Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ZNF831	128611	broad.mit.edu	36	20	57202534	57202535	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178457	exon1	c.3065_3066insG	p.L1022fs	.	.	.
INF2	64423	broad.mit.edu	36	14	104245229	104245230	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031714	exon8	c.1580_1581insC	p.S527fs	.	.	.
ACOT4	122970	broad.mit.edu	36	14	73130264	73130265	+	Frame_Shift_Ins	INS	-	TCAA	TCAA	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152331	exon2	c.563_564insTCAA	p.L188fs	.	.	.
ADAM7	8756	broad.mit.edu	36	8	24405307	24405308	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003817	exon14	c.1358_1359insA	p.I453fs	.	.	.
LMNB2	84823	broad.mit.edu	36	19	2382861	2382862	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032737	exon10	c.1570_1571insC	p.S524fs	.	.	.
EPS8L2	64787	broad.mit.edu	36	11	713304	713305	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022772	exon15	c.1405_1406insC	p.T469fs	.	.	.
COL1A1	1277	broad.mit.edu	36	17	45627098	45627099	+	Frame_Shift_Ins	INS	-	TA	TA	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000088	exon21	c.1444_1445insTA	p.G482_P483delinsX	.	.	.
RPS6KB1	6198	broad.mit.edu	36	17	55378871	55378872	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003161	exon15	c.1518_1519insA	p.Y506fs	.	.	.
C4orf45	152940	broad.mit.edu	36	4	160175638	160175639	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152543	exon1	c.61_62insT	p.T21fs	.	.	.
SLC46A3	283537	broad.mit.edu	36	13	28185157	28185158	+	Frame_Shift_Ins	INS	-	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181785	exon3	c.720_721insA	p.N240fs	.	.	.
ACTL6B	51412	broad.mit.edu	36	7	100090578	100090578	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016188	exon4	c.G369A	p.P123P	.	.	.
EPHB4	2050	broad.mit.edu	36	7	100255154	100255154	+	Missense_Mutation	SNP	C	T	T	rs61735975	unknown	TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004444	exon6	c.G1258A	p.V420I	.	.	.
MLL5	55904	broad.mit.edu	36	7	104489908	104489908	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182931	exon4	c.T133C	p.L45L	.	.	.
PIK3CG	5294	broad.mit.edu	36	7	106296062	106296062	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002649	exon2	c.G820A	p.V274I	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107475729	107475729	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007356	exon28	c.G4186T	p.G1396C	.	.	.
IMMP2L	83943	broad.mit.edu	36	7	110090922	110090922	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032549	exon6	c.G500A	p.R167H	.	.	.
IMMP2L	83943	broad.mit.edu	36	7	110390834	110390834	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032549	exon4	c.A263C	p.K88T	.	.	.
GPR85	54329	broad.mit.edu	36	7	112511024	112511024	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146267	exon3	c.C989T	p.A330V	.	.	.
CADPS2	93664	broad.mit.edu	36	7	122090762	122090762	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167940	exon3	c.G551A	p.R184H	.	.	.
FSCN3	29999	broad.mit.edu	36	7	127023629	127023629	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020369	exon3	c.C853T	p.R285C	.	.	.
SND1	27044	broad.mit.edu	36	7	127130520	127130520	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014390	exon7	c.A747T	p.K249N	.	.	.
C7orf68	29923	broad.mit.edu	36	7	127884663	127884663	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098786	exon2	c.G105A	p.S35S	.	.	.
SMO	6608	broad.mit.edu	36	7	128635873	128635873	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005631	exon7	c.C1302T	p.P434P	.	.	.
CPA4	51200	broad.mit.edu	36	7	129735393	129735393	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163446	exon7	c.G614A	p.W205X	.	.	.
TBXAS1	6916	broad.mit.edu	36	7	139175674	139175674	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001061	exon1	c.T19C	p.F7L	.	.	.
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0	.	.
PRSS1	5644	broad.mit.edu	36	7	142139373	142139373	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002769	exon3	c.C375T	p.T125T	.	.	.
EPHB6	2051	broad.mit.edu	36	7	142273933	142273933	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004445	exon9	c.A1199G	p.D400G	.	.	.
OR2F2	135948	broad.mit.edu	36	7	143263487	143263487	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004685	exon1	c.G229A	p.V77I	.	.	.
ZNF786	136051	broad.mit.edu	36	7	148398591	148398591	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152411	exon4	c.G2206A	p.D736N	.	.	.
GIMAP8	155038	broad.mit.edu	36	7	149795011	149795011	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175571	exon2	c.C292T	p.L98F	.	.	.
NOS3	4846	broad.mit.edu	36	7	150341795	150341795	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000603	exon26	c.C3306T	p.R1102R	.	.	.
PAXIP1	22976	broad.mit.edu	36	7	154383575	154383575	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007349	exon12	c.C2395T	p.P799S	.	.	.
HTR5A	3361	broad.mit.edu	36	7	154493996	154493996	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024012	exon1	c.C454T	p.R152C	.	.	.
OSBPL3	26031	broad.mit.edu	36	7	24810544	24810544	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145321	exon21	c.C2374T	p.Q792X	.	.	.
HOXA7	3204	broad.mit.edu	36	7	27161267	27161267	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006896	exon2	c.G479A	p.R160H	.	.	.
TRIL	9865	broad.mit.edu	36	7	28963867	28963867	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014817	exon1	c.G321A	p.S107S	.	.	.
RP9	6100	broad.mit.edu	36	7	33105474	33105474	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203288	exon3	c.C283T	p.P95S	.	.	.
GPR141	353345	broad.mit.edu	36	7	37747218	37747218	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181791	exon1	c.T698C	p.V233A	.	.	.
SFRP4	6424	broad.mit.edu	36	7	37922617	37922617	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003014	exon1	c.G48A	p.A16A	.	.	.
SDK1	221935	broad.mit.edu	36	7	4136130	4136130	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152744	exon27	c.C4004T	p.T1335M	.	.	.
SDK1	221935	broad.mit.edu	36	7	4164698	4164698	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152744	exon31	c.C4718T	p.T1573M	.	.	.
SDK1	221935	broad.mit.edu	36	7	4227494	4227494	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152744	exon40	c.G5799A	p.T1933T	.	.	.
HECW1	23072	broad.mit.edu	36	7	43556712	43556712	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015052	exon27	c.C4392T	p.Y1464Y	.	.	.
C7orf44	55744	broad.mit.edu	36	7	43653729	43653729	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018224	exon3	c.G45A	p.L15L	.	.	.
NPC1L1	29881	broad.mit.edu	36	7	44545636	44545636	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013389	exon2	c.C885T	p.F295F	.	.	.
TBRG4	9238	broad.mit.edu	36	7	45111831	45111831	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199122	exon3	c.G469T	p.G157C	.	.	.
MMD2	221938	broad.mit.edu	36	7	4922204	4922204	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198403	exon4	c.G323A	p.R108Q	.	.	.
RNF216	54476	broad.mit.edu	36	7	5747317	5747317	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207116	exon4	c.G686C	p.G229A	.	.	.
PMS2	5395	broad.mit.edu	36	7	5996108	5996108	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000535	exon10	c.C993T	p.C331C	.	.	.
USP42	84132	broad.mit.edu	36	7	6163089	6163089	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032172	exon16	c.A3820G	p.R1274G	.	.	.
ZNF273	10793	broad.mit.edu	36	7	64015452	64015452	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021148	exon2	c.T161C	p.L54P	.	.	.
AUTS2	26053	broad.mit.edu	36	7	68702781	68702781	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015570	exon1	c.G206A	p.R69Q	.	.	.
AUTS2	26053	broad.mit.edu	36	7	69893030	69893030	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015570	exon19	c.G2892A	p.P964P	.	.	.
ABHD11	83451	broad.mit.edu	36	7	72788903	72788903	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148912	exon6	c.G870A	p.T290T	.	.	.
LIMK1	3984	broad.mit.edu	36	7	73151332	73151332	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002314	exon5	c.G436A	p.V146I	.	.	.
ZP3	7784	broad.mit.edu	36	7	75900883	75900883	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007155	exon5	c.C543T	p.T181T	.	.	.
GRM3	2913	broad.mit.edu	36	7	86306795	86306795	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000840	exon4	c.G2029A	p.A677T	.	.	.
SUN1	23353	broad.mit.edu	36	7	872182	872182	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130965	exon16	c.T1932C	p.F644F	.	.	.
C7orf63	79846	broad.mit.edu	36	7	89755513	89755513	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160138	exon15	c.C1632T	p.I544I	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91546389	91546389	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_147185	exon31	c.A6982G	p.S2328G	.	.	.
CYP51A1	1595	broad.mit.edu	36	7	91599109	91599109	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000786	exon2	c.A206G	p.Y69C	.	.	.
COL1A2	1278	broad.mit.edu	36	7	93862299	93862299	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000089	exon1	c.C20T	p.T7M	.	.	.
DYNC1I1	1780	broad.mit.edu	36	7	95495497	95495497	+	Silent	SNP	T	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004411	exon11	c.T1095A	p.I365I	.	.	.
ZNF394	84124	broad.mit.edu	36	7	98934276	98934276	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032164	exon2	c.G582A	p.P194P	.	.	.
STAG3	10734	broad.mit.edu	36	7	99637881	99637881	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012447	exon24	c.C2545T	p.P849S	.	.	.
JAG1	182	broad.mit.edu	36	20	10569802	10569802	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000214	exon24	c.G3007A	p.E1003K	.	.	.
JAG1	182	broad.mit.edu	36	20	10573566	10573566	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000214	exon18	c.C2289T	p.G763G	.	.	.
VPS16	64601	broad.mit.edu	36	20	2793025	2793025	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080413	exon14	c.C1303T	p.L435L	.	.	.
UBOX5	22888	broad.mit.edu	36	20	3050420	3050420	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014948	exon3	c.C865T	p.L289L	.	.	.
DNMT3B	1789	broad.mit.edu	36	20	30838825	30838825	+	Silent	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175848	exon6	c.C561A	p.P187P	.	.	.
NECAB3	63941	broad.mit.edu	36	20	31711155	31711155	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031232	exon8	c.C688T	p.R230C	.	.	.
ITCH	83737	broad.mit.edu	36	20	32460217	32460217	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031483	exon4	c.G170A	p.C57Y	.	.	.
MAP1LC3A	84557	broad.mit.edu	36	20	32611285	32611285	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181509	exon5	c.G300A	p.A100A	.	.	.
ATRN	8455	broad.mit.edu	36	20	3523147	3523147	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139322	exon20	c.C3344T	p.A1115V	.	.	.
ZHX3	23051	broad.mit.edu	36	20	39264629	39264629	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015035	exon3	c.A2342G	p.Q781R	.	.	.
TTPAL	79183	broad.mit.edu	36	20	42542272	42542272	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039199	exon2	c.C219T	p.S73S	.	.	.
RIMS4	140730	broad.mit.edu	36	20	42818349	42818349	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182970	exon6	c.G650C	p.R217P	.	.	.
ZNF335	63925	broad.mit.edu	36	20	44029845	44029845	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022095	exon5	c.G749A	p.C250Y	.	.	.
SLC12A5	57468	broad.mit.edu	36	20	44113877	44113877	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020708	exon18	c.C2338T	p.R780C	.	.	.
NCOA5	57727	broad.mit.edu	36	20	44129123	44129123	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020967	exon5	c.A607G	p.I203V	.	.	.
ZNFX1	57169	broad.mit.edu	36	20	47297257	47297257	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021035	exon14	c.C5711T	p.T1904M	.	.	.
NFATC2	4773	broad.mit.edu	36	20	49573757	49573757	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012340	exon2	c.G430A	p.G144R	.	.	.
ZNF217	7764	broad.mit.edu	36	20	51631786	51631786	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006526	exon1	c.C987T	p.S329S	.	.	.
LRRN4	164312	broad.mit.edu	36	20	5970424	5970424	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152611	exon5	c.G1467A	p.S489S	.	.	.
DIDO1	11083	broad.mit.edu	36	20	61009149	61009149	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022105	exon5	c.A1169C	p.E390A	.	.	.
KCNQ2	3785	broad.mit.edu	36	20	61521450	61521450	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172107	exon12	c.G1267T	p.G423W	.	.	.
RTEL1	51750	broad.mit.edu	36	20	61761229	61761229	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016434	exon2	c.C30T	p.T10T	.	.	.
SAMD10	140700	broad.mit.edu	36	20	62078804	62078804	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080621	exon3	c.G409A	p.V137I	.	.	.
TCEA2	6919	broad.mit.edu	36	20	62168294	62168294	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198723	exon3	c.C13T	p.R5W	.	.	.
DDX27	55661	broad.mit.edu	36	20	47291911	47291911	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017895	exon17	c.2065delA	p.K689fs	.	.	.
BEGAIN	57596	broad.mit.edu	36	14	100074618	100074618	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159531	exon6	c.G1223A	p.R408Q	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101536150	101536150	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001376	exon17	c.C3876T	p.D1292D	.	.	.
TRAF3	7187	broad.mit.edu	36	14	102441550	102441550	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145725	exon12	c.C1383T	p.N461N	.	.	.
MARK3	4140	broad.mit.edu	36	14	103039186	103039186	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128919	exon17	c.G2104A	p.V702M	.	.	.
PPP1R13B	23368	broad.mit.edu	36	14	103272192	103272192	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015316	exon16	c.C3132T	p.D1044D	.	.	.
TEP1	7011	broad.mit.edu	36	14	19924567	19924567	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007110	exon19	c.C2740T	p.R914W	.	.	.
OR6S1	341799	broad.mit.edu	36	14	20179648	20179648	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001968	exon1	c.G43A	p.V15I	.	.	.
TPPP2	122664	broad.mit.edu	36	14	20569092	20569092	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173846	exon3	c.G255C	p.K85N	.	.	.
ARHGEF40	55701	broad.mit.edu	36	14	20613690	20613690	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018071	exon5	c.G1665A	p.P555P	.	.	.
SUPT16H	11198	broad.mit.edu	36	14	20901134	20901134	+	Silent	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007192	exon13	c.A1410C	p.A470A	.	.	.
CHD8	57680	broad.mit.edu	36	14	20923862	20923862	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020920	exon38	c.C6659A	p.P2220H	.	.	.
LRP10	26020	broad.mit.edu	36	14	22416011	22416011	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014045	exon7	c.G1577A	p.R526H	.	.	.
PSMB11	122706	broad.mit.edu	36	14	22581772	22581772	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099780	exon1	c.C498T	p.D166D	.	.	.
SLC7A8	23428	broad.mit.edu	36	14	22667201	22667201	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182728	exon8	c.C699T	p.F233F	.	.	.
DCAF11	80344	broad.mit.edu	36	14	23656428	23656428	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163484	exon4	c.C397T	p.R133X	.	.	.
IPO4	79711	broad.mit.edu	36	14	23725809	23725809	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024658	exon9	c.C785T	p.A262V	.	.	.
TSSK4	283629	broad.mit.edu	36	14	23745573	23745573	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174944	exon2	c.C244T	p.H82Y	.	.	.
NFATC4	4776	broad.mit.edu	36	14	23909066	23909066	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136022	exon3	c.C811T	p.R271C	.	.	.
KHNYN	23351	broad.mit.edu	36	14	23970764	23970764	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015299	exon3	c.G457A	p.G153R	.	.	.
GZMH	2999	broad.mit.edu	36	14	24147419	24147419	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033423	exon2	c.G95A	p.R32H	.	.	.
NOVA1	4857	broad.mit.edu	36	14	25987723	25987723	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002515	exon5	c.G806T	p.G269V	.	.	.
HECTD1	25831	broad.mit.edu	36	14	30672354	30672354	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015382	exon24	c.G3763A	p.A1255T	.	.	.
C14orf37	145407	broad.mit.edu	36	14	57674651	57674651	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001872	exon2	c.T1179C	p.T393T	.	.	.
RTN1	6252	broad.mit.edu	36	14	59263615	59263615	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021136	exon3	c.C1540T	p.R514W	.	.	.
PPM1A	5494	broad.mit.edu	36	14	59819598	59819598	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021003	exon2	c.A424G	p.I142V	.	.	.
SIX1	6495	broad.mit.edu	36	14	60182834	60182834	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005982	exon2	c.G775A	p.G259S	.	.	.
GPHN	10243	broad.mit.edu	36	14	66701683	66701683	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024218	exon19	c.C1863G	p.I621M	.	.	.
GALNTL1	57452	broad.mit.edu	36	14	68857197	68857197	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020692	exon2	c.C194T	p.S65L	.	.	.
SIPA1L1	26037	broad.mit.edu	36	14	71124515	71124515	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015556	exon2	c.G173A	p.R58Q	.	.	.
