Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
WNT16	51384	hgsc.bcm.edu	36	7	120759114	120759115	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016087	exon3	c.463_464insG	p.W155fs	.	.	.
GAL3ST4	79690	hgsc.bcm.edu	36	7	99596251	99596252	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024637	exon4	c.697_698insC	p.R233fs	.	.	.
TNFAIP2	7127	hgsc.bcm.edu	36	14	102671341	102671342	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006291	exon11	c.1856_1857insG	p.K619fs	.	.	.
SNAPC1	6617	hgsc.bcm.edu	36	14	61312663	61312664	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003082	exon5	c.632_633insT	p.D211fs	.	.	.
UBR5	51366	hgsc.bcm.edu	36	8	103427672	103427673	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015902	exon7	c.704_705insG	p.D235fs	.	.	.
HIF3A	64344	hgsc.bcm.edu	36	19	51504363	51504364	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152795	exon6	c.677_678insC	p.I226fs	.	.	.
GTF2F1	2962	hgsc.bcm.edu	36	19	6332750	6332751	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002096	exon7	c.794_795insG	p.D265fs	.	.	.
UBE4B	10277	hgsc.bcm.edu	36	1	10134133	10134134	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006048	exon20	c.2466_2467insT	p.K822fs	.	.	.
GJA5	2702	hgsc.bcm.edu	36	1	145697831	145697832	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005266	exon2	c.140_141insG	p.D47fs	.	.	.
ADAMTS4	9507	hgsc.bcm.edu	36	1	159434569	159434570	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005099	exon1	c.473_474insG	p.A158fs	.	.	.
ANGEL2	90806	hgsc.bcm.edu	36	1	211253366	211253367	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144567	exon2	c.77_78insC	p.H26fs	.	.	.
CENPF	1063	hgsc.bcm.edu	36	1	212897275	212897276	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016343	exon18	c.8862_8863insA	p.S2954fs	.	.	.
IL28RA	163702	hgsc.bcm.edu	36	1	24356676	24356677	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173064	exon7	c.1007_1008insG	p.V336fs	.	.	.
ARID1A	8289	hgsc.bcm.edu	36	1	26961255	26961256	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139135	exon7	c.2277_2278insC	p.M759fs	.	.	.
HIST1H3C	8352	hgsc.bcm.edu	36	6	26154013	26154014	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003531	exon1	c.396_397insG	p.R132fs	.	.	.
SLC44A4	80736	hgsc.bcm.edu	36	6	31950240	31950241	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001178044	exon6	c.379_380insC	p.S127fs	.	.	.
AP2B1	163	hgsc.bcm.edu	36	17	31061407	31061408	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001282	exon19	c.2539_2540insA	p.E847fs	.	.	.
PPP1R1B	84152	hgsc.bcm.edu	36	17	35039770	35039771	+	Frame_Shift_Ins	INS	-	-	CCTT	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032192	exon4	c.185_186insCCTT	p.H62fs	.	.	.
ZPBP2	124626	hgsc.bcm.edu	36	17	35281365	35281366	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198844	exon3	c.301_302insA	p.E101fs	.	.	.
DHX8	1659	hgsc.bcm.edu	36	17	38956607	38956608	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004941	exon23	c.3529_3530insC	p.A1177fs	.	.	.
ABCA10	10349	hgsc.bcm.edu	36	17	64722504	64722505	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080282	exon10	c.942_943insT	p.F314fs	.	.	.
BTBD11	121551	hgsc.bcm.edu	36	12	106536170	106536171	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001018072	exon10	c.2337_2338insC	p.P779fs	.	.	.
LRP1	4035	hgsc.bcm.edu	36	12	55846146	55846147	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002332	exon17	c.2684_2685insC	p.C895fs	.	.	.
DMD	1756	hgsc.bcm.edu	36	X	31857761	31857762	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004010	exon47	c.6416_6417insA	p.L2139fs	.	.	.
MTTP	4547	hgsc.bcm.edu	36	4	100731875	100731876	+	In_Frame_Ins	INS	-	-	ATAGAA	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000253	exon7	c.663_664insATAGAA	p.K221delinsKIE	.	.	.
ANK2	287	hgsc.bcm.edu	36	4	114498482	114498483	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001148	exon38	c.9259_9260insC	p.T3087fs	.	.	.
PCDH10	57575	hgsc.bcm.edu	36	4	134291098	134291099	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032961	exon1	c.353_354insC	p.N118fs	.	.	.
PET112L	5188	hgsc.bcm.edu	36	4	152829300	152829301	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004564	exon10	c.1263_1264insA	p.K421fs	.	.	.
CPZ	8532	hgsc.bcm.edu	36	4	8664744	8664745	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003652	exon7	c.1285_1286insG	p.R429fs	.	.	.
KCNH7	90134	hgsc.bcm.edu	36	2	163082519	163082520	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173162	exon4	c.859_860insC	p.K287fs	.	.	.
CYBRD1	79901	hgsc.bcm.edu	36	2	172118246	172118247	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024843	exon3	c.547_548insT	p.I183fs	.	.	.
DGKD	8527	hgsc.bcm.edu	36	2	234025375	234025376	+	Frame_Shift_Ins	INS	-	-	TACC	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152879	exon18	c.2194_2195insTACC	p.L732fs	.	.	.
MTERFD2	130916	hgsc.bcm.edu	36	2	241684388	241684389	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182501	exon4	c.844_845insG	p.Q282fs	.	.	.
MAPRE3	22924	hgsc.bcm.edu	36	2	27102020	27102021	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012326	exon5	c.535_536insC	p.A179fs	.	.	.
RASA3	22821	hgsc.bcm.edu	36	13	113811480	113811481	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007368	exon6	c.475_476insC	p.I159fs	.	.	.
COL17A1	1308	hgsc.bcm.edu	36	10	105802833	105802834	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000494	exon23	c.1885_1886insC	p.M629fs	.	.	.
TMEM20	159371	hgsc.bcm.edu	36	10	95648406	95648407	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153226	exon2	c.264_265insA	p.V88fs	.	.	.
GLRA1	2741	hgsc.bcm.edu	36	5	151216091	151216092	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000171	exon5	c.523_524insC	p.M175fs	.	.	.
GCNT4	51301	hgsc.bcm.edu	36	5	74360738	74360739	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016591	exon1	c.881_882insC	p.H294fs	.	.	.
SRRT	51593	hgsc.bcm.edu	36	7	100320065	100320065	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128852	exon7	c.C898T	p.R300C	.	.	.
PIK3CG	5294	hgsc.bcm.edu	36	7	106296792	106296792	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002649	exon2	c.C1550T	p.S517F	.	.	.
C7orf58	79974	hgsc.bcm.edu	36	7	120568231	120568231	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024913	exon15	c.T1814C	p.V605A	.	.	.
LRRC4	64101	hgsc.bcm.edu	36	7	127457125	127457125	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022143	exon2	c.G805C	p.V269L	.	.	.
LRRC4	64101	hgsc.bcm.edu	36	7	127457351	127457351	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022143	exon2	c.G579C	p.E193D	.	.	.
AHCYL2	23382	hgsc.bcm.edu	36	7	128849972	128849972	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015328	exon13	c.A1517G	p.H506R	.	.	.
FAM40B	57464	hgsc.bcm.edu	36	7	128910087	128910087	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020704	exon20	c.C2218T	p.R740C	.	.	.
PLXNA4	91584	hgsc.bcm.edu	36	7	131476072	131476072	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020911	exon30	c.C5264T	p.P1755L	.	.	.
PLXNA4	91584	hgsc.bcm.edu	36	7	131842996	131842996	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181775	exon3	c.G997A	p.D333N	.	.	.
PLXNA4	91584	hgsc.bcm.edu	36	7	131843698	131843698	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181775	exon3	c.C295T	p.R99C	.	.	.
PLXNA4	91584	hgsc.bcm.edu	36	7	131843851	131843851	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181775	exon3	c.G142A	p.A48T	.	.	.
DGKI	9162	hgsc.bcm.edu	36	7	136980789	136980789	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004717	exon6	c.G773A	p.R258Q	.	.	.
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0	.	.
EZH2	2146	hgsc.bcm.edu	36	7	148138385	148138385	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152998	exon16	c.T1870A	p.C624S	.	.	.
PRKAG2	51422	hgsc.bcm.edu	36	7	151109290	151109290	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016203	exon3	c.G347A	p.R116H	.	.	.
HOXA1	3198	hgsc.bcm.edu	36	7	27100895	27100895	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005522	exon2	c.C697T	p.R233C	.	.	.
HOXA3	3200	hgsc.bcm.edu	36	7	27114735	27114735	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030661	exon3	c.C656T	p.P219L	.	.	.
AMPH	273	hgsc.bcm.edu	36	7	38637431	38637431	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139316	exon1	c.C46T	p.R16X	.	.	.
INHBA	3624	hgsc.bcm.edu	36	7	41706135	41706135	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002192	exon2	c.G363A	p.S121S	.	.	.
GLI3	2737	hgsc.bcm.edu	36	7	42046215	42046215	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000168	exon7	c.T975C	p.R325R	.	.	.
PKD1L1	168507	hgsc.bcm.edu	36	7	47809452	47809452	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138295	exon53	c.C7843T	p.R2615W	.	.	.
PKD1L1	168507	hgsc.bcm.edu	36	7	47935355	47935355	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138295	exon7	c.C1031T	p.A344V	.	.	.
MLXIPL	51085	hgsc.bcm.edu	36	7	72658202	72658202	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032952	exon6	c.C794T	p.S265L	.	.	.
CLIP2	7461	hgsc.bcm.edu	36	7	73449396	73449396	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003388	exon14	c.C2777A	p.P926Q	.	.	.
GTF2I	2969	hgsc.bcm.edu	36	7	73763366	73763366	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033000	exon9	c.T753C	p.Y251Y	.	.	.
HIP1	3092	hgsc.bcm.edu	36	7	75035490	75035490	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005338	exon9	c.C752A	p.P251Q	.	.	.
GRM3	2913	hgsc.bcm.edu	36	7	86306628	86306628	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000840	exon4	c.G1862T	p.G621V	.	.	.
ZNF804B	219578	hgsc.bcm.edu	36	7	88801834	88801834	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181646	exon4	c.G1602A	p.P534P	.	.	.
PFTK1	5218	hgsc.bcm.edu	36	7	90579912	90579912	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012395	exon12	c.G1220A	p.R407Q	.	.	.
AKAP9	10142	hgsc.bcm.edu	36	7	91564956	91564956	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_147185	exon42	c.G10495A	p.G3499S	.	.	.
BAIAP2L1	55971	hgsc.bcm.edu	36	7	97822330	97822330	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018842	exon3	c.C174T	p.I58I	.	.	.
TRRAP	8295	hgsc.bcm.edu	36	7	98440739	98440739	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003496	exon67	c.C10456T	p.R3486W	.	.	.
TRRAP	8295	hgsc.bcm.edu	36	7	98446678	98446678	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003496	exon69	c.C10877T	p.A3626V	.	.	.
LRRC4	64101	hgsc.bcm.edu	36	7	127457133	127457134	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	GC	GC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022143	exon2	c.796_797del	p.266_266del	.	.	.
MKKS	8195	hgsc.bcm.edu	36	20	10341186	10341186	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018848	exon3	c.A977C	p.K326T	.	.	.
ZNF133	7692	hgsc.bcm.edu	36	20	18243980	18243980	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003434	exon7	c.C482T	p.T161I	.	.	.
ABHD12	26090	hgsc.bcm.edu	36	20	25248888	25248888	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042472	exon4	c.C489A	p.A163A	.	.	.
KIF3B	9371	hgsc.bcm.edu	36	20	30361574	30361574	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004798	exon2	c.T333C	p.G111G	.	.	.
C20orf4	25980	hgsc.bcm.edu	36	20	34291785	34291785	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015511	exon2	c.G581A	p.R194Q	.	.	.
SAMHD1	25939	hgsc.bcm.edu	36	20	34989018	34989018	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015474	exon6	c.G677A	p.R226H	.	.	.
RBL1	5933	hgsc.bcm.edu	36	20	35129812	35129812	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002895	exon3	c.G482A	p.R161Q	.	.	.
KIAA1755	85449	hgsc.bcm.edu	36	20	36303405	36303405	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001029864	exon3	c.T542A	p.I181K	.	.	.
LBP	3929	hgsc.bcm.edu	36	20	36416137	36416137	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004139	exon4	c.C408T	p.I136I	.	.	.
EYA2	2139	hgsc.bcm.edu	36	20	45234916	45234916	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172110	exon12	c.G1192A	p.V398I	.	.	.
ZMYND8	23613	hgsc.bcm.edu	36	20	45301240	45301240	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012408	exon15	c.G2334A	p.P778P	.	.	.
PRNP	5621	hgsc.bcm.edu	36	20	4628469	4628469	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_183079	exon2	c.C603T	p.T201T	.	.	.
PREX1	57580	hgsc.bcm.edu	36	20	46701404	46701404	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020820	exon22	c.C2592T	p.G864G	.	.	.
DDX27	55661	hgsc.bcm.edu	36	20	47275107	47275107	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017895	exon6	c.G657A	p.S219S	.	.	.
MOCS3	27304	hgsc.bcm.edu	36	20	49009934	49009934	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014484	exon1	c.C1148T	p.A383V	.	.	.
STX16	8675	hgsc.bcm.edu	36	20	56676027	56676027	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003763	exon2	c.C157T	p.P53S	.	.	.
C20orf196	149840	hgsc.bcm.edu	36	20	5701632	5701632	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152504	exon2	c.G121C	p.E41Q	.	.	.
MYT1	4661	hgsc.bcm.edu	36	20	62313920	62313920	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004535	exon9	c.G1502A	p.R501H	.	.	.
MYT1	4661	hgsc.bcm.edu	36	20	62342196	62342196	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004535	exon23	c.A3317T	p.K1106M	.	.	.
PAK7	57144	hgsc.bcm.edu	36	20	9471320	9471320	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_177990	exon9	c.C1917T	p.G639G	.	.	.
PMEPA1	56937	hgsc.bcm.edu	36	20	55660583	55660584	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	TG	TG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199169	exon4	c.690_691del	p.230_231del	.	.	.
DYNC1H1	1778	hgsc.bcm.edu	36	14	101564129	101564129	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001376	exon48	c.G9366A	p.V3122V	.	.	.
FAM12A	10876	hgsc.bcm.edu	36	14	20285842	20285842	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006683	exon2	c.G263A	p.R88Q	.	.	.
SALL2	6297	hgsc.bcm.edu	36	14	21062277	21062277	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005407	exon2	c.G1425A	p.K475K	.	.	.
SLC7A8	23428	hgsc.bcm.edu	36	14	22682242	22682242	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012244	exon4	c.T520C	p.W174R	.	.	.
CTSG	1511	hgsc.bcm.edu	36	14	24113773	24113773	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001911	exon3	c.G287A	p.R96H	.	.	.
LRFN5	145581	hgsc.bcm.edu	36	14	41430884	41430884	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152447	exon4	c.G2067A	p.G689G	.	.	.
NIN	51199	hgsc.bcm.edu	36	14	50358385	50358385	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182944	exon3	c.C140A	p.P47Q	.	.	.
BMP4	652	hgsc.bcm.edu	36	14	53486505	53486505	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130851	exon4	c.C1222T	p.R408C	.	.	.
DACT1	51339	hgsc.bcm.edu	36	14	58182645	58182645	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079520	exon4	c.C1440T	p.G480G	.	.	.
