Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
BTBD7	55727	broad.mit.edu	36	14	92830945	92830946	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002860	exon3	c.174_175insA	p.K58fs	.	.	.
NAA25	80018	broad.mit.edu	36	12	111000879	111000880	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024953	exon6	c.527_528insC	p.L176fs	.	.	.
KIAA1530	57654	broad.mit.edu	36	4	1333585	1333586	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020894	exon3	c.372_373insG	p.F124fs	.	.	.
OTOF	9381	broad.mit.edu	36	2	26539910	26539911	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194322	exon23	c.3067_3068insC	p.M1023fs	.	.	.
COL4A2	1284	broad.mit.edu	36	13	109954324	109954325	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001846	exon44	c.4268_4269insC	p.G1423fs	.	.	.
HERC4	26091	broad.mit.edu	36	10	69420911	69420912	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015601	exon12	c.1323_1324insT	p.L441fs	.	.	.
ELP4	26610	broad.mit.edu	36	11	31659989	31659990	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
C10orf71	118461	broad.mit.edu	36	10	50200452	50200453	+	Splice_Site	INS	-	AGA	AGA	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
SLC12A9	56996	broad.mit.edu	36	7	100291331	100291331	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020246	exon4	c.C384T	p.N128N	.	.	.
PLOD3	8985	broad.mit.edu	36	7	100636291	100636291	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001084	exon19	c.C2208T	p.V736V	.	.	.
CLDN15	24146	broad.mit.edu	36	7	100667572	100667572	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014343	exon1	c.C11T	p.A4V	.	.	.
CUX1	1523	broad.mit.edu	36	7	101246081	101246081	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181500	exon1	c.A51G	p.L17L	.	.	.
CUX1	1523	broad.mit.edu	36	7	101545256	101545256	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181552	exon8	c.T657C	p.D219D	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107519386	107519386	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007356	exon14	c.C1622T	p.P541L	.	.	.
PNPLA8	50640	broad.mit.edu	36	7	107906935	107906935	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015723	exon11	c.G2003T	p.R668I	.	.	.
MET	4233	broad.mit.edu	36	7	116126947	116126947	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000245	exon2	c.G573A	p.R191R	.	.	.
CFTR	1080	broad.mit.edu	36	7	117094302	117094302	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000492	exon27	c.C4347A	p.L1449L	.	.	.
CALU	813	broad.mit.edu	36	7	128181734	128181734	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001219	exon3	c.G404A	p.G135D	.	.	.
IRF5	3663	broad.mit.edu	36	7	128369465	128369465	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098627	exon2	c.G94T	p.G32W	.	.	.
MKLN1	4289	broad.mit.edu	36	7	130801575	130801575	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013255	exon15	c.G1789A	p.V597I	.	.	.
CHRM2	1129	broad.mit.edu	36	7	136351170	136351170	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000739	exon4	c.A1018C	p.T340P	.	.	.
DGKI	9162	broad.mit.edu	36	7	136913565	136913565	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004717	exon16	c.C1689A	p.F563L	.	.	.
CREB3L2	64764	broad.mit.edu	36	7	137251199	137251199	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194071	exon3	c.C419T	p.P140L	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138173211	138173211	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164665	exon20	c.G5833A	p.V1945M	.	.	.
HIPK2	28996	broad.mit.edu	36	7	138908405	138908405	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022740	exon15	c.C3405A	p.A1135A	.	.	.
DENND2A	27147	broad.mit.edu	36	7	139868271	139868271	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015689	exon16	c.G2764A	p.E922K	.	.	.
SSBP1	6742	broad.mit.edu	36	7	141090194	141090194	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003143	exon5	c.T250C	p.W84R	.	.	.
MGAM	8972	broad.mit.edu	36	7	141446000	141446000	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004668	exon44	c.A5180C	p.H1727P	.	.	.
MGAM	8972	broad.mit.edu	36	7	141452118	141452118	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004668	exon48	c.C5532T	p.S1844S	.	.	.
PIP	5304	broad.mit.edu	36	7	142542464	142542464	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002652	exon2	c.G151A	p.E51K	.	.	.
ARHGEF5	7984	broad.mit.edu	36	7	143691168	143691168	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005435	exon2	c.C473A	p.S158Y	.	.	.
GIMAP6	474344	broad.mit.edu	36	7	149955770	149955770	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024711	exon3	c.C849T	p.H283H	.	.	.
ABP1	26	broad.mit.edu	36	7	150185983	150185983	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001091	exon2	c.G1492A	p.G498S	.	.	.
CHPF2	54480	broad.mit.edu	36	7	150566074	150566074	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019015	exon4	c.G1693A	p.A565T	.	.	.
SMARCD3	6604	broad.mit.edu	36	7	150569964	150569964	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003078	exon8	c.G670A	p.G224S	.	.	.
MLL3	58508	broad.mit.edu	36	7	151495240	151495240	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170606	exon42	c.A9674G	p.E3225G	.	.	.
DPP6	1804	broad.mit.edu	36	7	154276445	154276445	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039350	exon17	c.G1497T	p.T499T	.	.	.
ESYT2	57488	broad.mit.edu	36	7	158283405	158283405	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020728	exon3	c.G640A	p.V214M	.	.	.
VIPR2	7434	broad.mit.edu	36	7	158520053	158520053	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003382	exon9	c.C859T	p.P287S	.	.	.
PRPS1L1	221823	broad.mit.edu	36	7	18033083	18033083	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175886	exon1	c.A848G	p.H283R	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18650890	18650890	+	Silent	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178423	exon9	c.T975G	p.P325P	.	.	.
CDCA7L	55536	broad.mit.edu	36	7	21909243	21909243	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127371	exon8	c.C1074T	p.P358P	.	.	.
MPP6	51678	broad.mit.edu	36	7	24647953	24647953	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016447	exon4	c.A211G	p.I71V	.	.	.
HOXA1	3198	broad.mit.edu	36	7	27101722	27101722	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153620	exon1	c.C335T	p.A112V	.	.	.
HOXA6	3203	broad.mit.edu	36	7	27151987	27151987	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024014	exon2	c.G517T	p.E173X	.	.	.
BBS9	27241	broad.mit.edu	36	7	33540131	33540131	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033605	exon20	c.T2324C	p.L775S	.	.	.
DPY19L1	23333	broad.mit.edu	36	7	34964173	34964173	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015283	exon11	c.G908T	p.G303V	.	.	.
KIAA0895	23366	broad.mit.edu	36	7	36363574	36363574	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100425	exon3	c.T329C	p.V110A	.	.	.
ELMO1	9844	broad.mit.edu	36	7	37265354	37265354	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014800	exon6	c.G370A	p.D124N	.	.	.
C7orf11	136647	broad.mit.edu	36	7	40140378	40140378	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138701	exon1	c.C314A	p.P105Q	.	.	.
HECW1	23072	broad.mit.edu	36	7	43498251	43498251	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015052	exon18	c.A3287G	p.H1096R	.	.	.
NPC1L1	29881	broad.mit.edu	36	7	44542493	44542493	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013389	exon4	c.G1741A	p.A581T	.	.	.
TMED4	222068	broad.mit.edu	36	7	44587308	44587308	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182547	exon4	c.C443T	p.A148V	.	.	.
ADCY1	107	broad.mit.edu	36	7	45692712	45692712	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021116	exon14	c.C2369T	p.A790V	.	.	.
ADCY1	107	broad.mit.edu	36	7	45710707	45710707	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021116	exon17	c.C2784T	p.A928A	.	.	.
SUN3	256979	broad.mit.edu	36	7	48000545	48000545	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152782	exon9	c.C753T	p.I251I	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48345618	48345618	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152701	exon26	c.G9890A	p.C3297Y	.	.	.
CYTH3	9265	broad.mit.edu	36	7	6171940	6171940	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004227	exon10	c.C850A	p.R284R	.	.	.
GUSB	2990	broad.mit.edu	36	7	65070279	65070279	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000181	exon10	c.C1527T	p.H509H	.	.	.
KCTD7	154881	broad.mit.edu	36	7	65735763	65735763	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167961	exon2	c.T211C	p.C71R	.	.	.
WBSCR17	64409	broad.mit.edu	36	7	70518903	70518903	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022479	exon4	c.C682T	p.R228C	.	.	.
COL28A1	340267	broad.mit.edu	36	7	7379202	7379202	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037763	exon32	c.A2860G	p.T954A	.	.	.
CACNA2D1	781	broad.mit.edu	36	7	81462173	81462173	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000722	exon20	c.G1681A	p.D561N	.	.	.
SEMA3E	9723	broad.mit.edu	36	7	82867426	82867426	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012431	exon11	c.G1220C	p.S407T	.	.	.
ABCB1	5243	broad.mit.edu	36	7	86971587	86971587	+	Missense_Mutation	SNP	C	T	T	rs45456698	unknown	TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000927	exon29	c.G3751A	p.V1251I	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91564569	91564569	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147185	exon41	c.C10336T	p.R3446X	.	.	.
KRIT1	889	broad.mit.edu	36	7	91681164	91681164	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194455	exon16	c.A1796G	p.N599S	.	.	.
TFPI2	7980	broad.mit.edu	36	7	93357474	93357474	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006528	exon2	c.G182A	p.C61Y	.	.	.
BET1	10282	broad.mit.edu	36	7	93466461	93466461	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005868	exon2	c.G101T	p.R34M	.	.	.
LMTK2	22853	broad.mit.edu	36	7	97660240	97660240	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014916	exon11	c.A2527G	p.T843A	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98385636	98385636	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003496	exon36	c.G5074T	p.D1692Y	.	.	.
CPSF4	10898	broad.mit.edu	36	7	98883821	98883821	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081559	exon3	c.A296G	p.Y99C	.	.	.
STAG3	10734	broad.mit.edu	36	7	99634489	99634489	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012447	exon14	c.T1440C	p.L480L	.	.	.
UPK3B	80761	broad.mit.edu	36	7	75978038	75978038	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030570	exon1	c.133delG	p.G45fs	.	.	.
PTPN12	5782	broad.mit.edu	36	7	77103089	77103089	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001131009	exon14	c.1739delA	p.Q580fs	.	.	.
PSMF1	9491	broad.mit.edu	36	20	1047470	1047470	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006814	exon1	c.G54C	p.R18S	.	.	.
ISM1	140862	broad.mit.edu	36	20	13217293	13217293	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080826	exon4	c.A750G	p.A250A	.	.	.
DEFB129	140881	broad.mit.edu	36	20	158033	158033	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080831	exon2	c.A173C	p.K58T	.	.	.
ZNF133	7692	broad.mit.edu	36	20	18243827	18243827	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003434	exon7	c.T329C	p.L110S	.	.	.
RALGAPA2	57186	broad.mit.edu	36	20	20501605	20501605	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020343	exon21	c.C2815A	p.L939I	.	.	.
PYGB	5834	broad.mit.edu	36	20	25210748	25210748	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002862	exon12	c.C1483A	p.L495M	.	.	.
C20orf160	140706	broad.mit.edu	36	20	30066387	30066387	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080625	exon2	c.G50A	p.R17Q	.	.	.
DNMT3B	1789	broad.mit.edu	36	20	30831921	30831921	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175848	exon2	c.C131T	p.P44L	.	.	.
C20orf186	149954	broad.mit.edu	36	20	31146587	31146587	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182519	exon10	c.T1365C	p.L455L	.	.	.
ZNF341	84905	broad.mit.edu	36	20	31813449	31813449	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032819	exon8	c.C1128A	p.T376T	.	.	.
TRPC4AP	26133	broad.mit.edu	36	20	33072689	33072689	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199368	exon9	c.C1159A	p.L387I	.	.	.
DLGAP4	22839	broad.mit.edu	36	20	34493645	34493645	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014902	exon2	c.G111A	p.T37T	.	.	.
C20orf117	140710	broad.mit.edu	36	20	34877105	34877105	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080627	exon5	c.C2154T	p.S718S	.	.	.
TBC1D20	128637	broad.mit.edu	36	20	367247	367247	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144628	exon8	c.C1195T	p.L399L	.	.	.
FAM83D	81610	broad.mit.edu	36	20	37013672	37013672	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030919	exon4	c.C943A	p.L315M	.	.	.
CDC25B	994	broad.mit.edu	36	20	3726273	3726273	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021873	exon2	c.A205C	p.T69P	.	.	.
CHD6	84181	broad.mit.edu	36	20	39478769	39478769	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032221	exon33	c.A6359T	p.E2120V	.	.	.
CHD6	84181	broad.mit.edu	36	20	39502159	39502159	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032221	exon26	c.G3902A	p.R1301Q	.	.	.
CHD6	84181	broad.mit.edu	36	20	39595174	39595174	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032221	exon3	c.G483A	p.S161S	.	.	.
TOX2	84969	broad.mit.edu	36	20	42068783	42068783	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032883	exon4	c.A222G	p.P74P	.	.	.
STK4	6789	broad.mit.edu	36	20	43063249	43063249	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006282	exon9	c.A988G	p.M330V	.	.	.
SLC2A10	81031	broad.mit.edu	36	20	44787458	44787458	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030777	exon2	c.C376T	p.L126L	.	.	.
ZMYND8	23613	broad.mit.edu	36	20	45274720	45274720	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183047	exon22	c.C3404A	p.P1135Q	.	.	.
PREX1	57580	broad.mit.edu	36	20	46692175	46692175	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020820	exon29	c.G3713T	p.G1238V	.	.	.
ZNFX1	57169	broad.mit.edu	36	20	47314697	47314697	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021035	exon5	c.G2114A	p.R705H	.	.	.
KCNG1	3755	broad.mit.edu	36	20	49059997	49059997	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002237	exon2	c.A286G	p.T96A	.	.	.
CDS2	8760	broad.mit.edu	36	20	5118471	5118471	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003818	exon12	c.G1192A	p.A398T	.	.	.
TSHZ2	128553	broad.mit.edu	36	20	51305767	51305767	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173485	exon2	c.A2363G	p.Q788R	.	.	.
ZBP1	81030	broad.mit.edu	36	20	55620259	55620259	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160417	exon6	c.C801T	p.H267H	.	.	.
ZNF831	128611	broad.mit.edu	36	20	57262971	57262971	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178457	exon5	c.C4812A	p.P1604P	.	.	.
SYCP2	10388	broad.mit.edu	36	20	57900774	57900774	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014258	exon23	c.C2030A	p.T677N	.	.	.
OSBPL2	9885	broad.mit.edu	36	20	60302317	60302317	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014835	exon14	c.C1386T	p.S462S	.	.	.
MAVS	57506	broad.mit.edu	36	20	3790041	3790041	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020746	exon4	c.355delC	p.P119fs	.	.	.
PLCB1	23236	broad.mit.edu	36	20	8693986	8693986	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182734	exon26	c.2911delA	p.K971fs	.	.	.
HSP90AA1	3320	broad.mit.edu	36	14	101619351	101619351	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005348	exon9	c.C1528T	p.R510C	.	.	.
TEP1	7011	broad.mit.edu	36	14	19924164	19924164	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007110	exon20	c.G2892A	p.E964E	.	.	.
METT11D1	64745	broad.mit.edu	36	14	20534215	20534215	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022734	exon12	c.A1004G	p.H335R	.	.	.
NDRG2	57447	broad.mit.edu	36	14	20558522	20558522	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016250	exon8	c.G486T	p.K162N	.	.	.
PRMT5	10419	broad.mit.edu	36	14	22463979	22463979	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006109	exon8	c.C888A	p.A296A	.	.	.
CDH24	64403	broad.mit.edu	36	14	22594257	22594257	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022478	exon3	c.T347C	p.V116A	.	.	.
HOMEZ	57594	broad.mit.edu	36	14	22815133	22815133	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020834	exon2	c.C1144T	p.R382W	.	.	.
LRRC16B	90668	broad.mit.edu	36	14	23599756	23599756	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138360	exon25	c.A2141G	p.E714G	.	.	.
TINF2	26277	broad.mit.edu	36	14	23779680	23779680	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012461	exon6	c.C846A	p.R282R	.	.	.
CIDEB	27141	broad.mit.edu	36	14	23845109	23845109	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014430	exon6	c.C411T	p.D137D	.	.	.
NOVA1	4857	broad.mit.edu	36	14	25987238	25987238	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002515	exon5	c.A1291G	p.N431D	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29171845	29171845	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002742	exon9	c.C1373T	p.T458I	.	.	.
SCFD1	23256	broad.mit.edu	36	14	30212272	30212272	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182835	exon11	c.G853T	p.E285X	.	.	.
FAM177A1	283635	broad.mit.edu	36	14	34592373	34592373	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173607	exon2	c.C304A	p.L102M	.	.	.
RALGAPA1	253959	broad.mit.edu	36	14	35211869	35211869	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194301	exon24	c.A3510G	p.T1170T	.	.	.
MBIP	51562	broad.mit.edu	36	14	35853865	35853865	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016586	exon3	c.T257C	p.L86S	.	.	.
C14orf106	55320	broad.mit.edu	36	14	44781441	44781441	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018353	exon4	c.A689T	p.N230I	.	.	.
TRIM9	114088	broad.mit.edu	36	14	50630862	50630862	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052978	exon1	c.C546T	p.C182C	.	.	.
TXNDC16	57544	broad.mit.edu	36	14	52074128	52074128	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020784	exon5	c.A256G	p.K86E	.	.	.
WDHD1	11169	broad.mit.edu	36	14	54499458	54499458	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007086	exon19	c.A2493G	p.E831E	.	.	.
PELI2	57161	broad.mit.edu	36	14	55833325	55833325	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021255	exon6	c.C951T	p.H317H	.	.	.
SYT16	83851	broad.mit.edu	36	14	61620695	61620695	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031914	exon5	c.C1463T	p.A488V	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63666372	63666372	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015180	exon75	c.G14139T	p.E4713D	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63739395	63739395	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015180	exon100	c.C18162T	p.C6054C	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63750760	63750760	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182913	exon1	c.C54T	p.S18S	.	.	.
RDH12	145226	broad.mit.edu	36	14	67262554	67262554	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152443	exon6	c.C377T	p.A126V	.	.	.
RGS6	9628	broad.mit.edu	36	14	72054862	72054862	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004296	exon15	c.C1142T	p.A381V	.	.	.
C14orf43	91748	broad.mit.edu	36	14	73257809	73257809	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001043318	exon11	c.C2881T	p.R961C	.	.	.
LTBP2	4053	broad.mit.edu	36	14	74045705	74045705	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000428	exon22	c.A3392T	p.D1131V	.	.	.
SEL1L	6400	broad.mit.edu	36	14	81023543	81023543	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005065	exon16	c.G1576A	p.A526T	.	.	.
FLRT2	23768	broad.mit.edu	36	14	85159591	85159591	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013231	exon2	c.G1980A	p.T660T	.	.	.
TDP1	55775	broad.mit.edu	36	14	89525047	89525047	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008744	exon10	c.C1177T	p.P393S	.	.	.
CPSF2	53981	broad.mit.edu	36	14	91692669	91692669	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017437	exon12	c.T1536C	p.D512D	.	.	.
RIN3	79890	broad.mit.edu	36	14	92195488	92195488	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024832	exon7	c.C2256A	p.A752A	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93158897	93158897	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020818	exon30	c.C5034A	p.I1678I	.	.	.
HHIPL1	84439	broad.mit.edu	36	14	99188860	99188860	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032425	exon2	c.G802A	p.V268I	.	.	.
TRAF3	7187	broad.mit.edu	36	14	102433379	102433379	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145725	exon10	c.848delA	p.E283fs	.	.	.
FOXN3	1112	broad.mit.edu	36	14	88948287	88948287	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085471	exon2	c.287delC	p.P96fs	.	.	.
XKR3	150165	broad.mit.edu	36	22	15660748	15660748	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175878	exon3	c.G502T	p.V168L	.	.	.
BCR	613	broad.mit.edu	36	22	21945933	21945933	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021574	exon8	c.G2087A	p.R696Q	.	.	.
UPB1	51733	broad.mit.edu	36	22	23221420	23221420	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016327	exon1	c.C49T	p.L17L	.	.	.
CCDC117	150275	broad.mit.edu	36	22	27499758	27499758	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173510	exon2	c.G231T	p.E77D	.	.	.
RNF185	91445	broad.mit.edu	36	22	29921540	29921540	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152267	exon4	c.G281T	p.R94M	.	.	.
LIMK2	3985	broad.mit.edu	36	22	29985964	29985964	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005569	exon5	c.C452T	p.T151M	.	.	.
APOBEC3F	200316	broad.mit.edu	36	22	37778582	37778582	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145298	exon7	c.C1058A	p.P353H	.	.	.
TAB1	10454	broad.mit.edu	36	22	38102037	38102037	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145738	exon3	c.C375T	p.C125C	.	.	.
EP300	2033	broad.mit.edu	36	22	39855877	39855877	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001429	exon5	c.C1206T	p.H402H	.	.	.
WBP2NL	164684	broad.mit.edu	36	22	40745635	40745635	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152613	exon3	c.C195A	p.S65S	.	.	.
ARHGAP8	23779	broad.mit.edu	36	22	43583582	43583582	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017526	exon5	c.T332G	p.V111G	.	.	.
PRR5-ARHGAP8	553158	broad.mit.edu	36	22	43634296	43634296	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181334	exon14	c.T1265C	p.V422A	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45034293	45034293	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006071	exon1	c.C3591T	p.Y1197Y	.	.	.
TBC1D22A	25771	broad.mit.edu	36	22	45686668	45686668	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014346	exon8	c.G935A	p.R312H	.	.	.
ZBED4	9889	broad.mit.edu	36	22	48664544	48664544	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014838	exon2	c.C1230T	p.D410D	.	.	.
TUBGCP6	85378	broad.mit.edu	36	22	49001726	49001726	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020461	exon16	c.C3189T	p.V1063V	.	.	.
CPT1B	1375	broad.mit.edu	36	22	49355593	49355593	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152246	exon17	c.G2137A	p.G713S	CPT1B,central_nervous_system,brain,Substitution - coding silent,+2	.	.
CPT1B	1375	broad.mit.edu	36	22	49362239	49362241	+	In_Frame_Del	DEL	GAA	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152246	exon4	c.370_372del	p.124_124del	.	.	.
CDC37	11140	broad.mit.edu	36	19	10367775	10367775	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007065	exon2	c.G207T	p.K69N	.	.	.
DOCK6	57572	broad.mit.edu	36	19	11214977	11214977	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020812	exon12	c.G1343A	p.G448D	.	.	.
ZNF20	7568	broad.mit.edu	36	19	12104917	12104917	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021143	exon4	c.A1084G	p.T362A	.	.	.
LPHN1	22859	broad.mit.edu	36	19	14133287	14133287	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014921	exon6	c.G1347A	p.L449L	.	.	.
EMR3	84658	broad.mit.edu	36	19	14609918	14609918	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032571	exon11	c.C1483T	p.R495X	.	.	.