ABCD4	5826	broad.mit.edu	36	14	73823225	73823225	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005050	exon18	c.C1684T	p.L562F	.	.	.
FAM164C	79696	broad.mit.edu	36	14	74608170	74608170	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024643	exon2	c.G1141A	p.G381S	.	.	.
PTPN21	11099	broad.mit.edu	36	14	88016359	88016359	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007039	exon13	c.G1169A	p.R390H	.	.	.
KCNK13	56659	broad.mit.edu	36	14	89720462	89720462	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022054	exon2	c.G589A	p.V197I	.	.	.
TTC7B	145567	broad.mit.edu	36	14	90191154	90191154	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010854	exon12	c.G1395A	p.T465T	.	.	.
CATSPERB	79820	broad.mit.edu	36	14	91195960	91195960	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024764	exon15	c.G1406A	p.R469H	.	.	.
ASB2	51676	broad.mit.edu	36	14	93475319	93475319	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016150	exon6	c.G1361A	p.G454D	.	.	.
ASB2	51676	broad.mit.edu	36	14	93475551	93475551	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016150	exon6	c.T1129C	p.Y377H	.	.	.
SERPINA4	5267	broad.mit.edu	36	14	94103229	94103229	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006215	exon3	c.C819T	p.D273D	.	.	.
CYP46A1	10858	broad.mit.edu	36	14	99236159	99236159	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006668	exon5	c.G411A	p.Q137Q	.	.	.
PPP1R13B	23368	broad.mit.edu	36	14	103278171	103278171	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015316	exon11	c.1531delC	p.Q511fs	.	.	.
ASPG	374569	broad.mit.edu	36	14	103641437	103641437	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080464	exon10	c.1070delG	p.R357fs	.	.	.
ACOT4	122970	broad.mit.edu	36	14	73130267	73130270	+	Frame_Shift_Del	DEL	CTTA	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152331	exon2	c.566_569del	p.189_190del	.	.	.
GAB4	128954	broad.mit.edu	36	22	15853038	15853038	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037814	exon2	c.G203A	p.R68Q	.	.	.
CECR2	27443	broad.mit.edu	36	22	16411734	16411734	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031413	exon17	c.C4232T	p.S1411F	.	.	.
GSC2	2928	broad.mit.edu	36	22	17516533	17516533	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005315	exon3	c.G589A	p.V197I	.	.	.
CLTCL1	8218	broad.mit.edu	36	22	17590287	17590287	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001835	exon15	c.C2338T	p.R780C	.	.	.
SNAP29	9342	broad.mit.edu	36	22	19543406	19543406	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004782	exon1	c.C8T	p.A3V	.	.	.
CRKL	1399	broad.mit.edu	36	22	19634066	19634066	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005207	exon3	c.G845A	p.R282H	.	.	.
PRAME	23532	broad.mit.edu	36	22	21220514	21220514	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206955	exon6	c.T1505G	p.L502R	.	.	.
PIWIL3	440822	broad.mit.edu	36	22	23450896	23450896	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008496	exon18	c.C2216T	p.A739V	.	.	.
SGSM1	129049	broad.mit.edu	36	22	23638689	23638689	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098497	exon22	c.G2898A	p.T966T	.	.	.
CRYBB1	1414	broad.mit.edu	36	22	25333954	25333954	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001887	exon4	c.G331A	p.G111R	.	.	.
CRYBB1	1414	broad.mit.edu	36	22	25338105	25338105	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001887	exon3	c.C230T	p.S77L	.	.	.
CRYBA4	1413	broad.mit.edu	36	22	25351570	25351570	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001886	exon4	c.G284A	p.R95Q	.	.	.
ASCC2	84164	broad.mit.edu	36	22	28551101	28551101	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032204	exon4	c.G386A	p.R129H	.	.	.
RFPL3	10738	broad.mit.edu	36	22	31086704	31086704	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006604	exon3	c.G752A	p.R251H	.	.	.
LARGE	9215	broad.mit.edu	36	22	32030318	32030318	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133642	exon12	c.G1627A	p.V543M	.	.	.
LARGE	9215	broad.mit.edu	36	22	32376575	32376575	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133642	exon3	c.C186T	p.R62R	.	.	.
HMOX1	3162	broad.mit.edu	36	22	34112824	34112824	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002133	exon3	c.C291T	p.Y97Y	.	.	.
RBFOX2	23543	broad.mit.edu	36	22	34470192	34470192	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014309	exon12	c.C1100T	p.T367M	.	.	.
RBFOX2	23543	broad.mit.edu	36	22	34485972	34485972	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001082579	exon10	c.G1015A	p.A339T	.	.	.
MYH9	4627	broad.mit.edu	36	22	35018016	35018016	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002473	exon31	c.G4306A	p.A1436T	.	.	.
EIF3D	8664	broad.mit.edu	36	22	35249963	35249963	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003753	exon5	c.G317A	p.R106H	.	.	.
MCHR1	2847	broad.mit.edu	36	22	39407123	39407123	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005297	exon2	c.C514T	p.L172F	.	.	.
MCHR1	2847	broad.mit.edu	36	22	39407766	39407766	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005297	exon2	c.C1157T	p.T386M	.	.	.
EP300	2033	broad.mit.edu	36	22	39886654	39886654	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001429	exon20	c.A3653G	p.D1218G	.	.	.
PNPLA5	150379	broad.mit.edu	36	22	42614848	42614848	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138814	exon5	c.G719C	p.C240S	.	.	.
PARVB	29780	broad.mit.edu	36	22	42863692	42863692	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001003828	exon8	c.A752G	p.H251R	.	.	.
FBLN1	2192	broad.mit.edu	36	22	44325147	44325147	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006487	exon14	c.G1685A	p.R562H	.	.	.
GTSE1	51512	broad.mit.edu	36	22	45103279	45103279	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016426	exon10	c.G1755A	p.K585K	.	.	.
TBC1D22A	25771	broad.mit.edu	36	22	45686663	45686663	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014346	exon8	c.G930A	p.A310A	.	.	.
SBF1	6305	broad.mit.edu	36	22	49232519	49232519	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002972	exon41	c.G5600A	p.R1867H	.	.	.
MIOX	55586	broad.mit.edu	36	22	49272704	49272704	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017584	exon2	c.C40T	p.R14X	.	.	.
APOBEC3D	140564	broad.mit.edu	36	22	37751131	37751131	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152426	exon3	c.321delC	p.N107fs	.	.	.
CELSR1	9620	broad.mit.edu	36	22	45309860	45309860	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014246	exon1	c.1872delC	p.P624fs	.	.	.
DNMT1	1786	broad.mit.edu	36	19	10126386	10126386	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130823	exon21	c.G1708C	p.A570P	.	.	.
DNM2	1785	broad.mit.edu	36	19	10800809	10800809	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190716	exon19	c.G2156A	p.R719Q	.	.	.
ZNF433	163059	broad.mit.edu	36	19	11988301	11988301	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080411	exon4	c.T381C	p.T127T	.	.	.
ZNF443	10224	broad.mit.edu	36	19	12402611	12402611	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005815	exon4	c.C1375T	p.R459C	.	.	.
ZNF791	163049	broad.mit.edu	36	19	12599861	12599861	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153358	exon4	c.A518G	p.Q173R	.	.	.
BEST2	54831	broad.mit.edu	36	19	12728087	12728087	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017682	exon8	c.C1081A	p.Q361K	.	.	.
NACC1	112939	broad.mit.edu	36	19	13107460	13107460	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052876	exon2	c.G439A	p.V147M	.	.	.
MUM1	84939	broad.mit.edu	36	19	1311183	1311183	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032853	exon5	c.G266C	p.R89T	.	.	.
MRI1	84245	broad.mit.edu	36	19	13740216	13740216	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032285	exon3	c.C415T	p.Q139X	.	.	.
CC2D1A	54862	broad.mit.edu	36	19	13902080	13902080	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017721	exon28	c.G2813T	p.R938M	.	.	.
ADAMTSL5	339366	broad.mit.edu	36	19	1458271	1458271	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_213604	exon9	c.C822T	p.A274A	.	.	.
CCDC105	126402	broad.mit.edu	36	19	14982859	14982859	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173482	exon1	c.C222T	p.R74R	.	.	.
SYDE1	85360	broad.mit.edu	36	19	15081792	15081792	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033025	exon3	c.G708A	p.P236P	.	.	.
RASAL3	64926	broad.mit.edu	36	19	15426692	15426692	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022904	exon12	c.G1734A	p.A578A	.	.	.
OR10H1	26539	broad.mit.edu	36	19	15779475	15779475	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013940	exon1	c.G373A	p.A125T	.	.	.
HSH2D	84941	broad.mit.edu	36	19	16129144	16129144	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032855	exon8	c.G599A	p.R200H	.	.	.
CHERP	10523	broad.mit.edu	36	19	16504558	16504558	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006387	exon5	c.C525T	p.A175A	.	.	.
NWD1	284434	broad.mit.edu	36	19	16721311	16721311	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007525	exon6	c.G858A	p.T286T	.	.	.
GTPBP3	84705	broad.mit.edu	36	19	17311378	17311378	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032620	exon7	c.A944T	p.E315V	.	.	.
FAM129C	199786	broad.mit.edu	36	19	17518584	17518584	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173544	exon14	c.C1737T	p.C579C	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17620346	17620346	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080421	exon15	c.C1710T	p.C570C	.	.	.
MAP1S	55201	broad.mit.edu	36	19	17705226	17705226	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018174	exon6	c.C3013T	p.R1005C	.	.	.
JAK3	3718	broad.mit.edu	36	19	17806419	17806419	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000215	exon17	c.C2311T	p.R771X	.	.	.
JAK3	3718	broad.mit.edu	36	19	17808985	17808985	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000215	exon13	c.C1739T	p.S580L	.	.	.
PIK3R2	5296	broad.mit.edu	36	19	18134019	18134019	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005027	exon8	c.G909A	p.P303P	.	.	.
CILP2	148113	broad.mit.edu	36	19	19515875	19515875	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153221	exon8	c.C1521T	p.G507G	.	.	.
ZNF98	148198	broad.mit.edu	36	19	22366309	22366309	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098626	exon4	c.G1568A	p.C523Y	.	.	.
ZNF57	126295	broad.mit.edu	36	19	2868536	2868536	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173480	exon4	c.A917C	p.K306T	.	.	.
NFIC	4782	broad.mit.edu	36	19	3332842	3332842	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005597	exon2	c.C163T	p.R55C	.	.	.
CCNE1	898	broad.mit.edu	36	19	35006511	35006511	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_057182	exon10	c.C1175T	p.P392L	.	.	.
ANKRD27	84079	broad.mit.edu	36	19	37823068	37823068	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032139	exon11	c.C968T	p.T323M	.	.	.
EEF2	1938	broad.mit.edu	36	19	3930966	3930966	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001961	exon10	c.C1445T	p.T482M	.	.	.
ZBTB7A	51341	broad.mit.edu	36	19	3998941	3998941	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015898	exon3	c.G1564A	p.A522T	.	.	.
APLP1	333	broad.mit.edu	36	19	41057489	41057489	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024807	exon10	c.C1222T	p.R408C	.	.	.
LRFN3	79414	broad.mit.edu	36	19	41123424	41123424	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024509	exon2	c.G1257T	p.K419N	.	.	.
ZNF382	84911	broad.mit.edu	36	19	41809652	41809652	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032825	exon5	c.C1013T	p.A338V	.	.	.
FSD1	79187	broad.mit.edu	36	19	4257202	4257202	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024333	exon3	c.C119T	p.S40L	.	.	.
RYR1	6261	broad.mit.edu	36	19	43767501	43767501	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042723	exon101	c.G14710A	p.E4904K	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45058265	45058265	+	Silent	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003890	exon30	c.G13809T	p.A4603A	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45060318	45060318	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003890	exon28	c.C12870T	p.P4290P	.	.	.
SPTBN4	57731	broad.mit.edu	36	19	45763231	45763231	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020971	exon28	c.C5978T	p.A1993V	.	.	.
ADCK4	79934	broad.mit.edu	36	19	45889908	45889908	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024876	exon15	c.C1507T	p.R503X	.	.	.
CCDC97	90324	broad.mit.edu	36	19	46514413	46514413	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052848	exon2	c.T331G	p.F111V	.	.	.
CEACAM5	1048	broad.mit.edu	36	19	46916848	46916848	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004363	exon8	c.G1938A	p.T646T	.	.	.
ERF	2077	broad.mit.edu	36	19	47445602	47445602	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006494	exon4	c.T502C	p.S168P	.	.	.
CIC	23152	broad.mit.edu	36	19	47488684	47488684	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015125	exon14	c.C3302T	p.A1101V	.	.	.
MEGF8	1954	broad.mit.edu	36	19	47532162	47532163	+	Missense_Mutation	DNP	CG	TA	TA	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001410	exon6	c.1068_1069TA	.	.	.	.
LIPE	3991	broad.mit.edu	36	19	47606380	47606380	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005357	exon2	c.C1338T	p.D446D	.	.	.
PSG3	5671	broad.mit.edu	36	19	47928959	47928959	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021016	exon3	c.G526A	p.A176T	.	.	.
ZNF283	284349	broad.mit.edu	36	19	49044360	49044360	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181845	exon7	c.T1767C	p.H589H	.	.	.
ZNF233	353355	broad.mit.edu	36	19	49462915	49462915	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181756	exon4	c.C199T	p.R67W	.	.	.
ZFP112	7771	broad.mit.edu	36	19	49524445	49524445	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013380	exon4	c.C1705A	p.H569N	.	.	.
CEACAM20	125931	broad.mit.edu	36	19	49716421	49716421	+	Silent	SNP	C	T	T	rs12982449	by-cluster,by-frequency,by-hapmap,by-1000genomes	TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102597	exon5	c.G957A	p.T319T	.	.	.
CKM	1158	broad.mit.edu	36	19	50513057	50513057	+	Missense_Mutation	SNP	C	T	T	rs1803285	unknown	TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001824	exon3	c.G214A	p.V72M	.	.	.
DMPK	1760	broad.mit.edu	36	19	50972497	50972497	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081563	exon7	c.C1104T	p.F368F	.	.	.
HIF3A	64344	broad.mit.edu	36	19	51516888	51516888	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152795	exon10	c.G1160A	p.R387Q	.	.	.
C5AR1	728	broad.mit.edu	36	19	52515196	52515196	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001736	exon2	c.G321A	p.P107P	.	.	.
LIG1	3978	broad.mit.edu	36	19	53326235	53326235	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000234	exon19	c.C1731T	p.H577H	.	.	.
SYNGR4	23546	broad.mit.edu	36	19	53560939	53560939	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012451	exon2	c.C28T	p.L10L	.	.	.
GRIN2D	2906	broad.mit.edu	36	19	53616994	53616994	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000836	exon10	c.G2232A	p.A744A	.	.	.
HSD17B14	51171	broad.mit.edu	36	19	54026806	54026806	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016246	exon5	c.G300T	p.E100D	.	.	.
PPP1R15A	23645	broad.mit.edu	36	19	54069151	54069151	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014330	exon2	c.A849T	p.E283D	.	.	.
TBC1D17	79735	broad.mit.edu	36	19	55079543	55079543	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168222	exon11	c.T1160C	p.M387T	.	.	.
MYH14	79784	broad.mit.edu	36	19	55467034	55467034	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077186	exon25	c.C3189T	p.D1063D	.	.	.
SYT3	84258	broad.mit.edu	36	19	55827519	55827519	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032298	exon2	c.T510C	p.A170A	.	.	.
SIGLEC9	27180	broad.mit.edu	36	19	56320858	56320858	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198558	exon2	c.A614G	p.Q205R	.	.	.
LONP1	9361	broad.mit.edu	36	19	5643167	5643167	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004793	exon18	c.A2756T	p.D919V	.	.	.
CLDND2	125875	broad.mit.edu	36	19	56563546	56563546	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152353	exon1	c.G98A	p.R33H	.	.	.
OSCAR	126014	broad.mit.edu	36	19	59290887	59290887	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206818	exon5	c.G729A	p.P243P	.	.	.
TFPT	29844	broad.mit.edu	36	19	59303181	59303181	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013342	exon5	c.A606G	p.A202A	.	.	.
LENG8	114823	broad.mit.edu	36	19	59659221	59659221	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052925	exon9	c.G1289A	p.R430H	.	.	.
KIR2DL1	3802	broad.mit.edu	36	19	59978472	59978472	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014218	exon4	c.G414A	p.T138T	.	.	.
NLRP2	55655	broad.mit.edu	36	19	60186480	60186480	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174083	exon7	c.C1533T	p.D511D	.	.	.
SYT5	6861	broad.mit.edu	36	19	60378968	60378968	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003180	exon5	c.C461T	p.P154L	.	.	.