MTHFD1	4522	hgsc.bcm.edu	36	14	63976720	63976720	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005956	exon18	c.G1798A	p.V600I	.	.	.
SPTB	6710	hgsc.bcm.edu	36	14	64322055	64322055	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024858	exon17	c.C3808T	p.L1270L	.	.	.
GPHN	10243	hgsc.bcm.edu	36	14	66459187	66459187	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024218	exon7	c.C508T	p.R170C	.	.	.
VTI1B	10490	hgsc.bcm.edu	36	14	67198947	67198947	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006370	exon2	c.G174A	p.T58T	.	.	.
SPTLC2	9517	hgsc.bcm.edu	36	14	77112969	77112969	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004863	exon4	c.C525A	p.S175S	.	.	.
FLRT2	23768	hgsc.bcm.edu	36	14	85158798	85158798	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013231	exon2	c.C1187T	p.T396M	.	.	.
FLRT2	23768	hgsc.bcm.edu	36	14	85159002	85159002	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013231	exon2	c.G1391A	p.G464D	.	.	.
FLRT2	23768	hgsc.bcm.edu	36	14	85159198	85159198	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013231	exon2	c.T1587C	p.H529H	.	.	.
KCNK10	54207	hgsc.bcm.edu	36	14	87799357	87799357	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138317	exon2	c.C344T	p.A115V	.	.	.
LGMN	5641	hgsc.bcm.edu	36	14	92249926	92249926	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008530	exon8	c.C538T	p.R180X	.	.	.
IFI27L2	83982	hgsc.bcm.edu	36	14	93664628	93664628	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032036	exon3	c.C175A	p.L59M	.	.	.
SERPINA10	51156	hgsc.bcm.edu	36	14	93824406	93824406	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016186	exon3	c.T962C	p.V321A	.	.	.
EML1	2009	hgsc.bcm.edu	36	14	99476191	99476191	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008707	exon23	c.C2494T	p.R832C	.	.	.
BID	637	hgsc.bcm.edu	36	22	16602195	16602195	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001196	exon4	c.G283A	p.D95N	.	.	.
DGCR14	8220	hgsc.bcm.edu	36	22	17504887	17504887	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022719	exon8	c.T984C	p.V328V	.	.	.
PI4KA	5297	hgsc.bcm.edu	36	22	19482878	19482878	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_058004	exon17	c.G1928A	p.G643D	.	.	.
AIFM3	150209	hgsc.bcm.edu	36	22	19662229	19662229	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146288	exon16	c.T1430C	p.F477S	.	.	.
LZTR1	8216	hgsc.bcm.edu	36	22	19680078	19680078	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006767	exon17	c.G1986A	p.A662A	.	.	.
CYTSA	23384	hgsc.bcm.edu	36	22	23048570	23048570	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145468	exon4	c.G1622A	p.S541N	.	.	.
CRYBB1	1414	hgsc.bcm.edu	36	22	25342199	25342199	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001887	exon2	c.G85A	p.A29T	.	.	.
SLC35E4	339665	hgsc.bcm.edu	36	22	29372901	29372901	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001479	exon2	c.C936T	p.Y312Y	.	.	.
PISD	23761	hgsc.bcm.edu	36	22	30347782	30347782	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014338	exon5	c.G309A	p.R103R	.	.	.
MYH9	4627	hgsc.bcm.edu	36	22	35031929	35031929	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002473	exon17	c.C2152T	p.R718W	.	.	.
APOBEC3H	164668	hgsc.bcm.edu	36	22	37827975	37827975	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166003	exon4	c.A525G	p.R175R	.	.	.
ADSL	158	hgsc.bcm.edu	36	22	39090915	39090915	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000026	exon12	c.G1277A	p.R426H	.	.	.
SCUBE1	80274	hgsc.bcm.edu	36	22	41984265	41984265	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173050	exon6	c.G631A	p.G211R	.	.	.
TBC1D22A	25771	hgsc.bcm.edu	36	22	45947887	45947887	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014346	exon13	c.G1508A	p.R503H	.	.	.
DDX17	10521	hgsc.bcm.edu	36	22	37211898	37211900	+	In_Frame_Del	DEL	AGG	AGG	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	AGG	AGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001098504	exon13	c.2182_2184del	p.728_728del	.	.	.
PODNL1	79883	hgsc.bcm.edu	36	19	13908235	13908235	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024825	exon3	c.C285T	p.S95S	.	.	.
EMR2	30817	hgsc.bcm.edu	36	19	14715578	14715578	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152920	exon18	c.G2022A	p.A674A	.	.	.
AP1M1	8907	hgsc.bcm.edu	36	19	16205357	16205357	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130524	exon11	c.C1137T	p.A379A	.	.	.
NWD1	284434	hgsc.bcm.edu	36	19	16721978	16721978	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001007525	exon6	c.G1525A	p.A509T	.	.	.
SLC7A9	11136	hgsc.bcm.edu	36	19	38026639	38026639	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126335	exon10	c.G1036A	p.V346I	.	.	.
RHPN2	85415	hgsc.bcm.edu	36	19	38194531	38194531	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033103	exon6	c.C487T	p.R163W	.	.	.
ZNF565	147929	hgsc.bcm.edu	36	19	41365882	41365882	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152477	exon5	c.G826A	p.E276K	.	.	.
ZNF569	148266	hgsc.bcm.edu	36	19	42597053	42597053	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152484	exon6	c.A347C	p.Q116P	.	.	.
FSD1	79187	hgsc.bcm.edu	36	19	4274165	4274165	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024333	exon11	c.G1222A	p.A408T	.	.	.
RYR1	6261	hgsc.bcm.edu	36	19	43648860	43648860	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042723	exon24	c.C3160T	p.P1054S	.	.	.
CAPN12	147968	hgsc.bcm.edu	36	19	43924948	43924948	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144691	exon3	c.G368A	p.R123Q	.	.	.
SERTAD3	29946	hgsc.bcm.edu	36	19	45639725	45639725	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203344	exon2	c.C103T	p.R35C	.	.	.
RAB4B	53916	hgsc.bcm.edu	36	19	45984595	45984595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016154	exon7	c.G529A	p.E177K	.	.	.
CD79A	973	hgsc.bcm.edu	36	19	47075139	47075139	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001783	exon2	c.C319T	p.R107W	.	.	.
ATP1A3	478	hgsc.bcm.edu	36	19	47174266	47174266	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152296	exon13	c.C1683T	p.F561F	.	.	.
CEACAM8	1088	hgsc.bcm.edu	36	19	47784794	47784794	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001816	exon4	c.A940C	p.R314R	.	.	.
PSG4	5672	hgsc.bcm.edu	36	19	48394162	48394162	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002780	exon3	c.A536T	p.Q179L	.	.	.
ZNF45	7596	hgsc.bcm.edu	36	19	49109523	49109523	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003425	exon10	c.C1905T	p.T635T	.	.	.
ERCC1	2067	hgsc.bcm.edu	36	19	50616432	50616432	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001983	exon3	c.G165A	p.A55A	.	.	.
SLC1A5	6510	hgsc.bcm.edu	36	19	51977534	51977534	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145145	exon3	c.G164A	p.R55H	.	.	.
RASIP1	54922	hgsc.bcm.edu	36	19	53915943	53915943	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017805	exon12	c.G2816T	p.R939L	.	.	.
NUCB1	4924	hgsc.bcm.edu	36	19	54108161	54108161	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006184	exon6	c.C562T	p.R188W	.	.	.
ZNF473	25888	hgsc.bcm.edu	36	19	55240423	55240423	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001006656	exon5	c.A911G	p.D304G	.	.	.
FUT3	2525	hgsc.bcm.edu	36	19	5795477	5795477	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001097640	exon3	c.C374T	p.P125L	.	.	.
BRSK1	84446	hgsc.bcm.edu	36	19	60508766	60508766	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032430	exon16	c.G1890A	p.S630S	.	.	.
ACSBG2	81616	hgsc.bcm.edu	36	19	6134071	6134071	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030924	exon10	c.C1110T	p.S370S	.	.	.
ZNF416	55659	hgsc.bcm.edu	36	19	62781273	62781273	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017879	exon2	c.C39T	p.P13P	.	.	.
ZNF551	90233	hgsc.bcm.edu	36	19	62889807	62889807	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138347	exon3	c.C304A	p.P102T	.	.	.
ZNF551	90233	hgsc.bcm.edu	36	19	62890295	62890295	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138347	exon3	c.G792C	p.E264D	.	.	.
SLC25A23	79085	hgsc.bcm.edu	36	19	6395238	6395238	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024103	exon9	c.C1146T	p.C382C	.	.	.
FBN3	84467	hgsc.bcm.edu	36	19	8059043	8059043	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032447	exon51	c.G6397A	p.G2133S	.	.	.
ADAMTS10	81794	hgsc.bcm.edu	36	19	8563734	8563734	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030957	exon13	c.G1500A	p.W500X	.	.	.
ZNF426	79088	hgsc.bcm.edu	36	19	9500087	9500087	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024106	exon8	c.G1634A	p.R545H	.	.	.
TMEM74	157753	hgsc.bcm.edu	36	8	109865689	109865689	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153015	exon2	c.C815A	p.A272E	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	113325867	113325867	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198123	exon65	c.C10334T	p.A3445V	.	.	.
DSCC1	79075	hgsc.bcm.edu	36	8	120916334	120916334	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024094	exon9	c.T1162C	p.S388P	.	.	.
RNF139	11236	hgsc.bcm.edu	36	8	125568036	125568036	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007218	exon2	c.G965A	p.R322H	.	.	.
KCNK9	51305	hgsc.bcm.edu	36	8	140699970	140699970	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016601	exon2	c.C838T	p.R280W	.	.	.
DENND3	22898	hgsc.bcm.edu	36	8	142230165	142230165	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014957	exon6	c.C546T	p.P182P	.	.	.
DENND3	22898	hgsc.bcm.edu	36	8	142247328	142247328	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014957	exon13	c.C1557T	p.P519P	.	.	.
TUSC3	7991	hgsc.bcm.edu	36	8	15650293	15650293	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178234	exon9	c.T976G	p.F326V	.	.	.
KIAA1967	57805	hgsc.bcm.edu	36	8	22520693	22520693	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021174	exon6	c.G397A	p.A133T	.	.	.
FZD3	7976	hgsc.bcm.edu	36	8	28441274	28441274	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145866	exon4	c.G1078A	p.V360M	.	.	.
EXTL3	2137	hgsc.bcm.edu	36	8	28630448	28630448	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001440	exon3	c.C953T	p.P318L	.	.	.
TEX15	56154	hgsc.bcm.edu	36	8	30823781	30823781	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031271	exon1	c.C2295A	p.T765T	.	.	.
STAR	6770	hgsc.bcm.edu	36	8	38125353	38125353	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000349	exon2	c.G141A	p.T47T	.	.	.
ADAM18	8749	hgsc.bcm.edu	36	8	39656730	39656730	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014237	exon16	c.A1649C	p.K550T	.	.	.
ADAM2	2515	hgsc.bcm.edu	36	8	39746126	39746126	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001464	exon12	c.C1154T	p.A385V	.	.	.
PDE7A	5150	hgsc.bcm.edu	36	8	66799671	66799671	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002603	exon10	c.C882A	p.A294A	.	.	.
TRIM55	84675	hgsc.bcm.edu	36	8	67202063	67202063	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_184085	exon1	c.C6A	p.S2R	.	.	.
PREX2	80243	hgsc.bcm.edu	36	8	69094412	69094412	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025170	exon3	c.C288A	p.H96Q	DEPDC2,skin,NS,Substitution - coding silent,0	.	.
FAM164A	51101	hgsc.bcm.edu	36	8	79772209	79772209	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016010	exon6	c.G517A	p.A173T	.	.	.
GEM	2669	hgsc.bcm.edu	36	8	95331853	95331853	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181702	exon5	c.G752A	p.R251Q	.	.	.
RAD54B	25788	hgsc.bcm.edu	36	8	95473082	95473082	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012415	exon10	c.C1740A	p.P580P	.	.	.
KIAA1429	25962	hgsc.bcm.edu	36	8	95608317	95608317	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015496	exon8	c.C1331T	p.A444V	.	.	.
SDC2	6383	hgsc.bcm.edu	36	8	97575728	97575728	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002998	exon1	c.C53T	p.A18V	.	.	.
MTDH	92140	hgsc.bcm.edu	36	8	98788147	98788147	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178812	exon8	c.A1265G	p.D422G	.	.	.
ATAD2	29028	hgsc.bcm.edu	36	8	124426380	124426381	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	TA	TA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014109	exon19	c.2642_2643del	p.881_881del	.	.	.
AGL	178	hgsc.bcm.edu	36	1	100138800	100138800	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000645	exon24	c.C3332T	p.A1111V	.	.	.
COL11A1	1301	hgsc.bcm.edu	36	1	103126730	103126730	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001854	exon62	c.T4599A	p.P1533P	.	.	.
CASZ1	54897	hgsc.bcm.edu	36	1	10638376	10638376	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079843	exon9	c.C1582T	p.R528C	.	.	.
FAM40A	85369	hgsc.bcm.edu	36	1	110385886	110385886	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033088	exon8	c.G765A	p.P255P	.	.	.
C1orf103	55791	hgsc.bcm.edu	36	1	111296251	111296251	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018372	exon2	c.C778T	p.P260S	.	.	.
PPM1J	333926	hgsc.bcm.edu	36	1	113055177	113055177	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005167	exon7	c.T1086C	p.P362P	.	.	.
SYT6	148281	hgsc.bcm.edu	36	1	114443289	114443289	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_205848	exon5	c.G1059A	p.P353P	.	.	.
AMPD1	270	hgsc.bcm.edu	36	1	115021606	115021606	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000036	exon10	c.T1376C	p.L459P	.	.	.
ATP1A1	476	hgsc.bcm.edu	36	1	116733588	116733588	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000701	exon8	c.C759T	p.T253T	.	.	.
IGSF3	3321	hgsc.bcm.edu	36	1	116923942	116923942	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001542	exon11	c.G2989A	p.V997M	.	.	.
TRIM45	80263	hgsc.bcm.edu	36	1	117460814	117460814	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145635	exon3	c.C1245T	p.G415G	.	.	.
TBX15	6913	hgsc.bcm.edu	36	1	119229010	119229010	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152380	exon8	c.G1359A	p.P453P	.	.	.
NOTCH2	4853	hgsc.bcm.edu	36	1	120374070	120374070	+	Missense_Mutation	SNP	T	T	C	rs61788900	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024408	exon2	c.A137G	p.N46S	.	.	.
VPS13D	55187	hgsc.bcm.edu	36	1	12255696	12255696	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018156	exon18	c.T2153C	p.V718A	.	.	.
PRDM2	7799	hgsc.bcm.edu	36	1	13978878	13978878	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001007257	exon3	c.T1398C	p.L466L	.	.	.
PDE4DIP	9659	hgsc.bcm.edu	36	1	143571339	143571339	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198832	exon40	c.C5784A	p.A1928A	.	.	.
PDE4DIP	9659	hgsc.bcm.edu	36	1	143592815	143592815	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198832	exon28	c.C3606T	p.N1202N	.	.	.
PDE4DIP	9659	hgsc.bcm.edu	36	1	143623511	143623511	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198832	exon18	c.C2319T	p.G773G	.	.	.
ITGA10	8515	hgsc.bcm.edu	36	1	144243493	144243493	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003637	exon8	c.C780A	p.S260S	.	.	.