NOTCH3	4854	broad.mit.edu	36	19	15134350	15134350	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000435	exon32	c.G5839A	p.A1947T	.	.	.
CYP4F12	66002	broad.mit.edu	36	19	15652241	15652241	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023944	exon5	c.G437A	p.R146H	.	.	.
SIN3B	23309	broad.mit.edu	36	19	16818795	16818795	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015260	exon5	c.C597T	p.N199N	.	.	.
GTPBP3	84705	broad.mit.edu	36	19	17310472	17310472	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032620	exon4	c.G513A	p.A171A	.	.	.
GLT25D1	79709	broad.mit.edu	36	19	17539290	17539290	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024656	exon4	c.G565A	p.A189T	.	.	.
MAP1S	55201	broad.mit.edu	36	19	17692799	17692799	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018174	exon2	c.A173G	p.K58R	.	.	.
UBA52	7311	broad.mit.edu	36	19	18546701	18546701	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033930	exon4	c.T212C	p.L71S	.	.	.
UPF1	5976	broad.mit.edu	36	19	18833856	18833856	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002911	exon18	c.G2495A	p.R832H	.	.	.
NCAN	1463	broad.mit.edu	36	19	19190890	19190890	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004386	exon3	c.G240T	p.K80N	.	.	.
HAPLN4	404037	broad.mit.edu	36	19	19230425	19230425	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023002	exon4	c.G724A	p.G242S	.	.	.
ZNF430	80264	broad.mit.edu	36	19	21031796	21031796	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172671	exon5	c.T839C	p.I280T	.	.	.
ZNF676	163223	broad.mit.edu	36	19	22156090	22156090	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001411	exon3	c.A269G	p.E90G	.	.	.
ZNF675	171392	broad.mit.edu	36	19	23627982	23627982	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138330	exon4	c.T1593C	p.T531T	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36462317	36462317	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020856	exon2	c.C222T	p.S74S	.	.	.
GPATCH1	55094	broad.mit.edu	36	19	38276953	38276953	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018025	exon5	c.G491A	p.G164D	.	.	.
UBA2	10054	broad.mit.edu	36	19	39627762	39627762	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005499	exon8	c.G667A	p.E223K	.	.	.
LGI4	163175	broad.mit.edu	36	19	40314773	40314773	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139284	exon4	c.A328G	p.N110D	.	.	.
FXYD5	53827	broad.mit.edu	36	19	40340186	40340186	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164605	exon3	c.G84A	p.T28T	.	.	.
ARHGAP33	115703	broad.mit.edu	36	19	40963017	40963017	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052948	exon7	c.C566T	p.A189V	.	.	.
NPHS1	4868	broad.mit.edu	36	19	41026315	41026315	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004646	exon17	c.C2233A	p.L745I	.	.	.
ZNF790	388536	broad.mit.edu	36	19	42001700	42001700	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206894	exon5	c.C1386T	p.G462G	.	.	.
SHD	56961	broad.mit.edu	36	19	4231101	4231101	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020209	exon1	c.G41A	p.R14Q	.	.	.
ZNF585B	92285	broad.mit.edu	36	19	42372446	42372446	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152279	exon4	c.A249G	p.E83E	.	.	.
ZNF540	163255	broad.mit.edu	36	19	42794675	42794675	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152606	exon5	c.G654C	p.E218D	.	.	.
DPF1	8193	broad.mit.edu	36	19	43398864	43398864	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135156	exon8	c.C582A	p.A194A	.	.	.
KCNK6	9424	broad.mit.edu	36	19	43509256	43509256	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004823	exon2	c.C506T	p.A169V	.	.	.
GGN	199720	broad.mit.edu	36	19	43569044	43569044	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152657	exon3	c.C698T	p.A233V	.	.	.
RYR1	6261	broad.mit.edu	36	19	43685051	43685051	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042723	exon48	c.C7679T	p.P2560L	.	.	.
CHAF1A	10036	broad.mit.edu	36	19	4381604	4381604	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005483	exon11	c.A1913G	p.H638R	.	.	.
SUPT5H	6829	broad.mit.edu	36	19	44652679	44652679	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003169	exon16	c.C1455T	p.F485F	.	.	.
DYRK1B	9149	broad.mit.edu	36	19	45010804	45010804	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006483	exon6	c.C780T	p.F260F	.	.	.
FBL	2091	broad.mit.edu	36	19	45021565	45021565	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001436	exon5	c.G499A	p.G167R	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45072126	45072126	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003890	exon23	c.G11029A	p.V3677M	.	.	.
GRIK5	2901	broad.mit.edu	36	19	47249664	47249664	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002088	exon10	c.A1199T	p.N400I	.	.	.
PSG9	5678	broad.mit.edu	36	19	48457881	48457881	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002784	exon3	c.G680A	p.R227H	.	.	.
C19orf61	56006	broad.mit.edu	36	19	48946696	48946696	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019108	exon2	c.G38T	p.G13V	.	.	.
UHRF1	29128	broad.mit.edu	36	19	4895462	4895462	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001048201	exon9	c.G1305T	p.Q435H	.	.	.
ZNF45	7596	broad.mit.edu	36	19	49110757	49110757	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003425	exon10	c.C671T	p.A224V	.	.	.
PVRL2	5819	broad.mit.edu	36	19	50067176	50067176	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002856	exon3	c.G705A	p.T235T	.	.	.
VASP	7408	broad.mit.edu	36	19	50719733	50719733	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003370	exon11	c.A1022G	p.Y341C	.	.	.
STRN4	29888	broad.mit.edu	36	19	51925935	51925935	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039877	exon6	c.G773A	p.G258D	.	.	.
ZC3H4	23211	broad.mit.edu	36	19	52289130	52289130	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015168	exon4	c.G429A	p.S143S	.	.	.
CABP5	56344	broad.mit.edu	36	19	53234377	53234377	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019855	exon4	c.G248A	p.R83H	.	.	.
CCDC114	93233	broad.mit.edu	36	19	53498839	53498839	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144577	exon8	c.G757A	p.E253K	.	.	.
GRIN2D	2906	broad.mit.edu	36	19	53616982	53616982	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000836	exon10	c.C2220T	p.R740R	.	.	.
SULT2B1	6820	broad.mit.edu	36	19	53794270	53794270	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004605	exon6	c.G848A	p.R283H	.	.	.
CA11	770	broad.mit.edu	36	19	53840697	53840697	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001217	exon1	c.G5C	p.G2A	.	.	.
SLC17A7	57030	broad.mit.edu	36	19	54628007	54628007	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020309	exon8	c.G890A	p.R297H	.	.	.
IZUMO2	126123	broad.mit.edu	36	19	55354316	55354316	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152358	exon4	c.G398A	p.C133Y	.	.	.
KCNC3	3748	broad.mit.edu	36	19	55518698	55518698	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004977	exon2	c.C1324T	p.R442C	.	.	.
POLD1	5424	broad.mit.edu	36	19	55596964	55596964	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002691	exon4	c.C434A	p.A145D	.	.	.
GPR32	2854	broad.mit.edu	36	19	55966640	55966640	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001506	exon1	c.A971G	p.Q324R	.	.	.
KLK7	5650	broad.mit.edu	36	19	56172699	56172699	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005046	exon6	c.A667C	p.T223P	.	.	.
SIGLEC9	27180	broad.mit.edu	36	19	56322195	56322195	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198558	exon4	c.C845A	p.P282H	.	.	.
SIGLEC8	27181	broad.mit.edu	36	19	56650484	56650484	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014442	exon4	c.G1051T	p.G351C	.	.	.
ZNF534	147658	broad.mit.edu	36	19	57629162	57629162	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143939	exon2	c.G158A	p.R53H	.	.	.
FUT6	2528	broad.mit.edu	36	19	5782897	5782897	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040701	exon2	c.C682A	p.L228M	.	.	.
CACNG8	59283	broad.mit.edu	36	19	59158352	59158352	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031895	exon1	c.C144T	p.R48R	.	.	.
LILRB5	10990	broad.mit.edu	36	19	59449733	59449733	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081442	exon8	c.G1317T	p.E439D	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60143322	60143322	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139176	exon4	c.T677C	p.L226P	.	.	.
BRSK1	84446	broad.mit.edu	36	19	60492673	60492673	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032430	exon4	c.G331T	p.E111X	.	.	.
USP29	57663	broad.mit.edu	36	19	62331994	62331994	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020903	exon4	c.T139A	p.F47I	.	.	.
AURKC	6795	broad.mit.edu	36	19	62434479	62434479	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001015878	exon1	c.C51T	p.G17G	.	.	.
ZNF304	57343	broad.mit.edu	36	19	62559495	62559495	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020657	exon3	c.A446G	p.D149G	.	.	.
ZNF548	147694	broad.mit.edu	36	19	62601995	62601995	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152909	exon3	c.C528T	p.S176S	.	.	.
ZNF416	55659	broad.mit.edu	36	19	62779024	62779024	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017879	exon3	c.C162T	p.R54R	.	.	.
ZNF134	7693	broad.mit.edu	36	19	62824567	62824567	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003435	exon3	c.C1268T	p.T423I	.	.	.
ZSCAN1	284312	broad.mit.edu	36	19	63256974	63256974	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182572	exon6	c.G970A	p.E324K	.	.	.
SLC25A23	79085	broad.mit.edu	36	19	6393163	6393163	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024103	exon10	c.C1230T	p.I410I	.	.	.
C3	718	broad.mit.edu	36	19	6629194	6629194	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000064	exon40	c.C4819T	p.L1607F	.	.	.
INSR	3643	broad.mit.edu	36	19	7218509	7218509	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000208	exon2	c.G499A	p.V167M	.	.	.
CLEC4M	10332	broad.mit.edu	36	19	7736886	7736886	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144904	exon4	c.G424T	p.G142C	.	.	.
ELAVL1	1994	broad.mit.edu	36	19	7934533	7934533	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001419	exon6	c.A815G	p.N272S	.	.	.
MED16	10025	broad.mit.edu	36	19	836862	836862	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005481	exon5	c.C787A	p.L263M	.	.	.
MUC16	94025	broad.mit.edu	36	19	8920163	8920163	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.A28283G	p.E9428G	.	.	.
MUC16	94025	broad.mit.edu	36	19	8922421	8922421	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.A26025G	p.P8675P	.	.	.
MUC16	94025	broad.mit.edu	36	19	8924557	8924557	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.C23889A	p.P7963P	.	.	.
MUC16	94025	broad.mit.edu	36	19	8935664	8935664	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.C12782A	p.P4261H	.	.	.
ZNF317	57693	broad.mit.edu	36	19	9132707	9132707	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190791	exon6	c.C1290A	p.T430T	.	.	.
ZNF559	84527	broad.mit.edu	36	19	9314515	9314515	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032497	exon6	c.G1388T	p.R463M	.	.	.
ICAM1	3383	broad.mit.edu	36	19	10256602	10256602	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000201	exon6	c.1324delG	p.G442fs	.	.	.
BRD4	23476	broad.mit.edu	36	19	15214819	15214819	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058243	exon14	c.3061delC	p.H1021fs	.	.	.
C19orf76	199800	broad.mit.edu	36	19	54885546	54885546	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001101340	exon2	c.446delC	p.S149fs	.	.	.
ZSCAN18	65982	broad.mit.edu	36	19	63288468	63288468	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145542	exon7	c.1097delC	p.P366fs	.	.	.
PNPLA6	10908	broad.mit.edu	36	19	7531960	7531960	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166111	exon32	c.3907delC	p.P1303fs	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100184454	100184454	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152564	exon5	c.C510T	p.S170S	.	.	.
DPYS	1807	broad.mit.edu	36	8	105528889	105528889	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001385	exon3	c.A442T	p.I148F	.	.	.
NUDCD1	84955	broad.mit.edu	36	8	110324675	110324675	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032869	exon10	c.A1491T	p.K497N	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110558036	110558036	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177531	exon52	c.C8881T	p.H2961Y	.	.	.
KCNV1	27012	broad.mit.edu	36	8	111053876	111053876	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014379	exon2	c.C778T	p.R260C	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116685580	116685580	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014112	exon4	c.G1791A	p.P597P	.	.	.
USP17L2	377630	broad.mit.edu	36	8	12032249	12032249	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201402	exon1	c.A1430G	p.N477S	.	.	.
ENPP2	5168	broad.mit.edu	36	8	120677287	120677287	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006209	exon12	c.C1109T	p.A370V	.	.	.
ATAD2	29028	broad.mit.edu	36	8	124404408	124404408	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014109	exon27	c.A4082G	p.Q1361R	.	.	.
KLHL38	340359	broad.mit.edu	36	8	124727325	124727325	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081675	exon3	c.C1581T	p.G527G	.	.	.
KLHL38	340359	broad.mit.edu	36	8	124734207	124734207	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081675	exon1	c.C141T	p.C47C	.	.	.
OC90	729330	broad.mit.edu	36	8	133113361	133113361	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080399	exon12	c.G980A	p.G327D	.	.	.
OC90	729330	broad.mit.edu	36	8	133122549	133122549	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080399	exon6	c.C381T	p.A127A	.	.	.
ARC	23237	broad.mit.edu	36	8	143691950	143691950	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015193	exon1	c.C685T	p.R229W	.	.	.
CYP11B2	1585	broad.mit.edu	36	8	143995505	143995505	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000498	exon2	c.C367T	p.R123C	.	.	.
LY6E	4061	broad.mit.edu	36	8	144174220	144174220	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002346	exon3	c.G167A	p.G56D	.	.	.
TOP1MT	116447	broad.mit.edu	36	8	144469612	144469612	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052963	exon11	c.A1390G	p.I464V	.	.	.
ZC3H3	23144	broad.mit.edu	36	8	144619045	144619045	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015117	exon9	c.C2292T	p.C764C	.	.	.
ARHGEF10	9639	broad.mit.edu	36	8	1864211	1864211	+	Missense_Mutation	SNP	C	T	T	rs35925274	unknown	TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014629	exon24	c.C2909T	p.T970M	.	.	.
PIWIL2	55124	broad.mit.edu	36	8	22193035	22193035	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018068	exon2	c.C191T	p.A64V	.	.	.
TNFRSF10B	8795	broad.mit.edu	36	8	22936321	22936321	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003842	exon9	c.C1131A	p.G377G	.	.	.
ADAM28	10863	broad.mit.edu	36	8	24249029	24249029	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021777	exon14	c.C1497T	p.H499H	.	.	.
CDCA2	157313	broad.mit.edu	36	8	25396913	25396913	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152562	exon9	c.G1114A	p.E372K	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2823550	2823550	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033225	exon55	c.A8558G	p.Q2853R	.	.	.
EXTL3	2137	broad.mit.edu	36	8	28629759	28629759	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001440	exon3	c.G264A	p.S88S	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2863527	2863527	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033225	exon52	c.G7909A	p.V2637I	.	.	.
TEX15	56154	broad.mit.edu	36	8	30821647	30821647	+	Silent	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031271	exon1	c.A4429C	p.R1477R	.	.	.
PROSC	11212	broad.mit.edu	36	8	37742251	37742251	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007198	exon2	c.C149T	p.P50L	.	.	.
WHSC1L1	54904	broad.mit.edu	36	8	38256311	38256311	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023034	exon21	c.A3664G	p.M1222V	.	.	.
ANK1	286	broad.mit.edu	36	8	41692364	41692364	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020475	exon14	c.T1565A	p.L522H	.	.	.
MYST3	7994	broad.mit.edu	36	8	41917965	41917965	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099413	exon16	c.G2591A	p.R864Q	.	.	.
HGSNAT	138050	broad.mit.edu	36	8	43121333	43121333	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152419	exon2	c.C204A	p.T68T	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52528710	52528710	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144651	exon10	c.C1171T	p.R391W	.	.	.
OPRK1	4986	broad.mit.edu	36	8	54304823	54304823	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000912	exon4	c.G730A	p.V244I	.	.	.
ATP6V1H	51606	broad.mit.edu	36	8	54844769	54844769	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015941	exon11	c.T1137C	p.N379N	.	.	.
FAM110B	90362	broad.mit.edu	36	8	59221726	59221726	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147189	exon5	c.C383T	p.S128F	.	.	.
TOX	9760	broad.mit.edu	36	8	59926717	59926717	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014729	exon4	c.C613T	p.P205S	.	.	.
CHD7	55636	broad.mit.edu	36	8	61929573	61929573	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017780	exon32	c.C6873T	p.D2291D	.	.	.
CSPP1	79848	broad.mit.edu	36	8	68160840	68160840	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024790	exon4	c.C352T	p.R118W	.	.	.
CPA6	57094	broad.mit.edu	36	8	68559470	68559470	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020361	exon7	c.A745G	p.N249D	.	.	.
PRDM14	63978	broad.mit.edu	36	8	71144186	71144186	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024504	exon2	c.C464T	p.A155V	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73111190	73111190	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007332	exon21	c.G2442A	p.T814T	.	.	.
CRISPLD1	83690	broad.mit.edu	36	8	76087694	76087694	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031461	exon4	c.C392T	p.T131M	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77938789	77938789	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024721	exon11	c.C10284T	p.F3428F	.	.	.
SGK223	157285	broad.mit.edu	36	8	8213242	8213242	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080826	exon5	c.C4053A	p.I1351I	.	.	.
SGK223	157285	broad.mit.edu	36	8	8213685	8213685	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080826	exon5	c.C3610T	p.Q1204X	.	.	.
ATP6V0D2	245972	broad.mit.edu	36	8	87180337	87180337	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152565	exon1	c.C14T	p.A5V	.	.	.
CNBD1	168975	broad.mit.edu	36	8	87947920	87947920	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173538	exon1	c.T81C	p.S27S	.	.	.
CNBD1	168975	broad.mit.edu	36	8	88287464	88287464	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173538	exon5	c.T559C	p.W187R	.	.	.
CNBD1	168975	broad.mit.edu	36	8	88366075	88366075	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173538	exon7	c.G825A	p.S275S	.	.	.
FAM92A1	137392	broad.mit.edu	36	8	94791176	94791176	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145269	exon5	c.C440T	p.A147V	.	.	.
RBM12B	389677	broad.mit.edu	36	8	94815493	94815493	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203390	exon3	c.G2322A	p.P774P	.	.	.
TSPYL5	85453	broad.mit.edu	36	8	98358016	98358016	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033512	exon1	c.T1233C	p.P411P	.	.	.
STK3	6788	broad.mit.edu	36	8	99848647	99848647	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006281	exon3	c.G236T	p.S79I	.	.	.
SASS6	163786	broad.mit.edu	36	1	100323713	100323713	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194292	exon16	c.C1834T	p.R612C	.	.	.
S1PR1	1901	broad.mit.edu	36	1	101477913	101477913	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001400	exon2	c.T785C	p.L262P	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103316823	103316823	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001854	exon3	c.C467G	p.T156S	.	.	.
KIAA1324	57535	broad.mit.edu	36	1	109542220	109542220	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020775	exon17	c.G2399T	p.R800M	.	.	.
PSMA5	5686	broad.mit.edu	36	1	109757267	109757267	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199774	exon4	c.T63C	p.S21S	.	.	.
GSTM4	2948	broad.mit.edu	36	1	110003184	110003184	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147148	exon7	c.C496A	p.L166I	.	.	.
OVGP1	5016	broad.mit.edu	36	1	111767799	111767799	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002557	exon5	c.T372C	p.V124V	.	.	.
MTOR	2475	broad.mit.edu	36	1	11187214	11187214	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004958	exon26	c.C3935T	p.P1312L	.	.	.
ST7L	54879	broad.mit.edu	36	1	112942130	112942130	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138728	exon5	c.G608A	p.R203H	.	.	.
HIPK1	204851	broad.mit.edu	36	1	114301321	114301321	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198269	exon6	c.T523C	p.Y175H	.	.	.
TRIM45	80263	broad.mit.edu	36	1	117464939	117464939	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145635	exon1	c.C408T	p.D136D	.	.	.
VTCN1	79679	broad.mit.edu	36	1	117500743	117500743	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024626	exon3	c.G421A	p.A141T	.	.	.
TNFRSF8	943	broad.mit.edu	36	1	12087041	12087041	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001243	exon4	c.C287T	p.T96M	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12239041	12239041	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018156	exon8	c.C734T	p.S245F	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12345450	12345450	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018156	exon50	c.C10154A	p.S3385Y	.	.	.
NUDT17	200035	broad.mit.edu	36	1	144298008	144298008	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012758	exon8	c.G925T	p.G309W	.	.	.
PLEKHO1	51177	broad.mit.edu	36	1	148398195	148398195	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016274	exon6	c.G1083T	p.E361D	.	.	.
ADAMTSL4	54507	broad.mit.edu	36	1	148792986	148792986	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019032	exon6	c.C895T	p.P299S	.	.	.
TCHH	7062	broad.mit.edu	36	1	150346569	150346569	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007113	exon2	c.C5748T	p.G1916G	.	.	.
TCHH	7062	broad.mit.edu	36	1	150348464	150348464	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007113	exon2	c.C3853T	p.R1285C	.	.	.
FLG	2312	broad.mit.edu	36	1	150550255	150550255	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002016	exon3	c.C3731T	p.A1244V	.	.	.
FLG2	388698	broad.mit.edu	36	1	150590663	150590663	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014342	exon3	c.C6223T	p.Q2075X	.	.	.
CRNN	49860	broad.mit.edu	36	1	150649983	150649983	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016190	exon3	c.G199T	p.G67W	.	.	.
NPR1	4881	broad.mit.edu	36	1	151926143	151926143	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000906	exon12	c.C1891A	p.L631M	.	.	.
PBXIP1	57326	broad.mit.edu	36	1	153184805	153184805	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020524	exon10	c.C1969T	p.R657W	.	.	.
GBA	2629	broad.mit.edu	36	1	153473975	153473975	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000157	exon7	c.T780C	p.A260A	.	.	.
YY1AP1	55249	broad.mit.edu	36	1	153915836	153915836	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198906	exon4	c.C311A	p.P104H	.	.	.
TMEM79	84283	broad.mit.edu	36	1	154522004	154522004	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032323	exon2	c.G363A	p.L121L	.	.	.
TTC24	164118	broad.mit.edu	36	1	154822897	154822897	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105669	exon11	c.G1680A	p.W560X	.	.	.
SH2D2A	9047	broad.mit.edu	36	1	155050676	155050676	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161443	exon3	c.G259T	p.G87W	.	.	.
ARHGEF11	9826	broad.mit.edu	36	1	155208164	155208164	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198236	exon8	c.G651A	p.R217R	.	.	.
FCRL1	115350	broad.mit.edu	36	1	156038349	156038349	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159398	exon5	c.C866T	p.A289V	.	.	.
CDK11B	984	broad.mit.edu	36	1	1563054	1563054	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033486	exon13	c.C1391T	p.P464L	.	.	.
OR6N1	128372	broad.mit.edu	36	1	157002604	157002604	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005185	exon1	c.C493T	p.R165C	.	.	.