NAT14	57106	broad.mit.edu	36	19	60689759	60689759	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020378	exon3	c.G245A	p.R82Q	.	.	.
NLRP13	126204	broad.mit.edu	36	19	61115208	61115208	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176810	exon5	c.T1787C	p.I596T	.	.	.
NLRP8	126205	broad.mit.edu	36	19	61159041	61159041	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_176811	exon3	c.C1805T	p.P602L	.	.	.
ZNF835	90485	broad.mit.edu	36	19	61866784	61866784	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005850	exon2	c.G1661A	p.R554H	.	.	.
ZNF304	57343	broad.mit.edu	36	19	62560391	62560391	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020657	exon3	c.G1342A	p.V448M	.	.	.
ZNF419	79744	broad.mit.edu	36	19	62694671	62694671	+	Silent	SNP	T	C	C	rs62126198	unknown	TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098494	exon3	c.T96C	p.D32D	.	.	.
SLC25A23	79085	broad.mit.edu	36	19	6405624	6405624	+	Silent	SNP	A	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024103	exon5	c.T588G	p.G196G	.	.	.
C3	718	broad.mit.edu	36	19	6661725	6661725	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000064	exon13	c.G1611A	p.L537L	.	.	.
EMR1	2015	broad.mit.edu	36	19	6848511	6848511	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001974	exon5	c.G467A	p.S156N	.	.	.
ACTL9	284382	broad.mit.edu	36	19	8668853	8668853	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178525	exon1	c.G1199A	p.R400Q	.	.	.
MUC16	94025	broad.mit.edu	36	19	8950904	8950904	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon1	c.C1911T	p.S637S	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110603642	110603642	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177531	exon74	c.C12083T	p.A4028V	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116668652	116668652	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014112	exon5	c.G2451A	p.P817P	.	.	.
ENPP2	5168	broad.mit.edu	36	8	120682837	120682837	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130863	exon10	c.A880G	p.T294A	.	.	.
TAF2	6873	broad.mit.edu	36	8	120864939	120864939	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003184	exon16	c.G1975A	p.V659I	.	.	.
PTK2	5747	broad.mit.edu	36	8	141738760	141738760	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199649	exon33	c.C3185T	p.T1062M	.	.	.
PTK2	5747	broad.mit.edu	36	8	141780200	141780200	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199649	exon26	c.G2471A	p.R824H	.	.	.
SLC45A4	57210	broad.mit.edu	36	8	142307513	142307513	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080431	exon1	c.G35A	p.R12H	.	.	.
LY6E	4061	broad.mit.edu	36	8	144174577	144174577	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002346	exon4	c.C392A	p.P131H	.	.	.
GPAA1	8733	broad.mit.edu	36	8	145211701	145211701	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003801	exon8	c.C1099T	p.R367C	.	.	.
SLC18A1	6570	broad.mit.edu	36	8	20080920	20080920	+	Silent	SNP	G	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003053	exon3	c.C480G	p.L160L	.	.	.
MYOM2	9172	broad.mit.edu	36	8	2034210	2034210	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003970	exon19	c.G2430A	p.M810I	.	.	.
EGR3	1960	broad.mit.edu	36	8	22604638	22604638	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004430	exon2	c.C457A	p.L153I	.	.	.
STC1	6781	broad.mit.edu	36	8	23758369	23758369	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003155	exon4	c.C603A	p.H201Q	.	.	.
ADAM28	10863	broad.mit.edu	36	8	24255095	24255095	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014265	exon16	c.G1710A	p.S570S	.	.	.
DOCK5	80005	broad.mit.edu	36	8	25321459	25321459	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024940	exon49	c.G5137A	p.A1713T	.	.	.
DPYSL2	1808	broad.mit.edu	36	8	26548324	26548324	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001386	exon8	c.C802T	p.R268W	.	.	.
CHRNA2	1135	broad.mit.edu	36	8	27376624	27376624	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000742	exon6	c.A1253T	p.E418V	.	.	.
TEX15	56154	broad.mit.edu	36	8	30820494	30820494	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031271	exon1	c.T5582C	p.M1861T	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36764008	36764008	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031836	exon2	c.T222C	p.A74A	.	.	.
SFRP1	6422	broad.mit.edu	36	8	41285419	41285419	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003012	exon1	c.G417A	p.S139S	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48901827	48901827	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081640	exon63	c.G8725A	p.E2909K	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52483970	52483970	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144651	exon17	c.G2767C	p.G923R	.	.	.
RGS20	8601	broad.mit.edu	36	8	54954406	54954406	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170587	exon2	c.C201T	p.A67A	.	.	.
RP1	6101	broad.mit.edu	36	8	55703323	55703323	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006269	exon4	c.G4328A	p.R1443Q	.	.	.
CHD7	55636	broad.mit.edu	36	8	61817676	61817676	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017780	exon2	c.C1131T	p.N377N	.	.	.
SGK223	157285	broad.mit.edu	36	8	8271191	8271191	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080826	exon2	c.C2138A	p.P713H	.	.	.
SLC35A3	23443	broad.mit.edu	36	1	100231829	100231829	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012243	exon2	c.T131C	p.V44A	.	.	.
KIF1B	23095	broad.mit.edu	36	1	10317232	10317232	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015074	exon26	c.G2854C	p.E952Q	.	.	.
KIF1B	23095	broad.mit.edu	36	1	10357676	10357676	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015074	exon45	c.G5136A	p.Q1712Q	.	.	.
CASZ1	54897	broad.mit.edu	36	1	10647999	10647999	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079843	exon5	c.G233A	p.R78H	.	.	.
KIAA1324	57535	broad.mit.edu	36	1	109544970	109544970	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020775	exon21	c.C2898T	p.G966G	.	.	.
MASP2	10747	broad.mit.edu	36	1	11010139	11010139	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006610	exon11	c.C1451T	p.A484V	.	.	.
RBM15	64783	broad.mit.edu	36	1	110686213	110686213	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022768	exon1	c.T2663A	p.L888H	.	.	.
KCNA10	3744	broad.mit.edu	36	1	110862674	110862674	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005549	exon1	c.C259T	p.R87W	.	.	.
KCNA2	3737	broad.mit.edu	36	1	110947744	110947744	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004974	exon2	c.C1184T	p.A395V	.	.	.
ADORA3	140	broad.mit.edu	36	1	111832937	111832937	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081976	exon3	c.G447A	p.T149T	.	.	.
KCND3	3752	broad.mit.edu	36	1	112325796	112325796	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004980	exon2	c.G1076A	p.W359X	.	.	.
MTOR	2475	broad.mit.edu	36	1	11241896	11241896	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004958	exon2	c.G158A	p.R53Q	.	.	.
BCL2L15	440603	broad.mit.edu	36	1	114231463	114231463	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010922	exon1	c.A58G	p.M20V	.	.	.
CD101	9398	broad.mit.edu	36	1	117362692	117362692	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004258	exon6	c.C2004T	p.A668A	.	.	.
CLCN6	1185	broad.mit.edu	36	1	11818718	11818718	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001286	exon18	c.C1901T	p.P634L	.	.	.
NPPB	4879	broad.mit.edu	36	1	11840994	11840994	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002521	exon2	c.C252T	p.T84T	.	.	.
ADAM30	11085	broad.mit.edu	36	1	120238144	120238144	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021794	exon1	c.C2339T	p.P780L	.	.	.
NOTCH2	4853	broad.mit.edu	36	1	120307724	120307724	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024408	exon11	c.G1911A	p.T637T	.	.	.
GABPB2	126626	broad.mit.edu	36	1	149346169	149346169	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144618	exon7	c.G769A	p.V257I	.	.	.
SCNM1	79005	broad.mit.edu	36	1	149408141	149408141	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024041	exon7	c.T649C	p.F217L	.	.	.
THEM4	117145	broad.mit.edu	36	1	150134218	150134218	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053055	exon2	c.T176G	p.L59R	.	.	.
FLG	2312	broad.mit.edu	36	1	150544655	150544655	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002016	exon3	c.C9331T	p.R3111C	.	.	.
FLG2	388698	broad.mit.edu	36	1	150594037	150594037	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014342	exon3	c.A2849G	p.Q950R	.	.	.
KPRP	448834	broad.mit.edu	36	1	150999780	150999780	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025231	exon2	c.C1092T	p.G364G	.	.	.
IVL	3713	broad.mit.edu	36	1	151150156	151150156	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005547	exon2	c.T1259G	p.V420G	.	.	.
HAX1	10456	broad.mit.edu	36	1	152514747	152514747	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018837	exon7	c.T642C	p.D214D	.	.	.
ADAR	103	broad.mit.edu	36	1	152841067	152841067	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015841	exon2	c.G675A	p.P225P	.	.	.
C1orf104	284618	broad.mit.edu	36	1	153557858	153557858	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039517	exon2	c.G46A	p.E16K	.	.	.
GON4L	54856	broad.mit.edu	36	1	154003022	154003022	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032292	exon21	c.C2866A	p.L956I	.	.	.
ARHGEF2	9181	broad.mit.edu	36	1	154186879	154186879	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001162383	exon21	c.C2722T	p.R908C	.	.	.
CASP9	842	broad.mit.edu	36	1	15706033	15706033	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032996	exon4	c.G329A	p.R110H	.	.	.
OR10J1	26476	broad.mit.edu	36	1	157677044	157677044	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012351	exon1	c.T872C	p.I291T	.	.	.
PVRL4	81607	broad.mit.edu	36	1	159313989	159313989	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030916	exon3	c.C608T	p.A203V	.	.	.
B4GALT3	8703	broad.mit.edu	36	1	159410318	159410318	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199874	exon5	c.G635A	p.R212Q	.	.	.
DDR2	4921	broad.mit.edu	36	1	160991100	160991100	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001014796	exon6	c.T248G	p.L83R	.	.	.
POU2F1	5451	broad.mit.edu	36	1	165651638	165651638	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002697	exon16	c.G2268A	p.A756A	.	.	.
F5	2153	broad.mit.edu	36	1	167776642	167776642	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000130	exon13	c.C4310T	p.T1437I	.	.	.
MYOC	4653	broad.mit.edu	36	1	169872290	169872290	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000261	exon3	c.A913G	p.S305G	.	.	.
METTL13	51603	broad.mit.edu	36	1	170032386	170032386	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014955	exon8	c.C1709T	p.P570L	.	.	.
TNN	63923	broad.mit.edu	36	1	173334158	173334158	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022093	exon9	c.C1923A	p.D641E	.	.	.
RFWD2	64326	broad.mit.edu	36	1	174279489	174279489	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022457	exon13	c.C1510T	p.Q504X	.	.	.
FAM5B	57795	broad.mit.edu	36	1	175517059	175517059	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021165	exon8	c.T2124C	p.Y708Y	.	.	.
FAM163A	148753	broad.mit.edu	36	1	178049547	178049547	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173509	exon5	c.G104A	p.C35Y	.	.	.
PQLC2	54896	broad.mit.edu	36	1	19516864	19516864	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017765	exon3	c.G106A	p.E36K	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196964200	196964200	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080921	exon13	c.G1340A	p.C447Y	.	.	.
CAMSAP1L1	23271	broad.mit.edu	36	1	199083017	199083017	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203459	exon9	c.G1166A	p.R389H	.	.	.
CACNA1S	779	broad.mit.edu	36	1	199327855	199327855	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000069	exon4	c.G409A	p.V137M	.	.	.
ARL8A	127829	broad.mit.edu	36	1	200374151	200374151	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138795	exon2	c.C172T	p.R58C	.	.	.
KDM5B	10765	broad.mit.edu	36	1	200969303	200969303	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006618	exon23	c.G3758A	p.R1253Q	.	.	.
PPFIA4	8497	broad.mit.edu	36	1	201296132	201296132	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015053	exon9	c.A1230G	p.S410S	.	.	.
CHI3L1	1116	broad.mit.edu	36	1	201416386	201416386	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001276	exon8	c.C729T	p.Y243Y	.	.	.
NUAK2	81788	broad.mit.edu	36	1	203539383	203539383	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030952	exon7	c.C1705T	p.R569W	.	.	.
RAB7L1	8934	broad.mit.edu	36	1	204007366	204007366	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135662	exon4	c.C235T	p.R79W	.	.	.
PM20D1	148811	broad.mit.edu	36	1	204079442	204079442	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152491	exon6	c.G803A	p.G268D	.	.	.
DYRK3	8444	broad.mit.edu	36	1	204888425	204888425	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003582	exon3	c.G1259A	p.C420Y	.	.	.
MAPKAPK2	9261	broad.mit.edu	36	1	204968758	204968758	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032960	exon2	c.C360T	p.I120I	.	.	.
CD55	1604	broad.mit.edu	36	1	205571118	205571118	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000574	exon6	c.T707A	p.I236N	.	.	.
DDOST	1650	broad.mit.edu	36	1	20851498	20851498	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005216	exon11	c.C1332T	p.I444I	.	.	.
RCOR3	55758	broad.mit.edu	36	1	209553411	209553411	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136223	exon12	c.G1340A	p.R447Q	.	.	.
CENPF	1063	broad.mit.edu	36	1	212895296	212895296	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016343	exon17	c.G8412A	p.Q2804Q	.	.	.
USH2A	7399	broad.mit.edu	36	1	214174713	214174713	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206933	exon38	c.G7168A	p.G2390R	.	.	.
USH2A	7399	broad.mit.edu	36	1	214662006	214662006	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206933	exon2	c.C296T	p.A99V	.	.	.
HSPG2	3339	broad.mit.edu	36	1	22052007	22052007	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005529	exon51	c.C6583T	p.R2195W	.	.	.
HSPG2	3339	broad.mit.edu	36	1	22075433	22075433	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005529	exon23	c.G2879A	p.S960N	.	.	.
WDR26	80232	broad.mit.edu	36	1	222658852	222658852	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025160	exon8	c.C1202T	p.A401V	.	.	.
ACBD3	64746	broad.mit.edu	36	1	224420279	224420279	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022735	exon2	c.A332G	p.K111R	.	.	.
AGT	183	broad.mit.edu	36	1	228912913	228912913	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000029	exon2	c.G307A	p.A103T	.	.	.
DISC1	27185	broad.mit.edu	36	1	230239186	230239186	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164540	exon11	c.G2185A	p.E729K	.	.	.
C1orf31	388753	broad.mit.edu	36	1	232576692	232576692	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012985	exon2	c.C216T	p.N72N	.	.	.
LYST	1130	broad.mit.edu	36	1	234017141	234017141	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000081	exon14	c.T4844C	p.I1615T	.	.	.
KMO	8564	broad.mit.edu	36	1	239792118	239792118	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003679	exon7	c.T478C	p.C160R	.	.	.
OPN3	23596	broad.mit.edu	36	1	239834452	239834452	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014322	exon2	c.C426T	p.R142R	.	.	.
GALE	2582	broad.mit.edu	36	1	23997293	23997293	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000403	exon5	c.G252A	p.A84A	.	.	.
SRSF10	10772	broad.mit.edu	36	1	24174141	24174141	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001191007	exon3	c.C184T	p.R62C	.	.	.
ZNF238	10472	broad.mit.edu	36	1	242284186	242284186	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006352	exon1	c.G460A	p.D154N	.	.	.
ZNF238	10472	broad.mit.edu	36	1	242284822	242284822	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006352	exon1	c.G1096A	p.A366T	.	.	.
TRIM58	25893	broad.mit.edu	36	1	246106107	246106107	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015431	exon6	c.G1154T	p.W385L	.	.	.
OR2M5	127059	broad.mit.edu	36	1	246375599	246375599	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004690	exon1	c.A527G	p.H176R	.	.	.
OR2T6	254879	broad.mit.edu	36	1	246617983	246617983	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005471	exon1	c.G451A	p.G151S	.	.	.
NIPAL3	57185	broad.mit.edu	36	1	24668079	24668079	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020448	exon12	c.C1038T	p.H346H	.	.	.
SRRM1	10250	broad.mit.edu	36	1	24850518	24850518	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005839	exon6	c.C553T	p.R185X	.	.	.
RHCE	6006	broad.mit.edu	36	1	25584851	25584851	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138617	exon5	c.G696A	p.L232L	.	.	.
C1orf172	126695	broad.mit.edu	36	1	27150511	27150511	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152365	exon2	c.G948A	p.S316S	.	.	.
MAP3K6	9064	broad.mit.edu	36	1	27557395	27557395	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004672	exon21	c.G2779A	p.A927T	.	.	.
EYA3	2140	broad.mit.edu	36	1	28238002	28238002	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001990	exon5	c.T159C	p.I53I	.	.	.
SERINC2	347735	broad.mit.edu	36	1	31670195	31670195	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199039	exon4	c.T115C	p.Y39H	.	.	.
TRIM62	55223	broad.mit.edu	36	1	33385874	33385874	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018207	exon5	c.C919T	p.R307C	.	.	.