POLR3C	10623	hgsc.bcm.edu	36	1	144312960	144312960	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006468	exon7	c.G803A	p.R268Q	.	.	.
MTMR11	10903	hgsc.bcm.edu	36	1	148173565	148173565	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181873	exon4	c.C190T	p.R64X	.	.	.
TARS2	80222	hgsc.bcm.edu	36	1	148730509	148730509	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025150	exon5	c.A528C	p.S176S	.	.	.
ANXA9	8416	hgsc.bcm.edu	36	1	149223467	149223467	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003568	exon6	c.C354T	p.D118D	.	.	.
TNRC4	11189	hgsc.bcm.edu	36	1	149953704	149953704	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007185	exon2	c.C218T	p.T73M	.	.	.
C1orf43	25912	hgsc.bcm.edu	36	1	152452999	152452999	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015449	exon3	c.A232G	p.T78A	.	.	.
DCST2	127579	hgsc.bcm.edu	36	1	153263573	153263573	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144622	exon11	c.C1741T	p.R581W	.	.	.
ADAM15	8751	hgsc.bcm.edu	36	1	153297062	153297062	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207195	exon14	c.G1528A	p.E510K	.	.	.
THBS3	7059	hgsc.bcm.edu	36	1	153438808	153438808	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007112	exon9	c.C966T	p.H322H	.	.	.
FDPS	2224	hgsc.bcm.edu	36	1	153548795	153548795	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002004	exon4	c.C465T	p.G155G	.	.	.
MRPL24	79590	hgsc.bcm.edu	36	1	154975012	154975012	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145729	exon2	c.C109A	p.P37T	.	.	.
HDGF	3068	hgsc.bcm.edu	36	1	154980719	154980719	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126050	exon4	c.G397A	p.E133K	.	.	.
INSRR	3645	hgsc.bcm.edu	36	1	155082405	155082405	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014215	exon9	c.G1941T	p.E647D	.	.	.
CADM3	57863	hgsc.bcm.edu	36	1	157433471	157433471	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021189	exon8	c.A1051C	p.N351H	.	.	.
B4GALT3	8703	hgsc.bcm.edu	36	1	159408345	159408345	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199874	exon8	c.G1067A	p.R356H	.	.	.
OLFML2B	25903	hgsc.bcm.edu	36	1	160234280	160234280	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015441	exon6	c.C1433T	p.T478M	.	.	.
MAEL	84944	hgsc.bcm.edu	36	1	165225236	165225236	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032858	exon1	c.G23T	p.R8L	.	.	.
IQWD1	55827	hgsc.bcm.edu	36	1	166210852	166210852	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198957	exon3	c.C320T	p.T107M	.	.	.
XCL2	6846	hgsc.bcm.edu	36	1	166777915	166777915	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003175	exon2	c.G116A	p.R39Q	.	.	.
C1orf112	55732	hgsc.bcm.edu	36	1	168087608	168087608	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018186	exon23	c.T2271G	p.A757A	.	.	.
KLHL20	27252	hgsc.bcm.edu	36	1	171987566	171987566	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014458	exon4	c.A638G	p.Q213R	.	.	.
RABGAP1L	9910	hgsc.bcm.edu	36	1	172937952	172937952	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014857	exon17	c.A2104C	p.T702P	.	.	.
FAM5B	57795	hgsc.bcm.edu	36	1	175516853	175516853	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021165	exon8	c.G1918C	p.E640Q	.	.	.
FAM5B	57795	hgsc.bcm.edu	36	1	175516951	175516951	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021165	exon8	c.T2016G	p.S672S	.	.	.
C1orf125	126859	hgsc.bcm.edu	36	1	177605824	177605824	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144696	exon4	c.C362T	p.T121I	.	.	.
NPHS2	7827	hgsc.bcm.edu	36	1	177787146	177787146	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014625	exon8	c.T937C	p.S313P	.	.	.
QSOX1	5768	hgsc.bcm.edu	36	1	178426244	178426244	+	Silent	SNP	G	G	A	rs61736297	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002826	exon10	c.G1194A	p.P398P	.	.	.
GLUL	2752	hgsc.bcm.edu	36	1	180621595	180621595	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002065	exon6	c.G526A	p.V176M	.	.	.
NPL	80896	hgsc.bcm.edu	36	1	181041951	181041951	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030769	exon4	c.G191A	p.R64H	.	.	.
UBR4	23352	hgsc.bcm.edu	36	1	19372263	19372263	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020765	exon24	c.A3290G	p.Q1097R	.	.	.
CFHR5	81494	hgsc.bcm.edu	36	1	195219814	195219814	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030787	exon3	c.C354T	p.Y118Y	.	.	.
CRB1	23418	hgsc.bcm.edu	36	1	195663305	195663305	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201253	exon7	c.G2227A	p.V743I	.	.	.
PIK3C2B	5287	hgsc.bcm.edu	36	1	202695671	202695671	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002646	exon9	c.C1524T	p.F508F	.	.	.
RASSF5	83593	hgsc.bcm.edu	36	1	204825182	204825182	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182663	exon5	c.C1036A	p.L346M	.	.	.
C4BPA	722	hgsc.bcm.edu	36	1	205364190	205364190	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000715	exon6	c.G562A	p.G188S	.	.	.
PLXNA2	5362	hgsc.bcm.edu	36	1	206457212	206457212	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025179	exon2	c.A679G	p.K227E	.	.	.
TRAF3IP3	80342	hgsc.bcm.edu	36	1	208015631	208015631	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025228	exon11	c.A980G	p.E327G	.	.	.
EIF4G3	8672	hgsc.bcm.edu	36	1	21009865	21009865	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003760	exon31	c.C4529T	p.A1510V	.	.	.
SPATA17	128153	hgsc.bcm.edu	36	1	216041724	216041724	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138796	exon9	c.T914C	p.I305T	.	.	.
DISP1	84976	hgsc.bcm.edu	36	1	221243518	221243518	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032890	exon8	c.A2156G	p.Y719C	.	.	.
PARP1	142	hgsc.bcm.edu	36	1	224639921	224639921	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001618	exon7	c.C918T	p.S306S	.	.	.
MPN2	339501	hgsc.bcm.edu	36	1	226100315	226100315	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_183062	exon5	c.G764A	p.R255H	.	.	.
C1orf198	84886	hgsc.bcm.edu	36	1	229045847	229045847	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136494	exon5	c.T689C	p.V230A	.	.	.
EPHB2	2048	hgsc.bcm.edu	36	1	22983607	22983607	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017449	exon3	c.G262A	p.V88M	.	.	.
HTR1D	3352	hgsc.bcm.edu	36	1	23393050	23393050	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000864	exon1	c.G250A	p.D84N	.	.	.
LYST	1130	hgsc.bcm.edu	36	1	234039105	234039105	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000081	exon5	c.C1636T	p.R546W	.	.	.
NID1	4811	hgsc.bcm.edu	36	1	234255949	234255949	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002508	exon8	c.C1854T	p.C618C	.	.	.
C1orf71	163882	hgsc.bcm.edu	36	1	244864502	244864502	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152609	exon6	c.A808G	p.T270A	.	.	.
OR2T35	403244	hgsc.bcm.edu	36	1	246868215	246868215	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001827	exon1	c.G968A	p.G323D	.	.	.
DHDDS	79947	hgsc.bcm.edu	36	1	26637284	26637284	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024887	exon3	c.C102T	p.D34D	.	.	.
GPN2	54707	hgsc.bcm.edu	36	1	27078767	27078767	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018066	exon5	c.C921A	p.A307A	.	.	.
WASF2	10163	hgsc.bcm.edu	36	1	27614030	27614030	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006990	exon6	c.T552C	p.D184D	.	.	.
WASF2	10163	hgsc.bcm.edu	36	1	27627876	27627876	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006990	exon2	c.C112T	p.R38X	.	.	.
FABP3	2170	hgsc.bcm.edu	36	1	31618439	31618439	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004102	exon1	c.G10A	p.A4T	.	.	.
LCK	3932	hgsc.bcm.edu	36	1	32513558	32513558	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042771	exon5	c.T328C	p.F110L	.	.	.
KIAA0319L	79932	hgsc.bcm.edu	36	1	35700896	35700896	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024874	exon8	c.C1207T	p.R403C	.	.	.
STK40	83931	hgsc.bcm.edu	36	1	36592592	36592592	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032017	exon7	c.C583T	p.H195Y	.	.	.
CCDC27	148870	hgsc.bcm.edu	36	1	3677888	3677888	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152492	exon12	c.C1912T	p.P638S	.	.	.
MACF1	23499	hgsc.bcm.edu	36	1	39322530	39322530	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012090	exon3	c.G53A	p.R18Q	.	.	.
MACF1	23499	hgsc.bcm.edu	36	1	39579100	39579100	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033044	exon4	c.G5789A	p.R1930Q	.	.	.
NT5C1A	84618	hgsc.bcm.edu	36	1	39899460	39899460	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032526	exon5	c.C619T	p.R207C	.	.	.
RLF	6018	hgsc.bcm.edu	36	1	40474537	40474537	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012421	exon8	c.A1576C	p.R526R	.	.	.
RLF	6018	hgsc.bcm.edu	36	1	40476379	40476379	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012421	exon8	c.A3418G	p.T1140A	.	.	.
RLF	6018	hgsc.bcm.edu	36	1	40477948	40477948	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012421	exon8	c.G4987A	p.A1663T	.	.	.
ZMPSTE24	10269	hgsc.bcm.edu	36	1	40530917	40530917	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005857	exon10	c.A1417G	p.K473E	.	.	.
ST3GAL3	6487	hgsc.bcm.edu	36	1	44132671	44132671	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174964	exon6	c.A377G	p.D126G	.	.	.
SLC6A9	6536	hgsc.bcm.edu	36	1	44236186	44236186	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201649	exon13	c.G1854A	p.L618L	.	.	.
KIF2C	11004	hgsc.bcm.edu	36	1	45000694	45000694	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006845	exon18	c.C1841T	p.A614V	.	.	.
GPBP1L1	60313	hgsc.bcm.edu	36	1	45878578	45878578	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021639	exon8	c.C635T	p.A212V	.	.	.
ZCCHC11	23318	hgsc.bcm.edu	36	1	52715972	52715972	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001009881	exon12	c.T2019C	p.I673I	.	.	.
SLC1A7	6512	hgsc.bcm.edu	36	1	53341769	53341769	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006671	exon5	c.T534C	p.P178P	.	.	.
LDLRAD1	388633	hgsc.bcm.edu	36	1	54252547	54252547	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010978	exon3	c.C152T	p.A51V	.	.	.
C1orf168	199920	hgsc.bcm.edu	36	1	57030957	57030957	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004303	exon2	c.C117T	p.D39D	.	.	.
ROR1	4919	hgsc.bcm.edu	36	1	64380920	64380920	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005012	exon7	c.C1173T	p.C391C	.	.	.
CACHD1	57685	hgsc.bcm.edu	36	1	64929796	64929796	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020925	exon27	c.G3636A	p.A1212A	.	.	.
PDE4B	5142	hgsc.bcm.edu	36	1	66485869	66485869	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002600	exon4	c.C420T	p.S140S	.	.	.
FUBP1	8880	hgsc.bcm.edu	36	1	78205205	78205205	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003902	exon6	c.G366T	p.Q122H	.	.	.
LPAR3	23566	hgsc.bcm.edu	36	1	85052434	85052434	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012152	exon3	c.G745T	p.V249L	.	.	.
BCL10	8915	hgsc.bcm.edu	36	1	85506182	85506182	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003921	exon3	c.G418T	p.E140X	.	.	.
CLCA2	9635	hgsc.bcm.edu	36	1	86678540	86678540	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006536	exon8	c.C1325A	p.S442Y	.	.	.
CLCA1	1179	hgsc.bcm.edu	36	1	86714732	86714732	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001285	exon4	c.C465G	p.V155V	.	.	.
CCBL2	56267	hgsc.bcm.edu	36	1	89174485	89174485	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008662	exon13	c.T1232A	p.I411N	.	.	.
GBP3	2635	hgsc.bcm.edu	36	1	89250126	89250126	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018284	exon7	c.C1041A	p.T347T	.	.	.
LRRC8D	55144	hgsc.bcm.edu	36	1	90171841	90171841	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134479	exon3	c.C626T	p.T209M	.	.	.
BARHL2	343472	hgsc.bcm.edu	36	1	90955176	90955176	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020063	exon1	c.T165G	p.I55M	.	.	.
BARHL2	343472	hgsc.bcm.edu	36	1	90955303	90955303	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020063	exon1	c.T38C	p.I13T	.	.	.
EVI5	7813	hgsc.bcm.edu	36	1	92974763	92974763	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005665	exon2	c.G61T	p.D21Y	.	.	.
DPYD	1806	hgsc.bcm.edu	36	1	97543433	97543433	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000110	exon18	c.G2269A	p.A757T	.	.	.
PAP2D	163404	hgsc.bcm.edu	36	1	99194827	99194827	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001037317	exon2	c.A296C	p.N99T	.	.	.
FRRS1	391059	hgsc.bcm.edu	36	1	99957714	99957714	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001013660	exon10	c.G1084A	p.G362R	.	.	.
ZNF326	284695	hgsc.bcm.edu	36	1	90260418	90260419	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182976	exon11	c.1327_1328del	p.443_443del	.	.	.
MMP7	4316	hgsc.bcm.edu	36	11	101903598	101903598	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002423	exon3	c.T351C	p.T117T	.	.	.
MMP27	64066	hgsc.bcm.edu	36	11	102069912	102069912	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022122	exon8	c.A1128G	p.I376M	.	.	.
GRIA4	2893	hgsc.bcm.edu	36	11	105350307	105350307	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001077243	exon16	c.G2470A	p.G824S	.	.	.
QSK	23387	hgsc.bcm.edu	36	11	116234004	116234004	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025164	exon20	c.C3069T	p.H1023H	.	.	.
HYOU1	10525	hgsc.bcm.edu	36	11	118424417	118424417	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006389	exon19	c.C2234T	p.A745V	.	.	.
MCAM	4162	hgsc.bcm.edu	36	11	118688086	118688086	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006500	exon9	c.G1029A	p.V343V	.	.	.
UBASH3B	84959	hgsc.bcm.edu	36	11	122184053	122184053	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032873	exon13	c.T1771C	p.S591P	.	.	.
C11orf63	79864	hgsc.bcm.edu	36	11	122261919	122261919	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024806	exon2	c.C152T	p.T51M	.	.	.
ROBO4	54538	hgsc.bcm.edu	36	11	124260169	124260169	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019055	exon17	c.C2979T	p.H993H	.	.	.
PATE2	399967	hgsc.bcm.edu	36	11	125153076	125153076	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_212555	exon3	c.A108T	p.K36N	.	.	.
CDON	50937	hgsc.bcm.edu	36	11	125336998	125336998	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016952	exon19	c.C3462T	p.H1154H	.	.	.
ADAMTS15	170689	hgsc.bcm.edu	36	11	129837856	129837856	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139055	exon4	c.G1513A	p.V505M	.	.	.
SNX19	399979	hgsc.bcm.edu	36	11	130255801	130255801	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014758	exon9	c.G2684T	p.R895L	.	.	.
SNX19	399979	hgsc.bcm.edu	36	11	130283151	130283151	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014758	exon5	c.C2072T	p.A691V	.	.	.
NAV2	89797	hgsc.bcm.edu	36	11	20032275	20032275	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001111018	exon18	c.C4363A	p.L1455I	.	.	.
