T	p.Q491H	.	.	.
DDIT3	1649	hgsc.bcm.edu	36	12	56197024	56197024	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001195055	exon4	c.T414C	p.A138A	DDIT3,large_intestine,colon,Substitution - Missense,-1	.	.
CHD4	1108	hgsc.bcm.edu	36	12	6574832	6574832	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001273	exon14	c.C2050T	p.R684X	.	.	.
WNK1	65125	hgsc.bcm.edu	36	12	840559	840559	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184985	exon7	c.A1740G	p.E580E	.	.	.
IMP3	55272	hgsc.bcm.edu	36	15	73719044	73719044	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018285	exon1	c.A521G	p.N174S	.	.	.
TLL1	7092	hgsc.bcm.edu	36	4	167215481	167215481	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012464	exon17	c.C2190A	p.D730E	.	.	.
EVC2	132884	hgsc.bcm.edu	36	4	5675369	5675369	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001166136	exon14	c.G2057A	p.R686H	.	.	.
FBXW7	55294	hgsc.bcm.edu	36	4	153470306	153470308	+	In_Frame_Del	DEL	TGT	TGT	-	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	TGT	TGT	TGT	-	TGT	TGT	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018315	exon7	c.962_964del	p.321_322del	.	.	.
KLHL4	56062	hgsc.bcm.edu	36	X	86774021	86774021	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_057162	exon7	c.G1480A	p.E494K	.	.	.
HOXD4	3233	hgsc.bcm.edu	36	2	176725906	176725906	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014621	exon2	c.C758T	p.T253M	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237918324	237918324	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_057166	exon32	c.C5352T	p.Y1784Y	.	.	.
GLI2	2736	hgsc.bcm.edu	36	2	121442781	121442781	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005270	exon5	c.G665A	p.R222Q	.	.	.
TNC	3371	hgsc.bcm.edu	36	9	116889303	116889303	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002160	exon3	c.C528T	p.C176C	.	.	.
SGMS1	259230	hgsc.bcm.edu	36	10	51773409	51773409	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_147156	exon7	c.G472A	p.E158K	.	.	.
ITIH5	80760	hgsc.bcm.edu	36	10	7667989	7667989	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030569	exon8	c.G989A	p.R330H	.	.	.
MYOT	9499	hgsc.bcm.edu	36	5	137241109	137241109	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006790	exon4	c.G533A	p.R178H	.	.	.
APC	324	hgsc.bcm.edu	36	5	112202900	112202901	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AG-3594-01	TCGA-AG-3594-01	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.3656_3657del	p.1219_1219del	.	.	.