SFPQ	6421	broad.mit.edu	36	1	35427521	35427521	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005066	exon5	c.G1465A	p.E489K	.	.	.
KIAA0319L	79932	broad.mit.edu	36	1	35688589	35688589	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024874	exon14	c.T2171C	p.V724A	.	.	.
SCMH1	22955	broad.mit.edu	36	1	41266892	41266892	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172218	exon15	c.G1559A	p.R520Q	.	.	.
HIVEP3	59269	broad.mit.edu	36	1	41763131	41763131	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024503	exon6	c.C5245T	p.R1749C	.	.	.
FAM183A	440585	broad.mit.edu	36	1	43386287	43386287	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001101376	exon1	c.G78T	p.K26N	.	.	.
MED8	112950	broad.mit.edu	36	1	43624366	43624366	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052877	exon6	c.G612T	p.Q204H	.	.	.
KIAA0467	23334	broad.mit.edu	36	1	43675677	43675677	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015284	exon29	c.G3504A	p.L1168L	.	.	.
PTPRF	5792	broad.mit.edu	36	1	43837012	43837012	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130440	exon13	c.G2154T	p.E718D	.	.	.
KDM4A	9682	broad.mit.edu	36	1	43936163	43936163	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014663	exon19	c.C2733T	p.N911N	.	.	.
HECTD3	79654	broad.mit.edu	36	1	45242152	45242152	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024602	exon19	c.C2391T	p.R797R	.	.	.
POMGNT1	55624	broad.mit.edu	36	1	46432617	46432617	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017739	exon9	c.C795T	p.R265R	.	.	.
ACOT7	11332	broad.mit.edu	36	1	6263817	6263817	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181864	exon8	c.G976A	p.A326T	.	.	.
PGM1	5236	broad.mit.edu	36	1	63867774	63867774	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172818	exon2	c.A391G	p.I131V	.	.	.
ZBTB48	3104	broad.mit.edu	36	1	6569394	6569394	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005341	exon5	c.G1097A	p.R366Q	.	.	.
ASB17	127247	broad.mit.edu	36	1	76170175	76170175	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080868	exon1	c.A390G	p.A130A	.	.	.
ELTD1	64123	broad.mit.edu	36	1	79129914	79129914	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022159	exon14	c.G1893T	p.W631C	.	.	.
GTF2B	2959	broad.mit.edu	36	1	89095747	89095747	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001514	exon6	c.G547A	p.V183I	.	.	.
H6PD	9563	broad.mit.edu	36	1	9244743	9244743	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004285	exon4	c.G784A	p.D262N	.	.	.
DNTTIP2	30836	broad.mit.edu	36	1	94115805	94115805	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014597	exon2	c.T274C	p.S92P	.	.	.
LPPR4	9890	broad.mit.edu	36	1	99502813	99502813	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014839	exon1	c.G220A	p.E74K	.	.	.
CEPT1	10390	broad.mit.edu	36	1	111505359	111505359	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006090	exon4	c.547delT	p.F183fs	.	.	.
PPP1R12B	4660	broad.mit.edu	36	1	200673813	200673813	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167857	exon10	c.1496delT	p.V499fs	.	.	.
UBXN11	91544	broad.mit.edu	36	1	26481477	26481478	+	Frame_Shift_Del	DEL	CC	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077262	exon11	c.1102_1103del	p.368_368del	.	.	.
UBXN11	91544	broad.mit.edu	36	1	26481480	26481483	+	Frame_Shift_Del	DEL	GGAC	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077262	exon11	c.1097_1100del	p.366_367del	.	.	.
TESK2	10420	broad.mit.edu	36	1	45695855	45695855	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007170	exon2	c.190delA	p.I64X	.	.	.
CLSTN1	22883	broad.mit.edu	36	1	9732546	9732546	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014944	exon5	c.632delA	p.N211fs	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102510290	102510290	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001377	exon15	c.C2137T	p.R713W	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102564571	102564571	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001377	exon44	c.C7276T	p.R2426C	.	.	.
PDGFD	80310	broad.mit.edu	36	11	103303032	103303032	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033135	exon6	c.C787T	p.R263C	.	.	.
DDI1	414301	broad.mit.edu	36	11	103412941	103412941	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001711	exon1	c.C181A	p.L61M	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105302778	105302778	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077243	exon13	c.G1949A	p.R650Q	.	.	.
CUL5	8065	broad.mit.edu	36	11	107430884	107430884	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003478	exon7	c.G772A	p.V258I	.	.	.
EXPH5	23086	broad.mit.edu	36	11	107886165	107886165	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015065	exon6	c.C5279A	p.P1760H	.	.	.
NCAM1	4684	broad.mit.edu	36	11	112611085	112611085	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001076682	exon13	c.C1785T	p.D595D	.	.	.
SIDT2	51092	broad.mit.edu	36	11	116571737	116571737	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040455	exon25	c.G2332A	p.A778T	.	.	.
TREH	11181	broad.mit.edu	36	11	118038849	118038849	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007180	exon4	c.G374A	p.R125H	.	.	.
HYOU1	10525	broad.mit.edu	36	11	118421540	118421540	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006389	exon26	c.G2975A	p.R992Q	.	.	.
ABCG4	64137	broad.mit.edu	36	11	118525964	118525964	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142505	exon2	c.G79A	p.G27R	.	.	.
HSPA8	3312	broad.mit.edu	36	11	122437061	122437061	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153201	exon2	c.T182C	p.M61T	.	.	.
TIRAP	114609	broad.mit.edu	36	11	125667670	125667670	+	Silent	SNP	A	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039661	exon5	c.A156T	p.S52S	.	.	.
TIRAP	114609	broad.mit.edu	36	11	125667755	125667755	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039661	exon5	c.C241T	p.R81C	.	.	.
ST3GAL4	6484	broad.mit.edu	36	11	125783237	125783237	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006278	exon7	c.C363T	p.N121N	.	.	.
PIK3C2A	5286	broad.mit.edu	36	11	17147269	17147269	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002645	exon1	c.C596A	p.P199H	.	.	.
ABCC8	6833	broad.mit.edu	36	11	17371248	17371248	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000352	exon39	c.C4612T	p.R1538X	.	.	.
KCNC1	3746	broad.mit.edu	36	11	17749916	17749916	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004976	exon2	c.G699A	p.V233V	.	.	.
ATHL1	80162	broad.mit.edu	36	11	282614	282614	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025092	exon6	c.C1095T	p.V365V	.	.	.
DNAJC24	120526	broad.mit.edu	36	11	31408457	31408457	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181706	exon5	c.C383A	p.A128E	.	.	.
RAG1	5896	broad.mit.edu	36	11	36551555	36551555	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000448	exon2	c.C125A	p.P42H	.	.	.
LRRC4C	57689	broad.mit.edu	36	11	40093010	40093010	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020929	exon2	c.G1409A	p.R470Q	.	.	.
ACCS	84680	broad.mit.edu	36	11	44061568	44061568	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032592	exon14	c.T1273G	p.F425V	.	.	.
MAPK8IP1	9479	broad.mit.edu	36	11	45883305	45883305	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005456	exon11	c.C1992T	p.P664P	.	.	.
CKAP5	9793	broad.mit.edu	36	11	46731499	46731499	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008938	exon37	c.T4994C	p.I1665T	.	.	.
NR1H3	10062	broad.mit.edu	36	11	47246736	47246736	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130102	exon9	c.C1122T	p.S374S	.	.	.
MADD	8567	broad.mit.edu	36	11	47268831	47268831	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003682	exon20	c.G3249T	p.M1083I	.	.	.
PTPRJ	5795	broad.mit.edu	36	11	48114239	48114239	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002843	exon9	c.C1688T	p.P563L	.	.	.
OR51G1	79324	broad.mit.edu	36	11	4901999	4901999	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005237	exon1	c.C147T	p.H49H	.	.	.
OR51A4	401666	broad.mit.edu	36	11	4924731	4924731	+	Missense_Mutation	SNP	T	C	C	rs1817206	by-frequency,by-submitter,by-hapmap	TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005329	exon1	c.A176G	p.E59G	.	.	.
SMTNL1	219537	broad.mit.edu	36	11	57067122	57067122	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105565	exon1	c.C431T	p.A144V	.	.	.
ZDHHC5	25921	broad.mit.edu	36	11	57222857	57222857	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015457	exon11	c.G1373T	p.S458I	.	.	.
OR52N4	390072	broad.mit.edu	36	11	5732947	5732947	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005175	exon1	c.A401T	p.Y134F	.	.	.
OR52N5	390075	broad.mit.edu	36	11	5755740	5755740	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001922	exon1	c.C701T	p.A234V	.	.	.
MRPL16	54948	broad.mit.edu	36	11	59330401	59330401	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017840	exon4	c.G751A	p.V251M	.	.	.
MS4A10	341116	broad.mit.edu	36	11	60318081	60318081	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206893	exon5	c.G421A	p.V141I	.	.	.
CDHR5	53841	broad.mit.edu	36	11	607483	607483	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031264	exon14	c.C1824T	p.D608D	.	.	.
NXF1	10482	broad.mit.edu	36	11	62325442	62325442	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006362	exon8	c.G733A	p.V245I	.	.	.
WDR74	54663	broad.mit.edu	36	11	62360027	62360027	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018093	exon5	c.G351A	p.K117K	.	.	.
CHRM1	1128	broad.mit.edu	36	11	62434998	62434998	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000738	exon2	c.A151G	p.K51E	.	.	.
SLC22A25	387601	broad.mit.edu	36	11	62741717	62741717	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199352	exon3	c.C573T	p.A191A	.	.	.
SLC22A10	387775	broad.mit.edu	36	11	62814356	62814356	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039752	exon1	c.G143A	p.R48H	.	.	.
MARK2	2011	broad.mit.edu	36	11	63426334	63426334	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017490	exon12	c.G1091A	p.R364H	.	.	.
PLCB3	5331	broad.mit.edu	36	11	63786474	63786474	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184883	exon16	c.C1857T	p.N619N	.	.	.
CDC42BPG	55561	broad.mit.edu	36	11	64351389	64351389	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017525	exon33	c.G4208A	p.R1403H	.	.	.
ATG2A	23130	broad.mit.edu	36	11	64427646	64427646	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015104	exon25	c.T3527A	p.L1176Q	.	.	.
PPP2R5B	5526	broad.mit.edu	36	11	64452181	64452181	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006244	exon5	c.A566G	p.Y189C	.	.	.
BATF2	116071	broad.mit.edu	36	11	64513301	64513301	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138456	exon3	c.G701A	p.R234H	.	.	.
MUS81	80198	broad.mit.edu	36	11	65389073	65389073	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025128	exon13	c.C1282A	p.L428I	.	.	.
DCHS1	8642	broad.mit.edu	36	11	6607700	6607700	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003737	exon11	c.G4814T	p.R1605L	.	.	.
ACTN3	89	broad.mit.edu	36	11	66083374	66083374	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001104	exon12	c.C1368T	p.S456S	.	.	.
C11orf80	79703	broad.mit.edu	36	11	66312212	66312212	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024650	exon5	c.C529T	p.Q177X	.	.	.
RCE1	9986	broad.mit.edu	36	11	66369971	66369971	+	Silent	SNP	C	T	T	rs11538048	unknown	TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005133	exon8	c.C819T	p.C273C	.	.	.
RPS6KB2	6199	broad.mit.edu	36	11	66957055	66957055	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003952	exon8	c.G673A	p.V225I	.	.	.
TCIRG1	10312	broad.mit.edu	36	11	67571559	67571559	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006019	exon11	c.G1249A	p.A417T	.	.	.
LRP5	4041	broad.mit.edu	36	11	67933981	67933981	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002335	exon10	c.C2115T	p.N705N	.	.	.
FOLR1	2348	broad.mit.edu	36	11	71584087	71584087	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016724	exon4	c.G293A	p.R98Q	.	.	.
GDPD5	81544	broad.mit.edu	36	11	74831085	74831085	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030792	exon12	c.G1138A	p.V380M	.	.	.
C11orf82	220042	broad.mit.edu	36	11	82320764	82320764	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145018	exon6	c.A736G	p.T246A	.	.	.
CTSC	1075	broad.mit.edu	36	11	87707780	87707780	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114173	exon2	c.T291C	p.N97N	.	.	.
WEE1	7465	broad.mit.edu	36	11	9564652	9564652	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143976	exon9	c.G909A	p.P303P	.	.	.
NUP98	4928	broad.mit.edu	36	11	3759889	3759889	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005387	exon2	c.35delG	p.G12fs	.	.	.
CDHR5	53841	broad.mit.edu	36	11	608999	608999	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021924	exon13	c.1560delG	p.G520fs	.	.	.
VEGFB	7423	broad.mit.edu	36	11	63761239	63761239	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003377	exon5	c.379delA	p.K127fs	.	.	.
TFAP2A	7020	broad.mit.edu	36	6	10508767	10508767	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003220	exon6	c.G925A	p.E309K	.	.	.
POPDC3	64208	broad.mit.edu	36	6	105716145	105716145	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022361	exon2	c.G333A	p.L111L	.	.	.
PREP	5550	broad.mit.edu	36	6	105832805	105832805	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002726	exon15	c.C2040T	p.H680H	.	.	.
GCNT2	2651	broad.mit.edu	36	6	10694548	10694548	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145655	exon1	c.T340C	p.F114L	.	.	.
SCML4	256380	broad.mit.edu	36	6	108148767	108148767	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198081	exon6	c.G806A	p.C269Y	.	.	.
SEC63	11231	broad.mit.edu	36	6	108336824	108336824	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007214	exon8	c.C733T	p.R245C	.	.	.
REV3L	5980	broad.mit.edu	36	6	111741262	111741262	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002912	exon28	c.C8590A	p.P2864T	.	.	.
NEDD9	4739	broad.mit.edu	36	6	11299142	11299142	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006403	exon5	c.G946A	p.A316T	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127838842	127838842	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012279	exon6	c.G2022A	p.T674T	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127877877	127877877	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012279	exon3	c.C1110T	p.I370I	.	.	.
THEMIS	387357	broad.mit.edu	36	6	128082652	128082652	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010923	exon5	c.G1768A	p.V590I	.	.	.
ARHGAP18	93663	broad.mit.edu	36	6	129970811	129970811	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033515	exon9	c.G1202A	p.S401N	.	.	.
C6orf192	116843	broad.mit.edu	36	6	133133116	133133116	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052831	exon14	c.C1357T	p.P453S	.	.	.
FAM54A	113115	broad.mit.edu	36	6	136602297	136602297	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138419	exon6	c.G869A	p.R290Q	.	.	.
IFNGR1	3459	broad.mit.edu	36	6	137561210	137561210	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000416	exon7	c.T1121G	p.I374R	.	.	.
HECA	51696	broad.mit.edu	36	6	139529966	139529966	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016217	exon2	c.G1124A	p.G375D	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143136971	143136971	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006734	exon5	c.A598G	p.K200E	.	.	.
UTRN	7402	broad.mit.edu	36	6	144784765	144784765	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007124	exon3	c.T200C	p.L67S	.	.	.
LATS1	9113	broad.mit.edu	36	6	150043167	150043167	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004690	exon5	c.A2130G	p.T710T	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159575339	159575339	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032532	exon11	c.G3805A	p.V1269M	.	.	.
SLC22A3	6581	broad.mit.edu	36	6	160792065	160792065	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021977	exon11	c.G1658A	p.R553H	.	.	.
ATXN1	6310	broad.mit.edu	36	6	16435971	16435971	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000332	exon8	c.A550G	p.M184V	.	.	.
UNC93A	54346	broad.mit.edu	36	6	167641354	167641354	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143947	exon6	c.C948T	p.G316G	.	.	.
TTLL2	83887	broad.mit.edu	36	6	167673986	167673986	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031949	exon3	c.G608A	p.G203D	.	.	.
CDKAL1	54901	broad.mit.edu	36	6	20654668	20654668	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017774	exon3	c.G108A	p.P36P	.	.	.
NRSN1	140767	broad.mit.edu	36	6	24242667	24242667	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080723	exon3	c.G133T	p.E45X	.	.	.
SLC17A4	10050	broad.mit.edu	36	6	25870222	25870222	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005495	exon2	c.G53A	p.G18D	.	.	.
SLC17A3	10786	broad.mit.edu	36	6	25953678	25953678	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098486	exon12	c.G1408A	p.V470I	.	.	.
HIST1H4G	8369	broad.mit.edu	36	6	26355142	26355142	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003547	exon1	c.G43A	p.G15S	.	.	.
OR2J3	442186	broad.mit.edu	36	6	29188318	29188318	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005216	exon1	c.C672T	p.I224I	.	.	.
GABBR1	2550	broad.mit.edu	36	6	29679417	29679417	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021904	exon22	c.G2582A	p.R861H	.	.	.