SLC6A5	9152	hgsc.bcm.edu	36	11	20582488	20582488	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004211	exon3	c.C621T	p.Y207Y	.	.	.
SLC6A5	9152	hgsc.bcm.edu	36	11	20608905	20608905	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004211	exon10	c.G1592A	p.R531H	.	.	.
KIF18A	81930	hgsc.bcm.edu	36	11	28001943	28001943	+	Silent	SNP	G	G	A	rs35440657	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031217	exon16	c.C2535T	p.D845D	.	.	.
TRIM44	54765	hgsc.bcm.edu	36	11	35641882	35641882	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017583	exon1	c.A647G	p.D216G	.	.	.
TRIM44	54765	hgsc.bcm.edu	36	11	35704162	35704162	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017583	exon3	c.G862A	p.A288T	.	.	.
COMMD9	29099	hgsc.bcm.edu	36	11	36252853	36252853	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001101653	exon5	c.G376A	p.A126T	.	.	.
TTC17	55761	hgsc.bcm.edu	36	11	43382191	43382191	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018259	exon11	c.A1400T	p.D467V	.	.	.
PRDM11	56981	hgsc.bcm.edu	36	11	45202477	45202477	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020229	exon8	c.A978G	p.V326V	.	.	.
MADD	8567	hgsc.bcm.edu	36	11	47302681	47302681	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003682	exon33	c.A4699G	p.N1567D	.	.	.
OR52A1	23538	hgsc.bcm.edu	36	11	5129834	5129834	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012375	exon1	c.A342G	p.S114S	.	.	.
OR51V1	283111	hgsc.bcm.edu	36	11	5178182	5178182	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004760	exon1	c.C325T	p.Q109X	.	.	.
UBQLN3	50613	hgsc.bcm.edu	36	11	5486241	5486241	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017481	exon2	c.C1124A	p.P375Q	.	.	.
APLNR	187	hgsc.bcm.edu	36	11	56760358	56760358	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005161	exon1	c.C697T	p.R233C	.	.	.
P2RX3	5024	hgsc.bcm.edu	36	11	56892463	56892463	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002559	exon10	c.G979T	p.A327S	.	.	.
OR52N1	79473	hgsc.bcm.edu	36	11	5765944	5765944	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001913	exon1	c.G679A	p.V227I	.	.	.
FAM111A	63901	hgsc.bcm.edu	36	11	58676235	58676235	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142521	exon5	c.G518A	p.R173K	.	.	.
ZP1	22917	hgsc.bcm.edu	36	11	60397285	60397285	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207341	exon7	c.C1187A	p.P396H	.	.	.
CD6	923	hgsc.bcm.edu	36	11	60495948	60495948	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006725	exon1	c.C35T	p.T12M	.	.	.
DDB1	1642	hgsc.bcm.edu	36	11	60826715	60826715	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001923	exon24	c.C3027T	p.H1009H	.	.	.
CYBASC3	220002	hgsc.bcm.edu	36	11	60877897	60877897	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001161454	exon5	c.A379T	p.T127S	.	.	.
AHNAK	79026	hgsc.bcm.edu	36	11	62042614	62042614	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001620	exon5	c.G15851A	p.G5284E	.	.	.
NXF1	10482	hgsc.bcm.edu	36	11	62318405	62318405	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006362	exon19	c.C1661T	p.T554M	.	.	.
PLCB3	5331	hgsc.bcm.edu	36	11	63782641	63782641	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184883	exon9	c.C932T	p.T311I	.	.	.
MEN1	4221	hgsc.bcm.edu	36	11	64331723	64331723	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130802	exon4	c.G675A	p.W225X	.	.	.
KLC2	64837	hgsc.bcm.edu	36	11	65790186	65790186	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134775	exon14	c.G1649A	p.R550Q	.	.	.
SPTBN2	6712	hgsc.bcm.edu	36	11	66217081	66217081	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006946	exon24	c.G4921A	p.A1641T	.	.	.
SYT12	91683	hgsc.bcm.edu	36	11	66572643	66572643	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001177880	exon8	c.C1105T	p.R369C	.	.	.
SUV420H1	51111	hgsc.bcm.edu	36	11	67709912	67709912	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016028	exon3	c.G220A	p.A74T	.	.	.
PPFIA1	8500	hgsc.bcm.edu	36	11	69879979	69879979	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003626	exon19	c.G2553T	p.Q851H	.	.	.
C2CD3	26005	hgsc.bcm.edu	36	11	73492230	73492230	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015531	exon14	c.C2174T	p.A725V	.	.	.
TALDO1	6888	hgsc.bcm.edu	36	11	750170	750170	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006755	exon4	c.C378T	p.I126I	.	.	.
RAB38	23682	hgsc.bcm.edu	36	11	87548058	87548058	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022337	exon1	c.T143G	p.L48R	.	.	.
GRM5	2915	hgsc.bcm.edu	36	11	88026046	88026046	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000842	exon4	c.G1085A	p.R362H	.	.	.
NAALAD2	10003	hgsc.bcm.edu	36	11	89564438	89564438	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005467	exon19	c.G2098A	p.D700N	.	.	.
TECTA	7007	hgsc.bcm.edu	36	11	120566660	120566662	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	CTT	CTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005422	exon23	c.6403_6405del	p.2135_2135del	.	.	.
KRTAP5-5	439915	hgsc.bcm.edu	36	11	1607696	1607696	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001480	exon1	c.G50T	p.R17L	KRTAP5-5,lung,NS,Substitution - Missense,+1	.	.
MICAL1	64780	hgsc.bcm.edu	36	6	109877895	109877895	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001159291	exon8	c.C1020T	p.G340G	.	.	.
GPR6	2830	hgsc.bcm.edu	36	6	110407543	110407543	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005284	exon1	c.C535T	p.R179C	.	.	.
KIAA1919	91749	hgsc.bcm.edu	36	6	111694311	111694311	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153369	exon4	c.G853A	p.A285T	.	.	.
KIAA1919	91749	hgsc.bcm.edu	36	6	111694840	111694840	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153369	exon4	c.A1382C	p.D461A	.	.	.
C6orf58	352999	hgsc.bcm.edu	36	6	127944030	127944030	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010905	exon4	c.C584T	p.S195L	.	.	.
LAMA2	3908	hgsc.bcm.edu	36	6	129827134	129827134	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079823	exon50	c.G6999T	p.Q2333H	.	.	.
LATS1	9113	hgsc.bcm.edu	36	6	150043187	150043187	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004690	exon5	c.A2110G	p.M704V	.	.	.
LATS1	9113	hgsc.bcm.edu	36	6	150046912	150046912	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004690	exon4	c.A1006G	p.S336G	.	.	.
AKAP12	9590	hgsc.bcm.edu	36	6	151716152	151716152	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005100	exon4	c.G4933A	p.E1645K	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152569101	152569101	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015293	exon41	c.C6486T	p.G2162G	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152680979	152680979	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015293	exon1	c.T74A	p.I25K	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152865530	152865530	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033071	exon10	c.C840A	p.T280T	.	.	.
TIAM2	26230	hgsc.bcm.edu	36	6	155545114	155545114	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012454	exon12	c.G2770A	p.V924I	.	.	.
ARID1B	57492	hgsc.bcm.edu	36	6	157569199	157569199	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017519	exon19	c.C5193T	p.D1731D	.	.	.
TULP4	56995	hgsc.bcm.edu	36	6	158754164	158754164	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001007466	exon2	c.A332C	p.Q111P	.	.	.
MAP3K4	4216	hgsc.bcm.edu	36	6	161453717	161453717	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006724	exon24	c.G4397A	p.R1466H	.	.	.
QKI	9444	hgsc.bcm.edu	36	6	163907799	163907799	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006775	exon7	c.A991T	p.I331F	.	.	.
ATXN1	6310	hgsc.bcm.edu	36	6	16414971	16414971	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000332	exon9	c.G2016A	p.P672P	.	.	.
AOF1	221656	hgsc.bcm.edu	36	6	18269634	18269634	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153042	exon4	c.G185C	p.C62S	.	.	.
E2F3	1871	hgsc.bcm.edu	36	6	20598491	20598491	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001949	exon7	c.A1249G	p.N417D	.	.	.
GPLD1	2822	hgsc.bcm.edu	36	6	24545367	24545367	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001503	exon21	c.G2150A	p.R717Q	.	.	.
ALDH5A1	7915	hgsc.bcm.edu	36	6	24628622	24628622	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170740	exon7	c.C924T	p.H308H	.	.	.
HIST1H4B	8366	hgsc.bcm.edu	36	6	26135323	26135323	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003544	exon1	c.G137A	p.R46Q	.	.	.
HIST1H4D	8360	hgsc.bcm.edu	36	6	26297068	26297068	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003539	exon1	c.C216A	p.T72T	.	.	.
SERPINB1	1992	hgsc.bcm.edu	36	6	2781180	2781180	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030666	exon6	c.G644A	p.R215H	.	.	.
SERPINB9	5272	hgsc.bcm.edu	36	6	2837098	2837098	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004155	exon6	c.C691T	p.L231L	.	.	.
GABBR1	2550	hgsc.bcm.edu	36	6	29706237	29706237	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001470	exon4	c.G452A	p.S151N	.	.	.
HLA-G	3135	hgsc.bcm.edu	36	6	29905654	29905654	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002127	exon6	c.G978T	p.A326A	.	.	.
TRIM39	56658	hgsc.bcm.edu	36	6	30405378	30405378	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199119	exon1	c.G305A	p.R102Q	.	.	.
HSPA1L	3305	hgsc.bcm.edu	36	6	31886312	31886312	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005527	exon2	c.G1417A	p.V473I	.	.	.
TNXB	7148	hgsc.bcm.edu	36	6	32118251	32118251	+	Missense_Mutation	SNP	T	T	A	rs17421133	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032470	exon9	c.A1457T	p.N486I	.	.	.
FKBPL	63943	hgsc.bcm.edu	36	6	32205399	32205399	+	Missense_Mutation	SNP	G	G	C	rs35580488	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022110	exon2	c.C137G	p.T46R	.	.	.
HLA-DRA	3122	hgsc.bcm.edu	36	6	32519529	32519529	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019111	exon4	c.C629A	p.P210H	.	.	.
TAP1	6890	hgsc.bcm.edu	36	6	32928999	32928999	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000593	exon1	c.G573A	p.L191L	.	.	.
HLA-DPB1	3115	hgsc.bcm.edu	36	6	33156439	33156439	+	Missense_Mutation	SNP	T	T	A	rs1126509	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002121	exon2	c.A113A	p.Y38Y	.	.	.
COL11A2	1302	hgsc.bcm.edu	36	6	33241686	33241686	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080681	exon60	c.G4224A	p.P1408P	.	.	.
TREM2	54209	hgsc.bcm.edu	36	6	41237287	41237287	+	Missense_Mutation	SNP	G	G	A	rs2234252	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018965	exon2	c.C83T	p.A28V	.	.	.
TFEB	7942	hgsc.bcm.edu	36	6	41762874	41762874	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007162	exon8	c.C739T	p.R247X	.	.	.
TRERF1	55809	hgsc.bcm.edu	36	6	42330572	42330572	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033502	exon13	c.A2651G	p.Y884C	.	.	.
TRERF1	55809	hgsc.bcm.edu	36	6	42344815	42344815	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033502	exon5	c.G492T	p.Q164H	.	.	.
CUL7	9820	hgsc.bcm.edu	36	6	43121744	43121744	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014780	exon13	c.C2724T	p.C908C	.	.	.
KLC4	89953	hgsc.bcm.edu	36	6	43137091	43137091	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201521	exon2	c.G40A	p.G14S	.	.	.
POLR1C	9533	hgsc.bcm.edu	36	6	43592830	43592830	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004875	exon1	c.C5T	p.A2V	.	.	.
POLR1C	9533	hgsc.bcm.edu	36	6	43596376	43596376	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004875	exon7	c.G691A	p.A231T	.	.	.
FARS2	10667	hgsc.bcm.edu	36	6	5558418	5558418	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006567	exon6	c.G1083A	p.P361P	.	.	.
COL9A1	1297	hgsc.bcm.edu	36	6	71047817	71047817	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001851	exon8	c.C873T	p.I291I	.	.	.
KCNQ5	56479	hgsc.bcm.edu	36	6	73388976	73388976	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160133	exon1	c.A338C	p.N113T	.	.	.
IMPG1	3617	hgsc.bcm.edu	36	6	76771910	76771910	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001563	exon10	c.A949G	p.S317G	.	.	.
ORC3L	23595	hgsc.bcm.edu	36	6	88419572	88419572	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012381	exon14	c.C1402G	p.L468V	.	.	.
CNR1	1268	hgsc.bcm.edu	36	6	88910721	88910721	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001160259	exon2	c.G992A	p.R331Q	.	.	.
MDN1	23195	hgsc.bcm.edu	36	6	90462901	90462901	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014611	exon60	c.T9282A	p.S3094S	.	.	.
MDN1	23195	hgsc.bcm.edu	36	6	90518010	90518010	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014611	exon23	c.C3088T	p.P1030S	.	.	.
BACH2	60468	hgsc.bcm.edu	36	6	90718022	90718022	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021813	exon7	c.C524T	p.T175M	.	.	.
CUL9	23113	hgsc.bcm.edu	36	6	43280127	43280128	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015089	exon21	c.4211_4212del	p.1404_1404del	.	.	.
DST	667	hgsc.bcm.edu	36	6	56592292	56592294	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	TTC	TTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001723	exon23	c.4497_4499del	p.1499_1500del	.	.	.
MYH8	4626	hgsc.bcm.edu	36	17	10242661	10242661	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002472	exon30	c.G4003A	p.A1335T	.	.	.
TSR1	55720	hgsc.bcm.edu	36	17	2185607	2185607	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018128	exon3	c.G369A	p.M123I	.	.	.
PROCA1	147011	hgsc.bcm.edu	36	17	24055887	24055887	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152465	exon2	c.C193A	p.L65I	.	.	.
UNC45B	146862	hgsc.bcm.edu	36	17	30515246	30515246	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173167	exon9	c.C1099T	p.R367C	.	.	.
UNC45B	146862	hgsc.bcm.edu	36	17	30528231	30528231	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173167	exon16	c.C2114G	p.S705C	.	.	.
SHPK	23729	hgsc.bcm.edu	36	17	3465523	3465523	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013276	exon6	c.C881A	p.P294H	.	.	.
KRT26	353288	hgsc.bcm.edu	36	17	36179578	36179578	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181539	exon5	c.G923A	p.R308H	.	.	.
HAP1	9001	hgsc.bcm.edu	36	17	37134874	37134874	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079871	exon10	c.G1390T	p.G464W	.	.	.
KCNH4	23415	hgsc.bcm.edu	36	17	37565728	37565728	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012285	exon16	c.G2910A	p.A970A	.	.	.
ZZEF1	23140	hgsc.bcm.edu	36	17	3875136	3875136	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015113	exon43	c.G6918T	p.K2306N	.	.	.
UBTF	7343	hgsc.bcm.edu	36	17	39643118	39643118	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001076683	exon14	c.T1415C	p.V472A	.	.	.
KIAA1267	284058	hgsc.bcm.edu	36	17	41499846	41499846	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015443	exon6	c.G1727A	p.R576Q	.	.	.
WNT3	7473	hgsc.bcm.edu	36	17	42201216	42201216	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030753	exon4	c.A707G	p.D236G	.	.	.