NCSTN	23385	broad.mit.edu	36	1	158585440	158585440	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015331	exon3	c.T218A	p.I73N	.	.	.
NCSTN	23385	broad.mit.edu	36	1	158590588	158590588	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015331	exon11	c.C1236A	p.I412I	.	.	.
RSC1A1	6248	broad.mit.edu	36	1	15859752	15859752	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006511	exon1	c.C802T	p.Q268X	.	.	.
SLAMF7	57823	broad.mit.edu	36	1	158986380	158986380	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021181	exon3	c.C522T	p.S174S	.	.	.
USP21	27005	broad.mit.edu	36	1	159397329	159397329	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012475	exon2	c.G275A	p.G92D	.	.	.
SPEN	23013	broad.mit.edu	36	1	16130935	16130935	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015001	exon11	c.G5613T	p.E1871D	.	.	.
DUSP27	92235	broad.mit.edu	36	1	165361768	165361768	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080426	exon5	c.G776A	p.R259Q	.	.	.
GPR161	23432	broad.mit.edu	36	1	166332643	166332643	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153832	exon5	c.C826A	p.L276I	.	.	.
DPT	1805	broad.mit.edu	36	1	166964880	166964880	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001937	exon1	c.G157T	p.G53W	.	.	.
BLZF1	8548	broad.mit.edu	36	1	167618001	167618001	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003666	exon6	c.C875T	p.T292I	.	.	.
F5	2153	broad.mit.edu	36	1	167788465	167788465	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000130	exon8	c.G1250T	p.G417V	.	.	.
SELE	6401	broad.mit.edu	36	1	167965398	167965398	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000450	exon6	c.C756T	p.F252F	.	.	.
SCYL3	57147	broad.mit.edu	36	1	168098491	168098491	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181093	exon10	c.C1027T	p.L343F	.	.	.
BAT2L2	23215	broad.mit.edu	36	1	169768302	169768302	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015172	exon12	c.C1445T	p.A482V	.	.	.
C1orf9	51430	broad.mit.edu	36	1	170814111	170814111	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014283	exon14	c.A1391T	p.Q464L	.	.	.
TNR	7143	broad.mit.edu	36	1	173638965	173638965	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003285	exon4	c.C910T	p.R304X	.	.	.
FAM163A	148753	broad.mit.edu	36	1	178048886	178048886	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173509	exon4	c.G31A	p.G11R	.	.	.
STX6	10228	broad.mit.edu	36	1	179225743	179225743	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005819	exon5	c.G489A	p.Q163Q	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179946808	179946808	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000721	exon8	c.G1151A	p.R384H	.	.	.
ZNF648	127665	broad.mit.edu	36	1	180292706	180292706	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009992	exon2	c.C1063T	p.R355C	.	.	.
NPL	80896	broad.mit.edu	36	1	181041917	181041917	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030769	exon4	c.G157T	p.G53X	.	.	.
LAMC1	3915	broad.mit.edu	36	1	181350386	181350386	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002293	exon5	c.C1119T	p.N373N	.	.	.
RGL1	23179	broad.mit.edu	36	1	182161934	182161934	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015149	exon19	c.G2297A	p.R766H	.	.	.
EDEM3	80267	broad.mit.edu	36	1	182948262	182948262	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025191	exon14	c.C1464A	p.I488I	.	.	.
RNF2	6045	broad.mit.edu	36	1	183333939	183333939	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007212	exon5	c.A577T	p.S193C	.	.	.
C1orf25	81627	broad.mit.edu	36	1	183355949	183355949	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030934	exon15	c.G2027A	p.R676H	.	.	.
TPR	7175	broad.mit.edu	36	1	184572252	184572252	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003292	exon33	c.T4704C	p.A1568A	.	.	.
KIAA1751	85452	broad.mit.edu	36	1	1887715	1887715	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080484	exon12	c.G1356T	p.E452D	.	.	.
UBR4	23352	broad.mit.edu	36	1	19352479	19352479	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020765	exon46	c.C6735T	p.N2245N	.	.	.
UBR4	23352	broad.mit.edu	36	1	19385678	19385678	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020765	exon14	c.G1693A	p.D565N	.	.	.
CFH	3075	broad.mit.edu	36	1	194911788	194911788	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000186	exon4	c.G397A	p.G133R	.	.	.
CFH	3075	broad.mit.edu	36	1	194915407	194915407	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000186	exon6	c.T651C	p.N217N	.	.	.
CFH	3075	broad.mit.edu	36	1	194915468	194915468	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000186	exon6	c.A712G	p.N238D	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196991715	196991715	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080921	exon30	c.C3214T	p.Q1072X	.	.	.
CAMSAP1L1	23271	broad.mit.edu	36	1	199084392	199084392	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203459	exon11	c.C1872T	p.D624D	.	.	.
IGFN1	91156	broad.mit.edu	36	1	199454294	199454294	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164586	exon18	c.G9783A	p.T3261T	.	.	.
KLHL12	59349	broad.mit.edu	36	1	201146926	201146926	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021633	exon5	c.C596T	p.A199V	.	.	.
CYB5R1	51706	broad.mit.edu	36	1	201201657	201201657	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016243	exon4	c.A326G	p.Y109C	.	.	.
PPFIA4	8497	broad.mit.edu	36	1	201291209	201291209	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015053	exon3	c.C338T	p.T113M	.	.	.
MAPKAPK2	9261	broad.mit.edu	36	1	204970726	204970726	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032960	exon6	c.C762A	p.Y254X	.	.	.
PFKFB2	5208	broad.mit.edu	36	1	205307578	205307578	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018053	exon9	c.G744A	p.Q248Q	.	.	.
PFKFB2	5208	broad.mit.edu	36	1	205310271	205310271	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018053	exon12	c.G1116A	p.R372R	.	.	.
ATF3	467	broad.mit.edu	36	1	210859351	210859351	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001674	exon4	c.C377T	p.A126V	.	.	.
PTPN14	5784	broad.mit.edu	36	1	212624622	212624622	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005401	exon13	c.C1199T	p.S400L	.	.	.
USH2A	7399	broad.mit.edu	36	1	214490979	214490979	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206933	exon12	c.T2056A	p.L686M	.	.	.
EPRS	2058	broad.mit.edu	36	1	218237257	218237257	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004446	exon18	c.T2232G	p.C744W	.	.	.
RAB3GAP2	25782	broad.mit.edu	36	1	218410986	218410986	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012414	exon24	c.C2677T	p.L893L	.	.	.
MARK1	4139	broad.mit.edu	36	1	218819471	218819471	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018650	exon2	c.G204T	p.K68N	.	.	.
CNIH3	149111	broad.mit.edu	36	1	222988935	222988935	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152495	exon5	c.C359T	p.P120L	.	.	.
ACBD3	64746	broad.mit.edu	36	1	224406701	224406701	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022735	exon7	c.G1333A	p.V445M	.	.	.
CDC42BPA	8476	broad.mit.edu	36	1	225285633	225285633	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014826	exon26	c.C3416T	p.A1139V	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226605766	226605766	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052843	exon78	c.G18541A	p.E6181K	.	.	.
NUP133	55746	broad.mit.edu	36	1	227680046	227680046	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018230	exon13	c.G1677A	p.R559R	.	.	.
EPHA8	2046	broad.mit.edu	36	1	22788304	22788304	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001006943	exon5	c.G1333A	p.V445I	.	.	.
GALNT2	2590	broad.mit.edu	36	1	228405513	228405513	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004481	exon3	c.A228G	p.V76V	.	.	.
COG2	22796	broad.mit.edu	36	1	228865555	228865555	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007357	exon4	c.C346T	p.R116X	.	.	.
TTC13	79573	broad.mit.edu	36	1	229126293	229126293	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024525	exon15	c.C1731T	p.D577D	.	.	.
GNPAT	8443	broad.mit.edu	36	1	229473136	229473136	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014236	exon10	c.C1289A	p.P430H	.	.	.
EPHB2	2048	broad.mit.edu	36	1	22983651	22983651	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017449	exon3	c.C306T	p.S102S	.	.	.
HTR1D	3352	broad.mit.edu	36	1	23392802	23392802	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000864	exon1	c.C498A	p.S166S	.	.	.
MTR	4548	broad.mit.edu	36	1	235121128	235121128	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000254	exon29	c.G3080A	p.R1027Q	.	.	.
RYR2	6262	broad.mit.edu	36	1	235778445	235778445	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001035	exon26	c.G2998A	p.A1000T	.	.	.
GALE	2582	broad.mit.edu	36	1	23997789	23997789	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000403	exon4	c.A140T	p.E47V	.	.	.
WDR64	128025	broad.mit.edu	36	1	240017793	240017793	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144625	exon23	c.G2695A	p.G899R	.	.	.
CEP170	9859	broad.mit.edu	36	1	241455175	241455175	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042405	exon2	c.A31T	p.S11C	.	.	.
AHCTF1	25909	broad.mit.edu	36	1	245080708	245080708	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015446	exon33	c.G5250A	p.T1750T	.	.	.
ZNF496	84838	broad.mit.edu	36	1	245530981	245530981	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032752	exon9	c.G1227A	p.P409P	.	.	.
OR2C3	81472	broad.mit.edu	36	1	245762087	245762087	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198074	exon2	c.C350T	p.A117V	.	.	.
OR2W3	343171	broad.mit.edu	36	1	246126106	246126106	+	Missense_Mutation	SNP	G	A	A	rs61756679	unknown	TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001957	exon1	c.G595A	p.V199I	.	.	.
OR2AK2	391191	broad.mit.edu	36	1	246195677	246195677	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004491	exon1	c.A421G	p.I141V	.	.	.
OR2L13	284521	broad.mit.edu	36	1	246329770	246329770	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175911	exon3	c.C470T	p.A157V	.	.	.
OR2T33	391195	broad.mit.edu	36	1	246503278	246503278	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004695	exon1	c.G462A	p.G154G	.	.	.
ZNF593	51042	broad.mit.edu	36	1	26369675	26369675	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015871	exon3	c.C286T	p.P96S	.	.	.
SDC3	9672	broad.mit.edu	36	1	31122370	31122370	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014654	exon3	c.C486A	p.T162T	.	.	.
CCDC28B	79140	broad.mit.edu	36	1	32443408	32443408	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024296	exon6	c.C575T	p.A192V	.	.	.
AK2	204	broad.mit.edu	36	1	33252749	33252749	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001625	exon5	c.C459T	p.H153H	.	.	.
TRIM62	55223	broad.mit.edu	36	1	33398068	33398068	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018207	exon3	c.G569A	p.R190H	.	.	.
GJB5	2709	broad.mit.edu	36	1	34996214	34996214	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005268	exon2	c.C696T	p.H232H	.	.	.
WDR8	49856	broad.mit.edu	36	1	3542404	3542404	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017818	exon6	c.C567T	p.N189N	.	.	.
EIF2C1	26523	broad.mit.edu	36	1	36131996	36131996	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012199	exon5	c.A647G	p.D216G	.	.	.
EIF2C3	192669	broad.mit.edu	36	1	36293236	36293236	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177422	exon16	c.C1675T	p.R559C	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37098085	37098085	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000831	exon6	c.C907T	p.R303W	.	.	.
MEAF6	64769	broad.mit.edu	36	1	37747648	37747648	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022756	exon3	c.G289A	p.A97T	.	.	.
CDCA8	55143	broad.mit.edu	36	1	37941549	37941549	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018101	exon8	c.G527A	p.R176Q	.	.	.
MANEAL	149175	broad.mit.edu	36	1	38038048	38038048	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152496	exon2	c.C294T	p.D98D	.	.	.
BMP8A	353500	broad.mit.edu	36	1	39761359	39761359	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181809	exon6	c.G1042A	p.A348T	.	.	.
SCMH1	22955	broad.mit.edu	36	1	41287060	41287060	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172218	exon12	c.C982T	p.R328C	.	.	.
HIVEP3	59269	broad.mit.edu	36	1	41751661	41751661	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024503	exon8	c.C5818T	p.P1940S	.	.	.
PTPRF	5792	broad.mit.edu	36	1	43857945	43857945	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130440	exon28	c.C4913T	p.A1638V	.	.	.
CCDC24	149473	broad.mit.edu	36	1	44230493	44230493	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152499	exon3	c.T149A	p.L50H	.	.	.
NSUN4	387338	broad.mit.edu	36	1	46599957	46599957	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199044	exon6	c.T1007C	p.V336A	.	.	.
MOBKL2C	148932	broad.mit.edu	36	1	46851448	46851448	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145279	exon2	c.C289T	p.R97C	.	.	.
CYP4A11	1579	broad.mit.edu	36	1	47179624	47179624	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000778	exon1	c.C69A	p.S23S	.	.	.
NRD1	4898	broad.mit.edu	36	1	52066115	52066115	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002525	exon7	c.T1085C	p.F362S	.	.	.
ZFYVE9	9372	broad.mit.edu	36	1	52531937	52531937	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007324	exon10	c.C3073T	p.L1025F	.	.	.
ZFYVE9	9372	broad.mit.edu	36	1	52584362	52584362	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007324	exon18	c.C3982T	p.Q1328X	.	.	.
SLC1A7	6512	broad.mit.edu	36	1	53353113	53353113	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006671	exon3	c.C336A	p.S112S	.	.	.
DMRTB1	63948	broad.mit.edu	36	1	53703044	53703044	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033067	exon3	c.G897A	p.P299P	.	.	.
C1orf168	199920	broad.mit.edu	36	1	56961912	56961912	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004303	exon17	c.G1911T	p.K637N	.	.	.
DAB1	1600	broad.mit.edu	36	1	57383599	57383599	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021080	exon5	c.C159T	p.S53S	.	.	.
CHD5	26038	broad.mit.edu	36	1	6103830	6103830	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015557	exon33	c.G4834A	p.A1612T	.	.	.
DOCK7	85440	broad.mit.edu	36	1	62892277	62892277	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033407	exon3	c.T286C	p.C96R	.	.	.
JAK1	3716	broad.mit.edu	36	1	65105199	65105199	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002227	exon7	c.G928A	p.V310I	.	.	.
PTGER3	5733	broad.mit.edu	36	1	71285368	71285368	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198715	exon1	c.G481A	p.A161T	.	.	.
CAMTA1	23261	broad.mit.edu	36	1	7646377	7646377	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015215	exon9	c.C1183A	p.Q395K	.	.	.
CAMTA1	23261	broad.mit.edu	36	1	7721105	7721105	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015215	exon16	c.C4158T	p.C1386C	.	.	.
CTBS	1486	broad.mit.edu	36	1	84793388	84793388	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004388	exon7	c.G1040A	p.R347H	.	.	.
COL24A1	255631	broad.mit.edu	36	1	86270183	86270183	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152890	exon14	c.G2015A	p.G672D	.	.	.
HS2ST1	9653	broad.mit.edu	36	1	87311337	87311337	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134492	exon2	c.G257A	p.S86N	.	.	.
GBP3	2635	broad.mit.edu	36	1	89258884	89258884	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018284	exon2	c.C109T	p.P37S	.	.	.
GBP7	388646	broad.mit.edu	36	1	89388688	89388688	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207398	exon6	c.C784T	p.Q262X	.	.	.
LRRC8D	55144	broad.mit.edu	36	1	90173240	90173240	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134479	exon3	c.A2025G	p.E675E	.	.	.
ZNF326	284695	broad.mit.edu	36	1	90245611	90245611	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182976	exon5	c.G329A	p.R110Q	.	.	.
HFM1	164045	broad.mit.edu	36	1	91557474	91557474	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017975	exon24	c.G2644A	p.A882T	.	.	.
TGFBR3	7049	broad.mit.edu	36	1	91996782	91996782	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195683	exon4	c.C360A	p.A120A	.	.	.
ABCA4	24	broad.mit.edu	36	1	94321578	94321578	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000350	exon7	c.C776T	p.T259I	.	.	.
ABCA4	24	broad.mit.edu	36	1	94337110	94337110	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000350	exon6	c.C596T	p.A199V	.	.	.
ABCD3	5825	broad.mit.edu	36	1	94736810	94736810	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002858	exon17	c.G1451A	p.R484H	.	.	.
DPYD	1806	broad.mit.edu	36	1	97317218	97317218	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000110	exon23	c.A2980G	p.S994G	.	.	.
AGRN	375790	broad.mit.edu	36	1	977044	977044	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198576	exon33	c.C5637T	p.N1879N	.	.	.
LPPR4	9890	broad.mit.edu	36	1	99539067	99539067	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014839	exon5	c.C749T	p.S250F	.	.	.
SLC25A24	29957	broad.mit.edu	36	1	108501706	108501706	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013386	exon5	c.570delA	p.K190fs	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115328944	115328944	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003176	exon30	c.2635delA	p.K879fs	.	.	.
THEM5	284486	broad.mit.edu	36	1	150090156	150090156	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182578	exon3	c.461delC	p.P154fs	.	.	.
NTRK1	4914	broad.mit.edu	36	1	155100827	155100827	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012331	exon2	c.270delG	p.L90fs	.	.	.
C1orf106	55765	broad.mit.edu	36	1	199127353	199127353	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018265	exon1	c.62delG	p.R21fs	.	.	.
ALKBH8	91801	broad.mit.edu	36	11	106929070	106929070	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138775	exon5	c.T569C	p.V190A	.	.	.
ATM	472	broad.mit.edu	36	11	107644467	107644467	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000051	exon18	c.C2759T	p.A920V	.	.	.
C11orf87	399947	broad.mit.edu	36	11	108799856	108799856	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207645	exon2	c.G287T	p.R96M	.	.	.
RDX	5962	broad.mit.edu	36	11	109623680	109623680	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002906	exon10	c.C1048T	p.R350C	.	.	.
DLAT	1737	broad.mit.edu	36	11	111421806	111421806	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001931	exon10	c.C1300T	p.Q434X	.	.	.
NCAM1	4684	broad.mit.edu	36	11	112611065	112611065	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001076682	exon13	c.C1765T	p.R589C	.	.	.
USP28	57646	broad.mit.edu	36	11	113188255	113188255	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020886	exon16	c.C1925T	p.A642V	.	.	.
SIK3	23387	broad.mit.edu	36	11	116329997	116329997	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025164	exon3	c.G253A	p.E85K	.	.	.
CEP164	22897	broad.mit.edu	36	11	116751713	116751713	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014956	exon11	c.G1313A	p.R438Q	.	.	.
AMICA1	120425	broad.mit.edu	36	11	117579550	117579550	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153206	exon5	c.C545T	p.S182F	.	.	.
SLC37A4	2542	broad.mit.edu	36	11	118400937	118400937	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164278	exon11	c.A1250T	p.H417L	.	.	.
DPAGT1	1798	broad.mit.edu	36	11	118473809	118473809	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001382	exon6	c.C883T	p.H295Y	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1213135	1213135	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002458	exon23	c.C2796T	p.H932H	.	.	.
OR10S1	219873	broad.mit.edu	36	11	123352924	123352924	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004474	exon1	c.G685A	p.V229I	.	.	.
OR10G4	390264	broad.mit.edu	36	11	123392029	123392029	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004462	exon1	c.G538A	p.A180T	.	.	.
ROBO4	54538	broad.mit.edu	36	11	124268809	124268809	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019055	exon10	c.C1532T	p.A511V	.	.	.
FEZ1	9638	broad.mit.edu	36	11	124856686	124856686	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005103	exon3	c.G365T	p.R122M	.	.	.
FLI1	2313	broad.mit.edu	36	11	128180508	128180508	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167681	exon6	c.C594T	p.G198G	.	.	.
KCNJ5	3762	broad.mit.edu	36	11	128286637	128286637	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000890	exon2	c.C259T	p.R87C	.	.	.
PRDM10	56980	broad.mit.edu	36	11	129336026	129336026	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020228	exon2	c.C44T	p.A15V	.	.	.
ARNTL	406	broad.mit.edu	36	11	13354828	13354828	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001030273	exon16	c.A1259T	p.D420V	.	.	.
CALCA	796	broad.mit.edu	36	11	14948153	14948153	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001741	exon3	c.A131T	p.E44V	.	.	.
CTSD	1509	broad.mit.edu	36	11	1731420	1731420	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001909	exon9	c.G1128A	p.P376P	.	.	.
E2F8	79733	broad.mit.edu	36	11	19210409	19210409	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024680	exon7	c.C1014T	p.G338G	.	.	.
RIC8A	60626	broad.mit.edu	36	11	200611	200611	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021932	exon4	c.G767A	p.R256Q	.	.	.
DBX1	120237	broad.mit.edu	36	11	20135187	20135187	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029865	exon3	c.C644T	p.A215V	.	.	.
NELL1	4745	broad.mit.edu	36	11	21207561	21207561	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006157	exon14	c.G1534A	p.G512R	.	.	.
WT1	7490	broad.mit.edu	36	11	32367186	32367186	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198551	exon10	c.G903A	p.A301A	.	.	.
QSER1	79832	broad.mit.edu	36	11	32911901	32911901	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001076786	exon4	c.T2134G	p.L712V	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33523372	33523372	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012194	exon2	c.G2366T	p.R789L	.	.	.
STIM1	6786	broad.mit.edu	36	11	4064320	4064320	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003156	exon11	c.G1512A	p.T504T	.	.	.
HSD17B12	51144	broad.mit.edu	36	11	43658979	43658979	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016142	exon1	c.G26A	p.G9D	.	.	.
CRY2	1408	broad.mit.edu	36	11	45834179	45834179	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127457	exon2	c.C103T	p.R35W	.	.	.
CELF1	10658	broad.mit.edu	36	11	47455085	47455085	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198700	exon10	c.G883T	p.G295W	.	.	.
FOLH1	2346	broad.mit.edu	36	11	49151579	49151579	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193471	exon11	c.C1086T	p.H362H	.	.	.
OR51V1	283111	broad.mit.edu	36	11	5177719	5177719	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004760	exon1	c.C788A	p.P263H	.	.	.
OR51B5	282763	broad.mit.edu	36	11	5320758	5320758	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005567	exon1	c.C573T	p.T191T	.	.	.
OR4S2	219431	broad.mit.edu	36	11	55175782	55175782	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004059	exon1	c.T827A	p.I276N	.	.	.
OR5M8	219484	broad.mit.edu	36	11	56014578	56014578	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005282	exon1	c.C845A	p.P282H	.	.	.
TRIM22	10346	broad.mit.edu	36	11	5674217	5674217	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199573	exon2	c.A179G	p.Q60R	.	.	.
SERPING1	710	broad.mit.edu	36	11	57138528	57138528	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000062	exon8	c.C1401A	p.T467T	.	.	.
OR5B3	441608	broad.mit.edu	36	11	57926992	57926992	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005469	exon1	c.T467A	p.I156N	.	.	.
OR5A2	219981	broad.mit.edu	36	11	58946365	58946365	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001954	exon1	c.T638C	p.L213P	.	.	.