HLA-F	3134	broad.mit.edu	36	6	29800178	29800178	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018950	exon3	c.A584G	p.N195S	.	.	.
TRIM40	135644	broad.mit.edu	36	6	30223527	30223527	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138700	exon5	c.G649A	p.G217R	.	.	.
TRIM15	89870	broad.mit.edu	36	6	30247733	30247733	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033229	exon7	c.G1026A	p.P342P	.	.	.
TRIM39	56658	broad.mit.edu	36	6	30405377	30405377	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199119	exon1	c.C304T	p.R102W	.	.	.
BPHL	670	broad.mit.edu	36	6	3082599	3082599	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004332	exon5	c.C537T	p.I179I	.	.	.
POU5F1	5460	broad.mit.edu	36	6	31246302	31246302	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002701	exon1	c.G75A	p.P25P	.	.	.
TNXB	7148	broad.mit.edu	36	6	32125300	32125300	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019105	exon28	c.C9476T	p.P3159L	.	.	.
TAP2	6891	broad.mit.edu	36	6	32906057	32906057	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018833	exon9	c.A1600G	p.I534V	.	.	.
PSMB9	5698	broad.mit.edu	36	6	32933056	32933056	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002800	exon3	c.C167T	p.P56L	.	.	.
VPS52	6293	broad.mit.edu	36	6	33326676	33326676	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022553	exon20	c.C2092T	p.R698X	.	.	.
PPARD	5467	broad.mit.edu	36	6	35501591	35501591	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171818	exon9	c.G1083A	p.R361R	.	.	.
ZFAND3	60685	broad.mit.edu	36	6	38137378	38137378	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021943	exon3	c.C144T	p.S48S	.	.	.
GLP1R	2740	broad.mit.edu	36	6	39132215	39132215	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002062	exon2	c.G143A	p.R48H	.	.	.
PRICKLE4	29964	broad.mit.edu	36	6	41862767	41862767	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013397	exon8	c.T1077C	p.L359L	.	.	.
SLC22A7	10864	broad.mit.edu	36	6	43377317	43377317	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006672	exon6	c.G964A	p.A322T	.	.	.
CAPN11	11131	broad.mit.edu	36	6	44252707	44252707	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007058	exon11	c.C1231A	p.H411N	.	.	.
SLC35B2	347734	broad.mit.edu	36	6	44331024	44331024	+	Silent	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178148	exon4	c.G696T	p.R232R	.	.	.
GCLC	2729	broad.mit.edu	36	6	53482006	53482006	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001498	exon7	c.T755C	p.V252A	.	.	.
SSR1	6745	broad.mit.edu	36	6	7255175	7255175	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003144	exon2	c.G166C	p.V56L	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75912613	75912613	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004370	exon24	c.G4485A	p.Q1495Q	.	.	.
MYO6	4646	broad.mit.edu	36	6	76595032	76595032	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004999	exon4	c.T243C	p.Y81Y	.	.	.
CYB5R4	51167	broad.mit.edu	36	6	84707006	84707006	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016230	exon14	c.G1313A	p.S438N	.	.	.
TBX18	9096	broad.mit.edu	36	6	85514429	85514429	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080508	exon5	c.C867T	p.S289S	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88021648	88021648	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015021	exon8	c.G1582T	p.G528X	.	.	.
MDN1	23195	broad.mit.edu	36	6	90444124	90444124	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014611	exon76	c.G12425A	p.R4142H	.	.	.
MDN1	23195	broad.mit.edu	36	6	90520594	90520594	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014611	exon21	c.C2893T	p.R965W	.	.	.
C6orf15	29113	broad.mit.edu	36	6	31187246	31187246	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014070	exon2	c.869delC	p.P290fs	.	.	.
LRFN2	57497	broad.mit.edu	36	6	40507655	40507655	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020737	exon2	c.1176delC	p.P392fs	.	.	.
MYH4	4622	broad.mit.edu	36	17	10287486	10287486	+	Silent	SNP	A	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017533	exon40	c.T5751G	p.A1917A	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11738483	11738483	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004662	exon5	c.C287T	p.T96M	.	.	.
INPP5K	51763	broad.mit.edu	36	17	1348156	1348156	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016532	exon8	c.C787T	p.R263C	.	.	.
INPP5K	51763	broad.mit.edu	36	17	1363987	1363987	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016532	exon2	c.G81A	p.A27A	.	.	.
SLC43A2	124935	broad.mit.edu	36	17	1426729	1426729	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152346	exon13	c.T1460A	p.L487Q	.	.	.
PIGL	9487	broad.mit.edu	36	17	16157651	16157651	+	Silent	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004278	exon4	c.G492T	p.V164V	.	.	.
ZNF287	57336	broad.mit.edu	36	17	16396032	16396032	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020653	exon6	c.A2149G	p.T717A	.	.	.
ZNF624	57547	broad.mit.edu	36	17	16467943	16467943	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020787	exon6	c.G982T	p.G328X	.	.	.
FLCN	201163	broad.mit.edu	36	17	17066568	17066568	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144997	exon7	c.T751A	p.W251R	.	.	.
RPA1	6117	broad.mit.edu	36	17	1738837	1738837	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002945	exon14	c.A1493G	p.Y498C	.	.	.
MYO15A	51168	broad.mit.edu	36	17	17962845	17962845	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016239	exon2	c.G6A	p.A2A	.	.	.
FAM83G	644815	broad.mit.edu	36	17	18847839	18847839	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039999	exon2	c.C241A	p.P81T	.	.	.
KSR1	8844	broad.mit.edu	36	17	22933843	22933843	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014238	exon5	c.C154T	p.R52W	.	.	.
SDF2	6388	broad.mit.edu	36	17	24000417	24000417	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006923	exon3	c.T353C	p.V118A	.	.	.
SLFN11	91607	broad.mit.edu	36	17	30704190	30704190	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001104589	exon6	c.C2004T	p.D668D	.	.	.
C17orf66	256957	broad.mit.edu	36	17	31206447	31206447	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152781	exon15	c.T1446C	p.Y482Y	.	.	.
TRPV3	162514	broad.mit.edu	36	17	3404803	3404803	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145068	exon2	c.C92T	p.P31L	.	.	.
RPL23	9349	broad.mit.edu	36	17	34260202	34260202	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000978	exon4	c.C279T	p.G93G	.	.	.
KRT24	192666	broad.mit.edu	36	17	36110989	36110989	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019016	exon3	c.C784T	p.R262C	.	.	.
KRTAP9-4	85280	broad.mit.edu	36	17	36659687	36659687	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033191	exon1	c.G189A	p.Q63Q	.	.	.
KRT13	3860	broad.mit.edu	36	17	36912796	36912796	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153490	exon4	c.C816T	p.R272R	.	.	.
WNK4	65266	broad.mit.edu	36	17	38189498	38189498	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032387	exon3	c.G809A	p.R270Q	.	.	.
ZZEF1	23140	broad.mit.edu	36	17	3864145	3864145	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015113	exon51	c.C8401T	p.R2801W	.	.	.
TMEM101	84336	broad.mit.edu	36	17	39444912	39444912	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032376	exon4	c.G684A	p.T228T	.	.	.
GRN	2896	broad.mit.edu	36	17	39783616	39783616	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002087	exon7	c.C630T	p.D210D	.	.	.
ANKFY1	51479	broad.mit.edu	36	17	4029829	4029829	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016376	exon17	c.C2336T	p.A779V	.	.	.
ARHGAP27	201176	broad.mit.edu	36	17	40828657	40828657	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199282	exon17	c.A1595C	p.Q532P	.	.	.
HOXB3	3213	broad.mit.edu	36	17	43984579	43984579	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002146	exon3	c.C257T	p.P86L	.	.	.
SPOP	8405	broad.mit.edu	36	17	45039618	45039618	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007229	exon9	c.C830T	p.A277V	.	.	.
EME1	146956	broad.mit.edu	36	17	45808444	45808444	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166131	exon3	c.G794A	p.G265D	.	.	.
EPN3	55040	broad.mit.edu	36	17	45969289	45969289	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017957	exon2	c.G373A	p.E125K	.	.	.
CACNA1G	8913	broad.mit.edu	36	17	46036633	46036633	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198382	exon21	c.G4219A	p.G1407R	.	.	.
TM4SF5	9032	broad.mit.edu	36	17	4630856	4630856	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003963	exon2	c.C201T	p.A67A	.	.	.
VMO1	284013	broad.mit.edu	36	17	4635453	4635453	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182566	exon3	c.G553T	p.G185C	.	.	.
NUP88	4927	broad.mit.edu	36	17	5231135	5231135	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002532	exon15	c.A1936C	p.S646R	.	.	.
MRPS23	51649	broad.mit.edu	36	17	53273608	53273608	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016070	exon3	c.A228G	p.S76S	.	.	.
MPO	4353	broad.mit.edu	36	17	53705894	53705894	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000250	exon9	c.G1501A	p.G501S	.	.	.
BZRAP1	9256	broad.mit.edu	36	17	53741098	53741098	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004758	exon22	c.G4534A	p.G1512R	.	.	.
TEX14	56155	broad.mit.edu	36	17	54004390	54004390	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198393	exon25	c.A3728G	p.E1243G	.	.	.
CLTC	1213	broad.mit.edu	36	17	55088001	55088001	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004859	exon6	c.G800A	p.S267N	.	.	.
TMEM49	81671	broad.mit.edu	36	17	55205915	55205915	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030938	exon7	c.G601A	p.G201R	.	.	.
TBX4	9496	broad.mit.edu	36	17	56915132	56915132	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018488	exon8	c.C1111A	p.P371T	.	.	.
INTS2	57508	broad.mit.edu	36	17	57329675	57329675	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020748	exon11	c.G1455A	p.M485I	.	.	.
MED13	9969	broad.mit.edu	36	17	57495408	57495408	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005121	exon2	c.T103C	p.W35R	.	.	.
ACE	1636	broad.mit.edu	36	17	58928071	58928071	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001178057	exon12	c.G1839A	p.P613P	.	.	.
POLG2	11232	broad.mit.edu	36	17	59923513	59923513	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007215	exon1	c.G36T	p.K12N	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64385348	64385348	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007168	exon31	c.C3986T	p.A1329V	.	.	.
ALOX12	239	broad.mit.edu	36	17	6840168	6840168	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000697	exon1	c.G8T	p.R3L	.	.	.
ASGR1	432	broad.mit.edu	36	17	7018243	7018243	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001197216	exon6	c.G415A	p.A139T	.	.	.
C17orf28	283987	broad.mit.edu	36	17	70460706	70460706	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030630	exon16	c.C2042T	p.T681M	.	.	.
DVL2	1856	broad.mit.edu	36	17	7073472	7073472	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004422	exon7	c.G766A	p.V256I	.	.	.
GGA3	23163	broad.mit.edu	36	17	70747120	70747120	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014001	exon13	c.G1612T	p.G538C	.	.	.
RECQL5	9400	broad.mit.edu	36	17	71137952	71137952	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004259	exon14	c.A1719C	p.E573D	.	.	.
GALK1	2584	broad.mit.edu	36	17	71271634	71271634	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000154	exon2	c.G294A	p.S98S	.	.	.
UNC13D	201294	broad.mit.edu	36	17	71347902	71347902	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199242	exon10	c.G857A	p.R286Q	.	.	.
FBF1	85302	broad.mit.edu	36	17	71425841	71425841	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080542	exon20	c.C2198T	p.T733M	.	.	.
EXOC7	23265	broad.mit.edu	36	17	71609425	71609425	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145299	exon3	c.C241T	p.L81L	.	.	.
MPDU1	9526	broad.mit.edu	36	17	7427947	7427947	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004870	exon1	c.C43T	p.P15S	.	.	.
UBB	7314	broad.mit.edu	36	17	16226510	16226510	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018955	exon2	c.564delC	p.I188fs	.	.	.
FXR2	9513	broad.mit.edu	36	17	7436847	7436847	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004860	exon14	c.1619delC	p.P540fs	.	.	.
ADAMTS1	9510	broad.mit.edu	36	21	27138555	27138555	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006988	exon1	c.C590T	p.T197M	.	.	.
ADAMTS5	11096	broad.mit.edu	36	21	27259898	27259898	+	Silent	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007038	exon1	c.G684T	p.P228P	.	.	.
USP16	10600	broad.mit.edu	36	21	29344299	29344299	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001992	exon16	c.C2119T	p.R707C	.	.	.
SFRS15	57466	broad.mit.edu	36	21	31966391	31966391	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145444	exon19	c.G2591A	p.R864H	.	.	.
PRDM15	63977	broad.mit.edu	36	21	42114523	42114523	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022115	exon23	c.C3127T	p.R1043C	.	.	.
WDR4	10785	broad.mit.edu	36	21	43166840	43166840	+	Silent	SNP	A	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033661	exon3	c.T186A	p.G62G	.	.	.
CRYAA	1409	broad.mit.edu	36	21	43465258	43465258	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000394	exon3	c.C321T	p.H107H	.	.	.
SIK1	150094	broad.mit.edu	36	21	43666073	43666073	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173354	exon5	c.C372T	p.N124N	.	.	.
AGPAT3	56894	broad.mit.edu	36	21	44214984	44214984	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020132	exon6	c.C533T	p.T178M	.	.	.
TRPM2	7226	broad.mit.edu	36	21	44679474	44679474	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003307	exon28	c.G4007A	p.R1336H	.	.	.
ITGB2	3689	broad.mit.edu	36	21	45146013	45146013	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127491	exon6	c.G563A	p.R188Q	.	.	.
ADARB1	104	broad.mit.edu	36	21	45420362	45420362	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015834	exon4	c.G318A	p.A106A	.	.	.
SLC19A1	6573	broad.mit.edu	36	21	45775842	45775842	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194255	exon3	c.G838A	p.G280S	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21632603	21632603	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004540	exon8	c.922delA	p.K308fs	.	.	.
CLCN7	1186	broad.mit.edu	36	16	1455271	1455271	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001287	exon2	c.C211T	p.P71S	.	.	.
ABCC1	4363	broad.mit.edu	36	16	16133175	16133175	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019862	exon26	c.C3671T	p.P1224L	.	.	.
TMC5	79838	broad.mit.edu	36	16	19390930	19390930	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024780	exon7	c.G1064A	p.R355H	.	.	.
GPRC5B	51704	broad.mit.edu	36	16	19791388	19791388	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016235	exon2	c.G281A	p.G94D	.	.	.
GPRC5B	51704	broad.mit.edu	36	16	19791594	19791594	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016235	exon2	c.G75A	p.S25S	.	.	.
LUC7L	55692	broad.mit.edu	36	16	198093	198093	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201412	exon4	c.G351A	p.A117A	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20883750	20883750	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017539	exon53	c.G8957A	p.R2986Q	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20883903	20883903	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017539	exon53	c.G8804A	p.R2935Q	.	.	.
SCNN1G	6340	broad.mit.edu	36	16	23105141	23105141	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039	exon2	c.C48T	p.P16P	.	.	.
GGA2	23062	broad.mit.edu	36	16	23401792	23401792	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015044	exon9	c.C833T	p.T278M	.	.	.
NDUFAB1	4706	broad.mit.edu	36	16	23506055	23506055	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005003	exon2	c.C255T	p.Y85Y	.	.	.
IL4R	3566	broad.mit.edu	36	16	27281387	27281387	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000418	exon11	c.C1213T	p.R405W	.	.	.
QPRT	23475	broad.mit.edu	36	16	29598026	29598026	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014298	exon1	c.G7A	p.A3T	.	.	.
BCL7C	9274	broad.mit.edu	36	16	30807756	30807756	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004765	exon5	c.A454G	p.I152V	.	.	.
FBXL19	54620	broad.mit.edu	36	16	30847344	30847344	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099784	exon6	c.T743C	p.L248P	.	.	.
SETD1A	9739	broad.mit.edu	36	16	30898002	30898002	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014712	exon14	c.C3394T	p.R1132C	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3764576	3764576	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004380	exon12	c.C2278T	p.P760S	.	.	.
ADCY9	115	broad.mit.edu	36	16	3956011	3956011	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001116	exon11	c.C3828T	p.D1276D	.	.	.
ADCY9	115	broad.mit.edu	36	16	3967525	3967525	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001116	exon9	c.C2787T	p.A929A	.	.	.
ABCC11	85320	broad.mit.edu	36	16	46766686	46766686	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145186	exon26	c.C3682A	p.L1228I	.	.	.
CYLD	1540	broad.mit.edu	36	16	49372681	49372681	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015247	exon11	c.G1542A	p.T514T	.	.	.
FTO	79068	broad.mit.edu	36	16	52471291	52471291	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080432	exon6	c.G1010A	p.R337H	.	.	.