ABCC3	8714	hgsc.bcm.edu	36	17	46108744	46108744	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003786	exon23	c.C3174T	p.S1058S	.	.	.
KIF1C	10749	hgsc.bcm.edu	36	17	4846843	4846843	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006612	exon8	c.G702A	p.T234T	.	.	.
STXBP4	252983	hgsc.bcm.edu	36	17	50592205	50592205	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178509	exon18	c.G1596A	p.L532L	.	.	.
BZRAP1	9256	hgsc.bcm.edu	36	17	53755709	53755709	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004758	exon7	c.C1053T	p.C351C	.	.	.
SUPT4H1	6827	hgsc.bcm.edu	36	17	53779895	53779895	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003168	exon3	c.C226T	p.R76X	.	.	.
TRIM37	4591	hgsc.bcm.edu	36	17	54447786	54447786	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005207	exon21	c.C2543T	p.A848V	.	.	.
TRIM37	4591	hgsc.bcm.edu	36	17	54447942	54447942	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005207	exon21	c.G2387A	p.G796D	.	.	.
MAP3K3	4215	hgsc.bcm.edu	36	17	59063856	59063856	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002401	exon2	c.A88T	p.T30S	.	.	.
MAP3K3	4215	hgsc.bcm.edu	36	17	59116663	59116663	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002401	exon8	c.T691C	p.L231L	.	.	.
AXIN2	8313	hgsc.bcm.edu	36	17	60963467	60963467	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004655	exon7	c.G1889A	p.S630N	.	.	.
CACNG1	786	hgsc.bcm.edu	36	17	62481789	62481789	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000727	exon3	c.G413A	p.R138Q	.	.	.
BPTF	2186	hgsc.bcm.edu	36	17	63339286	63339286	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182641	exon11	c.C4824T	p.G1608G	.	.	.
ARSG	22901	hgsc.bcm.edu	36	17	63876326	63876326	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014960	exon7	c.C747T	p.H249H	.	.	.
SLC9A3R1	9368	hgsc.bcm.edu	36	17	70274679	70274679	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004252	exon4	c.C767A	p.P256H	.	.	.
SLC25A19	60386	hgsc.bcm.edu	36	17	70781210	70781210	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021734	exon8	c.C880A	p.L294I	.	.	.
SLC2A4	6517	hgsc.bcm.edu	36	17	7128099	7128099	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042	exon5	c.A531T	p.Q177H	.	.	.
CHRNB1	1140	hgsc.bcm.edu	36	17	7291125	7291125	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000747	exon5	c.C393T	p.V131V	.	.	.
USP36	57602	hgsc.bcm.edu	36	17	74306634	74306634	+	Missense_Mutation	SNP	C	C	T	rs34458438	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025090	exon19	c.G3191A	p.R1064Q	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7517864	7517864	+	Missense_Mutation	SNP	G	G	A	rs55832599	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126114	exon8	c.C799T	p.R267W	TP53,vulva,NS,Substitution - Missense,-2	.	.
EIF4A3	9775	hgsc.bcm.edu	36	17	75728514	75728514	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014740	exon5	c.C393T	p.D131D	.	.	.
ALOX15B	247	hgsc.bcm.edu	36	17	7888935	7888935	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039130	exon6	c.A740T	p.N247I	.	.	.
NDEL1	81565	hgsc.bcm.edu	36	17	8290923	8290923	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001025579	exon4	c.G367A	p.D123N	.	.	.
ABR	29	hgsc.bcm.edu	36	17	908746	908746	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021962	exon11	c.C1294T	p.R432W	.	.	.
GAS7	8522	hgsc.bcm.edu	36	17	9803294	9803294	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003644	exon1	c.C55T	p.L19L	.	.	.
CHD3	1107	hgsc.bcm.edu	36	17	7755535	7755537	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	GAA	GAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005852	exon39	c.5808_5810del	p.1936_1937del	.	.	.
TEX14	56155	hgsc.bcm.edu	36	17	53993927	53993927	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198393	exon30	c.A4230T	p.P1410P	.	.	.
IGSF5	150084	hgsc.bcm.edu	36	21	40073036	40073036	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080444	exon5	c.T868C	p.C290R	.	.	.
MX1	4599	hgsc.bcm.edu	36	21	41729721	41729721	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144925	exon8	c.G193A	p.E65K	.	.	.
RIPK4	54101	hgsc.bcm.edu	36	21	42049961	42049961	+	Silent	SNP	G	G	A	rs55798804	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020639	exon2	c.C267T	p.R89R	.	.	.
ZNF295	49854	hgsc.bcm.edu	36	21	42287203	42287203	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001098403	exon3	c.G71A	p.R24H	.	.	.
TFF2	7032	hgsc.bcm.edu	36	21	42644120	42644120	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005423	exon1	c.G16A	p.A6T	.	.	.
TRPM2	7226	hgsc.bcm.edu	36	21	44635602	44635602	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003307	exon11	c.C1460T	p.T487M	.	.	.
ERCC4	2072	hgsc.bcm.edu	36	16	13936593	13936593	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005236	exon8	c.C1303T	p.L435F	.	.	.
POLR3E	55718	hgsc.bcm.edu	36	16	22233954	22233954	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018119	exon9	c.G566A	p.R189H	.	.	.
PLK1	5347	hgsc.bcm.edu	36	16	23607561	23607561	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005030	exon7	c.G1264C	p.G422R	.	.	.
TBX6	6911	hgsc.bcm.edu	36	16	30005644	30005644	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004608	exon7	c.T869C	p.L290P	.	.	.
SRCAP	10847	hgsc.bcm.edu	36	16	30652729	30652729	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006662	exon30	c.C6508T	p.R2170W	.	.	.
PRSS36	146547	hgsc.bcm.edu	36	16	31060629	31060629	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173502	exon11	c.C1675A	p.L559M	.	.	.
BTBD12	84464	hgsc.bcm.edu	36	16	3587991	3587991	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032444	exon6	c.C1174T	p.H392Y	.	.	.
C16orf71	146562	hgsc.bcm.edu	36	16	4727915	4727915	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139170	exon3	c.C243A	p.A81A	.	.	.
LPCAT2	54947	hgsc.bcm.edu	36	16	54140751	54140751	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017839	exon10	c.G997A	p.G333R	.	.	.
AMFR	267	hgsc.bcm.edu	36	16	54993179	54993179	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144	exon8	c.C1052T	p.A351V	.	.	.
CDH8	1006	hgsc.bcm.edu	36	16	60612635	60612635	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001796	exon2	c.C174A	p.R58R	.	.	.
CDH5	1003	hgsc.bcm.edu	36	16	64983627	64983627	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001795	exon7	c.G1057A	p.A353T	.	.	.
NAE1	8883	hgsc.bcm.edu	36	16	65397214	65397214	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001018159	exon20	c.G1444A	p.A482T	.	.	.
CTCF	10664	hgsc.bcm.edu	36	16	66208220	66208220	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001191022	exon3	c.C40T	p.R14C	.	.	.
A2BP1	54715	hgsc.bcm.edu	36	16	7700697	7700697	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145891	exon13	c.A1206G	p.S402S	.	.	.
MBTPS1	8720	hgsc.bcm.edu	36	16	82647131	82647131	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003791	exon22	c.G2942A	p.G981D	.	.	.
ABAT	18	hgsc.bcm.edu	36	16	8769566	8769566	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000663	exon10	c.G619A	p.D207N	.	.	.
APCDD1	147495	hgsc.bcm.edu	36	18	10477790	10477790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153000	exon5	c.C1300T	p.R434C	.	.	.
SS18	6760	hgsc.bcm.edu	36	18	21873372	21873372	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005637	exon6	c.A654G	p.P218P	.	.	.
DSC1	1823	hgsc.bcm.edu	36	18	26979621	26979621	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004948	exon7	c.A890G	p.H297R	.	.	.
B4GALT6	9331	hgsc.bcm.edu	36	18	27479318	27479318	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004775	exon4	c.A469G	p.K157E	.	.	.
BRUNOL4	56853	hgsc.bcm.edu	36	18	33108341	33108341	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001025089	exon6	c.G702T	p.M234I	.	.	.
TCEB3B	51224	hgsc.bcm.edu	36	18	42814668	42814668	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016427	exon1	c.C966T	p.G322G	.	.	.
SMAD4	4089	hgsc.bcm.edu	36	18	46845917	46845917	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005359	exon9	c.G1082A	p.R361H	SMAD4,small_intestine,duodenum,Substitution - Missense,+1	.	.
DCC	1630	hgsc.bcm.edu	36	18	49239610	49239610	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005215	exon24	c.A3403G	p.T1135A	.	.	.
WDR7	23335	hgsc.bcm.edu	36	18	52575164	52575164	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015285	exon15	c.G2342A	p.R781Q	.	.	.
EPB41L3	23136	hgsc.bcm.edu	36	18	5397717	5397717	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012307	exon15	c.G2140A	p.A714T	.	.	.
TNFRSF11A	8792	hgsc.bcm.edu	36	18	58184946	58184946	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003839	exon8	c.G756A	p.E252E	.	.	.
CDH19	28513	hgsc.bcm.edu	36	18	62329891	62329891	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021153	exon10	c.T1470G	p.T490T	.	.	.
L3MBTL4	91133	hgsc.bcm.edu	36	18	6233349	6233349	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173464	exon7	c.A404G	p.D135G	.	.	.
DSEL	92126	hgsc.bcm.edu	36	18	63331285	63331285	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032160	exon2	c.C1571A	p.P524H	.	.	.
TMX3	54495	hgsc.bcm.edu	36	18	64518633	64518633	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019022	exon6	c.C381T	p.H127H	.	.	.
NETO1	81832	hgsc.bcm.edu	36	18	68602027	68602027	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138966	exon7	c.A734G	p.D245G	.	.	.
FBXO15	201456	hgsc.bcm.edu	36	18	69891814	69891814	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152676	exon10	c.C1167T	p.N389N	.	.	.
ANKRD12	23253	hgsc.bcm.edu	36	18	9245834	9245834	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015208	exon9	c.A2569G	p.K857E	.	.	.
KIAA1468	57614	hgsc.bcm.edu	36	18	58105674	58105676	+	In_Frame_Del	DEL	TGT	TGT	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	TGT	TGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020854	exon26	c.3364_3366del	p.1122_1122del	.	.	.
ZPLD1	131368	hgsc.bcm.edu	36	3	103665728	103665728	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175056	exon7	c.G752A	p.C251Y	.	.	.
ZPLD1	131368	hgsc.bcm.edu	36	3	103671941	103671941	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175056	exon9	c.G995T	p.R332I	.	.	.
MORC1	27136	hgsc.bcm.edu	36	3	110319536	110319536	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014429	exon1	c.A61G	p.N21D	.	.	.
SLC6A1	6529	hgsc.bcm.edu	36	3	11034010	11034010	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003042	exon3	c.C113T	p.A38V	.	.	.
BOC	91653	hgsc.bcm.edu	36	3	114480878	114480878	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033254	exon12	c.A1906C	p.I636L	.	.	.
DRD3	1814	hgsc.bcm.edu	36	3	115361331	115361331	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033663	exon3	c.C344T	p.T115I	.	.	.
GTF2E1	2960	hgsc.bcm.edu	36	3	121982691	121982691	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005513	exon5	c.C1004T	p.A335V	.	.	.
ARGFX	503582	hgsc.bcm.edu	36	3	122788022	122788022	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001012659	exon5	c.T833C	p.L278P	.	.	.
ILDR1	286676	hgsc.bcm.edu	36	3	123195483	123195483	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175924	exon6	c.C671T	p.P224L	.	.	.
CASR	846	hgsc.bcm.edu	36	3	123463619	123463619	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000388	exon4	c.G1047A	p.K349K	.	.	.
ADCY5	111	hgsc.bcm.edu	36	3	124501727	124501727	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_183357	exon15	c.G2830A	p.V944M	.	.	.
KALRN	8997	hgsc.bcm.edu	36	3	125640488	125640488	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003947	exon18	c.C3106T	p.R1036X	.	.	.
KALRN	8997	hgsc.bcm.edu	36	3	125834106	125834106	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024660	exon35	c.C5326T	p.R1776C	TRAD,kidney,NS,Substitution - Missense,-1	.	.
ITGB5	3693	hgsc.bcm.edu	36	3	125998285	125998285	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002213	exon10	c.C1333T	p.R445W	.	.	.
SLC41A3	54946	hgsc.bcm.edu	36	3	127208618	127208618	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017836	exon11	c.C1395T	p.F465F	.	.	.
PIK3R4	30849	hgsc.bcm.edu	36	3	131935433	131935433	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014602	exon4	c.G1099A	p.E367K	.	.	.
ACAD11	84129	hgsc.bcm.edu	36	3	133820174	133820174	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032169	exon11	c.G1408A	p.A470T	.	.	.
PPP2R3A	5523	hgsc.bcm.edu	36	3	137204625	137204625	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002718	exon2	c.C1595T	p.A532V	.	.	.
ARMC8	25852	hgsc.bcm.edu	36	3	139446735	139446735	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_213654	exon13	c.G1112A	p.R371H	.	.	.
TXNDC6	347736	hgsc.bcm.edu	36	3	139519704	139519704	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178130	exon6	c.C177T	p.C59C	.	.	.
MRAS	22808	hgsc.bcm.edu	36	3	139598895	139598895	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012219	exon3	c.G233A	p.R78Q	.	.	.
NMNAT3	349565	hgsc.bcm.edu	36	3	140762630	140762630	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178177	exon5	c.T560A	p.I187N	.	.	.
ACPL2	92370	hgsc.bcm.edu	36	3	142494616	142494616	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152282	exon8	c.G1322A	p.R441H	.	.	.
ATR	545	hgsc.bcm.edu	36	3	143757991	143757991	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184	exon9	c.C2002T	p.R668W	.	.	.
SLC9A9	285195	hgsc.bcm.edu	36	3	145049787	145049787	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173653	exon1	c.A68C	p.E23A	.	.	.
PLOD2	5352	hgsc.bcm.edu	36	3	147289141	147289141	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000935	exon9	c.T927C	p.P309P	.	.	.
PLSCR2	57047	hgsc.bcm.edu	36	3	147654495	147654495	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020359	exon6	c.C467T	p.A156V	.	.	.
AGTR1	185	hgsc.bcm.edu	36	3	149941931	149941931	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032049	exon3	c.G419A	p.R140H	.	.	.
NR2C2	7182	hgsc.bcm.edu	36	3	15030182	15030182	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003298	exon4	c.T212C	p.I71T	.	.	.
PLD1	5337	hgsc.bcm.edu	36	3	172914476	172914476	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130081	exon9	c.C812T	p.A271V	.	.	.
ECT2	1894	hgsc.bcm.edu	36	3	173960682	173960682	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018098	exon5	c.C526T	p.R176X	.	.	.
SPATA16	83893	hgsc.bcm.edu	36	3	174220024	174220024	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031955	exon4	c.A794G	p.H265R	.	.	.
MCCC1	56922	hgsc.bcm.edu	36	3	184271748	184271748	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020166	exon6	c.G583A	p.A195T	.	.	.
LEPREL1	55214	hgsc.bcm.edu	36	3	191194597	191194597	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134418	exon3	c.G260C	p.G87A	.	.	.
ATP13A4	84239	hgsc.bcm.edu	36	3	194638982	194638982	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032279	exon23	c.T2648C	p.I883T	.	.	.
LMLN	89782	hgsc.bcm.edu	36	3	199230572	199230572	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033029	exon12	c.G1284T	p.Q428H	.	.	.