SCGB1D1	10648	broad.mit.edu	36	11	61716115	61716115	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006552	exon2	c.G67A	p.V23I	.	.	.
CCKBR	887	broad.mit.edu	36	11	6248504	6248504	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176875	exon4	c.G706A	p.V236M	.	.	.
LGALS12	85329	broad.mit.edu	36	11	63040346	63040346	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142536	exon8	c.G889T	p.G297W	.	.	.
RARRES3	5920	broad.mit.edu	36	11	63068741	63068741	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004585	exon3	c.G191A	p.R64H	.	.	.
SLC22A12	116085	broad.mit.edu	36	11	64117787	64117787	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153378	exon4	c.C103T	p.R35W	.	.	.
DNHD1	144132	broad.mit.edu	36	11	6546475	6546475	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144666	exon39	c.G12666A	p.V4222V	.	.	.
CATSPER1	117144	broad.mit.edu	36	11	65545846	65545846	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053054	exon3	c.C1510A	p.L504I	.	.	.
KLC2	64837	broad.mit.edu	36	11	65790159	65790159	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134775	exon14	c.G1622T	p.R541M	.	.	.
ZDHHC24	254359	broad.mit.edu	36	11	66063665	66063665	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207340	exon3	c.G766A	p.V256I	.	.	.
IGHMBP2	3508	broad.mit.edu	36	11	68458522	68458522	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002180	exon11	c.G1552A	p.V518I	.	.	.
NLRP14	338323	broad.mit.edu	36	11	7016537	7016537	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176822	exon2	c.T144C	p.N48N	.	.	.
ARAP1	116985	broad.mit.edu	36	11	72100978	72100978	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040118	exon7	c.G933A	p.A311A	.	.	.
OLFML1	283298	broad.mit.edu	36	11	7487532	7487532	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198474	exon3	c.G746A	p.R249Q	.	.	.
OMP	4975	broad.mit.edu	36	11	76491799	76491799	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006189	exon1	c.C266A	p.P89H	.	.	.
CYB5R2	51700	broad.mit.edu	36	11	7650612	7650612	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016229	exon2	c.G21A	p.E7E	.	.	.
MYO7A	4647	broad.mit.edu	36	11	76536545	76536545	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127179	exon4	c.G186A	p.T62T	.	.	.
SYTL2	54843	broad.mit.edu	36	11	85112829	85112829	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206927	exon1	c.G2319A	p.S773S	.	.	.
SYTL2	54843	broad.mit.edu	36	11	85123222	85123222	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032943	exon7	c.G795A	p.A265A	.	.	.
CCDC81	60494	broad.mit.edu	36	11	85801111	85801111	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021827	exon10	c.C983A	p.P328H	.	.	.
FAT3	120114	broad.mit.edu	36	11	92182791	92182791	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008781	exon12	c.C9382A	p.P3128T	.	.	.
FAT3	120114	broad.mit.edu	36	11	92239815	92239815	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008781	exon21	c.G11919A	p.T3973T	.	.	.
MED17	9440	broad.mit.edu	36	11	93180415	93180415	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004268	exon10	c.A1550G	p.Q517R	.	.	.
FOLR4	390243	broad.mit.edu	36	11	93680341	93680341	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199206	exon4	c.C588T	p.A196A	.	.	.
MAML2	84441	broad.mit.edu	36	11	95351874	95351874	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032427	exon5	c.C3357T	p.G1119G	.	.	.
DTX4	23220	broad.mit.edu	36	11	58715185	58715185	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015177	exon5	c.1182delA	p.L394fs	.	.	.
GRM5	2915	broad.mit.edu	36	11	87881553	87881553	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000842	exon9	c.3398delC	p.P1133fs	.	.	.
PRDM13	59336	broad.mit.edu	36	6	100163341	100163341	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021620	exon2	c.C148T	p.R50C	.	.	.
SIM1	6492	broad.mit.edu	36	6	100945512	100945512	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005068	exon11	c.C1747A	p.Q583K	.	.	.
PREP	5550	broad.mit.edu	36	6	105832939	105832939	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002726	exon15	c.C1906A	p.L636I	.	.	.
PREP	5550	broad.mit.edu	36	6	105836417	105836417	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002726	exon14	c.G1735A	p.G579R	.	.	.
RTN4IP1	84816	broad.mit.edu	36	6	107146792	107146792	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032730	exon6	c.C746T	p.A249V	.	.	.
RSPH4A	345895	broad.mit.edu	36	6	117058330	117058330	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161664	exon4	c.C1702T	p.Q568X	.	.	.
GPRC6A	222545	broad.mit.edu	36	6	117223600	117223600	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148963	exon5	c.A1640G	p.N547S	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119343089	119343089	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024581	exon10	c.G2214T	p.E738D	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119387328	119387328	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024581	exon2	c.G509A	p.R170Q	.	.	.
C6orf170	221322	broad.mit.edu	36	6	121684639	121684639	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152730	exon2	c.C156A	p.N52K	.	.	.
TAAR5	9038	broad.mit.edu	36	6	132952197	132952197	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003967	exon1	c.C322T	p.R108C	.	.	.
TAAR2	9287	broad.mit.edu	36	6	132980527	132980527	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033080	exon2	c.C511T	p.P171S	.	.	.
VTA1	51534	broad.mit.edu	36	6	142581363	142581363	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016485	exon8	c.G814T	p.A272S	.	.	.
GPR126	57211	broad.mit.edu	36	6	142778764	142778764	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001032394	exon19	c.G2724A	p.L908L	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143123415	143123415	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006734	exon9	c.G5703T	p.E1901D	.	.	.
UTRN	7402	broad.mit.edu	36	6	144803187	144803187	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007124	exon12	c.C1399T	p.Q467X	.	.	.
UST	10090	broad.mit.edu	36	6	149384244	149384244	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005715	exon7	c.C871T	p.L291L	.	.	.
PCMT1	5110	broad.mit.edu	36	6	150135990	150135990	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005389	exon3	c.C358A	p.P120T	.	.	.
PPP1R14C	81706	broad.mit.edu	36	6	150577603	150577603	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030949	exon2	c.A337G	p.I113V	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152485331	152485331	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015293	exon61	c.T9899C	p.L3300P	.	.	.
RBM16	22828	broad.mit.edu	36	6	155150726	155150726	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014892	exon4	c.G199T	p.D67Y	.	.	.
RBM16	22828	broad.mit.edu	36	6	155195184	155195184	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014892	exon20	c.C2779T	p.R927C	.	.	.
ARID1B	57492	broad.mit.edu	36	6	157192230	157192230	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017519	exon2	c.C1720T	p.Q574X	.	.	.
PARK2	5071	broad.mit.edu	36	6	162784373	162784373	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004562	exon2	c.A130C	p.I44L	.	.	.
QKI	9444	broad.mit.edu	36	6	163796327	163796327	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206855	exon2	c.T169C	p.Y57H	.	.	.
QKI	9444	broad.mit.edu	36	6	163819868	163819868	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206855	exon3	c.G352A	p.G118R	.	.	.
UNC93A	54346	broad.mit.edu	36	6	167641290	167641290	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143947	exon6	c.T884C	p.L295P	.	.	.
MLLT4	4301	broad.mit.edu	36	6	168087004	168087004	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040000	exon24	c.G3218T	p.R1073M	.	.	.
TBP	6908	broad.mit.edu	36	6	170720669	170720669	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172085	exon5	c.T662C	p.V221A	.	.	.
CAP2	10486	broad.mit.edu	36	6	17664603	17664603	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006366	exon13	c.C1385T	p.A462V	.	.	.
NHLRC1	378884	broad.mit.edu	36	6	18229973	18229973	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198586	exon1	c.C844T	p.P282S	.	.	.
MBOAT1	154141	broad.mit.edu	36	6	20221189	20221189	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080480	exon11	c.C1106A	p.P369H	.	.	.
GPLD1	2822	broad.mit.edu	36	6	24558053	24558053	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001503	exon15	c.C1389T	p.G463G	.	.	.
SLC17A3	10786	broad.mit.edu	36	6	25976554	25976554	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098486	exon2	c.G41T	p.S14I	.	.	.
HIST1H1A	3024	broad.mit.edu	36	6	26125326	26125326	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005325	exon1	c.C614T	p.A205V	.	.	.
HIST1H2AE	3012	broad.mit.edu	36	6	26325246	26325246	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021052	exon1	c.C65T	p.A22V	.	.	.
BTN3A3	10384	broad.mit.edu	36	6	26560394	26560394	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006994	exon11	c.A1531G	p.I511V	.	.	.
BTN1A1	696	broad.mit.edu	36	6	26609515	26609515	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001732	exon1	c.G22A	p.G8S	.	.	.
PGBD1	84547	broad.mit.edu	36	6	28359877	28359877	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184743	exon2	c.G308A	p.C103Y	.	.	.
DHX16	8449	broad.mit.edu	36	6	30740896	30740896	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003587	exon6	c.G1056A	p.K352K	.	.	.
MDC1	9656	broad.mit.edu	36	6	30789023	30789023	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014641	exon5	c.T675C	p.G225G	.	.	.
GTF2H4	2968	broad.mit.edu	36	6	30985232	30985232	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001517	exon3	c.T179C	p.L60P	.	.	.
BAT2	7916	broad.mit.edu	36	6	31711015	31711015	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004638	exon22	c.G5288A	p.G1763D	.	.	.
CSNK2B	1460	broad.mit.edu	36	6	31745642	31745642	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001320	exon7	c.C608T	p.A203V	.	.	.
MSH5	4439	broad.mit.edu	36	6	31836537	31836537	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025259	exon20	c.T1955C	p.I652T	.	.	.
BTNL2	56244	broad.mit.edu	36	6	32478729	32478729	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019602	exon3	c.G670A	p.V224I	.	.	.
TAP2	6891	broad.mit.edu	36	6	32908541	32908541	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018833	exon6	c.G984A	p.A328A	.	.	.
COL11A2	1302	broad.mit.edu	36	6	33247488	33247488	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080681	exon40	c.G2872A	p.A958T	.	.	.
COL11A2	1302	broad.mit.edu	36	6	33250309	33250309	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080681	exon29	c.T2145C	p.P715P	.	.	.
PNPLA1	285848	broad.mit.edu	36	6	36370021	36370021	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145717	exon4	c.G581A	p.S194N	.	.	.
USP49	25862	broad.mit.edu	36	6	41881941	41881941	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018561	exon4	c.G759A	p.T253T	.	.	.
CUL7	9820	broad.mit.edu	36	6	43122054	43122054	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014780	exon12	c.C2558A	p.A853D	.	.	.
SLC29A1	2030	broad.mit.edu	36	6	44305501	44305501	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001078174	exon4	c.T309C	p.H103H	.	.	.
AARS2	57505	broad.mit.edu	36	6	44380837	44380837	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020745	exon11	c.G1511A	p.R504H	.	.	.
RUNX2	860	broad.mit.edu	36	6	45622799	45622799	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004348	exon7	c.A1303G	p.T435A	.	.	.
PKHD1	5314	broad.mit.edu	36	6	52049066	52049066	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170724	exon6	c.G415A	p.V139I	.	.	.
KHDRBS2	202559	broad.mit.edu	36	6	62465072	62465072	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152688	exon8	c.C939A	p.A313A	.	.	.
PHF3	23469	broad.mit.edu	36	6	64481538	64481538	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015153	exon15	c.C6095T	p.T2032I	.	.	.
FAM135A	57579	broad.mit.edu	36	6	71291797	71291797	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001162529	exon13	c.C2289A	p.A763A	.	.	.
MTO1	25821	broad.mit.edu	36	6	74239998	74239998	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001123226	exon4	c.G725A	p.R242Q	.	.	.
ELOVL4	6785	broad.mit.edu	36	6	80685938	80685938	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022726	exon5	c.A587G	p.Y196C	.	.	.
AKIRIN2	55122	broad.mit.edu	36	6	88442329	88442329	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018064	exon4	c.T569C	p.I190T	.	.	.
MAP3K7	6885	broad.mit.edu	36	6	91338151	91338151	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145333	exon2	c.G217T	p.A73S	.	.	.
EPHA7	2045	broad.mit.edu	36	6	94177504	94177504	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004440	exon3	c.A268G	p.I90V	.	.	.
KIAA0776	23376	broad.mit.edu	36	6	97090904	97090904	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015323	exon8	c.A719G	p.D240G	.	.	.
GPR63	81491	broad.mit.edu	36	6	97353286	97353286	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143957	exon3	c.A1043T	p.N348I	.	.	.
C6orf167	253714	broad.mit.edu	36	6	97719866	97719866	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198468	exon21	c.G3198C	p.K1066N	.	.	.
AGPAT4	56895	broad.mit.edu	36	6	161480579	161480579	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020133	exon8	c.907delC	p.R303fs	.	.	.
C6orf222	389384	broad.mit.edu	36	6	36402484	36402484	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010903	exon5	c.817delG	p.V273fs	.	.	.
MYH8	4626	broad.mit.edu	36	17	10264080	10264080	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002472	exon3	c.G190A	p.V64I	.	.	.
MYH4	4622	broad.mit.edu	36	17	10299729	10299729	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017533	exon19	c.G2101A	p.G701S	.	.	.
NCOR1	9611	broad.mit.edu	36	17	15935989	15935989	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190440	exon21	c.C2977T	p.R993W	.	.	.
RTN4RL1	146760	broad.mit.edu	36	17	1786956	1786956	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178568	exon2	c.T910C	p.C304R	.	.	.
MYO15A	51168	broad.mit.edu	36	17	17995457	17995457	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016239	exon39	c.C7678T	p.R2560W	.	.	.
TOP3A	7156	broad.mit.edu	36	17	18143621	18143621	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004618	exon9	c.C967T	p.R323W	.	.	.
FBXW10	10517	broad.mit.edu	36	17	18616665	18616665	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031456	exon12	c.T2222C	p.L741P	.	.	.
GRAP	10750	broad.mit.edu	36	17	18868271	18868271	+	Silent	SNP	G	A	A	rs9893211	by-hapmap	TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006613	exon4	c.C450T	p.D150D	.	.	.
SPECC1	92521	broad.mit.edu	36	17	20049441	20049441	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001033555	exon2	c.G1244A	p.R415Q	.	.	.
MAP2K3	5606	broad.mit.edu	36	17	21158119	21158119	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002756	exon12	c.T941C	p.L314P	.	.	.
NLK	51701	broad.mit.edu	36	17	23542313	23542313	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016231	exon9	c.C1376A	p.T459N	.	.	.
SARM1	23098	broad.mit.edu	36	17	23735526	23735526	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015077	exon3	c.C1111T	p.P371S	.	.	.
FOXN1	8456	broad.mit.edu	36	17	23885507	23885507	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003593	exon6	c.G959A	p.R320Q	.	.	.
RAP1GAP2	23108	broad.mit.edu	36	17	2813920	2813920	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015085	exon7	c.G300A	p.P100P	.	.	.
ACACA	31	broad.mit.edu	36	17	32619490	32619490	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198834	exon39	c.G4616A	p.R1539H	.	.	.
DUSP14	11072	broad.mit.edu	36	17	32946763	32946763	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007026	exon3	c.C276A	p.T92T	.	.	.
GPR179	440435	broad.mit.edu	36	17	33736346	33736346	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004334	exon11	c.C6632T	p.A2211V	.	.	.
SRCIN1	80725	broad.mit.edu	36	17	33972600	33972600	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025248	exon6	c.G823A	p.G275R	.	.	.
TRPV1	7442	broad.mit.edu	36	17	3427181	3427181	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018727	exon12	c.G1768A	p.G590R	.	.	.
NEUROD2	4761	broad.mit.edu	36	17	35016118	35016118	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006160	exon2	c.G261A	p.E87E	.	.	.
PGAP3	93210	broad.mit.edu	36	17	35095765	35095765	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033419	exon2	c.G215A	p.C72Y	.	.	.
PSMD3	5709	broad.mit.edu	36	17	35405208	35405208	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002809	exon9	c.C1222T	p.R408C	.	.	.
ITGAE	3682	broad.mit.edu	36	17	3603954	3603954	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002208	exon13	c.G1399A	p.V467M	.	.	.
KRT28	162605	broad.mit.edu	36	17	36208121	36208121	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181535	exon3	c.C582T	p.N194N	.	.	.
KRT23	25984	broad.mit.edu	36	17	36346109	36346109	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015515	exon2	c.C273T	p.R91R	.	.	.
ATP6V0A1	535	broad.mit.edu	36	17	37899897	37899897	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130021	exon12	c.G1194A	p.T398T	.	.	.
FAM134C	162427	broad.mit.edu	36	17	38014696	38014696	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178126	exon1	c.C173T	p.A58V	.	.	.
SLC4A1	6521	broad.mit.edu	36	17	39691479	39691479	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000342	exon10	c.G915T	p.G305G	.	.	.
ANKFY1	51479	broad.mit.edu	36	17	4034927	4034927	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016376	exon12	c.C1634T	p.T545M	.	.	.
ITGA3	3675	broad.mit.edu	36	17	45511199	45511199	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002204	exon19	c.G2310A	p.R770R	.	.	.
KIF1C	10749	broad.mit.edu	36	17	4864663	4864663	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006612	exon20	c.C1903T	p.Q635X	.	.	.
MPO	4353	broad.mit.edu	36	17	53704188	53704188	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000250	exon11	c.G1857A	p.T619T	.	.	.
BZRAP1	9256	broad.mit.edu	36	17	53752480	53752480	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004758	exon12	c.G1483A	p.D495N	.	.	.
RNF43	54894	broad.mit.edu	36	17	53847795	53847795	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017763	exon2	c.T143C	p.I48T	.	.	.
VPS53	55275	broad.mit.edu	36	17	547465	547465	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128159	exon4	c.T228C	p.D76D	.	.	.
MED13	9969	broad.mit.edu	36	17	57397344	57397344	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005121	exon20	c.T4649C	p.V1550A	.	.	.
MARCH10	162333	broad.mit.edu	36	17	58219587	58219587	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100875	exon3	c.T196G	p.S66A	.	.	.
TANC2	26115	broad.mit.edu	36	17	58836285	58836285	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025185	exon18	c.G3180T	p.V1060V	.	.	.
CACNG5	27091	broad.mit.edu	36	17	62311534	62311534	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014404	exon4	c.C864T	p.S288S	.	.	.
CACNG4	27092	broad.mit.edu	36	17	62457572	62457572	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014405	exon4	c.C974T	p.T325I	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64425149	64425149	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007168	exon15	c.G1966A	p.A656T	.	.	.
ASGR2	433	broad.mit.edu	36	17	6945734	6945734	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001181	exon9	c.G820A	p.G274R	.	.	.
SAP30BP	29115	broad.mit.edu	36	17	71175142	71175142	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013260	exon1	c.G95A	p.G32D	.	.	.
SLC2A4	6517	broad.mit.edu	36	17	7128607	7128607	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042	exon7	c.T807C	p.R269R	.	.	.
NEURL4	84461	broad.mit.edu	36	17	7166798	7166798	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032442	exon16	c.C2705T	p.S902F	.	.	.
MFSD11	79157	broad.mit.edu	36	17	72275118	72275118	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024311	exon10	c.T738C	p.T246T	.	.	.
CHD3	1107	broad.mit.edu	36	17	7750952	7750952	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005852	exon30	c.C4544T	p.P1515L	.	.	.
C17orf68	80169	broad.mit.edu	36	17	8079910	8079910	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025099	exon7	c.C1170T	p.G390G	.	.	.
ABR	29	broad.mit.edu	36	17	922635	922635	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021962	exon8	c.G863A	p.R288H	.	.	.
WDR16	146845	broad.mit.edu	36	17	9479561	9479561	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145054	exon11	c.G1435A	p.A479T	.	.	.
USP43	124739	broad.mit.edu	36	17	9545543	9545543	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153210	exon12	c.G1812A	p.T604T	.	.	.
APOH	350	broad.mit.edu	36	17	61643489	61643489	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000042	exon6	c.663delA	p.K221fs	.	.	.
ADAMTS5	11096	broad.mit.edu	36	21	27218529	27218529	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007038	exon8	c.C2507T	p.A836V	.	.	.
SFRS15	57466	broad.mit.edu	36	21	31988434	31988434	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145444	exon10	c.C1231T	p.R411X	.	.	.
SYNJ1	8867	broad.mit.edu	36	21	32988491	32988491	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003895	exon6	c.T824C	p.V275A	.	.	.
DNAJC28	54943	broad.mit.edu	36	21	33782549	33782549	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040192	exon2	c.A1022G	p.Y341C	.	.	.
ITSN1	6453	broad.mit.edu	36	21	34112536	34112536	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001132	exon23	c.C2823T	p.T941T	.	.	.
DOPEY2	9980	broad.mit.edu	36	21	36532864	36532864	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005128	exon17	c.T2871C	p.F957F	.	.	.
RIPK4	54101	broad.mit.edu	36	21	42034860	42034860	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020639	exon8	c.G1562A	p.R521Q	.	.	.
C21orf70	85395	broad.mit.edu	36	21	45204493	45204493	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058190	exon3	c.C334T	p.R112C	.	.	.
MCM3AP	8888	broad.mit.edu	36	21	46511449	46511449	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003906	exon10	c.G2664A	p.A888A	.	.	.
TEKT5	146279	broad.mit.edu	36	16	10637164	10637164	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144674	exon6	c.G1199A	p.R400Q	.	.	.
ERCC4	2072	broad.mit.edu	36	16	13949124	13949124	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005236	exon11	c.G2170T	p.V724L	.	.	.
ABCC6	368	broad.mit.edu	36	16	16199469	16199469	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171	exon10	c.C1248T	p.D416D	.	.	.
XYLT1	64131	broad.mit.edu	36	16	17142569	17142569	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022166	exon7	c.C1529T	p.T510I	.	.	.
ZP2	7783	broad.mit.edu	36	16	21118488	21118488	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003460	exon16	c.G1831A	p.V611I	.	.	.
GGA2	23062	broad.mit.edu	36	16	23414563	23414563	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015044	exon2	c.G129A	p.W43X	.	.	.
ARHGAP17	55114	broad.mit.edu	36	16	24878574	24878574	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001006634	exon9	c.T643C	p.L215L	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2752539	2752539	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016333	exon11	c.G2009A	p.R670H	.	.	.
TUFM	7284	broad.mit.edu	36	16	28761871	28761871	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003321	exon10	c.C1294A	p.R432R	.	.	.
TBC1D10B	26000	broad.mit.edu	36	16	30277039	30277039	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015527	exon9	c.C2154T	p.S718S	.	.	.
ZNF768	79724	broad.mit.edu	36	16	30443356	30443356	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024671	exon2	c.G1606A	p.A536T	.	.	.
ZNF764	92595	broad.mit.edu	36	16	30474064	30474064	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172679	exon3	c.G1176A	p.P392P	.	.	.
ZNF688	146542	broad.mit.edu	36	16	30490314	30490314	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145271	exon1	c.G138A	p.A46A	.	.	.