GPR97	222487	broad.mit.edu	36	16	56277290	56277290	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170776	exon11	c.G1491A	p.P497P	.	.	.
CNGB1	1258	broad.mit.edu	36	16	56549849	56549849	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135639	exon11	c.C803T	p.P268L	.	.	.
ELMO3	79767	broad.mit.edu	36	16	65795194	65795194	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024712	exon20	c.C2235T	p.N745N	.	.	.
ZDHHC1	29800	broad.mit.edu	36	16	65989627	65989627	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013304	exon8	c.C916T	p.R306W	.	.	.
ATP6V0D1	9114	broad.mit.edu	36	16	66029979	66029979	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004691	exon8	c.G1009A	p.A337T	.	.	.
ATP6V0D1	9114	broad.mit.edu	36	16	66030262	66030262	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004691	exon7	c.C829T	p.L277F	.	.	.
SLC7A6	9057	broad.mit.edu	36	16	66887908	66887908	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003983	exon9	c.G1260A	p.R420R	.	.	.
VPS4A	27183	broad.mit.edu	36	16	67911603	67911603	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013245	exon7	c.G679A	p.D227N	.	.	.
AARS	16	broad.mit.edu	36	16	68861076	68861076	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001605	exon7	c.G908A	p.R303Q	.	.	.
COG4	25839	broad.mit.edu	36	16	69087773	69087773	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015386	exon12	c.G1544A	p.R515H	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69570369	69570369	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032821	exon30	c.C4584T	p.L1528L	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69609612	69609612	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032821	exon23	c.G3565A	p.V1189I	.	.	.
FTSJD1	55783	broad.mit.edu	36	16	69875468	69875468	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018348	exon3	c.T1857C	p.D619D	.	.	.
FA2H	79152	broad.mit.edu	36	16	73331447	73331447	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024306	exon2	c.G338A	p.R113Q	.	.	.
RBFOX1	54715	broad.mit.edu	36	16	7508328	7508328	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145893	exon2	c.C266T	p.A89V	.	.	.
CDYL2	124359	broad.mit.edu	36	16	79212179	79212179	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152342	exon4	c.G989A	p.R330Q	.	.	.
HSDL1	83693	broad.mit.edu	36	16	82720751	82720751	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031463	exon5	c.C797T	p.S266L	.	.	.
USP10	9100	broad.mit.edu	36	16	83370062	83370062	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005153	exon14	c.T2270A	p.I757N	.	.	.
CLEC18B	497190	broad.mit.edu	36	16	73009466	73009466	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011880	exon3	c.448delT	p.Y150fs	.	.	.
CEP192	55125	broad.mit.edu	36	18	13039590	13039590	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032142	exon16	c.C2800T	p.Q934X	.	.	.
CEP192	55125	broad.mit.edu	36	18	13106476	13106476	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032142	exon43	c.C7390T	p.R2464X	.	.	.
DSG3	1830	broad.mit.edu	36	18	27309983	27309983	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001944	exon16	c.C2762A	p.S921Y	.	.	.
KLHL14	57565	broad.mit.edu	36	18	28575951	28575951	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020805	exon3	c.G1007A	p.R336Q	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41735063	41735063	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020964	exon26	c.G4542A	p.P1514P	.	.	.
MAPK4	5596	broad.mit.edu	36	18	46509650	46509650	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002747	exon6	c.C1192T	p.R398C	.	.	.
MBD2	8932	broad.mit.edu	36	18	49985392	49985392	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015832	exon2	c.C676T	p.R226X	.	.	.
ATP8B1	5205	broad.mit.edu	36	18	53466879	53466879	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005603	exon28	c.C3595T	p.R1199C	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5413422	5413422	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012307	exon11	c.C1294T	p.R432C	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5423483	5423483	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012307	exon8	c.T897A	p.D299E	.	.	.
MALT1	10892	broad.mit.edu	36	18	54552593	54552593	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173844	exon11	c.C1442T	p.T481M	.	.	.
MALT1	10892	broad.mit.edu	36	18	54565713	54565713	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173844	exon16	c.A2101G	p.I701V	.	.	.
ZNF532	55205	broad.mit.edu	36	18	54737936	54737936	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018181	exon4	c.G1437A	p.T479T	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5479118	5479118	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012307	exon2	c.C65T	p.A22V	.	.	.
RNF152	220441	broad.mit.edu	36	18	57634371	57634371	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173557	exon2	c.G306A	p.L102L	.	.	.
CLUL1	27098	broad.mit.edu	36	18	608060	608060	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014410	exon2	c.C60T	p.C20C	.	.	.
TSHZ1	10194	broad.mit.edu	36	18	71127691	71127691	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005786	exon2	c.G1206A	p.S402S	.	.	.
TSHZ1	10194	broad.mit.edu	36	18	71129127	71129127	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005786	exon2	c.G2642T	p.R881M	.	.	.
ZNF516	9658	broad.mit.edu	36	18	72220114	72220114	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014643	exon4	c.C2944T	p.P982S	.	.	.
ZNF516	9658	broad.mit.edu	36	18	72282379	72282379	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014643	exon3	c.G1620A	p.A540A	.	.	.
TSHZ1	10194	broad.mit.edu	36	18	71127431	71127431	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005786	exon2	c.946delC	p.P316fs	.	.	.
ZBED2	79413	broad.mit.edu	36	3	112795424	112795424	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024508	exon2	c.G315A	p.M105I	.	.	.
C3orf52	79669	broad.mit.edu	36	3	113314582	113314582	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024616	exon5	c.T549C	p.S183S	.	.	.
SYN2	6854	broad.mit.edu	36	3	12203986	12203986	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133625	exon13	c.C1484T	p.S495L	.	.	.
STXBP5L	9515	broad.mit.edu	36	3	122483817	122483817	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014980	exon20	c.C2125T	p.R709C	.	.	.
ADCY5	111	broad.mit.edu	36	3	124526965	124526965	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183357	exon8	c.G1982A	p.R661H	.	.	.
TXNRD3IT1	645840	broad.mit.edu	36	3	127774009	127774009	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039783	exon3	c.A68C	p.E23A	.	.	.
PLXND1	23129	broad.mit.edu	36	3	130758171	130758171	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015103	exon35	c.C5640T	p.Y1880Y	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1346596	1346596	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014461	exon11	c.G1341A	p.T447T	.	.	.
CEP63	80254	broad.mit.edu	36	3	135748898	135748898	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025180	exon10	c.T961C	p.Y321H	.	.	.
PPP2R3A	5523	broad.mit.edu	36	3	137279955	137279955	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181897	exon6	c.G738A	p.S246S	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1399991	1399991	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014461	exon19	c.C2416T	p.P806S	.	.	.
CLSTN2	64084	broad.mit.edu	36	3	141650136	141650136	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022131	exon6	c.C873T	p.A291A	.	.	.
TRPC1	7220	broad.mit.edu	36	3	143937976	143937976	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003304	exon2	c.G238A	p.V80I	.	.	.
FGD5	152273	broad.mit.edu	36	3	14880705	14880705	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152536	exon2	c.G2592A	p.S864S	.	.	.
SERP1	27230	broad.mit.edu	36	3	151744942	151744942	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014445	exon3	c.G194T	p.G65V	.	.	.
SIAH2	6478	broad.mit.edu	36	3	151942710	151942710	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005067	exon2	c.G883A	p.D295N	.	.	.
MED12L	116931	broad.mit.edu	36	3	152287430	152287430	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053002	exon1	c.T27C	p.Y9Y	.	.	.
GFM1	85476	broad.mit.edu	36	3	159865856	159865856	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024996	exon12	c.T1417G	p.F473V	.	.	.
SCHIP1	29970	broad.mit.edu	36	3	161088235	161088235	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001197108	exon4	c.G345T	p.E115D	.	.	.
SMC4	10051	broad.mit.edu	36	3	161624001	161624001	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002800	exon14	c.G2114A	p.R705H	.	.	.
SLITRK3	22865	broad.mit.edu	36	3	166389915	166389915	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014926	exon2	c.C1398T	p.N466N	.	.	.
NCEH1	57552	broad.mit.edu	36	3	173834219	173834219	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146276	exon5	c.C1087T	p.R363C	.	.	.
TBL1XR1	79718	broad.mit.edu	36	3	178250606	178250606	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024665	exon7	c.C575T	p.T192I	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180434779	180434779	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006218	exon21	c.A3140G	p.H1047R	PIK3CA,breast,NS,Substitution - Missense,0	.	.
CCDC39	339829	broad.mit.edu	36	3	181847651	181847651	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181426	exon11	c.G1437A	p.A479A	.	.	.
MCCC1	56922	broad.mit.edu	36	3	184222988	184222988	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020166	exon16	c.G1780T	p.D594Y	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184393539	184393539	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015078	exon27	c.T2958C	p.N986N	.	.	.
ABCC5	10057	broad.mit.edu	36	3	185151971	185151971	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005688	exon20	c.A2896G	p.T966A	.	.	.
AP2M1	1173	broad.mit.edu	36	3	185381451	185381451	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025205	exon5	c.C544T	p.L182F	.	.	.
LSG1	55341	broad.mit.edu	36	3	195867575	195867575	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018385	exon5	c.G521T	p.S174I	.	.	.
MUC4	4585	broad.mit.edu	36	3	197000142	197000142	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018406	exon2	c.G2704A	p.A902T	.	.	.
RARB	5915	broad.mit.edu	36	3	25597059	25597059	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000965	exon5	c.C628T	p.R210X	.	.	.
ZCWPW2	152098	broad.mit.edu	36	3	28451701	28451701	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040432	exon3	c.C429T	p.G143G	.	.	.
OSBPL10	114884	broad.mit.edu	36	3	31896217	31896217	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017784	exon2	c.C391T	p.L131L	.	.	.
CRBN	51185	broad.mit.edu	36	3	3191859	3191859	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001173482	exon2	c.G159A	p.P53P	.	.	.
GLB1	2720	broad.mit.edu	36	3	33074696	33074696	+	Missense_Mutation	SNP	G	A	A	rs72555366	unknown	TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000404	exon6	c.C622T	p.R208C	.	.	.
PDCD6IP	10015	broad.mit.edu	36	3	33881780	33881780	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001162429	exon17	c.G2301A	p.V767V	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36846104	36846104	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014831	exon22	c.G8632A	p.A2878T	.	.	.
EPM2AIP1	9852	broad.mit.edu	36	3	37008493	37008493	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014805	exon1	c.G1080A	p.A360A	.	.	.
EPM2AIP1	9852	broad.mit.edu	36	3	37009071	37009071	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014805	exon1	c.C502T	p.R168X	.	.	.
GOLGA4	2803	broad.mit.edu	36	3	37298574	37298574	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172713	exon4	c.G350A	p.R117Q	.	.	.
SLC22A14	9389	broad.mit.edu	36	3	38324174	38324174	+	Missense_Mutation	SNP	C	T	T	rs1078846	by-hapmap	TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004803	exon3	c.C734T	p.S245L	.	.	.
VIPR1	7433	broad.mit.edu	36	3	42535747	42535747	+	Silent	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004624	exon3	c.C213A	p.T71T	.	.	.
C3orf39	84892	broad.mit.edu	36	3	43096657	43096657	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032806	exon2	c.G1271A	p.R424H	.	.	.
CCR9	10803	broad.mit.edu	36	3	45918181	45918181	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006641	exon2	c.C861T	p.F287F	.	.	.
PRSS45	377047	broad.mit.edu	36	3	46758884	46758884	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199183	exon4	c.T647A	p.L216Q	.	.	.
NBEAL2	23218	broad.mit.edu	36	3	47023606	47023606	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015175	exon46	c.G7181A	p.R2394Q	.	.	.
CDC25A	993	broad.mit.edu	36	3	48184418	48184418	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001789	exon10	c.C951T	p.S317S	.	.	.
COL7A1	1294	broad.mit.edu	36	3	48602102	48602102	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000094	exon16	c.G2104A	p.V702I	.	.	.
COL7A1	1294	broad.mit.edu	36	3	48605591	48605591	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000094	exon5	c.C630T	p.L210L	.	.	.
DAG1	1605	broad.mit.edu	36	3	49544656	49544656	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004393	exon3	c.G1708A	p.V570M	.	.	.
RNF123	63891	broad.mit.edu	36	3	49710923	49710923	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022064	exon8	c.G530A	p.R177H	.	.	.
IQCF3	401067	broad.mit.edu	36	3	51839540	51839540	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001085479	exon5	c.C148T	p.R50C	.	.	.
TLR9	54106	broad.mit.edu	36	3	52230699	52230699	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017442	exon2	c.T2673C	p.L891L	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52364035	52364035	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015512	exon21	c.A3617C	p.N1206T	.	.	.
CHDH	55349	broad.mit.edu	36	3	53826928	53826928	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018397	exon9	c.A1701G	p.A567A	.	.	.
DNAH12	201625	broad.mit.edu	36	3	57463137	57463137	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178504	exon10	c.C1196T	p.A399V	.	.	.
FAM116A	201627	broad.mit.edu	36	3	57594072	57594072	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152678	exon15	c.G1313A	p.R438H	.	.	.
SLMAP	7871	broad.mit.edu	36	3	57792206	57792206	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007159	exon2	c.G255A	p.L85L	.	.	.
FLNB	2317	broad.mit.edu	36	3	58067541	58067541	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164317	exon12	c.C1842T	p.G614G	.	.	.
FLNB	2317	broad.mit.edu	36	3	58087457	58087457	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164317	exon24	c.A4150G	p.S1384G	.	.	.
DNASE1L3	1776	broad.mit.edu	36	3	58165577	58165577	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004944	exon6	c.C392A	p.S131Y	.	.	.
OR5H14	403273	broad.mit.edu	36	3	99351227	99351227	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005514	exon1	c.C308T	p.S103L	.	.	.
NR1I2	8856	broad.mit.edu	36	3	121014350	121014350	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003889	exon5	c.647delG	p.R216fs	.	.	.
MECOM	2122	broad.mit.edu	36	3	170315951	170315951	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105077	exon8	c.2034delA	p.K678fs	.	.	.
ZNF619	285267	broad.mit.edu	36	3	40504664	40504664	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145083	exon4	c.1527delT	p.H509fs	.	.	.
CCDC66	285331	broad.mit.edu	36	3	56572843	56572843	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001141947	exon4	c.194delA	p.E65fs	.	.	.
C3orf67	200844	broad.mit.edu	36	3	58824595	58824596	+	Frame_Shift_Del	DEL	AG	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198463	exon12	c.946_947del	p.316_316del	.	.	.
ARL13B	200894	broad.mit.edu	36	3	95238137	95238137	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001174150	exon5	c.538delA	p.K180fs	.	.	.
PAH	5053	broad.mit.edu	36	12	101769623	101769623	+	Nonsense_Mutation	SNP	G	C	C	rs62642910	unknown	TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000277	exon8	c.C884G	p.S295X	.	.	.
KLRK1	22914	broad.mit.edu	36	12	10417053	10417053	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199805	exon13	c.C578T	p.A193V	.	.	.
POLR3B	55703	broad.mit.edu	36	12	105328849	105328849	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018082	exon12	c.G1082A	p.R361Q	.	.	.
OAS3	4940	broad.mit.edu	36	12	111866745	111866745	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006187	exon3	c.C542T	p.A181V	.	.	.
KSR2	283455	broad.mit.edu	36	12	116447213	116447213	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173598	exon14	c.C1959T	p.H653H	.	.	.
CCDC60	160777	broad.mit.edu	36	12	118462808	118462808	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178499	exon14	c.C1558T	p.R520X	.	.	.
SPPL3	121665	broad.mit.edu	36	12	119690557	119690557	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139015	exon8	c.C727T	p.R243C	.	.	.
RNF34	80196	broad.mit.edu	36	12	120345581	120345581	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025126	exon6	c.G938A	p.R313Q	.	.	.
KDM2B	84678	broad.mit.edu	36	12	120471177	120471177	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032590	exon6	c.C671T	p.P224L	.	.	.
BCL7A	605	broad.mit.edu	36	12	120977108	120977108	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020993	exon5	c.C454T	p.Q152X	.	.	.
KNTC1	9735	broad.mit.edu	36	12	121594706	121594706	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014708	exon8	c.T606C	p.H202H	.	.	.
RILPL2	196383	broad.mit.edu	36	12	122481066	122481066	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145058	exon2	c.C433T	p.R145C	.	.	.
NCOR2	9612	broad.mit.edu	36	12	123453046	123453046	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006312	exon16	c.G1497A	p.Q499Q	.	.	.
GPRC5A	9052	broad.mit.edu	36	12	12953191	12953191	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003979	exon2	c.C741T	p.S247S	.	.	.
HEBP1	50865	broad.mit.edu	36	12	13019625	13019625	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015987	exon4	c.C454T	p.R152C	.	.	.