FBXL2	25827	hgsc.bcm.edu	36	3	33390152	33390152	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012157	exon8	c.G534A	p.V178V	.	.	.
EXOG	9941	hgsc.bcm.edu	36	3	38523411	38523411	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145464	exon4	c.C443A	p.P148H	.	.	.
VIPR1	7433	hgsc.bcm.edu	36	3	42551532	42551532	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004624	exon11	c.G1072A	p.A358T	.	.	.
DAG1	1605	hgsc.bcm.edu	36	3	49543411	49543411	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004393	exon3	c.G463A	p.E155K	.	.	.
BSN	8927	hgsc.bcm.edu	36	3	49668555	49668555	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003458	exon5	c.C6562T	p.R2188C	.	.	.
GRM2	2912	hgsc.bcm.edu	36	3	51724521	51724521	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000839	exon4	c.C1692T	p.G564G	.	.	.
ITIH1	3697	hgsc.bcm.edu	36	3	52791067	52791067	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166434	exon5	c.C333T	p.N111N	.	.	.
CACNA1D	776	hgsc.bcm.edu	36	3	53506464	53506464	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128839	exon2	c.G313A	p.A105T	.	.	.
ARF4	378	hgsc.bcm.edu	36	3	57536325	57536325	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001660	exon5	c.G446A	p.R149H	.	.	.
LRIG1	26018	hgsc.bcm.edu	36	3	66543296	66543296	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015541	exon7	c.C882T	p.S294S	.	.	.
OXTR	5021	hgsc.bcm.edu	36	3	8769786	8769786	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000916	exon4	c.C1047T	p.A349A	.	.	.
EPHA3	2042	hgsc.bcm.edu	36	3	89342230	89342230	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005233	exon3	c.G684T	p.G228G	.	.	.
SRGAP3	9901	hgsc.bcm.edu	36	3	9075070	9075070	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014850	exon7	c.C888T	p.H296H	.	.	.
LHFPL4	375323	hgsc.bcm.edu	36	3	9522669	9522669	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198560	exon3	c.C625T	p.L209F	.	.	.
NSUN3	63899	hgsc.bcm.edu	36	3	95285976	95285976	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022072	exon3	c.C458T	p.A153V	.	.	.
BRPF1	7862	hgsc.bcm.edu	36	3	9751270	9751270	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004634	exon2	c.G446A	p.G149D	.	.	.
ANO4	121601	hgsc.bcm.edu	36	12	100044974	100044974	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178826	exon26	c.C2758T	p.P920S	.	.	.
MYBPC1	4604	hgsc.bcm.edu	36	12	100564759	100564759	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002465	exon13	c.C1053T	p.A351A	.	.	.
NUP37	79023	hgsc.bcm.edu	36	12	100995274	100995274	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024057	exon6	c.C678T	p.A226A	.	.	.
TRPV4	59341	hgsc.bcm.edu	36	12	108706574	108706574	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021625	exon15	c.C2388T	p.N796N	.	.	.
ANAPC7	51434	hgsc.bcm.edu	36	12	109299745	109299745	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001137664	exon9	c.A1295G	p.N432S	.	.	.
DTX1	1840	hgsc.bcm.edu	36	12	112017565	112017565	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004416	exon8	c.G1601A	p.R534H	.	.	.
DDX54	79039	hgsc.bcm.edu	36	12	112085185	112085185	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024072	exon17	c.C2130T	p.G710G	.	.	.
IQSEC3	440073	hgsc.bcm.edu	36	12	150582	150582	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001170738	exon13	c.G3108A	p.T1036T	.	.	.
EPS8	2059	hgsc.bcm.edu	36	12	15667403	15667403	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004447	exon20	c.G2311A	p.A771T	.	.	.
EPS8	2059	hgsc.bcm.edu	36	12	15706256	15706256	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004447	exon9	c.A781G	p.M261V	.	.	.
PTHLH	5744	hgsc.bcm.edu	36	12	28013665	28013665	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002820	exon3	c.C30T	p.S10S	.	.	.
CCDC91	55297	hgsc.bcm.edu	36	12	28303568	28303568	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018318	exon2	c.C35T	p.A12V	.	.	.
C12orf35	55196	hgsc.bcm.edu	36	12	32025607	32025607	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018169	exon4	c.G451A	p.A151T	.	.	.
C12orf35	55196	hgsc.bcm.edu	36	12	32028321	32028321	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018169	exon4	c.G3165A	p.L1055L	.	.	.
C1QL4	338761	hgsc.bcm.edu	36	12	48013279	48013279	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008223	exon2	c.G542A	p.R181Q	.	.	.
ACVRL1	94	hgsc.bcm.edu	36	12	50595435	50595435	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001077401	exon6	c.C932T	p.A311V	.	.	.
KRT72	140807	hgsc.bcm.edu	36	12	51267883	51267883	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146226	exon6	c.C983T	p.A328V	.	.	.
ZC3H10	84872	hgsc.bcm.edu	36	12	54801175	54801175	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032786	exon3	c.G562A	p.D188N	.	.	.
LRP1	4035	hgsc.bcm.edu	36	12	55842985	55842985	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002332	exon15	c.G2482A	p.A828T	.	.	.
ARHGAP9	64333	hgsc.bcm.edu	36	12	56157215	56157215	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080156	exon3	c.T309C	p.L103L	.	.	.
KIF5A	3798	hgsc.bcm.edu	36	12	56255790	56255790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004984	exon17	c.C2006T	p.A669V	.	.	.
PTMS	5763	hgsc.bcm.edu	36	12	6749591	6749591	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002824	exon4	c.A204G	p.E68E	.	.	.
CLSTN3	9746	hgsc.bcm.edu	36	12	7192974	7192974	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014718	exon13	c.G1987A	p.G663S	.	.	.
GLIPR1	11010	hgsc.bcm.edu	36	12	74162042	74162042	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006851	exon2	c.C336T	p.S112S	.	.	.
ACSS3	79611	hgsc.bcm.edu	36	12	80137953	80137953	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024560	exon11	c.T1481C	p.L494P	.	.	.
PZP	5858	hgsc.bcm.edu	36	12	9236098	9236098	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002864	exon13	c.G1504A	p.V502I	.	.	.
PLXNC1	10154	hgsc.bcm.edu	36	12	93165876	93165876	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005761	exon13	c.C2455T	p.R819C	.	.	.
TMCC3	57458	hgsc.bcm.edu	36	12	93496405	93496405	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020698	exon3	c.C1027T	p.L343L	.	.	.
KLRB1	3820	hgsc.bcm.edu	36	12	9642008	9642008	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002258	exon5	c.T431C	p.L144P	.	.	.
APAF1	317	hgsc.bcm.edu	36	12	97595352	97595352	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013229	exon13	c.G1779A	p.T593T	.	.	.
OR6C75	390323	hgsc.bcm.edu	36	12	54045753	54045753	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005497	exon1	c.592delT	p.F198fs	.	.	.
HERC2	8924	hgsc.bcm.edu	36	15	26193663	26193663	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004667	exon6	c.G626A	p.R209H	.	.	.
APBA2	321	hgsc.bcm.edu	36	15	27133997	27133997	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005503	exon3	c.C618T	p.G206G	.	.	.
C15orf55	256646	hgsc.bcm.edu	36	15	32435394	32435394	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175741	exon7	c.C1809T	p.G603G	.	.	.
DISP2	85455	hgsc.bcm.edu	36	15	38446692	38446692	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033510	exon8	c.C1087T	p.R363C	.	.	.
EHD4	30844	hgsc.bcm.edu	36	15	40033312	40033312	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139265	exon2	c.G355A	p.V119M	.	.	.
TMEM87A	25963	hgsc.bcm.edu	36	15	40312719	40312719	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015497	exon11	c.T1046C	p.V349A	.	.	.
TP53BP1	7158	hgsc.bcm.edu	36	15	41535587	41535587	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005657	exon12	c.G2496A	p.Q832Q	.	.	.
MYEF2	50804	hgsc.bcm.edu	36	15	46245494	46245494	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016132	exon5	c.A453C	p.E151D	.	.	.
DMXL2	23312	hgsc.bcm.edu	36	15	49579640	49579640	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015263	exon18	c.C3073A	p.R1025S	.	.	.
ALDH1A2	8854	hgsc.bcm.edu	36	15	56043421	56043421	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170697	exon7	c.G752A	p.R251H	.	.	.
KIF23	9493	hgsc.bcm.edu	36	15	67515608	67515608	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004856	exon13	c.G1350A	p.T450T	.	.	.
UBL7	84993	hgsc.bcm.edu	36	15	72538187	72538187	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201265	exon2	c.G75A	p.L25L	.	.	.
CLK3	1198	hgsc.bcm.edu	36	15	72707998	72707998	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130028	exon11	c.A1570G	p.T524A	.	.	.
CIB2	10518	hgsc.bcm.edu	36	15	76185140	76185140	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006383	exon5	c.C538A	p.L180I	.	.	.
PDE8A	5151	hgsc.bcm.edu	36	15	83433618	83433618	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002605	exon7	c.A681C	p.A227A	.	.	.
NTRK3	4916	hgsc.bcm.edu	36	15	86273561	86273561	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002530	exon16	c.T1998C	p.G666G	.	.	.
IQGAP1	8826	hgsc.bcm.edu	36	15	88773877	88773877	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003870	exon4	c.C365T	p.A122V	.	.	.
VPS33B	26276	hgsc.bcm.edu	36	15	89362080	89362080	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018668	exon2	c.A136G	p.M46V	.	.	.
NR2F2	7026	hgsc.bcm.edu	36	15	94676660	94676660	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021005	exon1	c.C322T	p.R108W	.	.	.
PSMA4	5685	hgsc.bcm.edu	36	15	76626003	76626005	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	AAG	AAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001102668	exon7	c.326_328del	p.109_110del	.	.	.
MAN2A2	4122	hgsc.bcm.edu	36	15	89249884	89249886	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	CTC	CTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006122	exon3	c.462_464del	p.154_155del	.	.	.
PPA2	27068	hgsc.bcm.edu	36	4	106564803	106564803	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006903	exon6	c.T567C	p.H189H	.	.	.
DKK2	27123	hgsc.bcm.edu	36	4	108064646	108064646	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014421	exon4	c.G694A	p.D232N	.	.	.
METTL14	57721	hgsc.bcm.edu	36	4	119832178	119832178	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020961	exon4	c.A287G	p.E96G	.	.	.
FAT4	79633	hgsc.bcm.edu	36	4	126593234	126593234	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024582	exon9	c.C11613G	p.C3871W	.	.	.
INTU	27152	hgsc.bcm.edu	36	4	128784493	128784493	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015693	exon2	c.G514A	p.V172I	.	.	.
MAEA	10296	hgsc.bcm.edu	36	4	1295803	1295803	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001017405	exon2	c.G106A	p.A36T	.	.	.
MAEA	10296	hgsc.bcm.edu	36	4	1306280	1306280	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001017405	exon4	c.C568T	p.R190W	.	.	.
MAEA	10296	hgsc.bcm.edu	36	4	1322342	1322342	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001017405	exon8	c.C1032T	p.G344G	.	.	.
CCRN4L	25819	hgsc.bcm.edu	36	4	140185665	140185665	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012118	exon3	c.C883T	p.R295W	.	.	.
GAB1	2549	hgsc.bcm.edu	36	4	144579099	144579099	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207123	exon4	c.G1091A	p.R364H	.	.	.
ZNF827	152485	hgsc.bcm.edu	36	4	147026687	147026687	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178835	exon4	c.G1340A	p.S447N	.	.	.
PRMT10	90826	hgsc.bcm.edu	36	4	148811267	148811267	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138364	exon5	c.G821A	p.W274X	.	.	.
NR3C2	4306	hgsc.bcm.edu	36	4	149335430	149335430	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166104	exon4	c.A1931G	p.D644G	.	.	.
SH3D19	152503	hgsc.bcm.edu	36	4	152273832	152273832	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001009555	exon17	c.A1722G	p.S574S	.	.	.
FBXW7	55294	hgsc.bcm.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018315	exon8	c.G1154A	p.R385H	FBXW7,large_intestine,NS,Substitution - Missense,0	.	.
SPOCK3	50859	hgsc.bcm.edu	36	4	167892662	167892662	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016950	exon12	c.T1296A	p.H432Q	.	.	.
KLKB1	3818	hgsc.bcm.edu	36	4	187409692	187409692	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000892	exon9	c.T926C	p.V309A	.	.	.
WHSC2	7469	hgsc.bcm.edu	36	4	1959505	1959505	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005663	exon4	c.G605A	p.R202Q	.	.	.
PPARGC1A	10891	hgsc.bcm.edu	36	4	23439140	23439140	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013261	exon5	c.G738A	p.S246S	.	.	.
RGS12	6002	hgsc.bcm.edu	36	4	3288181	3288181	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002926	exon2	c.G486T	p.E162D	.	.	.
N4BP2	55728	hgsc.bcm.edu	36	4	39822736	39822736	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018177	exon16	c.G5064T	p.Q1688H	.	.	.
RHOH	399	hgsc.bcm.edu	36	4	39921607	39921607	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004310	exon3	c.G206A	p.R69Q	.	.	.
WDR21B	285429	hgsc.bcm.edu	36	4	41679373	41679373	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001029955	exon1	c.T807C	p.H269H	.	.	.
WFS1	7466	hgsc.bcm.edu	36	4	6353575	6353575	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145853	exon8	c.C1152T	p.F384F	.	.	.
PPEF2	5470	hgsc.bcm.edu	36	4	77028446	77028446	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006239	exon6	c.G477A	p.Q159Q	.	.	.
WDFY3	23001	hgsc.bcm.edu	36	4	85830780	85830780	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014991	exon61	c.A9266G	p.N3089S	.	.	.
PDLIM5	10611	hgsc.bcm.edu	36	4	95794689	95794689	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001011513	exon10	c.G1012A	p.A338T	.	.	.
CLCN4	1183	hgsc.bcm.edu	36	X	10126060	10126060	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001830	exon6	c.C514T	p.R172C	.	.	.
NGFRAP1	27018	hgsc.bcm.edu	36	X	102519138	102519138	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206917	exon3	c.C33T	p.D11D	.	.	.
IRS4	8471	hgsc.bcm.edu	36	X	107862945	107862945	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003604	exon1	c.G3286A	p.A1096T	.	.	.
PAK3	5063	hgsc.bcm.edu	36	X	110293583	110293583	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128166	exon8	c.G738T	p.M246I	.	.	.
AMOT	154796	hgsc.bcm.edu	36	X	111920665	111920665	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133265	exon8	c.G701A	p.R234H	.	.	.
WDR40B	139170	hgsc.bcm.edu	36	X	125513864	125513864	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178470	exon1	c.C409T	p.R137W	.	.	.
FRMPD4	9758	hgsc.bcm.edu	36	X	12635643	12635643	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014728	exon13	c.C1422T	p.S474S	.	.	.
BCORL1	63035	hgsc.bcm.edu	36	X	128976581	128976581	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021946	exon3	c.G2152A	p.V718M	.	.	.
IGSF1	3547	hgsc.bcm.edu	36	X	130236360	130236360	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001170962	exon17	c.C3618T	p.N1206N	.	.	.
VGLL1	51442	hgsc.bcm.edu	36	X	135458448	135458448	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016267	exon3	c.G249A	p.S83S	.	.	.
FMR1	2332	hgsc.bcm.edu	36	X	146832517	146832517	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001185082	exon13	c.C1387T	p.R463C	.	.	.