SETD1A	9739	broad.mit.edu	36	16	30884664	30884664	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014712	exon8	c.C1961T	p.P654L	.	.	.
SETD1A	9739	broad.mit.edu	36	16	30898251	30898251	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014712	exon14	c.G3643A	p.A1215T	.	.	.
HSD3B7	80270	broad.mit.edu	36	16	30905491	30905491	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025193	exon5	c.G496A	p.A166T	.	.	.
STX1B	112755	broad.mit.edu	36	16	30912041	30912041	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052874	exon9	c.G697A	p.E233K	.	.	.
ZNF205	7755	broad.mit.edu	36	16	3106468	3106468	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042428	exon5	c.C403T	p.R135W	.	.	.
ZNF75A	7627	broad.mit.edu	36	16	3307640	3307640	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153028	exon6	c.T661C	p.W221R	.	.	.
NMRAL1	57407	broad.mit.edu	36	16	4459450	4459450	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020677	exon3	c.G58A	p.V20M	.	.	.
VPS35	55737	broad.mit.edu	36	16	45270562	45270562	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018206	exon6	c.A514G	p.T172A	.	.	.
ABCC11	85320	broad.mit.edu	36	16	46770070	46770070	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145186	exon24	c.G3287A	p.R1096Q	.	.	.
ZNF500	26048	broad.mit.edu	36	16	4742787	4742787	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021646	exon6	c.G1034A	p.R345H	.	.	.
NKD1	85407	broad.mit.edu	36	16	49140854	49140854	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033119	exon3	c.G79A	p.A27T	.	.	.
NKD1	85407	broad.mit.edu	36	16	49216956	49216956	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033119	exon6	c.G426A	p.L142L	.	.	.
SEC14L5	9717	broad.mit.edu	36	16	4949369	4949369	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014692	exon2	c.C44T	p.P15L	.	.	.
SLC12A3	6559	broad.mit.edu	36	16	55470981	55470981	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000339	exon11	c.G1362A	p.A454A	.	.	.
NLRC5	84166	broad.mit.edu	36	16	55617675	55617675	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032206	exon6	c.T1319C	p.M440T	.	.	.
ARL2BP	23568	broad.mit.edu	36	16	55840033	55840033	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012106	exon3	c.T184C	p.Y62H	.	.	.
MMP15	4324	broad.mit.edu	36	16	56631345	56631345	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002428	exon4	c.G506A	p.R169H	.	.	.
CCDC113	29070	broad.mit.edu	36	16	56849920	56849920	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142302	exon3	c.C376T	p.R126C	.	.	.
FHOD1	29109	broad.mit.edu	36	16	65829527	65829527	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013241	exon6	c.G553T	p.G185C	.	.	.
KCTD19	146212	broad.mit.edu	36	16	65885540	65885540	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100915	exon12	c.C1626T	p.C542C	.	.	.
FAM65A	79567	broad.mit.edu	36	16	66133412	66133412	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193522	exon13	c.G1234A	p.E412K	.	.	.
TSNAXIP1	55815	broad.mit.edu	36	16	66415039	66415039	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018430	exon5	c.G235T	p.E79X	.	.	.
WWP2	11060	broad.mit.edu	36	16	68479612	68479612	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199423	exon9	c.G873A	p.Q291Q	.	.	.
IL34	146433	broad.mit.edu	36	16	69251127	69251127	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172771	exon6	c.C505T	p.R169W	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69685315	69685315	+	Missense_Mutation	SNP	C	T	T	rs7200485	by-cluster,by-frequency,by-2hit-2allele,by-hapmap	TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032821	exon11	c.G1352A	p.R451Q	.	.	.
ZNF19	7567	broad.mit.edu	36	16	70067202	70067202	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006961	exon6	c.G749C	p.C250S	.	.	.
CHST4	10164	broad.mit.edu	36	16	70128507	70128507	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166395	exon2	c.A426G	p.P142P	.	.	.
AP1G1	164	broad.mit.edu	36	16	70330725	70330725	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001030007	exon21	c.G2029A	p.A677T	.	.	.
ZNF821	55565	broad.mit.edu	36	16	70451807	70451807	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017530	exon6	c.G728A	p.R243Q	.	.	.
DHODH	1723	broad.mit.edu	36	16	70603634	70603634	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001361	exon2	c.G206A	p.R69Q	.	.	.
CLEC18B	497190	broad.mit.edu	36	16	73000985	73000985	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011880	exon12	c.C1294T	p.R432C	.	.	.
GLG1	2734	broad.mit.edu	36	16	73087856	73087856	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145666	exon4	c.A929G	p.E310G	.	.	.
ADAMTS18	170692	broad.mit.edu	36	16	75959008	75959008	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199355	exon4	c.C609T	p.Y203Y	.	.	.
VAT1L	57687	broad.mit.edu	36	16	76380284	76380284	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020927	exon1	c.C204T	p.D68D	.	.	.
SLC38A8	146167	broad.mit.edu	36	16	82600925	82600925	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080442	exon10	c.C1273A	p.Q425K	.	.	.
ZDHHC7	55625	broad.mit.edu	36	16	83581645	83581645	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017740	exon3	c.G81A	p.S27S	.	.	.
ZC3H18	124245	broad.mit.edu	36	16	87193755	87193755	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144604	exon6	c.G986T	p.R329M	.	.	.
CHMP1A	5119	broad.mit.edu	36	16	88245517	88245517	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001083314	exon2	c.G46A	p.G16R	.	.	.
FANCA	2175	broad.mit.edu	36	16	88361131	88361131	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000135	exon27	c.A2520G	p.A840A	.	.	.
DNAJA3	9093	broad.mit.edu	36	16	4438737	4438737	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135110	exon9	c.1128delC	p.I376fs	.	.	.
C18orf19	125228	broad.mit.edu	36	18	13672057	13672057	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152352	exon2	c.G20A	p.R7Q	.	.	.
NPC1	4864	broad.mit.edu	36	18	19369456	19369456	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000271	exon22	c.C3452T	p.A1151V	.	.	.
OSBPL1A	114876	broad.mit.edu	36	18	20166973	20166973	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080597	exon7	c.C556T	p.R186W	.	.	.
AQP4	361	broad.mit.edu	36	18	22690333	22690333	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001650	exon5	c.A812G	p.Q271R	.	.	.
CDH2	1000	broad.mit.edu	36	18	23819696	23819696	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001792	exon12	c.C1769T	p.T590M	.	.	.
FAM59A	64762	broad.mit.edu	36	18	28121871	28121871	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022751	exon4	c.G687A	p.M229I	.	.	.
ZSCAN30	100101467	broad.mit.edu	36	18	31098144	31098144	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001112734	exon2	c.T171C	p.S57S	.	.	.
COLEC12	81035	broad.mit.edu	36	18	336456	336456	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130386	exon5	c.T1166C	p.L389P	.	.	.
ST8SIA5	29906	broad.mit.edu	36	18	42514431	42514431	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013305	exon7	c.G703A	p.V235M	.	.	.
KATNAL2	83473	broad.mit.edu	36	18	42881318	42881318	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031303	exon15	c.G1345A	p.A449T	.	.	.
ZBTB7C	201501	broad.mit.edu	36	18	43820723	43820723	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039360	exon2	c.G754A	p.A252T	.	.	.
MYO5B	4645	broad.mit.edu	36	18	45685166	45685166	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080467	exon20	c.G2445T	p.A815A	.	.	.
DCC	1630	broad.mit.edu	36	18	48843728	48843728	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005215	exon6	c.T1041A	p.D347E	.	.	.
NEDD4L	23327	broad.mit.edu	36	18	54184324	54184324	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015277	exon20	c.G1887A	p.W629X	.	.	.
NEDD4L	23327	broad.mit.edu	36	18	54186053	54186053	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015277	exon21	c.C2099T	p.A700V	.	.	.
ZNF532	55205	broad.mit.edu	36	18	54736721	54736721	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018181	exon4	c.C222T	p.S74S	.	.	.
HMSD	284293	broad.mit.edu	36	18	59772667	59772667	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001123366	exon3	c.C118T	p.R40X	.	.	.
FBXO15	201456	broad.mit.edu	36	18	69891711	69891711	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152676	exon10	c.G1270A	p.A424T	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70472682	70472682	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146190	exon1	c.C719T	p.P240L	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70718266	70718266	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017757	exon4	c.T5003C	p.L1668P	.	.	.
ZNF236	7776	broad.mit.edu	36	18	72749318	72749318	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007345	exon14	c.C2346T	p.D782D	.	.	.
ADNP2	22850	broad.mit.edu	36	18	75995366	75995366	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014913	exon4	c.G1079A	p.G360E	.	.	.
KIAA0802	23255	broad.mit.edu	36	18	8783003	8783003	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015210	exon8	c.G1895C	p.G632A	.	.	.
TWSG1	57045	broad.mit.edu	36	18	9389374	9389374	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020648	exon5	c.A521G	p.D174G	.	.	.
DCBLD2	131566	broad.mit.edu	36	3	100003166	100003166	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080927	exon14	c.G1688A	p.G563D	.	.	.
FILIP1L	11259	broad.mit.edu	36	3	101131410	101131410	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182909	exon3	c.T406C	p.Y136H	.	.	.
IRAK2	3656	broad.mit.edu	36	3	10181688	10181688	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001570	exon1	c.G50A	p.C17Y	.	.	.
IMPG2	50939	broad.mit.edu	36	3	102446191	102446191	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016247	exon13	c.A1674G	p.S558S	.	.	.
SENP7	57337	broad.mit.edu	36	3	102527486	102527486	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020654	exon24	c.C3144T	p.S1048S	.	.	.
FAM55C	91775	broad.mit.edu	36	3	103002866	103002866	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134456	exon5	c.G191A	p.G64D	.	.	.
ATP2B2	491	broad.mit.edu	36	3	10345508	10345508	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001683	exon20	c.C3587T	p.T1196M	.	.	.
ATP2B2	491	broad.mit.edu	36	3	10375396	10375396	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001683	exon11	c.C1980T	p.I660I	.	.	.
CBLB	868	broad.mit.edu	36	3	106935548	106935548	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170662	exon9	c.T1198C	p.W400R	.	.	.
SLC6A11	6538	broad.mit.edu	36	3	10860939	10860939	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014229	exon5	c.G664A	p.G222R	.	.	.
MYH15	22989	broad.mit.edu	36	3	109666346	109666346	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014981	exon16	c.G1620A	p.M540I	.	.	.
SLC6A1	6529	broad.mit.edu	36	3	11043007	11043007	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003042	exon10	c.A1040G	p.H347R	.	.	.
SLC9A10	285335	broad.mit.edu	36	3	113403832	113403832	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183061	exon18	c.A2277G	p.I759M	.	.	.
CD200R1	131450	broad.mit.edu	36	3	114130732	114130732	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138939	exon4	c.T515C	p.V172A	.	.	.
SPICE1	152185	broad.mit.edu	36	3	114651971	114651971	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144718	exon15	c.G2225A	p.R742H	.	.	.
KIAA1407	57577	broad.mit.edu	36	3	115203158	115203158	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020817	exon13	c.C2137T	p.R713X	.	.	.
POLQ	10721	broad.mit.edu	36	3	122731269	122731269	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199420	exon7	c.T1021C	p.L341L	.	.	.
FBXO40	51725	broad.mit.edu	36	3	122823544	122823544	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016298	exon3	c.C578T	p.A193V	.	.	.
FBXO40	51725	broad.mit.edu	36	3	122824269	122824269	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016298	exon3	c.C1303T	p.P435S	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122898108	122898108	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004487	exon13	c.G3937A	p.E1313K	.	.	.
SEMA5B	54437	broad.mit.edu	36	3	124113519	124113519	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031702	exon20	c.G2984T	p.G995V	.	.	.
MYLK	4638	broad.mit.edu	36	3	124901842	124901842	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053025	exon18	c.C3163T	p.P1055S	.	.	.
KALRN	8997	broad.mit.edu	36	3	125586521	125586521	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003947	exon11	c.A1904C	p.Q635P	.	.	.
HEG1	57493	broad.mit.edu	36	3	126215071	126215071	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020733	exon6	c.T2042C	p.V681A	.	.	.
NPHP3	27031	broad.mit.edu	36	3	133886211	133886211	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153240	exon24	c.A3447G	p.K1149K	.	.	.
NUP210	23225	broad.mit.edu	36	3	13396214	13396214	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024923	exon7	c.C825T	p.S275S	.	.	.
PCCB	5096	broad.mit.edu	36	3	137502596	137502596	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178014	exon10	c.C979A	p.P327T	.	.	.
ARMC8	25852	broad.mit.edu	36	3	139446670	139446670	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213654	exon13	c.G1047A	p.K349K	.	.	.
SLC25A36	55186	broad.mit.edu	36	3	142175517	142175517	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001104647	exon6	c.C722T	p.T241I	.	.	.
FGD5	152273	broad.mit.edu	36	3	14837305	14837305	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152536	exon1	c.A1723G	p.R575G	.	.	.
NR2C2	7182	broad.mit.edu	36	3	15059488	15059488	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003298	exon15	c.A1817G	p.Y606C	.	.	.
COMMD2	51122	broad.mit.edu	36	3	150942081	150942081	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016094	exon5	c.C517T	p.L173F	.	.	.
EIF2A	83939	broad.mit.edu	36	3	151768678	151768678	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032025	exon9	c.C720T	p.S240S	.	.	.
SIAH2	6478	broad.mit.edu	36	3	151942751	151942751	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005067	exon2	c.G842A	p.R281H	.	.	.
SIAH2	6478	broad.mit.edu	36	3	151942848	151942848	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005067	exon2	c.G745A	p.V249I	.	.	.
MME	4311	broad.mit.edu	36	3	156342779	156342779	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000902	exon12	c.G1154A	p.R385Q	.	.	.
PLCH1	23007	broad.mit.edu	36	3	156681716	156681716	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130960	exon23	c.A4817C	p.N1606T	.	.	.
PLCH1	23007	broad.mit.edu	36	3	156715220	156715220	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130960	exon11	c.G1582A	p.A528T	.	.	.
GMPS	8833	broad.mit.edu	36	3	157138152	157138152	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003875	exon16	c.C2059A	p.P687T	.	.	.
SI	6476	broad.mit.edu	36	3	166265874	166265874	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001041	exon7	c.T676C	p.Y226H	.	.	.
SLITRK3	22865	broad.mit.edu	36	3	166388737	166388737	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014926	exon2	c.G2576T	p.G859V	.	.	.
GOLIM4	27333	broad.mit.edu	36	3	169233291	169233291	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014498	exon9	c.C887A	p.P296H	.	.	.
DNAJC19	131118	broad.mit.edu	36	3	182188515	182188515	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145261	exon3	c.T119C	p.L40P	.	.	.
YEATS2	55689	broad.mit.edu	36	3	184986737	184986737	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018023	exon20	c.C2867T	p.A956V	.	.	.
DVL3	1857	broad.mit.edu	36	3	185365410	185365410	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004423	exon5	c.G596A	p.S199N	.	.	.
ETV5	2119	broad.mit.edu	36	3	187249236	187249236	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004454	exon13	c.C1419T	p.C473C	.	.	.
HRG	3273	broad.mit.edu	36	3	187866561	187866561	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000412	exon1	c.C47T	p.S16L	.	.	.
RTP2	344892	broad.mit.edu	36	3	188899352	188899352	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004312	exon2	c.G306A	p.A102A	.	.	.
TP63	8626	broad.mit.edu	36	3	191064887	191064887	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114980	exon3	c.G470A	p.R157H	.	.	.
LEPREL1	55214	broad.mit.edu	36	3	191172417	191172417	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134418	exon12	c.C1230G	p.N410K	.	.	.
CLDN16	10686	broad.mit.edu	36	3	191610485	191610485	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006580	exon5	c.C884T	p.T295M	.	.	.
OSTN	344901	broad.mit.edu	36	3	192450546	192450546	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198184	exon3	c.G344A	p.R115Q	.	.	.
CPN2	1370	broad.mit.edu	36	3	195543948	195543948	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080513	exon2	c.C1179T	p.H393H	.	.	.
MUC4	4585	broad.mit.edu	36	3	197000224	197000224	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018406	exon2	c.C2622A	p.P874P	.	.	.
LRRC33	375387	broad.mit.edu	36	3	197871986	197871986	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198565	exon3	c.C1075A	p.L359I	.	.	.
UBE2E1	7324	broad.mit.edu	36	3	23823833	23823833	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182666	exon2	c.G69T	p.E23D	.	.	.
TOP2B	7155	broad.mit.edu	36	3	25641195	25641195	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001068	exon19	c.G2313A	p.S771S	.	.	.
OXSM	54995	broad.mit.edu	36	3	25808482	25808482	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017897	exon2	c.G967T	p.G323C	.	.	.
TRNT1	51095	broad.mit.edu	36	3	3164646	3164646	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182916	exon8	c.G1113A	p.E371E	.	.	.
CLASP2	23122	broad.mit.edu	36	3	33661267	33661267	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015097	exon8	c.G848A	p.G283D	.	.	.
PDCD6IP	10015	broad.mit.edu	36	3	33882955	33882955	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001162429	exon18	c.G2556A	p.P852P	.	.	.
CTDSPL	10217	broad.mit.edu	36	3	37997275	37997275	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005808	exon7	c.G711A	p.T237T	.	.	.
ACAA1	30	broad.mit.edu	36	3	38148098	38148098	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130410	exon5	c.G439A	p.A147T	.	.	.
MYD88	4615	broad.mit.edu	36	3	38157004	38157004	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172568	exon2	c.C489G	p.D163E	.	.	.
SLC22A13	9390	broad.mit.edu	36	3	38293894	38293894	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004256	exon10	c.G1590T	p.K530N	.	.	.
SLC22A14	9389	broad.mit.edu	36	3	38329513	38329513	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004803	exon5	c.C964T	p.R322W	.	.	.
GORASP1	64689	broad.mit.edu	36	3	39119338	39119338	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031899	exon3	c.C183A	p.A61A	.	.	.
CHL1	10752	broad.mit.edu	36	3	422269	422269	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006614	exon28	c.G3550A	p.G1184R	.	.	.
CCBP2	1238	broad.mit.edu	36	3	42881876	42881876	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001296	exon3	c.C878T	p.A293V	.	.	.
SNRK	54861	broad.mit.edu	36	3	43348701	43348701	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017719	exon4	c.T626C	p.V209A	.	.	.
SNRK	54861	broad.mit.edu	36	3	43364960	43364960	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017719	exon7	c.G2205A	p.L735L	.	.	.
ZNF445	353274	broad.mit.edu	36	3	44465145	44465145	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181489	exon8	c.C1022T	p.P341L	.	.	.
SETD2	29072	broad.mit.edu	36	3	47137769	47137769	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014159	exon3	c.G3361A	p.A1121T	.	.	.
FBXW12	285231	broad.mit.edu	36	3	48411079	48411079	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207102	exon11	c.G1346T	p.R449M	.	.	.
NCKIPSD	51517	broad.mit.edu	36	3	48694958	48694958	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016453	exon3	c.T313C	p.S105P	.	.	.
QRICH1	54870	broad.mit.edu	36	3	49089156	49089156	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198880	exon2	c.A299C	p.Q100P	.	.	.
QARS	5859	broad.mit.edu	36	3	49112274	49112274	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005051	exon15	c.T1312C	p.Y438H	.	.	.
TCTA	6988	broad.mit.edu	36	3	49425018	49425018	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022171	exon1	c.G155A	p.G52D	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52353627	52353627	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015512	exon9	c.C1368T	p.H456H	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52362514	52362514	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015512	exon20	c.G3305A	p.R1102H	.	.	.
ITIH3	3699	broad.mit.edu	36	3	52811839	52811839	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002217	exon13	c.C1686A	p.T562T	.	.	.
PRKCD	5580	broad.mit.edu	36	3	53198135	53198135	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006254	exon17	c.A1576G	p.T526A	.	.	.
ERC2	26059	broad.mit.edu	36	3	55897517	55897517	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015576	exon13	c.C2498T	p.A833V	.	.	.
FAM107A	11170	broad.mit.edu	36	3	58530602	58530602	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001076778	exon2	c.G26A	p.R9Q	.	.	.
MAGI1	9223	broad.mit.edu	36	3	65324273	65324273	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015520	exon22	c.C3486T	p.G1162G	.	.	.
SHQ1	55164	broad.mit.edu	36	3	72949196	72949196	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018130	exon7	c.C757T	p.L253L	.	.	.
CNTN3	5067	broad.mit.edu	36	3	74556744	74556744	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020872	exon4	c.G396A	p.V132V	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78763103	78763103	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002941	exon25	c.C3524T	p.P1175L	.	.	.
GBE1	2632	broad.mit.edu	36	3	81722908	81722908	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000158	exon9	c.G1206A	p.T402T	.	.	.
C3orf38	285237	broad.mit.edu	36	3	88287901	88287901	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173824	exon3	c.G416A	p.R139H	.	.	.
SETD5	55209	broad.mit.edu	36	3	9481330	9481330	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080517	exon18	c.C2698T	p.R900C	.	.	.
C3orf77	375337	broad.mit.edu	36	3	44260015	44260015	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145030	exon2	c.1013delA	p.E338fs	.	.	.
P4HTM	54681	broad.mit.edu	36	3	49018197	49018197	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177938	exon7	c.1240delC	p.P414fs	.	.	.
UTP20	27340	broad.mit.edu	36	12	100287642	100287642	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014503	exon49	c.G6397A	p.A2133T	.	.	.
CHPT1	56994	broad.mit.edu	36	12	100616001	100616001	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020244	exon1	c.C231A	p.T77T	.	.	.
HSP90B1	7184	broad.mit.edu	36	12	102850778	102850778	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003299	exon4	c.T339A	p.D113E	.	.	.
GLT8D2	83468	broad.mit.edu	36	12	102907379	102907379	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031302	exon11	c.C987T	p.D329D	.	.	.
NUAK1	9891	broad.mit.edu	36	12	104985372	104985372	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014840	exon7	c.C1324A	p.L442I	.	.	.
CKAP4	10970	broad.mit.edu	36	12	105158022	105158022	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006825	exon2	c.G719A	p.R240Q	.	.	.
SSH1	54434	broad.mit.edu	36	12	107723069	107723069	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161331	exon9	c.A879G	p.K293K	.	.	.
ACACB	32	broad.mit.edu	36	12	108061904	108061904	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001093	exon1	c.T311G	p.L104R	.	.	.
RPH3A	22895	broad.mit.edu	36	12	111816824	111816824	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014954	exon19	c.A1822C	p.T608P	.	.	.
OAS2	4939	broad.mit.edu	36	12	111930068	111930068	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002535	exon9	c.T1832A	p.V611D	.	.	.
DDX54	79039	broad.mit.edu	36	12	112101474	112101474	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024072	exon4	c.C421T	p.R141W	.	.	.