MMP17	4326	broad.mit.edu	36	12	130891185	130891185	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016155	exon4	c.G537A	p.A179A	.	.	.
GSG1	83445	broad.mit.edu	36	12	13134723	13134723	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153823	exon2	c.G306A	p.E102E	.	.	.
ATF7IP	55729	broad.mit.edu	36	12	14469493	14469493	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018179	exon2	c.A1377G	p.P459P	.	.	.
FBXL14	144699	broad.mit.edu	36	12	1572610	1572610	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152441	exon1	c.A884C	p.Q295P	.	.	.
DERA	51071	broad.mit.edu	36	12	16076817	16076817	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015954	exon7	c.C712T	p.R238W	.	.	.
PDE3A	5139	broad.mit.edu	36	12	20414058	20414058	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000921	exon1	c.G573A	p.A191A	.	.	.
LRMP	4033	broad.mit.edu	36	12	25123637	25123637	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006152	exon7	c.C110T	p.S37L	.	.	.
RASSF8	11228	broad.mit.edu	36	12	26109029	26109029	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007211	exon4	c.A435C	p.K145N	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2670405	2670405	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001129842	exon47	c.G6196A	p.A2066T	.	.	.
PPFIBP1	8496	broad.mit.edu	36	12	27726830	27726830	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198915	exon21	c.T1733C	p.I578T	.	.	.
DNM1L	10059	broad.mit.edu	36	12	32782479	32782479	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012062	exon16	c.C1689G	p.S563R	.	.	.
PRICKLE1	144165	broad.mit.edu	36	12	41146332	41146332	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144882	exon6	c.C706T	p.R236C	.	.	.
CCDC77	84318	broad.mit.edu	36	12	412669	412669	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130148	exon7	c.C645T	p.I215I	.	.	.
ADCY6	112	broad.mit.edu	36	12	47463090	47463090	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015270	exon1	c.G395A	p.R132H	.	.	.
CACNB3	784	broad.mit.edu	36	12	47506862	47506862	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000725	exon11	c.C948T	p.T316T	.	.	.
SCN8A	6334	broad.mit.edu	36	12	50431440	50431440	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014191	exon14	c.C2166T	p.C722C	.	.	.
ACVR1B	91	broad.mit.edu	36	12	50665261	50665261	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020327	exon6	c.A842G	p.H281R	.	.	.
KRT83	3889	broad.mit.edu	36	12	50997738	50997738	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002282	exon4	c.C744T	p.Y248Y	.	.	.
KRT85	3891	broad.mit.edu	36	12	51043452	51043452	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002283	exon5	c.G796A	p.V266I	.	.	.
KRT75	9119	broad.mit.edu	36	12	51113945	51113945	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004693	exon1	c.A411G	p.Q137Q	.	.	.
KRT6C	286887	broad.mit.edu	36	12	51152196	51152196	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173086	exon2	c.G676A	p.D226N	.	.	.
KRT4	3851	broad.mit.edu	36	12	51489467	51489467	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002272	exon4	c.C1023T	p.D341D	.	.	.
KRT18	3875	broad.mit.edu	36	12	51632353	51632353	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199187	exon7	c.G1132T	p.A378S	.	.	.
MAP3K12	7786	broad.mit.edu	36	12	52161272	52161272	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193511	exon14	c.C2640T	p.S880S	.	.	.
ITGA5	3678	broad.mit.edu	36	12	53099033	53099033	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002205	exon1	c.G217A	p.G73R	.	.	.
NTF3	4908	broad.mit.edu	36	12	5411769	5411769	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102654	exon1	c.G18A	p.T6T	.	.	.
LRP1	4035	broad.mit.edu	36	12	55860841	55860841	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002332	exon33	c.C5511T	p.D1837D	.	.	.
SHMT2	6472	broad.mit.edu	36	12	55912271	55912271	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166359	exon5	c.G460A	p.G154S	.	.	.
R3HDM2	22864	broad.mit.edu	36	12	55950043	55950043	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014925	exon13	c.C1304T	p.A435V	.	.	.
MBD6	114785	broad.mit.edu	36	12	56206842	56206842	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052897	exon7	c.G1647A	p.Q549Q	.	.	.
CYP27B1	1594	broad.mit.edu	36	12	56445156	56445156	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000785	exon4	c.C695T	p.T232M	.	.	.
PLEKHG6	55200	broad.mit.edu	36	12	6294561	6294561	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144857	exon3	c.G328A	p.E110K	.	.	.
WIF1	11197	broad.mit.edu	36	12	63731420	63731420	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007191	exon10	c.A1116G	p.P372P	.	.	.
LLPH	84298	broad.mit.edu	36	12	64804016	64804016	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032338	exon3	c.A261G	p.L87L	.	.	.
IFFO1	25900	broad.mit.edu	36	12	6535277	6535277	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001193457	exon1	c.G180A	p.P60P	.	.	.
LEPREL2	10536	broad.mit.edu	36	12	6818498	6818498	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014262	exon14	c.C1978T	p.P660S	.	.	.
LRRC23	10233	broad.mit.edu	36	12	6892248	6892248	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135217	exon7	c.C852T	p.D284D	.	.	.
TPH2	121278	broad.mit.edu	36	12	70659100	70659100	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173353	exon7	c.C907T	p.R303W	.	.	.
KCNC2	3747	broad.mit.edu	36	12	73728296	73728296	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139137	exon4	c.C1684T	p.R562C	.	.	.
KRR1	11103	broad.mit.edu	36	12	74188474	74188474	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007043	exon2	c.G105A	p.T35T	.	.	.
CD163L1	283316	broad.mit.edu	36	12	7442174	7442174	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174941	exon7	c.G1682A	p.G561E	.	.	.
NAV3	89795	broad.mit.edu	36	12	77122955	77122955	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014903	exon38	c.G6878A	p.R2293Q	.	.	.
A2M	2	broad.mit.edu	36	12	9156240	9156240	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000014	exon3	c.G430T	p.V144L	.	.	.
FAM71C	196472	broad.mit.edu	36	12	98566307	98566307	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153364	exon1	c.G224A	p.R75H	.	.	.
ANKS1B	56899	broad.mit.edu	36	12	98724588	98724588	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152788	exon4	c.C394A	p.L132I	.	.	.
SYT10	341359	broad.mit.edu	36	12	33470627	33470627	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198992	exon2	c.222delT	p.F74fs	.	.	.
C1RL	51279	broad.mit.edu	36	12	7140542	7140542	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016546	exon6	c.1051delC	p.L351fs	.	.	.
DUSP6	1848	broad.mit.edu	36	12	88268828	88268829	+	Frame_Shift_Del	DEL	CC	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001946	exon2	c.505_506del	p.169_169del	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29082373	29082373	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002420	exon27	c.A3756G	p.E1252E	.	.	.
GCHFR	2644	broad.mit.edu	36	15	38846769	38846769	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005258	exon3	c.G185A	p.R62H	.	.	.
JMJD7-PLA2G4B	8681	broad.mit.edu	36	15	39914364	39914364	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005090	exon2	c.T199C	p.W67R	.	.	.
EIF3J	8669	broad.mit.edu	36	15	42639763	42639763	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003758	exon7	c.T596A	p.I199N	.	.	.
DUOX1	53905	broad.mit.edu	36	15	43214751	43214751	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017434	exon6	c.C465T	p.T155T	.	.	.
SHF	90525	broad.mit.edu	36	15	43251751	43251751	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138356	exon6	c.G851A	p.R284Q	.	.	.
SLC24A5	283652	broad.mit.edu	36	15	46218482	46218482	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_205850	exon7	c.C896A	p.P299H	.	.	.
SLC12A1	6557	broad.mit.edu	36	15	46329065	46329065	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184832	exon14	c.G1686A	p.A562A	.	.	.
GALK2	2585	broad.mit.edu	36	15	47363194	47363194	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002044	exon7	c.G743A	p.R248Q	.	.	.
CYP19A1	1588	broad.mit.edu	36	15	49290383	49290383	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031226	exon11	c.G1426A	p.D476N	.	.	.
GNB5	10681	broad.mit.edu	36	15	50204033	50204033	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006578	exon10	c.C979T	p.R327C	.	.	.
ONECUT1	3175	broad.mit.edu	36	15	50869131	50869131	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004498	exon1	c.C243T	p.G81G	.	.	.
SLTM	79811	broad.mit.edu	36	15	56959594	56959594	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024755	exon21	c.G3001A	p.A1001T	.	.	.
FAM96A	84191	broad.mit.edu	36	15	62160377	62160377	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032231	exon3	c.C316T	p.R106X	.	.	.
IGDCC4	57722	broad.mit.edu	36	15	63468777	63468777	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020962	exon14	c.G2434A	p.G812S	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69931617	69931617	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006901	exon36	c.G6385A	p.V2129I	.	.	.
MAN2C1	4123	broad.mit.edu	36	15	73447910	73447910	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006715	exon1	c.C68T	p.P23L	.	.	.
CSPG4	1464	broad.mit.edu	36	15	73755368	73755368	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001897	exon10	c.C6547T	p.R2183W	.	.	.
AGPHD1	123688	broad.mit.edu	36	15	76612619	76612619	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013619	exon5	c.G674A	p.G225E	.	.	.
RASGRF1	5923	broad.mit.edu	36	15	77071183	77071183	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002891	exon22	c.C3084T	p.G1028G	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82357641	82357641	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207517	exon14	c.C1495T	p.R499W	.	.	.
NTRK3	4916	broad.mit.edu	36	15	86491576	86491576	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007156	exon5	c.G458A	p.R153Q	.	.	.
MRPS11	64963	broad.mit.edu	36	15	86819416	86819416	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022839	exon4	c.G353A	p.R118Q	.	.	.
PGPEP1L	145814	broad.mit.edu	36	15	97331814	97331814	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102612	exon3	c.G118A	p.G40R	.	.	.
ADAMTS17	170691	broad.mit.edu	36	15	98333883	98333883	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139057	exon21	c.G3017A	p.R1006H	.	.	.
BAHD1	22893	broad.mit.edu	36	15	38539245	38539245	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014952	exon2	c.1290delC	p.H430fs	.	.	.
CFI	3426	broad.mit.edu	36	4	110883196	110883196	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000204	exon12	c.C1434T	p.N478N	.	.	.
ANK2	287	broad.mit.edu	36	4	114497752	114497752	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001148	exon38	c.C8529A	p.S2843R	.	.	.
SETD7	80854	broad.mit.edu	36	4	140673797	140673797	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030648	exon3	c.G344A	p.R115H	.	.	.
UCP1	7350	broad.mit.edu	36	4	141709277	141709277	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021833	exon1	c.A57G	p.S19S	.	.	.
RNF150	57484	broad.mit.edu	36	4	142273117	142273117	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020724	exon1	c.G296A	p.R99H	.	.	.
FAM198B	51313	broad.mit.edu	36	4	159311412	159311412	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128424	exon2	c.G566A	p.R189Q	.	.	.
NEK1	4750	broad.mit.edu	36	4	170582360	170582360	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199400	exon28	c.G2925A	p.S975S	.	.	.
ADAM29	11086	broad.mit.edu	36	4	176134449	176134449	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130705	exon3	c.T1198A	p.C400S	.	.	.
DCTD	1635	broad.mit.edu	36	4	184073074	184073074	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001921	exon3	c.G240A	p.P80P	.	.	.
SORBS2	8470	broad.mit.edu	36	4	186782071	186782071	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021069	exon13	c.G1494A	p.T498T	.	.	.
SORBS2	8470	broad.mit.edu	36	4	186815595	186815595	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145672	exon6	c.G451A	p.G151R	.	.	.
CYP4V2	285440	broad.mit.edu	36	4	187367354	187367354	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207352	exon10	c.G1339A	p.E447K	.	.	.
POLN	353497	broad.mit.edu	36	4	2142213	2142213	+	Silent	SNP	T	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181808	exon11	c.A1545T	p.S515S	.	.	.
ZCCHC4	29063	broad.mit.edu	36	4	24975844	24975844	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024936	exon12	c.G1364A	p.R455H	.	.	.
GABRA2	2555	broad.mit.edu	36	4	45947260	45947260	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000807	exon10	c.C1178T	p.T393M	.	.	.
ZAR1	326340	broad.mit.edu	36	4	48187068	48187068	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175619	exon1	c.G3A	p.M1I	.	.	.
PPAT	5471	broad.mit.edu	36	4	56964228	56964228	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002703	exon4	c.C499A	p.P167T	.	.	.
EVC	2121	broad.mit.edu	36	4	5771920	5771920	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153717	exon2	c.G219A	p.A73A	.	.	.
JAKMIP1	152789	broad.mit.edu	36	4	6137562	6137562	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144720	exon5	c.G866A	p.R289Q	.	.	.
UGT2B11	10720	broad.mit.edu	36	4	70112997	70112997	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001073	exon2	c.A753G	p.G251G	.	.	.
TBC1D14	57533	broad.mit.edu	36	4	7046930	7046930	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001113361	exon4	c.C962T	p.A321V	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73424197	73424197	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014243	exon5	c.C739T	p.R247C	.	.	.
ANKRD17	26057	broad.mit.edu	36	4	74176749	74176749	+	Silent	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198889	exon28	c.A4707C	p.S1569S	.	.	.
CXCL11	6373	broad.mit.edu	36	4	77176143	77176143	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005409	exon1	c.A22G	p.I8V	.	.	.
SORCS2	57537	broad.mit.edu	36	4	7781056	7781056	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020777	exon22	c.C2949T	p.D983D	.	.	.
HELQ	113510	broad.mit.edu	36	4	84594018	84594018	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133636	exon2	c.T402C	p.P134P	.	.	.
ZNF330	27309	broad.mit.edu	36	4	142362982	142362982	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014487	exon2	c.7delA	p.K3fs	.	.	.
GRK4	2868	broad.mit.edu	36	4	2985353	2985356	+	Splice_Site	DEL	AGTA	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182982	exon8	c.741_741del	p.247_247del	.	.	.
THAP9	79725	broad.mit.edu	36	4	84045073	84045073	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024672	exon2	c.241delA	p.K81fs	.	.	.
WWC3	55841	broad.mit.edu	36	X	10066864	10066864	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015691	exon21	c.G2972A	p.R991H	.	.	.
ZMAT1	84460	broad.mit.edu	36	X	101028336	101028336	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011657	exon6	c.T529C	p.C177R	.	.	.
FAM199X	139231	broad.mit.edu	36	X	103298227	103298227	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207318	exon1	c.C105T	p.S35S	.	.	.
FAM199X	139231	broad.mit.edu	36	X	103317451	103317451	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207318	exon3	c.A466G	p.I156V	.	.	.
ESX1	80712	broad.mit.edu	36	X	103382103	103382103	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153448	exon4	c.C683T	p.A228V	.	.	.
GUCY2F	2986	broad.mit.edu	36	X	108538963	108538963	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001522	exon9	c.C1882T	p.R628X	.	.	.
KIAA1210	57481	broad.mit.edu	36	X	118107439	118107439	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020721	exon11	c.G1782T	p.M594I	.	.	.
C1GALT1C1	29071	broad.mit.edu	36	X	119644157	119644157	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152692	exon3	c.C893T	p.A298V	.	.	.
GLUD2	2747	broad.mit.edu	36	X	120010485	120010485	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012084	exon1	c.T1266C	p.I422I	.	.	.
THOC2	57187	broad.mit.edu	36	X	122575595	122575595	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081550	exon34	c.G4438C	p.E1480Q	.	.	.
XPNPEP2	7512	broad.mit.edu	36	X	128706918	128706918	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003399	exon4	c.C293T	p.S98F	.	.	.
USP26	83844	broad.mit.edu	36	X	131987719	131987719	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031907	exon1	c.C2196T	p.F732F	.	.	.
GPC4	2239	broad.mit.edu	36	X	132267756	132267756	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001448	exon5	c.A970G	p.M324V	.	.	.
FAM127A	8933	broad.mit.edu	36	X	133994363	133994363	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001078171	exon1	c.G284A	p.R95Q	.	.	.
SAGE1	55511	broad.mit.edu	36	X	134816275	134816275	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018666	exon7	c.A635G	p.E212G	.	.	.
ZIC3	7547	broad.mit.edu	36	X	136476584	136476584	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003413	exon1	c.G68A	p.R23H	.	.	.
IDS	3423	broad.mit.edu	36	X	148387737	148387737	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006123	exon5	c.C514T	p.R172X	.	.	.
GABRQ	55879	broad.mit.edu	36	X	151570810	151570810	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018558	exon8	c.G1067A	p.R356Q	.	.	.
GABRQ	55879	broad.mit.edu	36	X	151572027	151572027	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018558	exon9	c.G1526A	p.R509H	.	.	.
NSDHL	50814	broad.mit.edu	36	X	151788083	151788083	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001129765	exon9	c.T889G	p.Y297D	.	.	.