AFF2	2334	hgsc.bcm.edu	36	X	147867188	147867188	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002025	exon17	c.C3446T	p.S1149L	.	.	.
MTMR1	8776	hgsc.bcm.edu	36	X	149674850	149674850	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003828	exon14	c.C1688T	p.S563L	.	.	.
NHS	4810	hgsc.bcm.edu	36	X	17660065	17660065	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136024	exon9	c.A3985G	p.N1329D	.	.	.
ZFX	7543	hgsc.bcm.edu	36	X	24100815	24100815	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001178095	exon2	c.C35A	p.P12Q	.	.	.
GYG2	8908	hgsc.bcm.edu	36	X	2805258	2805258	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079855	exon10	c.C1161T	p.V387V	.	.	.
MAGEB1	4112	hgsc.bcm.edu	36	X	30178823	30178823	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002363	exon4	c.A292G	p.T98A	.	.	.
DMD	1756	hgsc.bcm.edu	36	X	31062162	31062162	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004015	exon16	c.C1788A	p.N596K	.	.	.
MID1IP1	58526	hgsc.bcm.edu	36	X	38549164	38549164	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001098791	exon2	c.C21A	p.T7T	.	.	.
HDAC6	10013	hgsc.bcm.edu	36	X	48546553	48546553	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006044	exon4	c.C297T	p.C99C	.	.	.
CACNA1F	778	hgsc.bcm.edu	36	X	48965962	48965962	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005183	exon17	c.G2284A	p.A762T	.	.	.
PPP1R3F	89801	hgsc.bcm.edu	36	X	49029986	49029986	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033215	exon4	c.G1890T	p.V630V	.	.	.
CCNB3	85417	hgsc.bcm.edu	36	X	50068424	50068424	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033031	exon5	c.T515C	p.I172T	.	.	.
BMP15	9210	hgsc.bcm.edu	36	X	50675778	50675778	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005448	exon2	c.C610T	p.R204X	.	.	.
KDM5C	8242	hgsc.bcm.edu	36	X	53242776	53242776	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004187	exon19	c.A2798C	p.E933A	.	.	.
HUWE1	10075	hgsc.bcm.edu	36	X	53648332	53648332	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031407	exon26	c.A2685G	p.A895A	.	.	.
MTMR8	55613	hgsc.bcm.edu	36	X	63531954	63531954	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017677	exon1	c.G15A	p.T5T	.	.	.
LAS1L	81887	hgsc.bcm.edu	36	X	64660831	64660831	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031206	exon10	c.C1130T	p.P377L	.	.	.
FAM155B	27112	hgsc.bcm.edu	36	X	68642447	68642447	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015686	exon1	c.C597T	p.C199C	.	.	.
ATRX	546	hgsc.bcm.edu	36	X	76823759	76823759	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000489	exon9	c.T3645C	p.S1215S	.	.	.
KAL1	3730	hgsc.bcm.edu	36	X	8464844	8464844	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000216	exon11	c.G1589A	p.S530N	.	.	.
SYTL4	94121	hgsc.bcm.edu	36	X	99830088	99830088	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001129896	exon11	c.A921G	p.E307E	.	.	.
CHST10	9486	hgsc.bcm.edu	36	2	100378438	100378438	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004854	exon6	c.G498A	p.R166R	.	.	.
MFSD9	84804	hgsc.bcm.edu	36	2	102701787	102701787	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032718	exon6	c.C949T	p.R317W	.	.	.
DPP10	57628	hgsc.bcm.edu	36	2	116220167	116220167	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001178036	exon11	c.T738G	p.V246V	.	.	.
TFCP2L1	29842	hgsc.bcm.edu	36	2	121713681	121713681	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014553	exon8	c.C783T	p.P261P	.	.	.
TFCP2L1	29842	hgsc.bcm.edu	36	2	121720972	121720972	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014553	exon6	c.C549T	p.G183G	.	.	.
BIN1	274	hgsc.bcm.edu	36	2	127527963	127527963	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139343	exon13	c.G1227A	p.T409T	.	.	.
SAP130	79595	hgsc.bcm.edu	36	2	128488901	128488901	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145928	exon5	c.C643T	p.R215C	.	.	.
DDX1	1653	hgsc.bcm.edu	36	2	15664792	15664792	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004939	exon13	c.C860T	p.P287L	.	.	.
NR4A2	4929	hgsc.bcm.edu	36	2	156890611	156890611	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006186	exon8	c.G1688A	p.R563H	.	.	.
LY75	4065	hgsc.bcm.edu	36	2	160371761	160371761	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198759	exon34	c.T4959G	p.G1653G	.	.	.
ITGB6	3694	hgsc.bcm.edu	36	2	160760129	160760129	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000888	exon4	c.G590A	p.C197Y	.	.	.
TBR1	10716	hgsc.bcm.edu	36	2	161981565	161981565	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006593	exon1	c.C398T	p.A133V	.	.	.
DPP4	1803	hgsc.bcm.edu	36	2	162598316	162598316	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001935	exon10	c.C868T	p.P290S	.	.	.
COBLL1	22837	hgsc.bcm.edu	36	2	165259431	165259431	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014900	exon12	c.G2831T	p.R944M	.	.	.
SCN2A	6326	hgsc.bcm.edu	36	2	165888102	165888102	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040143	exon11	c.G1862A	p.R621H	.	.	.
CSRNP3	80034	hgsc.bcm.edu	36	2	166241191	166241191	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172173	exon6	c.C532T	p.P178S	.	.	.
DHRS9	10170	hgsc.bcm.edu	36	2	169656663	169656663	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142270	exon5	c.G690A	p.L230L	.	.	.
SP3	6670	hgsc.bcm.edu	36	2	174486145	174486145	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172712	exon6	c.G1919A	p.R640H	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179319606	179319606	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133379	exon46	c.C15766T	p.H5256Y	.	.	.
NT5C1B	93034	hgsc.bcm.edu	36	2	18608697	18608697	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033253	exon9	c.A1499G	p.D500G	.	.	.
ZSWIM2	151112	hgsc.bcm.edu	36	2	187421956	187421956	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182521	exon1	c.G147A	p.P49P	.	.	.
CALCRL	10203	hgsc.bcm.edu	36	2	187953652	187953652	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005795	exon6	c.T292A	p.S98T	.	.	.
COL3A1	1281	hgsc.bcm.edu	36	2	189574532	189574532	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000090	exon34	c.C2363T	p.P788L	.	.	.
COL3A1	1281	hgsc.bcm.edu	36	2	189579354	189579354	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000090	exon43	c.C3132T	p.G1044G	.	.	.
KCTD18	130535	hgsc.bcm.edu	36	2	201077829	201077829	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152387	exon3	c.G259A	p.A87T	.	.	.
CLK1	1195	hgsc.bcm.edu	36	2	201434388	201434388	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001162407	exon3	c.C334T	p.R112X	.	.	.
ICA1L	130026	hgsc.bcm.edu	36	2	203388935	203388935	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138468	exon8	c.T727C	p.S243P	.	.	.
GPR1	2825	hgsc.bcm.edu	36	2	206749924	206749924	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001098199	exon3	c.C293T	p.A98V	.	.	.
BARD1	580	hgsc.bcm.edu	36	2	215342218	215342218	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000465	exon5	c.G1378A	p.A460T	.	.	.
FN1	2335	hgsc.bcm.edu	36	2	215992290	215992290	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_212476	exon12	c.T1739G	p.V580G	.	.	.
XRCC5	7520	hgsc.bcm.edu	36	2	216711067	216711067	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021141	exon12	c.A1262G	p.Y421C	.	.	.
TNP1	7141	hgsc.bcm.edu	36	2	217432649	217432649	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003284	exon2	c.C154T	p.R52C	.	.	.
TNS1	7145	hgsc.bcm.edu	36	2	218386711	218386711	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022648	exon26	c.C4491T	p.Y1497Y	.	.	.
GLB1L	79411	hgsc.bcm.edu	36	2	219810045	219810045	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024506	exon17	c.G1958A	p.G653E	.	.	.
PAX3	5077	hgsc.bcm.edu	36	2	222868495	222868495	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000438	exon3	c.G447A	p.P149P	.	.	.
SPHKAP	80309	hgsc.bcm.edu	36	2	228592673	228592673	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142644	exon7	c.A1141G	p.R381G	.	.	.
PSMD1	5707	hgsc.bcm.edu	36	2	231726593	231726593	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002807	exon19	c.C2187T	p.G729G	.	.	.
UGT1A1	54658	hgsc.bcm.edu	36	2	234333813	234333813	+	Silent	SNP	C	C	T	rs34526305	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000463	exon1	c.C141T	p.I47I	.	.	.
HDAC4	9759	hgsc.bcm.edu	36	2	239655188	239655188	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006037	exon23	c.T2788A	p.S930T	.	.	.
ANO7	50636	hgsc.bcm.edu	36	2	241811818	241811818	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001891	exon23	c.C2643G	p.I881M	.	.	.
FARP2	9855	hgsc.bcm.edu	36	2	242052058	242052058	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014808	exon17	c.G1883A	p.R628H	.	.	.
CENPO	79172	hgsc.bcm.edu	36	2	24876176	24876176	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199803	exon2	c.C157T	p.R53X	.	.	.
C2orf39	92749	hgsc.bcm.edu	36	2	26521283	26521283	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145038	exon10	c.C1359T	p.S453S	.	.	.
BRE	9577	hgsc.bcm.edu	36	2	28374834	28374834	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199193	exon12	c.G1060A	p.D354N	.	.	.
ALK	238	hgsc.bcm.edu	36	2	29771383	29771383	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004304	exon3	c.T789C	p.G263G	.	.	.
NLRC4	58484	hgsc.bcm.edu	36	2	32329690	32329690	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021209	exon4	c.C747A	p.G249G	.	.	.
CRIM1	51232	hgsc.bcm.edu	36	2	36598188	36598188	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016441	exon12	c.A2205G	p.T735T	.	.	.
QPCT	25797	hgsc.bcm.edu	36	2	37448013	37448013	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012413	exon4	c.G681A	p.P227P	.	.	.
OXER1	165140	hgsc.bcm.edu	36	2	42844382	42844382	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_148962	exon1	c.C442T	p.R148C	.	.	.
PLEKHH2	130271	hgsc.bcm.edu	36	2	43807005	43807005	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172069	exon17	c.C2632T	p.R878X	.	.	.
PPM1B	5495	hgsc.bcm.edu	36	2	44282098	44282098	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002706	exon2	c.A256G	p.R86G	.	.	.
C2orf34	79823	hgsc.bcm.edu	36	2	44834760	44834760	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024766	exon9	c.G761T	p.R254M	.	.	.
EPAS1	2034	hgsc.bcm.edu	36	2	46441542	46441542	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001430	exon6	c.G588A	p.T196T	.	.	.
TTC7A	57217	hgsc.bcm.edu	36	2	47037529	47037529	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020458	exon3	c.C396T	p.Y132Y	.	.	.
FSHR	2492	hgsc.bcm.edu	36	2	49063746	49063746	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181446	exon6	c.T510C	p.D170D	.	.	.
CCDC88A	55704	hgsc.bcm.edu	36	2	55403236	55403236	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135597	exon18	c.C3091T	p.R1031X	.	.	.
CCDC88A	55704	hgsc.bcm.edu	36	2	55415341	55415341	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135597	exon15	c.G2120A	p.R707Q	.	.	.
CNRIP1	25927	hgsc.bcm.edu	36	2	68397832	68397832	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015463	exon2	c.G291A	p.T97T	.	.	.
ADD2	119	hgsc.bcm.edu	36	2	70744275	70744275	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001185054	exon16	c.G1971A	p.T657T	.	.	.
ACTG2	72	hgsc.bcm.edu	36	2	73995442	73995442	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001615	exon7	c.G741T	p.Q247H	.	.	.
SLC4A5	57835	hgsc.bcm.edu	36	2	74320150	74320150	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021196	exon16	c.A2139G	p.T713T	.	.	.
SLC4A5	57835	hgsc.bcm.edu	36	2	74330995	74330995	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021196	exon12	c.G1636A	p.A546T	.	.	.
REG1B	5968	hgsc.bcm.edu	36	2	79167541	79167541	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006507	exon3	c.C88T	p.P30S	.	.	.
SUCLG1	8802	hgsc.bcm.edu	36	2	84522038	84522038	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003849	exon4	c.T375G	p.A125A	.	.	.
VAMP5	10791	hgsc.bcm.edu	36	2	85672377	85672377	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006634	exon2	c.C22T	p.R8W	.	.	.
HDLBP	3069	hgsc.bcm.edu	36	2	241843570	241843571	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	TC	TC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005336	exon8	c.971_972del	p.324_324del	.	.	.
EPCAM	4072	hgsc.bcm.edu	36	2	47460602	47460604	+	In_Frame_Del	DEL	TTG	TTG	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	TTG	TTG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002354	exon7	c.848_850del	p.283_284del	.	.	.
INVS	27130	hgsc.bcm.edu	36	9	102100101	102100101	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_183245	exon17	c.C2569T	p.R857C	.	.	.
ALDOB	229	hgsc.bcm.edu	36	9	103229585	103229585	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000035	exon5	c.G540T	p.Q180H	.	.	.
UGCG	7357	hgsc.bcm.edu	36	9	113731670	113731670	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003358	exon6	c.G628T	p.G210X	.	.	.
TNC	3371	hgsc.bcm.edu	36	9	116888134	116888134	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002160	exon3	c.A1697G	p.D566G	.	.	.
PTGS1	5742	hgsc.bcm.edu	36	9	124183503	124183503	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000962	exon6	c.G529A	p.A177T	.	.	.
RABEPK	10244	hgsc.bcm.edu	36	9	127034844	127034844	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005833	exon7	c.A825G	p.T275T	.	.	.
ZBTB43	23099	hgsc.bcm.edu	36	9	128635492	128635492	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135776	exon2	c.G883A	p.E295K	.	.	.
ANGPTL2	23452	hgsc.bcm.edu	36	9	128895879	128895879	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012098	exon3	c.G965A	p.R322H	.	.	.
DNM1	1759	hgsc.bcm.edu	36	9	130026407	130026407	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005336	exon10	c.A1253G	p.K418R	.	.	.
CRAT	1384	hgsc.bcm.edu	36	9	130909960	130909960	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000755	exon2	c.G245A	p.R82H	.	.	.
TOR1B	27348	hgsc.bcm.edu	36	9	131609410	131609410	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014506	exon3	c.C588T	p.Y196Y	.	.	.
TOR1A	1861	hgsc.bcm.edu	36	9	131624730	131624730	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000113	exon2	c.T395G	p.F132C	.	.	.
C9orf171	389799	hgsc.bcm.edu	36	9	134275627	134275627	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207417	exon1	c.C148T	p.L50L	.	.	.
MED22	6837	hgsc.bcm.edu	36	9	135200924	135200924	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181491	exon4	c.C290T	p.A97V	.	.	.
DBH	1621	hgsc.bcm.edu	36	9	135498418	135498418	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000787	exon4	c.C807T	p.C269C	.	.	.
QSOX2	169714	hgsc.bcm.edu	36	9	138250460	138250460	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181701	exon8	c.G972A	p.T324T	.	.	.
BNC2	54796	hgsc.bcm.edu	36	9	16426034	16426034	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017637	exon6	c.C2158T	p.R720W	.	.	.
IFNA2	3440	hgsc.bcm.edu	36	9	21374943	21374943	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000605	exon1	c.C386T	p.T129I	.	.	.