TBX5	6910	broad.mit.edu	36	12	113278162	113278162	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000192	exon9	c.C1115T	p.S372L	.	.	.
FBXO21	23014	broad.mit.edu	36	12	116099805	116099805	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015002	exon4	c.C495T	p.Y165Y	.	.	.
WSB2	55884	broad.mit.edu	36	12	116965389	116965389	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018639	exon3	c.A359G	p.D120G	.	.	.
CCDC60	160777	broad.mit.edu	36	12	118450850	118450850	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178499	exon12	c.T1277A	p.V426D	.	.	.
CIT	11113	broad.mit.edu	36	12	118635722	118635722	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007174	exon33	c.C4295T	p.S1432F	.	.	.
GCN1L1	10985	broad.mit.edu	36	12	119061019	119061019	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006836	exon46	c.G6019A	p.V2007M	.	.	.
WDR66	144406	broad.mit.edu	36	12	120882944	120882944	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178003	exon14	c.C2204T	p.A735V	.	.	.
IL31	386653	broad.mit.edu	36	12	121224444	121224444	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014336	exon2	c.T65C	p.L22P	.	.	.
TMED2	10959	broad.mit.edu	36	12	122637365	122637365	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006815	exon2	c.C299T	p.T100I	.	.	.
GTF2H3	2967	broad.mit.edu	36	12	122710029	122710029	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001516	exon10	c.C629T	p.T210M	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122855333	122855333	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207437	exon17	c.G2426A	p.G809D	.	.	.
TMEM132B	114795	broad.mit.edu	36	12	124400206	124400206	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052907	exon2	c.T308C	p.L103S	.	.	.
SLC15A4	121260	broad.mit.edu	36	12	127860514	127860514	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145648	exon3	c.A938G	p.E313G	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128124398	128124398	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133448	exon9	c.T3275C	p.M1092T	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128953808	128953808	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133448	exon1	c.G30A	p.W10X	.	.	.
SFSWAP	6433	broad.mit.edu	36	12	130816667	130816667	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004592	exon13	c.C2003T	p.A668V	.	.	.
MMP17	4326	broad.mit.edu	36	12	130892195	130892195	+	Silent	SNP	C	T	T	rs17854024	unknown	TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016155	exon5	c.C780T	p.A260A	.	.	.
POLE	5426	broad.mit.edu	36	12	131730525	131730525	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006231	exon33	c.C4261T	p.P1421S	.	.	.
ANKLE2	23141	broad.mit.edu	36	12	131822159	131822159	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015114	exon9	c.C1606T	p.R536C	.	.	.
ZNF26	7574	broad.mit.edu	36	12	132098115	132098115	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019591	exon4	c.G1577A	p.R526H	.	.	.
PTPRO	5800	broad.mit.edu	36	12	15631207	15631207	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002848	exon23	c.G3281A	p.R1094Q	.	.	.
ADIPOR2	79602	broad.mit.edu	36	12	1760003	1760003	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024551	exon5	c.T589C	p.F197L	.	.	.
SLCO1B1	10599	broad.mit.edu	36	12	21268951	21268951	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006446	exon14	c.G1776A	p.G592G	.	.	.
SLCO1A2	6579	broad.mit.edu	36	12	21336426	21336426	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_134431	exon13	c.T1549C	p.S517P	.	.	.
PYROXD1	79912	broad.mit.edu	36	12	21484613	21484613	+	Silent	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024854	exon2	c.T129G	p.A43A	.	.	.
IFLTD1	160492	broad.mit.edu	36	12	25590590	25590590	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145727	exon2	c.G224A	p.G75D	.	.	.
RASSF8	11228	broad.mit.edu	36	12	26108840	26108840	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007211	exon4	c.G246A	p.P82P	.	.	.
FOXM1	2305	broad.mit.edu	36	12	2848095	2848095	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_202003	exon4	c.C741T	p.F247F	.	.	.
OVCH1	341350	broad.mit.edu	36	12	29521568	29521568	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183378	exon11	c.G1219A	p.V407I	.	.	.
IPO8	10526	broad.mit.edu	36	12	30683776	30683776	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006390	exon21	c.C2429A	p.P810H	.	.	.
IPO8	10526	broad.mit.edu	36	12	30709448	30709448	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006390	exon13	c.G1401A	p.L467L	.	.	.
CAPRIN2	65981	broad.mit.edu	36	12	30754515	30754515	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002259	exon18	c.C2972A	p.P991H	.	.	.
PKP2	5318	broad.mit.edu	36	12	32846642	32846642	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004572	exon11	c.G2261T	p.R754M	.	.	.
PRMT8	56341	broad.mit.edu	36	12	3529487	3529487	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019854	exon3	c.C386A	p.A129D	.	.	.
TWF1	5756	broad.mit.edu	36	12	42479488	42479488	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002822	exon5	c.C565T	p.R189X	.	.	.
ARID2	196528	broad.mit.edu	36	12	44540902	44540902	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152641	exon16	c.A4825G	p.S1609G	.	.	.
SRSF2IP	9169	broad.mit.edu	36	12	44608414	44608414	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004719	exon11	c.G1337A	p.C446Y	.	.	.
VDR	7421	broad.mit.edu	36	12	46525052	46525052	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000376	exon10	c.G1028A	p.R343H	.	.	.
COL2A1	1280	broad.mit.edu	36	12	46666396	46666396	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033150	exon22	c.C1310T	p.P437L	.	.	.
GALNT8	26290	broad.mit.edu	36	12	4706218	4706218	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017417	exon2	c.G471A	p.L157L	.	.	.
MLL2	8085	broad.mit.edu	36	12	47717915	47717915	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003482	exon34	c.G9491A	p.R3164Q	.	.	.
C1QL4	338761	broad.mit.edu	36	12	48016051	48016051	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008223	exon1	c.C477T	p.H159H	.	.	.
BIN2	51411	broad.mit.edu	36	12	49972201	49972201	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016293	exon10	c.A956G	p.E319G	.	.	.
KRT84	3890	broad.mit.edu	36	12	51065238	51065238	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033045	exon1	c.A399G	p.A133A	.	.	.
KRT4	3851	broad.mit.edu	36	12	51487706	51487706	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002272	exon7	c.C1557T	p.G519G	.	.	.
OR6C75	390323	broad.mit.edu	36	12	54045553	54045553	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005497	exon1	c.C392T	p.T131I	.	.	.
ITGA7	3679	broad.mit.edu	36	12	54368945	54368945	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144997	exon22	c.G2629A	p.A877T	.	.	.
MYL6B	140465	broad.mit.edu	36	12	54835520	54835520	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199629	exon5	c.G397A	p.A133T	.	.	.
ANKRD52	283373	broad.mit.edu	36	12	54932269	54932269	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173595	exon14	c.T1468C	p.C490R	.	.	.
GLS2	27165	broad.mit.edu	36	12	55153317	55153317	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013267	exon14	c.C1411T	p.R471W	.	.	.
BAZ2A	11176	broad.mit.edu	36	12	55279367	55279367	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013449	exon27	c.C5221T	p.R1741C	.	.	.
BAZ2A	11176	broad.mit.edu	36	12	55283663	55283663	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013449	exon17	c.C3133T	p.R1045W	.	.	.
PTGES3	10728	broad.mit.edu	36	12	55353004	55353004	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006601	exon2	c.A115G	p.S39G	.	.	.
LRP1	4035	broad.mit.edu	36	12	55878332	55878332	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002332	exon59	c.A9409G	p.T3137A	.	.	.
ANO2	57101	broad.mit.edu	36	12	5594723	5594723	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020373	exon18	c.G1818A	p.E606E	.	.	.
INHBE	83729	broad.mit.edu	36	12	56136490	56136490	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031479	exon2	c.G645A	p.Q215Q	INHBE,breast,NS,Substitution - Missense,0	.	.
ARHGAP9	64333	broad.mit.edu	36	12	56155418	56155418	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080156	exon10	c.G923A	p.R308H	.	.	.
CDK4	1019	broad.mit.edu	36	12	56428614	56428614	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000075	exon8	c.G873A	p.Q291Q	.	.	.
AVIL	10677	broad.mit.edu	36	12	56486513	56486513	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006576	exon13	c.C1568T	p.S523F	.	.	.
C12orf66	144577	broad.mit.edu	36	12	62874574	62874574	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152440	exon3	c.G653A	p.S218N	.	.	.
TNFRSF1A	7132	broad.mit.edu	36	12	6312516	6312516	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001065	exon5	c.C531T	p.N177N	.	.	.
WIF1	11197	broad.mit.edu	36	12	63800497	63800497	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007191	exon2	c.T255C	p.H85H	.	.	.
CD27	939	broad.mit.edu	36	12	6430028	6430028	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001242	exon4	c.C509A	p.P170H	.	.	.
GNB3	2784	broad.mit.edu	36	12	6822439	6822439	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002075	exon5	c.G141A	p.T47T	.	.	.
FRS2	10818	broad.mit.edu	36	12	68254388	68254388	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042555	exon10	c.G913A	p.V305M	.	.	.
CLSTN3	9746	broad.mit.edu	36	12	7186745	7186745	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014718	exon11	c.G1554A	p.S518S	.	.	.
CEP290	80184	broad.mit.edu	36	12	87006986	87006986	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025114	exon31	c.T3983C	p.L1328P	.	.	.
ATP2B1	490	broad.mit.edu	36	12	88509033	88509033	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001682	exon20	c.A3522G	p.K1174K	.	.	.
PHC1	1911	broad.mit.edu	36	12	8961555	8961555	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004426	exon2	c.C15T	p.S5S	.	.	.
HAL	3034	broad.mit.edu	36	12	94908312	94908312	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002108	exon10	c.A845G	p.D282G	.	.	.
CDK17	5128	broad.mit.edu	36	12	95207141	95207141	+	Silent	SNP	T	C	C	rs45574339	unknown	TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002595	exon11	c.A1053G	p.T351T	.	.	.
USP15	9958	broad.mit.edu	36	12	61081265	61081265	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006313	exon20	c.2619delA	p.G873fs	.	.	.
CYFIP1	23191	broad.mit.edu	36	15	20554449	20554449	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014608	exon31	c.C3730T	p.P1244S	.	.	.
NIPA2	81614	broad.mit.edu	36	15	20557747	20557747	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008860	exon7	c.A998C	p.N333T	.	.	.
SNRPN	6638	broad.mit.edu	36	15	22758373	22758373	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005678	exon2	c.C34T	p.R12X	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23477056	23477056	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024490	exon19	c.A3672C	p.K1224N	.	.	.
RYR3	6263	broad.mit.edu	36	15	31552939	31552939	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036	exon2	c.G79A	p.A27T	.	.	.
RYR3	6263	broad.mit.edu	36	15	31827722	31827722	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036	exon54	c.A8105G	p.E2702G	.	.	.
RYR3	6263	broad.mit.edu	36	15	31906195	31906195	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001036	exon84	c.C11195T	p.T3732M	.	.	.
ZNF770	54989	broad.mit.edu	36	15	33061400	33061400	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014106	exon3	c.A1528G	p.K510E	.	.	.
MEIS2	4212	broad.mit.edu	36	15	35177550	35177550	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170676	exon2	c.G155A	p.G52D	.	.	.
THBS1	7057	broad.mit.edu	36	15	37661701	37661701	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003246	exon3	c.A83G	p.N28S	.	.	.
GPR176	11245	broad.mit.edu	36	15	37880928	37880928	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007223	exon3	c.G1245A	p.G415G	.	.	.
INO80	54617	broad.mit.edu	36	15	39124500	39124500	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017553	exon24	c.C2801T	p.A934V	.	.	.
EPB42	2038	broad.mit.edu	36	15	41288236	41288236	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114134	exon7	c.G862A	p.V288M	.	.	.
ZSCAN29	146050	broad.mit.edu	36	15	41440601	41440601	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152455	exon5	c.G2521A	p.A841T	.	.	.
ZSCAN29	146050	broad.mit.edu	36	15	41448553	41448553	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152455	exon2	c.A383T	p.Q128L	.	.	.
ZSCAN29	146050	broad.mit.edu	36	15	41449258	41449258	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152455	exon1	c.C146T	p.P49L	.	.	.
GATM	2628	broad.mit.edu	36	15	43441664	43441664	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001482	exon9	c.G1207A	p.G403R	.	.	.
SPATA5L1	79029	broad.mit.edu	36	15	43494146	43494146	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024063	exon4	c.C1520T	p.P507L	.	.	.
FBN1	2200	broad.mit.edu	36	15	46561255	46561255	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000138	exon32	c.G3853A	p.D1285N	.	.	.
SHC4	399694	broad.mit.edu	36	15	47042257	47042257	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203349	exon1	c.T248C	p.L83P	.	.	.
USP8	9101	broad.mit.edu	36	15	48569854	48569854	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128611	exon15	c.A2074G	p.T692A	.	.	.
SPPL2A	84888	broad.mit.edu	36	15	48799586	48799586	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032802	exon14	c.A1331G	p.Y444C	.	.	.
CYP19A1	1588	broad.mit.edu	36	15	49322320	49322320	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031226	exon3	c.G82A	p.V28I	.	.	.
MYO5C	55930	broad.mit.edu	36	15	50319329	50319329	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018728	exon21	c.G2596A	p.A866T	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52401482	52401482	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080534	exon12	c.T4322C	p.M1441T	.	.	.
RNF111	54778	broad.mit.edu	36	15	57174290	57174290	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017610	exon14	c.C2860T	p.H954Y	.	.	.
TPM1	7168	broad.mit.edu	36	15	61149151	61149151	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018008	exon8	c.C694T	p.R232C	.	.	.
HERC1	8925	broad.mit.edu	36	15	61814044	61814044	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003922	exon13	c.C2578T	p.R860W	.	.	.
PLEKHO2	80301	broad.mit.edu	36	15	62944801	62944801	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001195059	exon5	c.G984T	p.W328C	.	.	.
SMAD3	4088	broad.mit.edu	36	15	65269827	65269827	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145103	exon9	c.C1045A	p.P349T	SMAD3,large_intestine,colon,Substitution - Missense,-1	.	.
CORO2B	10391	broad.mit.edu	36	15	66790231	66790231	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006091	exon4	c.C440T	p.P147L	.	.	.
KIF23	9493	broad.mit.edu	36	15	67501825	67501825	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004856	exon6	c.G560A	p.S187N	.	.	.
TMEM202	338949	broad.mit.edu	36	15	70486584	70486584	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080462	exon4	c.G591A	p.W197X	.	.	.
NEO1	4756	broad.mit.edu	36	15	71196169	71196169	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172623	exon2	c.T366C	p.P122P	.	.	.
C15orf60	283677	broad.mit.edu	36	15	71522665	71522665	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042367	exon1	c.G86A	p.C29Y	.	.	.
SCAPER	49855	broad.mit.edu	36	15	74854268	74854268	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145923	exon9	c.C280A	p.L94I	.	.	.
LINGO1	84894	broad.mit.edu	36	15	75693594	75693594	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032808	exon2	c.C1710T	p.G570G	.	.	.
IREB2	3658	broad.mit.edu	36	15	76567682	76567682	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004136	exon15	c.G1900A	p.A634T	.	.	.
KIAA1024	23251	broad.mit.edu	36	15	77535631	77535631	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015206	exon2	c.C87T	p.D29D	.	.	.
FAM108C1	58489	broad.mit.edu	36	15	78829036	78829036	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021214	exon2	c.C718T	p.R240C	.	.	.
C15orf26	161502	broad.mit.edu	36	15	79214670	79214670	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173528	exon2	c.T74G	p.L25R	.	.	.
IL16	3603	broad.mit.edu	36	15	79380878	79380878	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172128	exon15	c.G3288A	p.E1096E	.	.	.
C15orf40	123207	broad.mit.edu	36	15	81468357	81468357	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160113	exon3	c.C313T	p.R105W	.	.	.
AGBL1	123624	broad.mit.edu	36	15	84741752	84741752	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152336	exon17	c.G2388A	p.M796I	.	.	.
ACAN	176	broad.mit.edu	36	15	87202537	87202537	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135	exon12	c.G5717A	p.G1906E	.	.	.
HAPLN3	145864	broad.mit.edu	36	15	87225842	87225842	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178232	exon3	c.G243A	p.P81P	.	.	.
C15orf42	90381	broad.mit.edu	36	15	87928644	87928644	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152259	exon3	c.C1058T	p.T353M	.	.	.
SEMA4B	10509	broad.mit.edu	36	15	88572581	88572581	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198925	exon14	c.G2216T	p.R739L	.	.	.
FURIN	5045	broad.mit.edu	36	15	89220726	89220726	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002569	exon4	c.C307T	p.R103X	.	.	.
MEF2A	4205	broad.mit.edu	36	15	98029091	98029091	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171894	exon6	c.A299G	p.D100G	.	.	.
LASS3	204219	broad.mit.edu	36	15	98813743	98813743	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178842	exon12	c.T877C	p.Y293H	.	.	.
LRRK1	79705	broad.mit.edu	36	15	99346452	99346452	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024652	exon5	c.C524T	p.T175M	.	.	.
KLHL25	64410	broad.mit.edu	36	15	84113612	84113612	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022480	exon2	c.434delT	p.F145fs	.	.	.
AGXT2L1	64850	broad.mit.edu	36	4	109883131	109883131	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146627	exon12	c.C1284T	p.C428C	.	.	.
AGXT2L1	64850	broad.mit.edu	36	4	109888615	109888615	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146627	exon8	c.T903A	p.D301E	.	.	.
COL25A1	84570	broad.mit.edu	36	4	110442426	110442426	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198721	exon2	c.G199A	p.E67K	.	.	.
PRSS12	8492	broad.mit.edu	36	4	119472337	119472337	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003619	exon4	c.G953A	p.C318Y	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120198158	120198158	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133477	exon5	c.C3407T	p.A1136V	.	.	.
PRDM5	11107	broad.mit.edu	36	4	121895238	121895238	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018699	exon14	c.C1543T	p.R515C	.	.	.
BBS7	55212	broad.mit.edu	36	4	122969225	122969225	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176824	exon16	c.C1785T	p.Y595Y	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123347769	123347769	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015312	exon14	c.C1553T	p.P518L	.	.	.
ANKRD50	57182	broad.mit.edu	36	4	125812873	125812873	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167882	exon3	c.C472T	p.L158L	.	.	.
FAT4	79633	broad.mit.edu	36	4	126547593	126547593	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024582	exon3	c.C5416T	p.R1806C	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134291977	134291977	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032961	exon1	c.A1232G	p.N411S	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134292387	134292387	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032961	exon1	c.G1642A	p.A548T	.	.	.
CLGN	1047	broad.mit.edu	36	4	141536757	141536757	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004362	exon9	c.G937T	p.G313C	.	.	.
TBC1D9	23158	broad.mit.edu	36	4	141810302	141810302	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015130	exon8	c.C1373T	p.T458I	.	.	.
USP38	84640	broad.mit.edu	36	4	144353026	144353026	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032557	exon8	c.A1603G	p.R535G	.	.	.
USP38	84640	broad.mit.edu	36	4	144355434	144355434	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032557	exon9	c.C2855T	p.T952I	.	.	.
KIAA0922	23240	broad.mit.edu	36	4	154777071	154777071	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015196	exon35	c.T4723C	p.F1575L	.	.	.
TLR2	7097	broad.mit.edu	36	4	154845248	154845248	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003264	exon3	c.T1739C	p.L580P	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155475603	155475603	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142552	exon4	c.C2580T	p.A860A	.	.	.
NPY2R	4887	broad.mit.edu	36	4	156355499	156355499	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000910	exon2	c.G958A	p.A320T	.	.	.
GUCY1B3	2983	broad.mit.edu	36	4	156930347	156930347	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000857	exon5	c.C329T	p.T110I	.	.	.
PDGFC	56034	broad.mit.edu	36	4	157951459	157951459	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016205	exon3	c.C475A	p.H159N	.	.	.
FAT1	2195	broad.mit.edu	36	4	187777135	187777135	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005245	exon10	c.T7599C	p.N2533N	.	.	.
FAT1	2195	broad.mit.edu	36	4	187865609	187865609	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005245	exon2	c.C2367A	p.T789T	.	.	.
ZFP42	132625	broad.mit.edu	36	4	189161755	189161755	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174900	exon4	c.G800A	p.R267H	.	.	.
PPARGC1A	10891	broad.mit.edu	36	4	23439133	23439133	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013261	exon5	c.C745T	p.Q249X	.	.	.
SLC34A2	10568	broad.mit.edu	36	4	25287439	25287439	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177999	exon13	c.G2040A	p.S680S	.	.	.
ZNF721	170960	broad.mit.edu	36	4	426934	426934	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133474	exon3	c.G1322T	p.G441V	.	.	.
GUF1	60558	broad.mit.edu	36	4	44392427	44392427	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021927	exon15	c.G1754A	p.R585Q	.	.	.
GNPDA2	132789	broad.mit.edu	36	4	44407739	44407739	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138335	exon5	c.G582T	p.M194I	.	.	.
CORIN	10699	broad.mit.edu	36	4	47376997	47376997	+	Silent	SNP	G	A	A	rs13306285	unknown	TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006587	exon8	c.C1050T	p.C350C	.	.	.
CWH43	80157	broad.mit.edu	36	4	48729407	48729407	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025087	exon12	c.G1576A	p.E526K	.	.	.
PIGG	54872	broad.mit.edu	36	4	517699	517699	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017733	exon12	c.G2640A	p.A880A	.	.	.
STK32B	55351	broad.mit.edu	36	4	5383929	5383929	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018401	exon4	c.G342A	p.Q114Q	.	.	.
SCFD2	152579	broad.mit.edu	36	4	53913538	53913538	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152540	exon2	c.T991C	p.C331R	.	.	.
LNX1	84708	broad.mit.edu	36	4	54039534	54039534	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126328	exon8	c.G1618A	p.V540I	.	.	.
EVC2	132884	broad.mit.edu	36	4	5637380	5637380	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166136	exon17	c.C2688A	p.S896S	.	.	.
EPHA5	2044	broad.mit.edu	36	4	65899723	65899723	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004439	exon14	c.C2487A	p.P829P	.	.	.
KIAA0232	9778	broad.mit.edu	36	4	6916392	6916392	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014743	exon7	c.T3382C	p.S1128P	.	.	.
TADA2B	93624	broad.mit.edu	36	4	7106837	7106837	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152293	exon2	c.G418A	p.G140R	.	.	.
ENAM	10117	broad.mit.edu	36	4	71728483	71728483	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031889	exon9	c.G2476T	p.G826C	.	.	.
USO1	8615	broad.mit.edu	36	4	76945354	76945354	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003715	exon17	c.G2012T	p.G671V	.	.	.
AFAP1	60312	broad.mit.edu	36	4	7846422	7846422	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134647	exon11	c.T1298C	p.I433T	.	.	.