TEK	7010	hgsc.bcm.edu	36	9	27170341	27170341	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000459	exon7	c.G1005A	p.W335X	.	.	.
RFX3	5991	hgsc.bcm.edu	36	9	3215114	3215114	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_134428	exon18	c.C2178T	p.S726S	.	.	.
NDUFB6	4712	hgsc.bcm.edu	36	9	32562964	32562964	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002493	exon1	c.A95T	p.E32V	.	.	.
TMEM215	401498	hgsc.bcm.edu	36	9	32774515	32774515	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_212558	exon2	c.G334A	p.A112T	.	.	.
NFX1	4799	hgsc.bcm.edu	36	9	33284903	33284903	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_147134	exon2	c.G511C	p.A171P	.	.	.
C9orf24	84688	hgsc.bcm.edu	36	9	34387573	34387573	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032596	exon1	c.G59T	p.R20M	.	.	.
DNAI1	27019	hgsc.bcm.edu	36	9	34504692	34504692	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012144	exon18	c.G1773A	p.A591A	.	.	.
GALT	2592	hgsc.bcm.edu	36	9	34638855	34638855	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000155	exon8	c.C784T	p.R262W	.	.	.
UNC13B	10497	hgsc.bcm.edu	36	9	35386551	35386551	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006377	exon26	c.A3140G	p.Y1047C	.	.	.
CCIN	881	hgsc.bcm.edu	36	9	36160133	36160133	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005893	exon1	c.C634T	p.R212W	.	.	.
MELK	9833	hgsc.bcm.edu	36	9	36661109	36661109	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014791	exon16	c.G1620A	p.V540V	.	.	.
CD274	29126	hgsc.bcm.edu	36	9	5453028	5453028	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014143	exon4	c.C589G	p.L197V	.	.	.
TMEM2	23670	hgsc.bcm.edu	36	9	73537161	73537161	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013390	exon7	c.G1489A	p.E497K	.	.	.
RMI1	80010	hgsc.bcm.edu	36	9	85805814	85805814	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024945	exon3	c.T93C	p.I31I	.	.	.
SEMA4D	10507	hgsc.bcm.edu	36	9	91193638	91193638	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142287	exon12	c.C919T	p.P307S	.	.	.
BICD2	23299	hgsc.bcm.edu	36	9	94531159	94531159	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015250	exon2	c.C421T	p.R141C	.	.	.
FAM120A	23196	hgsc.bcm.edu	36	9	95360022	95360022	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014612	exon14	c.G2577A	p.P859P	.	.	.
FGF14	2259	hgsc.bcm.edu	36	13	101366821	101366821	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004115	exon1	c.G176A	p.R59H	.	.	.
LIG4	3981	hgsc.bcm.edu	36	13	107659175	107659175	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002312	exon2	c.C2443T	p.R815C	.	.	.
TMCO3	55002	hgsc.bcm.edu	36	13	113250737	113250737	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017905	exon12	c.G1889A	p.R630Q	.	.	.
ATP4B	496	hgsc.bcm.edu	36	13	113351824	113351824	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000705	exon7	c.G742A	p.A248T	.	.	.
PARP4	143	hgsc.bcm.edu	36	13	23973782	23973782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006437	exon3	c.C323T	p.A108V	.	.	.
ATP12A	479	hgsc.bcm.edu	36	13	24163211	24163211	+	Silent	SNP	G	G	A	rs61739266	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001185085	exon8	c.G909A	p.T303T	.	.	.
ATP12A	479	hgsc.bcm.edu	36	13	24164668	24164668	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001185085	exon9	c.G1188A	p.S396S	.	.	.
DCLK1	9201	hgsc.bcm.edu	36	13	35598166	35598166	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004734	exon2	c.G109A	p.A37T	.	.	.
POSTN	10631	hgsc.bcm.edu	36	13	37060097	37060097	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135934	exon5	c.C468T	p.N156N	.	.	.
ELF1	1997	hgsc.bcm.edu	36	13	40405720	40405720	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172373	exon9	c.G1701T	p.Q567H	.	.	.
OLFM4	10562	hgsc.bcm.edu	36	13	52501150	52501150	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006418	exon1	c.T178C	p.L60L	.	.	.
PCDH9	5101	hgsc.bcm.edu	36	13	66103464	66103464	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020403	exon3	c.G3117A	p.P1039P	.	.	.
LMO7	4008	hgsc.bcm.edu	36	13	75199191	75199191	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005358	exon4	c.G322A	p.V108I	.	.	.
MYCBP2	23077	hgsc.bcm.edu	36	13	76611364	76611364	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015057	exon52	c.C7627G	p.H2543D	.	.	.
GOT1	2805	hgsc.bcm.edu	36	10	101153576	101153576	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002079	exon6	c.G688A	p.A230T	.	.	.
SEMA4G	57715	hgsc.bcm.edu	36	10	102728090	102728090	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017893	exon5	c.A484G	p.K162E	.	.	.
SEMA4G	57715	hgsc.bcm.edu	36	10	102728335	102728335	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017893	exon6	c.C591T	p.S197S	.	.	.
NT5C2	22978	hgsc.bcm.edu	36	10	104924664	104924664	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012229	exon3	c.T42C	p.D14D	.	.	.
INA	9118	hgsc.bcm.edu	36	10	105038210	105038210	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032727	exon3	c.C1294A	p.L432I	.	.	.
TCF7L2	6934	hgsc.bcm.edu	36	10	114915310	114915310	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146284	exon13	c.A1295G	p.K432R	.	.	.
PDZD8	118987	hgsc.bcm.edu	36	10	119033958	119033958	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173791	exon5	c.C2276T	p.A759V	.	.	.
UPF2	26019	hgsc.bcm.edu	36	10	12041295	12041295	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080599	exon12	c.G2251A	p.A751T	.	.	.
SEC23IP	11196	hgsc.bcm.edu	36	10	121683214	121683214	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007190	exon18	c.T2948C	p.L983P	.	.	.
BUB3	9184	hgsc.bcm.edu	36	10	124912201	124912201	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001007793	exon7	c.G838A	p.A280T	.	.	.
CPXM2	119587	hgsc.bcm.edu	36	10	125496371	125496371	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198148	exon14	c.G2170A	p.A724T	.	.	.
CAMK1D	57118	hgsc.bcm.edu	36	10	12635351	12635351	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020397	exon2	c.G214A	p.V72I	.	.	.
C10orf90	118611	hgsc.bcm.edu	36	10	128182670	128182670	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004298	exon3	c.T1089C	p.S363S	.	.	.
MKI67	4288	hgsc.bcm.edu	36	10	129793319	129793319	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145966	exon12	c.A5695G	p.T1899A	.	.	.
FAM107B	83641	hgsc.bcm.edu	36	10	14856383	14856383	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031453	exon1	c.C286T	p.R96C	.	.	.
NMT2	9397	hgsc.bcm.edu	36	10	15210365	15210365	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004808	exon8	c.G989T	p.R330I	.	.	.
FAM171A1	221061	hgsc.bcm.edu	36	10	15295317	15295317	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010924	exon8	c.C2276T	p.A759V	.	.	.
CUBN	8029	hgsc.bcm.edu	36	10	17153935	17153935	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001081	exon18	c.C2343T	p.N781N	.	.	.
CACNB2	783	hgsc.bcm.edu	36	10	18868282	18868282	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201596	exon14	c.G1606A	p.A536T	.	.	.
GAD2	2572	hgsc.bcm.edu	36	10	26547990	26547990	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134366	exon4	c.C299T	p.A100V	.	.	.
EPC1	80314	hgsc.bcm.edu	36	10	32634831	32634831	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025209	exon2	c.A188G	p.Q63R	.	.	.
ERCC6	2074	hgsc.bcm.edu	36	10	50351533	50351533	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000124	exon14	c.A2705T	p.N902I	.	.	.
PCDH15	65217	hgsc.bcm.edu	36	10	55370653	55370653	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142767	exon23	c.A3100G	p.I1034V	.	.	.
SFMBT2	57713	hgsc.bcm.edu	36	10	7366100	7366100	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001029880	exon6	c.C544T	p.P182S	.	.	.
MYOZ1	58529	hgsc.bcm.edu	36	10	75064357	75064357	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021245	exon4	c.G393C	p.Q131H	.	.	.
POLR3A	11128	hgsc.bcm.edu	36	10	79437535	79437535	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007055	exon15	c.C2005T	p.R669X	.	.	.
ZMIZ1	57178	hgsc.bcm.edu	36	10	80726265	80726265	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020338	exon13	c.A1262C	p.N421T	.	.	.
DYDC2	84332	hgsc.bcm.edu	36	10	82112254	82112254	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032372	exon3	c.G75T	p.R25R	.	.	.
KIF11	3832	hgsc.bcm.edu	36	10	94371152	94371152	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004523	exon10	c.C1159T	p.R387X	.	.	.
PDE6C	5146	hgsc.bcm.edu	36	10	95390685	95390685	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006204	exon14	c.T1756C	p.Y586H	.	.	.
SORBS1	10580	hgsc.bcm.edu	36	10	97121080	97121080	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001034954	exon19	c.T1898C	p.V633A	.	.	.
MORN4	118812	hgsc.bcm.edu	36	10	99366071	99366071	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178832	exon5	c.G380A	p.C127Y	.	.	.
SLCO4C1	353189	hgsc.bcm.edu	36	5	101625610	101625610	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_180991	exon5	c.G926A	p.R309Q	.	.	.
MARCH6	10299	hgsc.bcm.edu	36	5	10468633	10468633	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005885	exon21	c.C2000T	p.T667M	.	.	.
CTNND2	1501	hgsc.bcm.edu	36	5	11170619	11170619	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001332	exon13	c.G2220A	p.T740T	.	.	.
YTHDC2	64848	hgsc.bcm.edu	36	5	112930796	112930796	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022828	exon22	c.T2951C	p.V984A	.	.	.
GRAMD3	65983	hgsc.bcm.edu	36	5	125852394	125852394	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023927	exon13	c.G1168A	p.A390T	.	.	.
ADAMTS19	171019	hgsc.bcm.edu	36	5	128985917	128985917	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133638	exon10	c.G1729A	p.A577T	.	.	.
HSPA9	3313	hgsc.bcm.edu	36	5	137922216	137922216	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004134	exon12	c.G1440A	p.T480T	.	.	.
MATR3	9782	hgsc.bcm.edu	36	5	138671701	138671701	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001194955	exon2	c.A698C	p.D233A	.	.	.
NRG2	9542	hgsc.bcm.edu	36	5	139225345	139225345	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013982	exon5	c.C1162T	p.R388X	.	.	.
PCDHA3	56145	hgsc.bcm.edu	36	5	140161762	140161762	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031497	exon1	c.G796A	p.A266T	.	.	.
PCDHB2	56133	hgsc.bcm.edu	36	5	140455824	140455824	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018936	exon1	c.C1266A	p.T422T	.	.	.
ARHGAP26	23092	hgsc.bcm.edu	36	5	142263406	142263406	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015071	exon8	c.G820A	p.V274M	.	.	.
KCTD16	57528	hgsc.bcm.edu	36	5	143567029	143567029	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020768	exon3	c.C559T	p.R187W	.	.	.
PLAC8L1	153770	hgsc.bcm.edu	36	5	145445308	145445308	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001029869	exon3	c.C302T	p.A101V	.	.	.
TCERG1	10915	hgsc.bcm.edu	36	5	145818986	145818986	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040006	exon4	c.C785T	p.T262M	.	.	.
PDGFRB	5159	hgsc.bcm.edu	36	5	149492598	149492598	+	Silent	SNP	C	C	T	rs55889271	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002609	exon7	c.G1035A	p.P345P	.	.	.
ARSI	340075	hgsc.bcm.edu	36	5	149657832	149657832	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001012301	exon2	c.G848A	p.R283H	.	.	.
RBM22	55696	hgsc.bcm.edu	36	5	150051586	150051586	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018047	exon11	c.C1183T	p.R395W	.	.	.
FAT2	2196	hgsc.bcm.edu	36	5	150912970	150912970	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001447	exon5	c.G4117A	p.V1373I	.	.	.
GRIA1	2890	hgsc.bcm.edu	36	5	153058648	153058648	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114183	exon10	c.A1274G	p.N425S	.	.	.
THG1L	54974	hgsc.bcm.edu	36	5	157094180	157094180	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017872	exon3	c.G387T	p.V129V	.	.	.
UBLCP1	134510	hgsc.bcm.edu	36	5	158629501	158629501	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145049	exon3	c.T162G	p.P54P	.	.	.
HMMR	3161	hgsc.bcm.edu	36	5	162850081	162850081	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012485	exon16	c.G2022T	p.K674N	.	.	.
SLIT3	6586	hgsc.bcm.edu	36	5	168132500	168132500	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003062	exon14	c.C1323T	p.C441C	.	.	.
FAF2	23197	hgsc.bcm.edu	36	5	175858655	175858655	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014613	exon9	c.T974A	p.V325E	.	.	.
RAB24	53917	hgsc.bcm.edu	36	5	176662249	176662249	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130781	exon5	c.C268A	p.L90I	.	.	.
PDLIM7	9260	hgsc.bcm.edu	36	5	176847790	176847790	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203352	exon10	c.G833T	p.G278V	.	.	.
CCDC127	133957	hgsc.bcm.edu	36	5	258474	258474	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145265	exon3	c.T721C	p.W241R	.	.	.
EGFLAM	133584	hgsc.bcm.edu	36	5	38463067	38463067	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182798	exon9	c.C1308T	p.H436H	.	.	.
HCN1	348980	hgsc.bcm.edu	36	5	45298426	45298426	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021072	exon8	c.G2027A	p.S676N	.	.	.
ADAMTS6	11174	hgsc.bcm.edu	36	5	64546995	64546995	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_197941	exon19	c.C2348T	p.A783V	.	.	.
UTP15	84135	hgsc.bcm.edu	36	5	72909464	72909464	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032175	exon9	c.A922G	p.M308V	.	.	.
IQGAP2	10788	hgsc.bcm.edu	36	5	75937832	75937832	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006633	exon12	c.A1305C	p.E435D	.	.	.
IQGAP2	10788	hgsc.bcm.edu	36	5	76003422	76003422	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006633	exon24	c.C2926A	p.R976R	.	.	.
DMGDH	29958	hgsc.bcm.edu	36	5	78358105	78358105	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013391	exon13	c.C2088T	p.D696D	.	.	.
BHMT	635	hgsc.bcm.edu	36	5	78452013	78452013	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001713	exon4	c.C370T	p.Q124X	.	.	.
ZCCHC9	84240	hgsc.bcm.edu	36	5	80640185	80640185	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001131036	exon3	c.C434T	p.A145V	.	.	.
MCTP1	79772	hgsc.bcm.edu	36	5	94279423	94279423	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001002796	exon8	c.G621A	p.R207R	.	.	.
CHD1	1105	hgsc.bcm.edu	36	5	98263302	98263302	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001270	exon7	c.T867C	p.G289G	.	.	.
EBF1	1879	hgsc.bcm.edu	36	5	158067679	158067681	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	AGA	AGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024007	exon15	c.1628_1630del	p.543_544del	.	.	.
RNF130	55819	hgsc.bcm.edu	36	5	179323136	179323138	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	GAG	GAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018434	exon8	c.1183_1185del	p.395_395del	.	.	.
KIF22	3835	hgsc.bcm.edu	36	16	29717839	29717839	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2676-01	TCGA-A6-2676-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	.	.	.	.	.	.	.