BMP2K	55589	broad.mit.edu	36	4	80051051	80051051	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198892	exon16	c.G2326A	p.D776N	.	.	.
SCD5	79966	broad.mit.edu	36	4	83776828	83776828	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037582	exon4	c.C742T	p.R248W	.	.	.
SEC31A	22872	broad.mit.edu	36	4	83997129	83997129	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077206	exon16	c.G1881A	p.R627R	.	.	.
ACOX3	8310	broad.mit.edu	36	4	8462945	8462945	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003501	exon6	c.A581G	p.K194R	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85927701	85927701	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014991	exon23	c.G3859T	p.G1287X	.	.	.
FAM13A	10144	broad.mit.edu	36	4	89890781	89890781	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014883	exon15	c.G1757A	p.R586Q	.	.	.
GPRIN3	285513	broad.mit.edu	36	4	90388000	90388000	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198281	exon2	c.G2285A	p.R762H	.	.	.
DRD5	1816	broad.mit.edu	36	4	9393134	9393134	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000798	exon1	c.T383C	p.I128T	.	.	.
TMEM35	59353	broad.mit.edu	36	X	100220656	100220656	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021637	exon1	c.C9A	p.S3S	.	.	.
TMEM35	59353	broad.mit.edu	36	X	100220722	100220722	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021637	exon1	c.T75C	p.T25T	.	.	.
ARMCX1	51309	broad.mit.edu	36	X	100695625	100695625	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016608	exon4	c.A1056G	p.I352M	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107720967	107720967	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000495	exon20	c.G1189T	p.G397C	.	.	.
RHOXF2B	727940	broad.mit.edu	36	X	119095142	119095142	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032498	exon2	c.C219T	p.G73G	.	.	.
FAM70A	55026	broad.mit.edu	36	X	119329160	119329160	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001104545	exon1	c.C33T	p.S11S	.	.	.
TLR8	51311	broad.mit.edu	36	X	12847104	12847104	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138636	exon2	c.G24A	p.S8S	.	.	.
UTP14A	10813	broad.mit.edu	36	X	128869083	128869083	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006649	exon2	c.G86C	p.S29T	.	.	.
ELF4	2000	broad.mit.edu	36	X	129032699	129032699	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001421	exon7	c.T806C	p.L269P	.	.	.
RBMX2	51634	broad.mit.edu	36	X	129374165	129374165	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016024	exon6	c.G631A	p.E211K	.	.	.
GPC3	2719	broad.mit.edu	36	X	132715766	132715766	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164618	exon3	c.A393T	p.E131D	.	.	.
ZNF75D	7626	broad.mit.edu	36	X	134249095	134249095	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007131	exon6	c.A1173G	p.K391K	.	.	.
SAGE1	55511	broad.mit.edu	36	X	134817995	134817995	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018666	exon11	c.C1241T	p.T414I	.	.	.
MAP7D3	79649	broad.mit.edu	36	X	135150989	135150989	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001173517	exon5	c.A531C	p.K177N	.	.	.
GPR112	139378	broad.mit.edu	36	X	135257727	135257727	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153834	exon6	c.A4196G	p.N1399S	.	.	.
SOX3	6658	broad.mit.edu	36	X	139414429	139414429	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005634	exon1	c.C463T	p.R155C	.	.	.
GPR50	9248	broad.mit.edu	36	X	150099737	150099737	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004224	exon2	c.G1024A	p.A342T	.	.	.
VMA21	203547	broad.mit.edu	36	X	150324126	150324126	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017980	exon3	c.C244A	p.L82I	.	.	.
GABRE	2564	broad.mit.edu	36	X	150874154	150874154	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004961	exon9	c.G1196A	p.R399H	.	.	.
ZNF185	7739	broad.mit.edu	36	X	151837269	151837269	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007150	exon6	c.G346A	p.A116T	.	.	.
ZNF275	10838	broad.mit.edu	36	X	152265993	152265993	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080485	exon4	c.A656G	p.K219R	.	.	.
AVPR2	554	broad.mit.edu	36	X	152824226	152824226	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000054	exon2	c.C72A	p.S24R	.	.	.
F8	2157	broad.mit.edu	36	X	153904002	153904002	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000132	exon1	c.C20T	p.T7I	.	.	.
CTPS2	56474	broad.mit.edu	36	X	16567241	16567241	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144002	exon14	c.T1343C	p.M448T	.	.	.
BEND2	139105	broad.mit.edu	36	X	18148781	18148781	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153346	exon1	c.G11T	p.R4M	.	.	.
PHKA2	5256	broad.mit.edu	36	X	18834779	18834779	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000292	exon24	c.C2672T	p.T891M	.	.	.
GPR64	10149	broad.mit.edu	36	X	18951953	18951953	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184837	exon10	c.A415C	p.S139R	.	.	.
GYG2	8908	broad.mit.edu	36	X	2787918	2787918	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184703	exon8	c.G742A	p.G248R	.	.	.
FAM47B	170062	broad.mit.edu	36	X	34871217	34871217	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152631	exon1	c.G348A	p.A116A	.	.	.
SYTL5	94122	broad.mit.edu	36	X	37850813	37850813	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138780	exon11	c.C1179T	p.S393S	.	.	.
SYTL5	94122	broad.mit.edu	36	X	37866283	37866283	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138780	exon15	c.A1712G	p.K571R	.	.	.
BCOR	54880	broad.mit.edu	36	X	39817698	39817698	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001123383	exon4	c.G1845A	p.K615K	.	.	.
USP9X	8239	broad.mit.edu	36	X	40873331	40873331	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039590	exon3	c.C231T	p.D77D	.	.	.
GPR34	2857	broad.mit.edu	36	X	41440032	41440032	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005300	exon3	c.G202T	p.G68X	.	.	.
USP11	8237	broad.mit.edu	36	X	46986461	46986461	+	Missense_Mutation	SNP	C	T	T	rs6609463	by-hapmap	TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004651	exon10	c.C1345T	p.R449W	.	.	.
CCDC120	90060	broad.mit.edu	36	X	48811897	48811897	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163323	exon10	c.C1162T	p.R388C	.	.	.
CACNA1F	778	broad.mit.edu	36	X	48969465	48969465	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005183	exon13	c.C1534T	p.R512C	.	.	.
PPP1R3F	89801	broad.mit.edu	36	X	49029335	49029335	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033215	exon4	c.G1239A	p.P413P	.	.	.
KDM5C	8242	broad.mit.edu	36	X	53240327	53240327	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004187	exon23	c.C3757A	p.P1253T	.	.	.
WNK3	65267	broad.mit.edu	36	X	54281628	54281628	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002838	exon19	c.G3745T	p.E1249X	.	.	.
PFKFB1	5207	broad.mit.edu	36	X	54988603	54988603	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002625	exon10	c.G1092T	p.K364N	.	.	.
RRAGB	10325	broad.mit.edu	36	X	55774618	55774618	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016656	exon6	c.C474T	p.R158R	.	.	.
KLF8	11279	broad.mit.edu	36	X	56327606	56327606	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007250	exon6	c.G1034A	p.R345H	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	5821121	5821121	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020742	exon6	c.A2188G	p.M730V	.	.	.
MTMR8	55613	broad.mit.edu	36	X	63405516	63405516	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017677	exon14	c.A1741G	p.T581A	.	.	.
PJA1	64219	broad.mit.edu	36	X	68298835	68298835	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001032396	exon2	c.C807T	p.D269D	.	.	.
FOXO4	4303	broad.mit.edu	36	X	70233375	70233375	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005938	exon1	c.C272A	p.P91H	.	.	.
ZMYM3	9203	broad.mit.edu	36	X	70384756	70384756	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171162	exon11	c.G1956T	p.E652D	.	.	.
ITGB1BP2	26548	broad.mit.edu	36	X	70439074	70439074	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012278	exon4	c.A260T	p.Q87L	.	.	.
ERCC6L	54821	broad.mit.edu	36	X	71342330	71342330	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017669	exon2	c.T3012C	p.S1004S	.	.	.
RPS4X	6191	broad.mit.edu	36	X	71412220	71412220	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007	exon3	c.A161G	p.Y54C	.	.	.
DMRTC1	63947	broad.mit.edu	36	X	72009114	72009114	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080851	exon6	c.G476T	p.G159V	.	.	.
KIAA2022	340533	broad.mit.edu	36	X	73877166	73877166	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008537	exon3	c.C3951T	p.S1317S	.	.	.
ATRX	546	broad.mit.edu	36	X	76762523	76762523	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000489	exon20	c.T5268C	p.I1756I	.	.	.
KLHL4	56062	broad.mit.edu	36	X	86759767	86759767	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_057162	exon4	c.G904A	p.V302M	.	.	.
PABPC5	140886	broad.mit.edu	36	X	90578228	90578228	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080832	exon2	c.A996C	p.K332N	.	.	.
SHROOM2	357	broad.mit.edu	36	X	9860449	9860449	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001649	exon6	c.T3126C	p.H1042H	.	.	.
SHROOM2	357	broad.mit.edu	36	X	9867300	9867300	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001649	exon8	c.C4205T	p.S1402L	.	.	.
SHROOM2	357	broad.mit.edu	36	X	9874830	9874830	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001649	exon10	c.C4704T	p.S1568S	.	.	.
TNMD	64102	broad.mit.edu	36	X	99741223	99741223	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022144	exon7	c.C807T	p.C269C	.	.	.
SYTL4	94121	broad.mit.edu	36	X	99830091	99830091	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001129896	exon11	c.G918A	p.E306E	.	.	.
TFE3	7030	broad.mit.edu	36	X	48783604	48783604	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006521	exon3	c.506delC	p.P169fs	.	.	.
UXS1	80146	broad.mit.edu	36	2	106095604	106095604	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025076	exon10	c.G794A	p.R265H	.	.	.
UXS1	80146	broad.mit.edu	36	2	106108543	106108543	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025076	exon8	c.G587A	p.R196H	.	.	.
SH3RF3	344558	broad.mit.edu	36	2	109616367	109616367	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099289	exon9	c.G2156A	p.R719H	.	.	.
ZC3H8	84524	broad.mit.edu	36	2	112708279	112708279	+	Silent	SNP	A	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032494	exon5	c.T510G	p.G170G	.	.	.
CCDC93	54520	broad.mit.edu	36	2	118422211	118422211	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019044	exon15	c.A1164G	p.A388A	.	.	.
C1QL2	165257	broad.mit.edu	36	2	119631674	119631674	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182528	exon1	c.C642T	p.G214G	.	.	.
C1QL2	165257	broad.mit.edu	36	2	119632217	119632217	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182528	exon1	c.C99T	p.C33C	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	124499724	124499724	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130773	exon1	c.C27T	p.S9S	.	.	.
CCDC74A	90557	broad.mit.edu	36	2	132005726	132005726	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138770	exon4	c.C564T	p.P188P	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133777115	133777115	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207481	exon4	c.T107C	p.L36P	.	.	.
RAB3GAP1	22930	broad.mit.edu	36	2	135607931	135607931	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012233	exon15	c.T1357C	p.S453P	.	.	.
RAB3GAP1	22930	broad.mit.edu	36	2	135638653	135638653	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012233	exon23	c.G2626A	p.E876K	.	.	.
ZRANB3	84083	broad.mit.edu	36	2	135978388	135978388	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032143	exon2	c.G142A	p.A48T	.	.	.
LCT	3938	broad.mit.edu	36	2	136281355	136281355	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002299	exon9	c.C3986T	p.T1329M	.	.	.
HNMT	3176	broad.mit.edu	36	2	138455321	138455321	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024075	exon3	c.C256T	p.R86C	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144873423	144873423	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171653	exon7	c.C1729T	p.R577C	.	.	.
ACVR2A	92	broad.mit.edu	36	2	148401216	148401216	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001616	exon11	c.T1445C	p.M482T	.	.	.
MBD5	55777	broad.mit.edu	36	2	148942981	148942981	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018328	exon9	c.C999T	p.P333P	.	.	.
NEB	4703	broad.mit.edu	36	2	152290282	152290282	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164507	exon6	c.G333T	p.Q111H	.	.	.
NEB	4703	broad.mit.edu	36	2	152292583	152292583	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164507	exon5	c.G162A	p.Q54Q	.	.	.
GPD2	2820	broad.mit.edu	36	2	157115420	157115420	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001083112	exon8	c.C887A	p.S296Y	.	.	.
BAZ2B	29994	broad.mit.edu	36	2	160003105	160003105	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013450	exon8	c.C1248A	p.T416T	.	.	.
TANK	10010	broad.mit.edu	36	2	161744456	161744456	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199135	exon2	c.T37C	p.Y13H	.	.	.
GCG	2641	broad.mit.edu	36	2	162712196	162712196	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002054	exon3	c.G167A	p.G56D	.	.	.
GRB14	2888	broad.mit.edu	36	2	165073228	165073228	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004490	exon8	c.G1006A	p.A336T	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166837218	166837218	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002977	exon17	c.C3255T	p.S1085S	.	.	.
METTL5	29081	broad.mit.edu	36	2	170389270	170389270	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014168	exon1	c.G84T	p.Q28H	.	.	.
METTL8	79828	broad.mit.edu	36	2	171904277	171904277	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024770	exon4	c.A269G	p.D90G	.	.	.
CYBRD1	79901	broad.mit.edu	36	2	172118229	172118229	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024843	exon3	c.G530A	p.G177E	.	.	.
DYNC1I2	1781	broad.mit.edu	36	2	172290469	172290469	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001378	exon8	c.G607T	p.A203S	.	.	.
DYNC1I2	1781	broad.mit.edu	36	2	172292667	172292667	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001378	exon12	c.C1087T	p.R363C	.	.	.
ZAK	51776	broad.mit.edu	36	2	173834091	173834091	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016653	exon18	c.G1531T	p.E511X	.	.	.
AGPS	8540	broad.mit.edu	36	2	178066147	178066147	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003659	exon12	c.T1259G	p.L420R	.	.	.
PDE11A	50940	broad.mit.edu	36	2	178644807	178644807	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016953	exon1	c.C604T	p.R202C	.	.	.
TTN	7273	broad.mit.edu	36	2	179104738	179104738	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon186	c.G77654A	p.R25885H	.	.	.
TTN	7273	broad.mit.edu	36	2	179120565	179120565	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon167	c.T66838C	p.X22280Q	.	.	.
TTN	7273	broad.mit.edu	36	2	179126984	179126984	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon161	c.A61904G	p.K20635R	.	.	.
TTN	7273	broad.mit.edu	36	2	179134234	179134234	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.C57675T	p.N19225N	.	.	.
TTN	7273	broad.mit.edu	36	2	179182324	179182324	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon101	c.C24763G	p.Q8255E	.	.	.
TTN	7273	broad.mit.edu	36	2	179277874	179277874	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133378	exon101	c.T25937C	p.I8646T	.	.	.
DNAJC10	54431	broad.mit.edu	36	2	183325085	183325085	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018981	exon16	c.A1476G	p.R492R	.	.	.
NUP35	129401	broad.mit.edu	36	2	183703464	183703464	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138285	exon3	c.T285C	p.Y95Y	.	.	.
SGOL2	151246	broad.mit.edu	36	2	201146259	201146259	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160046	exon7	c.T2945A	p.V982E	.	.	.
CASP8	841	broad.mit.edu	36	2	201839639	201839639	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033356	exon2	c.T185C	p.L62P	.	.	.
INO80D	54891	broad.mit.edu	36	2	206601180	206601180	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017759	exon6	c.C1198T	p.H400Y	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206881067	206881067	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020923	exon5	c.G3570A	p.K1190K	.	.	.
KLF7	8609	broad.mit.edu	36	2	207696817	207696817	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003709	exon2	c.G659A	p.R220H	.	.	.
APOB	338	broad.mit.edu	36	2	21088179	21088179	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000384	exon26	c.G5066A	p.R1689H	.	.	.
IKZF2	22807	broad.mit.edu	36	2	213581006	213581006	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016260	exon8	c.A904G	p.N302D	.	.	.
PNKD	25953	broad.mit.edu	36	2	218844511	218844511	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077399	exon2	c.G231A	p.L77L	.	.	.
GLB1L	79411	broad.mit.edu	36	2	219816176	219816176	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024506	exon3	c.G177A	p.P59P	.	.	.
ACCN4	55515	broad.mit.edu	36	2	220104834	220104834	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018674	exon2	c.G1074A	p.Q358Q	.	.	.
CHPF	79586	broad.mit.edu	36	2	220113433	220113433	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024536	exon4	c.G1244A	p.R415H	.	.	.
PAX3	5077	broad.mit.edu	36	2	222868500	222868500	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000438	exon3	c.G442A	p.V148M	.	.	.
COL4A3	1285	broad.mit.edu	36	2	227824305	227824305	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000091	exon11	c.G619T	p.G207X	.	.	.
SP110	3431	broad.mit.edu	36	2	230743636	230743636	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080424	exon18	c.C1973T	p.A658V	.	.	.
NMUR1	10316	broad.mit.edu	36	2	232101918	232101918	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006056	exon2	c.G58A	p.A20T	.	.	.
C2orf44	80304	broad.mit.edu	36	2	24114855	24114855	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025203	exon2	c.C1014T	p.G338G	.	.	.
MTERFD2	130916	broad.mit.edu	36	2	241685472	241685472	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182501	exon3	c.C564T	p.T188T	.	.	.
STK25	10494	broad.mit.edu	36	2	242087359	242087359	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006374	exon6	c.G571A	p.A191T	.	.	.
ASXL2	55252	broad.mit.edu	36	2	25875820	25875820	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018263	exon4	c.G341A	p.S114N	.	.	.
IFT172	26160	broad.mit.edu	36	2	27526416	27526416	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015662	exon36	c.G4003A	p.V1335I	.	.	.
IFT172	26160	broad.mit.edu	36	2	27537646	27537646	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015662	exon22	c.C2436T	p.Y812Y	.	.	.
ALK	238	broad.mit.edu	36	2	29305375	29305375	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004304	exon16	c.G2694T	p.E898D	.	.	.
SRD5A2	6716	broad.mit.edu	36	2	31612315	31612315	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000348	exon2	c.C306T	p.I102I	.	.	.
NLRC4	58484	broad.mit.edu	36	2	32329588	32329588	+	Silent	SNP	G	A	A	rs35155278	unknown	TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021209	exon4	c.C849T	p.C283C	.	.	.
NLRC4	58484	broad.mit.edu	36	2	32331128	32331128	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021209	exon3	c.C126T	p.C42C	.	.	.
HEATR5B	54497	broad.mit.edu	36	2	37149482	37149482	+	Silent	SNP	A	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019024	exon8	c.T1023A	p.P341P	.	.	.
PRKD3	23683	broad.mit.edu	36	2	37334855	37334855	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005813	exon17	c.T2495C	p.L832P	.	.	.
SLC8A1	6546	broad.mit.edu	36	2	40195991	40195991	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001112800	exon9	c.C2813T	p.A938V	.	.	.
SLC3A1	6519	broad.mit.edu	36	2	44362066	44362066	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000341	exon3	c.C647T	p.T216M	.	.	.
EPAS1	2034	broad.mit.edu	36	2	46461048	46461048	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001430	exon12	c.C1733T	p.A578V	.	.	.
MSH6	2956	broad.mit.edu	36	2	47887284	47887284	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000179	exon9	c.C3991T	p.R1331X	.	.	.
FSHR	2492	broad.mit.edu	36	2	49049384	49049384	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181446	exon8	c.T733C	p.Y245H	.	.	.
PNPT1	87178	broad.mit.edu	36	2	55760344	55760344	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033109	exon8	c.C656G	p.A219G	.	.	.
XPO1	7514	broad.mit.edu	36	2	61569390	61569390	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003400	exon18	c.T2043C	p.D681D	.	.	.
FAM161A	84140	broad.mit.edu	36	2	61922761	61922761	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032180	exon2	c.G422T	p.R141I	.	.	.
VPS54	51542	broad.mit.edu	36	2	64064560	64064560	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016516	exon2	c.G78A	p.P26P	.	.	.
SERTAD2	9792	broad.mit.edu	36	2	64716898	64716898	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014755	exon2	c.C612T	p.G204G	.	.	.
PROKR1	10887	broad.mit.edu	36	2	68735950	68735950	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138964	exon2	c.G920A	p.R307H	.	.	.
GMCL1	64395	broad.mit.edu	36	2	69923802	69923802	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178439	exon5	c.G597A	p.Q199Q	.	.	.
ADD2	119	broad.mit.edu	36	2	70764403	70764403	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001185054	exon10	c.C953T	p.S318L	.	.	.
ZNF638	27332	broad.mit.edu	36	2	71430351	71430351	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014497	exon2	c.C759A	p.P253P	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73466576	73466576	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015120	exon1	c.G72A	p.E24E	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73532346	73532346	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015120	exon8	c.C5181T	p.D1727D	.	.	.
RTKN	6242	broad.mit.edu	36	2	74507103	74507103	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001015056	exon12	c.G1317A	p.Q439Q	.	.	.
EIF2AK3	9451	broad.mit.edu	36	2	88655881	88655881	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004836	exon13	c.A2235G	p.G745G	.	.	.
CPSF3	51692	broad.mit.edu	36	2	9490256	9490256	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016207	exon5	c.C507T	p.I169I	.	.	.
PROM2	150696	broad.mit.edu	36	2	95316314	95316314	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144707	exon18	c.C2076A	p.S692S	.	.	.
RBM45	129831	broad.mit.edu	36	2	178697166	178697166	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152945	exon8	c.1135delA	p.K379fs	.	.	.
STK17B	9262	broad.mit.edu	36	2	196729546	196729546	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004226	exon3	c.197delA	p.K66fs	.	.	.
CASP8	841	broad.mit.edu	36	2	201859535	201859535	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033356	exon8	c.1368delA	p.R456fs	.	.	.
NRP2	8828	broad.mit.edu	36	2	206336710	206336710	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201266	exon13	c.2112delC	p.S704fs	.	.	.
GPR113	165082	broad.mit.edu	36	2	26387917	26387917	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145169	exon10	c.1976delG	p.G659fs	.	.	.
SEC61B	10952	broad.mit.edu	36	9	101032520	101032520	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006808	exon4	c.G284A	p.R95H	.	.	.
C9orf125	84302	broad.mit.edu	36	9	103278522	103278522	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032342	exon2	c.A674T	p.E225V	.	.	.
KIAA1958	158405	broad.mit.edu	36	9	114462063	114462063	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133465	exon4	c.G2044A	p.V682I	.	.	.
POLE3	54107	broad.mit.edu	36	9	115211781	115211781	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017443	exon4	c.T201C	p.S67S	.	.	.
TNC	3371	broad.mit.edu	36	9	116889051	116889051	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002160	exon3	c.C780T	p.H260H	.	.	.
PAPPA	5069	broad.mit.edu	36	9	118137004	118137004	+	Silent	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002581	exon13	c.T3441A	p.P1147P	.	.	.
ASTN2	23245	broad.mit.edu	36	9	118242843	118242843	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198186	exon7	c.G951T	p.K317N	.	.	.
TRIM32	22954	broad.mit.edu	36	9	118500524	118500524	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099679	exon2	c.C682T	p.L228F	.	.	.
ASTN2	23245	broad.mit.edu	36	9	118778878	118778878	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014010	exon7	c.C1446T	p.C482C	.	.	.
DBC1	1620	broad.mit.edu	36	9	120969869	120969869	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014618	exon8	c.C1600T	p.R534C	.	.	.
C5	727	broad.mit.edu	36	9	122771198	122771198	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001735	exon33	c.C4182T	p.Y1394Y	.	.	.
CEP110	11064	broad.mit.edu	36	9	122943586	122943586	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007018	exon16	c.A2590G	p.R864G	.	.	.
OR1L6	392390	broad.mit.edu	36	9	124552306	124552306	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004453	exon1	c.C359T	p.A120V	.	.	.
NR6A1	2649	broad.mit.edu	36	9	126356578	126356578	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033334	exon3	c.G235T	p.G79C	.	.	.
SH2D3C	10044	broad.mit.edu	36	9	129546702	129546702	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142532	exon6	c.C700A	p.R234R	.	.	.
BAT2L1	84726	broad.mit.edu	36	9	133341401	133341401	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013318	exon15	c.G4064A	p.G1355D	.	.	.
POMT1	10585	broad.mit.edu	36	9	133369531	133369531	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007171	exon2	c.C105A	p.T35T	.	.	.
C9orf171	389799	broad.mit.edu	36	9	134364660	134364660	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207417	exon4	c.G484A	p.G162R	.	.	.
BARHL1	56751	broad.mit.edu	36	9	134448335	134448335	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020064	exon1	c.C330A	p.A110A	.	.	.
DDX31	64794	broad.mit.edu	36	9	134483592	134483592	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022779	exon18	c.G2086T	p.V696L	.	.	.
RALGDS	5900	broad.mit.edu	36	9	134969501	134969501	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006266	exon10	c.C1641T	p.P547P	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136762022	136762022	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000093	exon7	c.G1044A	p.T348T	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136850400	136850400	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000093	exon55	c.G4308A	p.P1436P	.	.	.
LCN1	3933	broad.mit.edu	36	9	137553194	137553194	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002297	exon1	c.T30C	p.L10L	.	.	.
COBRA1	25920	broad.mit.edu	36	9	139286406	139286406	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015456	exon11	c.G1398A	p.T466T	.	.	.
PNPLA7	375775	broad.mit.edu	36	9	139494644	139494644	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152286	exon22	c.C2446T	p.R816C	.	.	.
IFNB1	3456	broad.mit.edu	36	9	21067312	21067312	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002176	exon1	c.G557A	p.R186Q	.	.	.
IFNA4	3441	broad.mit.edu	36	9	21177406	21177406	+	Missense_Mutation	SNP	G	A	A	rs2230853	by-frequency	TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021068	exon1	c.C125T	p.A42V	.	.	.
UNC13B	10497	broad.mit.edu	36	9	35365189	35365189	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006377	exon13	c.C1359T	p.D453D	.	.	.
RUSC2	9853	broad.mit.edu	36	9	35548361	35548361	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014806	exon7	c.A3228G	p.T1076T	.	.	.
C9orf100	84904	broad.mit.edu	36	9	35652255	35652255	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032818	exon8	c.C913A	p.P305T	.	.	.
FBXO10	26267	broad.mit.edu	36	9	37506069	37506069	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012166	exon10	c.G2528A	p.R843Q	.	.	.
SLC1A1	6505	broad.mit.edu	36	9	4551502	4551502	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004170	exon3	c.G286A	p.V96M	.	.	.
RCL1	10171	broad.mit.edu	36	9	4816944	4816944	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005772	exon3	c.C295A	p.L99M	.	.	.
ERMP1	79956	broad.mit.edu	36	9	5820927	5820927	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024896	exon2	c.T440C	p.I147T	.	.	.
ANKRD20A3	441425	broad.mit.edu	36	9	67558105	67558105	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012419	exon15	c.C1844G	p.A615G	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78510229	78510229	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015225	exon8	c.C6781T	p.P2261S	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78512750	78512750	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015225	exon8	c.C4260T	p.S1420S	.	.	.
KIF27	55582	broad.mit.edu	36	9	85672538	85672538	+	Missense_Mutation	SNP	G	A	A	rs3199677	unknown	TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017576	exon13	c.C2815T	p.R939C	.	.	.
GOLM1	51280	broad.mit.edu	36	9	87884014	87884014	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177937	exon2	c.G42A	p.P14P	.	.	.
SEMA4D	10507	broad.mit.edu	36	9	91197193	91197193	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142287	exon10	c.C587A	p.P196H	.	.	.
SEMA4D	10507	broad.mit.edu	36	9	91207635	91207635	+	Missense_Mutation	SNP	C	T	T	rs62620228	unknown	TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142287	exon6	c.G223A	p.A75T	.	.	.
CENPP	401541	broad.mit.edu	36	9	94413433	94413433	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012267	exon6	c.C581T	p.A194V	.	.	.
NINJ1	4814	broad.mit.edu	36	9	94928594	94928594	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004148	exon2	c.G223A	p.A75T	.	.	.
HIATL1	84641	broad.mit.edu	36	9	96231317	96231317	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032558	exon3	c.A230G	p.H77R	.	.	.
TDRD7	23424	broad.mit.edu	36	9	99297940	99297940	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014290	exon17	c.A3251C	p.H1084P	.	.	.
WNK2	65268	broad.mit.edu	36	9	95094701	95094701	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006648	exon22	c.5133delG	p.V1711fs	.	.	.
CUL4A	8451	broad.mit.edu	36	13	112965888	112965888	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008895	exon20	c.C2271T	p.Y757Y	.	.	.
TMCO3	55002	broad.mit.edu	36	13	113198009	113198009	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017905	exon2	c.G112A	p.G38R	.	.	.
SACS	26278	broad.mit.edu	36	13	22809376	22809376	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014363	exon10	c.C6639T	p.I2213I	.	.	.
C1QTNF9B	387911	broad.mit.edu	36	13	23369047	23369047	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007537	exon1	c.C79T	p.H27Y	.	.	.
USPL1	10208	broad.mit.edu	36	13	30103574	30103574	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005800	exon4	c.T831A	p.N277K	.	.	.
HSPH1	10808	broad.mit.edu	36	13	30617802	30617802	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006644	exon11	c.G1482A	p.T494T	.	.	.
RXFP2	122042	broad.mit.edu	36	13	31230518	31230518	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166058	exon2	c.A218G	p.N73S	.	.	.
BRCA2	675	broad.mit.edu	36	13	31798641	31798641	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000059	exon7	c.T522C	p.R174R	.	.	.
MAB21L1	4081	broad.mit.edu	36	13	34947870	34947870	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005584	exon1	c.G406T	p.V136L	.	.	.
FAM48A	55578	broad.mit.edu	36	13	36501971	36501971	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017569	exon13	c.G927A	p.V309V	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37164412	37164412	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135957	exon4	c.G958T	p.G320C	.	.	.
FREM2	341640	broad.mit.edu	36	13	38163704	38163704	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207361	exon1	c.G4223A	p.R1408H	.	.	.
AKAP11	11215	broad.mit.edu	36	13	41773393	41773393	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016248	exon8	c.T2511C	p.C837C	.	.	.
COG3	83548	broad.mit.edu	36	13	45006844	45006844	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031431	exon23	c.C2464A	p.L822I	.	.	.
INTS6	26512	broad.mit.edu	36	13	50846379	50846379	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012141	exon15	c.G2070A	p.Q690Q	.	.	.
NEK3	4752	broad.mit.edu	36	13	51623347	51623347	+	Silent	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146099	exon7	c.C483A	p.T161T	.	.	.
PCDH8	5100	broad.mit.edu	36	13	52316990	52316990	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032949	exon3	c.C2628T	p.N876N	.	.	.
KLHL1	57626	broad.mit.edu	36	13	69579775	69579775	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020866	exon1	c.A58T	p.K20X	.	.	.
TBC1D4	9882	broad.mit.edu	36	13	74834169	74834169	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014832	exon2	c.C1074T	p.L358L	.	.	.
SLAIN1	122060	broad.mit.edu	36	13	77233208	77233208	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144595	exon5	c.T804C	p.S268S	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77390481	77390481	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122659	exon1	c.A229G	p.T77A	.	.	.
POU4F1	5457	broad.mit.edu	36	13	78075388	78075388	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006237	exon1	c.G75A	p.L25L	.	.	.
SLITRK6	84189	broad.mit.edu	36	13	85268320	85268320	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032229	exon2	c.A325G	p.N109D	.	.	.
GPR180	160897	broad.mit.edu	36	13	94069479	94069479	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_180989	exon4	c.C580T	p.Q194X	.	.	.
MBNL2	10150	broad.mit.edu	36	13	96816723	96816723	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144778	exon8	c.T1004C	p.M335T	.	.	.
FARP1	10160	broad.mit.edu	36	13	97845519	97845519	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005766	exon13	c.C1202T	p.A401V	.	.	.
DOCK9	23348	broad.mit.edu	36	13	98247397	98247397	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015296	exon54	c.G6170T	p.R2057M	.	.	.
CLYBL	171425	broad.mit.edu	36	13	99316647	99316647	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206808	exon6	c.G787T	p.A263S	.	.	.
PCCA	5095	broad.mit.edu	36	13	99713070	99713070	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178004	exon10	c.G803A	p.R268H	.	.	.
BRCA2	675	broad.mit.edu	36	13	31811436	31811436	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000059	exon11	c.4944delA	p.A1648fs	.	.	.
PKD2L1	9033	broad.mit.edu	36	10	102048479	102048479	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016112	exon4	c.C561T	p.F187F	.	.	.
FBXW4	6468	broad.mit.edu	36	10	103423343	103423343	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022039	exon3	c.G434A	p.R145H	.	.	.
HPS6	79803	broad.mit.edu	36	10	103816678	103816678	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024747	exon1	c.C1457T	p.A486V	.	.	.
GBF1	8729	broad.mit.edu	36	10	104116245	104116245	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199378	exon19	c.C2425T	p.R809C	.	.	.
SLK	9748	broad.mit.edu	36	10	105752632	105752632	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014720	exon9	c.C1706T	p.T569M	.	.	.
SORCS3	22986	broad.mit.edu	36	10	106839579	106839579	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014978	exon6	c.C1085T	p.T362M	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114901603	114901603	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146284	exon9	c.C1050T	p.S350S	.	.	.
DCLRE1A	9937	broad.mit.edu	36	10	115599478	115599478	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014881	exon2	c.C1376T	p.P459L	.	.	.
PNLIPRP2	5408	broad.mit.edu	36	10	118370818	118370818	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005396	exon2	c.C14A	p.P5H	.	.	.
WDR11	55717	broad.mit.edu	36	10	122655431	122655431	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018117	exon27	c.C3345T	p.H1115H	.	.	.
FGFR2	2263	broad.mit.edu	36	10	123266901	123266901	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144916	exon5	c.G661A	p.D221N	.	.	.
FGFR2	2263	broad.mit.edu	36	10	123300902	123300902	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144916	exon2	c.C171T	p.A57A	.	.	.
BUB3	9184	broad.mit.edu	36	10	124910045	124910045	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007793	exon5	c.T550C	p.C184R	.	.	.
DHX32	55760	broad.mit.edu	36	10	127538229	127538229	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018180	exon3	c.G782A	p.R261H	.	.	.
PTPRE	5791	broad.mit.edu	36	10	129735924	129735924	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130435	exon1	c.T22C	p.S8P	.	.	.
OPTN	10133	broad.mit.edu	36	10	13214195	13214195	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021980	exon12	c.C1524T	p.D508D	.	.	.
SUV39H2	79723	broad.mit.edu	36	10	14983148	14983148	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193427	exon5	c.A287G	p.N96S	.	.	.
CUBN	8029	broad.mit.edu	36	10	16907006	16907006	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081	exon67	c.G10846A	p.A3616T	.	.	.
CACNB2	783	broad.mit.edu	36	10	18867219	18867219	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201596	exon13	c.T1407C	p.S469S	.	.	.
ARMC3	219681	broad.mit.edu	36	10	23337773	23337773	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173081	exon16	c.C1952T	p.A651V	.	.	.
MSRB2	22921	broad.mit.edu	36	10	23433138	23433138	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012228	exon2	c.C178A	p.P60T	.	.	.
ARHGAP21	57584	broad.mit.edu	36	10	24929833	24929833	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020824	exon14	c.G2880A	p.Q960Q	.	.	.
ANKRD26	22852	broad.mit.edu	36	10	27366945	27366945	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014915	exon22	c.C2420T	p.T807M	.	.	.
PITRM1	10531	broad.mit.edu	36	10	3202380	3202380	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014889	exon2	c.G75A	p.A25A	.	.	.
ITGB1	3688	broad.mit.edu	36	10	33237405	33237405	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133376	exon15	c.T2228C	p.I743T	.	.	.
PARD3	56288	broad.mit.edu	36	10	34448551	34448551	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184787	exon23	c.C3562T	p.P1188S	.	.	.
ZNF33A	7581	broad.mit.edu	36	10	38346242	38346242	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006954	exon4	c.C172A	p.P58T	.	.	.
ZNF33A	7581	broad.mit.edu	36	10	38383829	38383829	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006954	exon5	c.T771C	p.C257C	.	.	.
RET	5979	broad.mit.edu	36	10	42937404	42937404	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020975	exon16	c.G2735T	p.R912L	.	.	.
RASSF4	83937	broad.mit.edu	36	10	44787229	44787229	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032023	exon3	c.C65T	p.S22L	.	.	.
SYT15	83849	broad.mit.edu	36	10	46387718	46387718	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181519	exon4	c.G365A	p.C122Y	.	.	.
C10orf71	118461	broad.mit.edu	36	10	50201574	50201574	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135196	exon3	c.G978T	p.Q326H	.	.	.
FAM13C	220965	broad.mit.edu	36	10	60792171	60792171	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001971	exon1	c.T56C	p.V19A	.	.	.
ARID5B	84159	broad.mit.edu	36	10	63487056	63487056	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032199	exon6	c.C1021T	p.R341X	.	.	.
VPS26A	9559	broad.mit.edu	36	10	70592267	70592267	+	Silent	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001035260	exon6	c.A651G	p.T217T	.	.	.
AIFM2	84883	broad.mit.edu	36	10	71544724	71544724	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198696	exon8	c.G928A	p.V310I	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7279568	7279568	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029880	exon15	c.C1646T	p.A549V	.	.	.
USP54	159195	broad.mit.edu	36	10	74946922	74946922	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152586	exon18	c.G3268A	p.V1090M	.	.	.
SEC24C	9632	broad.mit.edu	36	10	75190079	75190079	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198597	exon5	c.T779A	p.M260K	.	.	.
MYST4	23522	broad.mit.edu	36	10	76460545	76460545	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012330	exon18	c.T5957C	p.M1986T	.	.	.
POLR3A	11128	broad.mit.edu	36	10	79412048	79412048	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007055	exon28	c.C3629G	p.A1210G	.	.	.
RGR	5995	broad.mit.edu	36	10	85997389	85997389	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012720	exon2	c.C142T	p.R48W	.	.	.
FAM190B	54462	broad.mit.edu	36	10	86263260	86263260	+	Missense_Mutation	SNP	C	T	T	rs61747212	unknown	TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018999	exon11	c.C2486T	p.T829M	.	.	.
LIPK	643414	broad.mit.edu	36	10	90474287	90474287	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080518	exon1	c.C7T	p.Q3X	.	.	.
ZNF518A	9849	broad.mit.edu	36	10	97906605	97906605	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014803	exon6	c.G536A	p.C179Y	.	.	.
RRP12	23223	broad.mit.edu	36	10	99121868	99121868	+	De_novo_Start_InFrame	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015179	exon20	c.C2295T	p.D765D	.	.	.
PI4K2A	55361	broad.mit.edu	36	10	99400870	99400870	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018425	exon2	c.C618G	p.N206K	.	.	.
C10orf28	27291	broad.mit.edu	36	10	99958330	99958330	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014472	exon4	c.G469T	p.G157X	.	.	.
ARID5B	84159	broad.mit.edu	36	10	63522124	63522124	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032199	exon10	c.2896delA	p.K966fs	.	.	.
CEP55	55165	broad.mit.edu	36	10	95266734	95266734	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018131	exon6	c.732delA	p.A244fs	.	.	.
SLIT1	6585	broad.mit.edu	36	10	98789852	98789852	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3710-01	TCGA-AA-3710-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003061	exon21	c.2180delG	p.G727fs	.	.	.
CAMK4	814	broad.mit.edu	36	5	110588101	110588101	+	Silent	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001744	exon1	c.C21A	p.P7P	.	.	.
APC	324	broad.mit.edu	36	5	112144450	112144450	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon5	c.C626T	p.A209V	.	.	.
APC	324	broad.mit.edu	36	5	112202951	112202951	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127511	exon14	c.T3707A	p.I1236N	APC,large_intestine,rectum,Substitution - Missense,+1	.	.
TRIM36	55521	broad.mit.edu	36	5	114527156	114527156	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018700	exon2	c.C256A	p.P86T	.	.	.
CCDC112	153733	broad.mit.edu	36	5	114634923	114634923	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040440	exon7	c.G1218A	p.Q406Q	.	.	.
SEMA6A	57556	broad.mit.edu	36	5	115841444	115841444	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020796	exon15	c.G1646A	p.S549N	.	.	.
FAM170A	340069	broad.mit.edu	36	5	118997951	118997951	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182761	exon3	c.G609A	p.L203L	.	.	.
CEP120	153241	broad.mit.edu	36	5	122753625	122753625	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166226	exon8	c.G1069A	p.V357M	.	.	.
PRRC1	133619	broad.mit.edu	36	5	126915437	126915437	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130809	exon9	c.A1268C	p.Q423P	.	.	.
SLC12A2	6558	broad.mit.edu	36	5	127521682	127521682	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001046	exon16	c.G2402A	p.R801H	.	.	.
C5orf56	441108	broad.mit.edu	36	5	131824357	131824357	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013717	exon4	c.T293C	p.L98P	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13936128	13936128	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001369	exon20	c.A3059T	p.N1020I	.	.	.
PCDHA13	56136	broad.mit.edu	36	5	140243878	140243878	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031865	exon1	c.C1841T	p.A614V	.	.	.
PCDHB8	56128	broad.mit.edu	36	5	140539390	140539390	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019120	exon1	c.C1591T	p.R531W	.	.	.
PCDHB15	56121	broad.mit.edu	36	5	140606672	140606672	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018935	exon1	c.G1342A	p.A448T	.	.	.
PCDHGA4	56111	broad.mit.edu	36	5	140716444	140716444	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018917	exon1	c.G1493A	p.G498D	.	.	.
PCDHGA6	56109	broad.mit.edu	36	5	140735090	140735090	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032086	exon1	c.A1256T	p.N419I	.	.	.
PCDHGC4	56098	broad.mit.edu	36	5	140845319	140845319	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032406	exon1	c.G395A	p.R132H	.	.	.
TRIO	7204	broad.mit.edu	36	5	14416841	14416841	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007118	exon14	c.A2392G	p.I798V	.	.	.
ABLIM3	22885	broad.mit.edu	36	5	148593056	148593056	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014945	exon10	c.C888T	p.C296C	.	.	.
SLC26A2	1836	broad.mit.edu	36	5	149340344	149340344	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000112	exon3	c.C995T	p.P332L	.	.	.
TNIP1	10318	broad.mit.edu	36	5	150420091	150420091	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006058	exon5	c.G416A	p.S139N	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167421697	167421697	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122679	exon7	c.G1364A	p.R455Q	.	.	.
DDX41	51428	broad.mit.edu	36	5	176875971	176875971	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016222	exon3	c.G222T	p.E74D	.	.	.
BTNL8	79908	broad.mit.edu	36	5	180268204	180268204	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024850	exon2	c.T62G	p.V21G	.	.	.
CDH18	1016	broad.mit.edu	36	5	19519262	19519262	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004934	exon12	c.G1787A	p.R596H	.	.	.
CDH10	1008	broad.mit.edu	36	5	24524012	24524012	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006727	exon12	c.A1884G	p.V628V	.	.	.
CDH10	1008	broad.mit.edu	36	5	24573261	24573261	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006727	exon3	c.G511A	p.E171K	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32109861	32109861	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178140	exon17	c.C2892T	p.C964C	.	.	.
ZFR	51663	broad.mit.edu	36	5	32415973	32415973	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016107	exon16	c.G2704A	p.A902T	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33624632	33624632	+	Silent	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030955	exon18	c.C2694T	p.C898C	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33660167	33660167	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030955	exon14	c.G2069A	p.R690H	.	.	.
UGT3A1	133688	broad.mit.edu	36	5	35991661	35991661	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152404	exon6	c.C1138T	p.R380C	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37036932	37036932	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015384	exon14	c.C3659T	p.A1220V	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37189747	37189747	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023073	exon41	c.C8063A	p.P2688H	.	.	.
C9	735	broad.mit.edu	36	5	39377135	39377135	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001737	exon4	c.C346T	p.R116X	.	.	.
GHR	2690	broad.mit.edu	36	5	42754959	42754959	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000163	exon10	c.C1593G	p.D531E	.	.	.
MGC42105	167359	broad.mit.edu	36	5	43313010	43313010	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153361	exon3	c.C387A	p.H129Q	.	.	.
ACTBL2	345651	broad.mit.edu	36	5	56813606	56813606	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017992	exon1	c.T686C	p.V229A	.	.	.
MAST4	375449	broad.mit.edu	36	5	66496096	66496096	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015183	exon28	c.A4766C	p.E1589A	.	.	.
CDK7	1022	broad.mit.edu	36	5	68567003	68567003	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001799	exon2	c.T93C	p.D31D	.	.	.
ADCY2	108	broad.mit.edu	36	5	7743813	7743813	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020546	exon5	c.C730T	p.L244L	.	.	.
BHMT2	23743	broad.mit.edu	36	5	78414808	78414808	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178005	exon5	c.C444T	p.P148P	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79063980	79063980	+	Silent	SNP	T	C	C	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153610	exon2	c.T3636C	p.D1212D	.	.	.
HAPLN1	1404	broad.mit.edu	36	5	82976208	82976208	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001884	exon4	c.C505T	p.R169C	.	.	.
EDIL3	10085	broad.mit.edu	36	5	83511971	83511971	+	Silent	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005711	exon4	c.G351A	p.Q117Q	.	.	.
TRIP13	9319	broad.mit.edu	36	5	967598	967598	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004237	exon11	c.C1039T	p.R347C	.	.	.
WT1-AS	51352	broad.mit.edu	36	11	32417097	32417097	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3710-01	TCGA-AA-3710-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