ZNF275	10838	broad.mit.edu	36	X	152265733	152265733	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080485	exon4	c.C396T	p.G132G	.	.	.
ZNF275	10838	broad.mit.edu	36	X	152265896	152265896	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080485	exon4	c.G559A	p.G187R	.	.	.
ATP2B3	492	broad.mit.edu	36	X	152479530	152479530	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021949	exon17	c.C3042T	p.F1014F	.	.	.
ATP2B3	492	broad.mit.edu	36	X	152483671	152483671	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021949	exon19	c.C3258T	p.G1086G	.	.	.
BCAP31	10134	broad.mit.edu	36	X	152622713	152622713	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001139457	exon5	c.G573A	p.S191S	.	.	.
ABCD1	215	broad.mit.edu	36	X	152658785	152658785	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000033	exon6	c.G1534A	p.G512S	.	.	.
IDH3G	3421	broad.mit.edu	36	X	152706164	152706164	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004135	exon8	c.C623T	p.A208V	.	.	.
RENBP	5973	broad.mit.edu	36	X	152863018	152863018	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002910	exon2	c.T74C	p.V25A	.	.	.
BEND2	139105	broad.mit.edu	36	X	18123396	18123396	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153346	exon7	c.C1121T	p.S374L	.	.	.
SH3KBP1	30011	broad.mit.edu	36	X	19516694	19516694	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024666	exon11	c.T1175C	p.L392P	.	.	.
RPS6KA3	6197	broad.mit.edu	36	X	20091004	20091004	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004586	exon19	c.G1840A	p.G614S	.	.	.
PTCHD1	139411	broad.mit.edu	36	X	23321225	23321225	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173495	exon3	c.G1669T	p.G557W	.	.	.
CASK	8573	broad.mit.edu	36	X	41313888	41313888	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126054	exon16	c.A1559G	p.H520R	.	.	.
EFHC2	80258	broad.mit.edu	36	X	44005462	44005462	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025184	exon4	c.A409T	p.T137S	.	.	.
CFP	5199	broad.mit.edu	36	X	47371502	47371502	+	Missense_Mutation	SNP	C	T	T	rs8177077	unknown	TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002621	exon6	c.G748A	p.G250S	.	.	.
EBP	10682	broad.mit.edu	36	X	48271607	48271607	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006579	exon5	c.C511T	p.R171C	.	.	.
WAS	7454	broad.mit.edu	36	X	48429122	48429122	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000377	exon4	c.C416T	p.A139V	.	.	.
GRIPAP1	56850	broad.mit.edu	36	X	48740629	48740629	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020137	exon3	c.G136A	p.A46T	.	.	.
PRAF2	11230	broad.mit.edu	36	X	48817082	48817082	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007213	exon2	c.G351A	p.A117A	.	.	.
CCDC22	28952	broad.mit.edu	36	X	48985432	48985432	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014008	exon3	c.G235A	p.G79S	.	.	.
CLCN5	1184	broad.mit.edu	36	X	49742259	49742259	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127899	exon14	c.G2336A	p.R779Q	.	.	.
SHROOM4	57477	broad.mit.edu	36	X	50394043	50394043	+	Silent	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020717	exon4	c.C1770A	p.T590T	.	.	.
GPR173	54328	broad.mit.edu	36	X	53123438	53123438	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018969	exon2	c.G910A	p.V304M	.	.	.
IQSEC2	23096	broad.mit.edu	36	X	53289375	53289375	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001111125	exon9	c.T2753C	p.V918A	.	.	.
SMC1A	8243	broad.mit.edu	36	X	53448788	53448788	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006306	exon13	c.C2077T	p.R693W	.	.	.
TRO	7216	broad.mit.edu	36	X	54973099	54973099	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039705	exon12	c.G3217A	p.V1073I	.	.	.
STS	412	broad.mit.edu	36	X	7187531	7187531	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000351	exon5	c.C539T	p.T180M	.	.	.
SLC16A2	6567	broad.mit.edu	36	X	73660995	73660995	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006517	exon3	c.G874A	p.V292I	.	.	.
KIAA2022	340533	broad.mit.edu	36	X	73878011	73878011	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001008537	exon3	c.A3106G	p.I1036V	.	.	.
TBX22	50945	broad.mit.edu	36	X	79168900	79168900	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001109878	exon6	c.C675T	p.H225H	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	90977250	90977250	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032968	exon1	c.C91T	p.R31X	.	.	.
GPR143	4935	broad.mit.edu	36	X	9688808	9688808	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000273	exon2	c.G309A	p.S103S	.	.	.
FLNA	2316	broad.mit.edu	36	X	153246786	153246786	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001456	exon11	c.1603delG	p.D535fs	.	.	.
KLF11	8462	broad.mit.edu	36	2	10109940	10109940	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177718	exon4	c.G1343A	p.R448H	.	.	.
IL18R1	8809	broad.mit.edu	36	2	102358886	102358886	+	Missense_Mutation	SNP	G	A	A	rs35292939	unknown	TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003855	exon4	c.G556A	p.V186M	.	.	.
ANAPC1	64682	broad.mit.edu	36	2	112262282	112262282	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022662	exon39	c.G4799A	p.R1600Q	.	.	.
STEAP3	55240	broad.mit.edu	36	2	119721800	119721800	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182915	exon4	c.G598A	p.V200M	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	124978584	124978584	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130773	exon8	c.C1305T	p.R435R	.	.	.
IWS1	55677	broad.mit.edu	36	2	127970089	127970089	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017969	exon7	c.C1671T	p.D557D	.	.	.
UGGT1	56886	broad.mit.edu	36	2	128653908	128653908	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020120	exon35	c.A3894G	p.T1298T	.	.	.
CCNT2	905	broad.mit.edu	36	2	135427372	135427372	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058241	exon9	c.A877G	p.T293A	.	.	.
FAM84A	151354	broad.mit.edu	36	2	14691763	14691763	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145175	exon2	c.G209A	p.R70H	.	.	.
TPO	7173	broad.mit.edu	36	2	1499666	1499666	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175721	exon13	c.C2391T	p.S797S	.	.	.
NEB	4703	broad.mit.edu	36	2	152091708	152091708	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164507	exon148	c.C21915T	p.L7305L	.	.	.
STAM2	10254	broad.mit.edu	36	2	152685493	152685493	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005843	exon14	c.T1419C	p.G473G	.	.	.
TANC1	85461	broad.mit.edu	36	2	159751781	159751781	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033394	exon16	c.G2742A	p.K914K	.	.	.
MARCH7	64844	broad.mit.edu	36	2	160307893	160307893	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022826	exon3	c.C229T	p.R77C	.	.	.
PXDN	7837	broad.mit.edu	36	2	1631078	1631078	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012293	exon17	c.C3481T	p.R1161W	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165657054	165657054	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006922	exon27	c.G4763C	p.G1588A	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165705564	165705564	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006922	exon13	c.G1862A	p.R621H	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165954012	165954012	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040143	exon26	c.A5450G	p.K1817R	.	.	.
TTC21B	79809	broad.mit.edu	36	2	166494932	166494932	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024753	exon9	c.A1083G	p.L361L	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166600846	166600846	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165964	exon16	c.G3303A	p.T1101T	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167811283	167811283	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199144	exon7	c.A4469G	p.D1490G	.	.	.
ABCB11	8647	broad.mit.edu	36	2	169538531	169538531	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003742	exon13	c.A1374G	p.G458G	.	.	.
ABCB11	8647	broad.mit.edu	36	2	169561465	169561465	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003742	exon6	c.G403A	p.E135K	.	.	.
LRP2	4036	broad.mit.edu	36	2	169805880	169805880	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004525	exon25	c.G3909T	p.K1303N	.	.	.
TLK1	9874	broad.mit.edu	36	2	171725097	171725097	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012290	exon1	c.G88A	p.A30T	.	.	.
DYNC1I2	1781	broad.mit.edu	36	2	172312601	172312601	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001378	exon18	c.C1873T	p.R625X	.	.	.
SLC25A12	8604	broad.mit.edu	36	2	172374427	172374427	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003705	exon13	c.C1240T	p.R414W	.	.	.
OLA1	29789	broad.mit.edu	36	2	174651980	174651980	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001011708	exon9	c.G577A	p.E193K	.	.	.
HOXD10	3236	broad.mit.edu	36	2	176689972	176689972	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002148	exon1	c.G165A	p.P55P	.	.	.
TTN	7273	broad.mit.edu	36	2	179113100	179113100	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon179	c.C70843T	p.L23615L	.	.	.
TTN	7273	broad.mit.edu	36	2	179120660	179120660	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon167	c.C66743T	p.P22248L	.	.	.
TTN	7273	broad.mit.edu	36	2	179187506	179187506	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon89	c.G21785A	p.G7262D	.	.	.
TTN	7273	broad.mit.edu	36	2	179202395	179202395	+	Silent	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon68	c.A17107C	p.R5703R	.	.	.
TTN	7273	broad.mit.edu	36	2	179206002	179206002	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon62	c.T15906C	p.I5302I	.	.	.
TTN	7273	broad.mit.edu	36	2	179324967	179324967	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133379	exon46	c.C10405T	p.R3469C	.	.	.
COL5A2	1290	broad.mit.edu	36	2	189607129	189607129	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000393	exon54	c.G4412A	p.R1471H	.	.	.
CCDC150	284992	broad.mit.edu	36	2	197219457	197219457	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080539	exon2	c.G160A	p.D54N	.	.	.
AOX1	316	broad.mit.edu	36	2	201193719	201193719	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159	exon17	c.C1806T	p.D602D	.	.	.
AOX1	316	broad.mit.edu	36	2	201214152	201214152	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001159	exon24	c.C2655T	p.F885F	.	.	.
CASP10	843	broad.mit.edu	36	2	201768880	201768880	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032974	exon5	c.C648T	p.S216S	.	.	.
NDUFS1	4719	broad.mit.edu	36	2	206717925	206717925	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005006	exon9	c.G808A	p.V270M	.	.	.
CRYGB	1419	broad.mit.edu	36	2	208718901	208718901	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005210	exon2	c.C94T	p.R32C	.	.	.
C2orf80	389073	broad.mit.edu	36	2	208753765	208753765	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099334	exon6	c.A315G	p.E105E	.	.	.
SMARCAL1	50485	broad.mit.edu	36	2	216988115	216988115	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014140	exon3	c.C443A	p.A148D	.	.	.
CDK5R2	8941	broad.mit.edu	36	2	219533566	219533566	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003936	exon1	c.C780T	p.A260A	.	.	.
CCDC108	255101	broad.mit.edu	36	2	219597057	219597057	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_194302	exon15	c.G2519A	p.C840Y	.	.	.
MOGAT1	116255	broad.mit.edu	36	2	223261484	223261484	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_058165	exon2	c.A272G	p.H91R	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230409837	230409837	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004238	exon5	c.G1115A	p.R372Q	.	.	.
SP110	3431	broad.mit.edu	36	2	230745119	230745119	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080424	exon16	c.C1722T	p.C574C	.	.	.
ALPP	250	broad.mit.edu	36	2	232952862	232952862	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001632	exon5	c.C629T	p.T210M	.	.	.
CHRND	1144	broad.mit.edu	36	2	233108112	233108112	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000751	exon12	c.G1400A	p.R467H	.	.	.
GIGYF2	26058	broad.mit.edu	36	2	233418735	233418735	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001103148	exon25	c.G3337A	p.E1113K	.	.	.
SAG	6295	broad.mit.edu	36	2	233894065	233894065	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000541	exon5	c.G232A	p.V78M	.	.	.
SCLY	51540	broad.mit.edu	36	2	238671659	238671659	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016510	exon12	c.G1262A	p.S421N	.	.	.
ANKMY1	51281	broad.mit.edu	36	2	241117254	241117254	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016552	exon4	c.C559T	p.R187C	.	.	.
PPP1R7	5510	broad.mit.edu	36	2	241751378	241751378	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002712	exon7	c.C603T	p.I201I	.	.	.
CENPO	79172	broad.mit.edu	36	2	24890812	24890812	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199803	exon3	c.T262C	p.L88L	.	.	.
GPR113	165082	broad.mit.edu	36	2	26390218	26390218	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145169	exon7	c.C983T	p.P328L	.	.	.
SLC30A3	7781	broad.mit.edu	36	2	27332759	27332759	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003459	exon7	c.C1017T	p.I339I	.	.	.
TTC15	51112	broad.mit.edu	36	2	3370489	3370489	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016030	exon2	c.C88T	p.L30F	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50002817	50002817	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138735	exon6	c.G1098A	p.T366T	.	.	.
OTX1	5013	broad.mit.edu	36	2	63136193	63136193	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199770	exon5	c.C303T	p.S101S	.	.	.
ADD2	119	broad.mit.edu	36	2	70744314	70744314	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001185054	exon16	c.G1932A	p.P644P	.	.	.
ATP6V1B1	525	broad.mit.edu	36	2	71016705	71016705	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001692	exon1	c.G113A	p.R38H	.	.	.
PAIP2B	400961	broad.mit.edu	36	2	71283121	71283121	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020459	exon2	c.G107T	p.W36L	.	.	.
DYSF	8291	broad.mit.edu	36	2	71679278	71679278	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130982	exon34	c.G3693T	p.W1231C	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73570376	73570376	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015120	exon10	c.T7779C	p.H2593H	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73681885	73681885	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015120	exon19	c.C11925T	p.N3975N	.	.	.
SLC4A5	57835	broad.mit.edu	36	2	74322637	74322637	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021196	exon15	c.G2110A	p.A704T	.	.	.
LOXL3	84695	broad.mit.edu	36	2	74617503	74617503	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032603	exon5	c.G753A	p.T251T	.	.	.
C2orf3	6936	broad.mit.edu	36	2	75775006	75775006	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003203	exon6	c.G889A	p.V297I	.	.	.
CTNNA2	1496	broad.mit.edu	36	2	79990332	79990332	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004389	exon7	c.C957T	p.A319A	.	.	.
RETSAT	54884	broad.mit.edu	36	2	85426621	85426621	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017750	exon6	c.C1105T	p.R369C	.	.	.
ASAP2	8853	broad.mit.edu	36	2	9432431	9432431	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135191	exon17	c.C1653T	p.C551C	.	.	.
TEKT4	150483	broad.mit.edu	36	2	94903007	94903007	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144705	exon2	c.C514T	p.R172W	.	.	.
B3GALT1	8708	broad.mit.edu	36	2	168434097	168434097	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020981	exon2	c.302delG	p.W101fs	.	.	.
SGOL2	151246	broad.mit.edu	36	2	201145237	201145237	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001160046	exon7	c.1923delA	p.L641fs	.	.	.
VIL1	7429	broad.mit.edu	36	2	219010092	219010094	+	In_Frame_Del	DEL	TCT	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007127	exon17	c.1973_1975del	p.658_659del	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108731553	108731553	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021224	exon3	c.C5539T	p.R1847C	.	.	.
C9orf4	23732	broad.mit.edu	36	9	110943646	110943646	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014334	exon4	c.G660T	p.R220S	.	.	.
MUSK	4593	broad.mit.edu	36	9	112570062	112570062	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005592	exon8	c.G1062A	p.T354T	.	.	.
SUSD1	64420	broad.mit.edu	36	9	113880725	113880725	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022486	exon12	c.T1667C	p.L556P	.	.	.
PRPF4	9128	broad.mit.edu	36	9	115093082	115093082	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004697	exon13	c.C1340T	p.A447V	.	.	.
TNC	3371	broad.mit.edu	36	9	116878650	116878650	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002160	exon8	c.A2700G	p.R900R	.	.	.
ASTN2	23245	broad.mit.edu	36	9	118841986	118841986	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014010	exon5	c.C1203T	p.G401G	.	.	.
CDK5RAP2	55755	broad.mit.edu	36	9	122239608	122239608	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018249	exon25	c.G3741A	p.Q1247Q	.	.	.
C5	727	broad.mit.edu	36	9	122823769	122823769	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001735	exon11	c.C1141T	p.Q381X	.	.	.
OR1L3	26735	broad.mit.edu	36	9	124477838	124477838	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005234	exon1	c.G609A	p.G203G	.	.	.
GOLGA1	2800	broad.mit.edu	36	9	126714096	126714096	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002077	exon11	c.G874A	p.V292I	.	.	.
CIZ1	25792	broad.mit.edu	36	9	129979772	129979772	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001131015	exon11	c.G1544A	p.R515H	.	.	.
TOR1A	1861	broad.mit.edu	36	9	131616080	131616080	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000113	exon5	c.G991A	p.D331N	.	.	.
PRDM12	59335	broad.mit.edu	36	9	132533491	132533491	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021619	exon3	c.C540T	p.I180I	.	.	.
SETX	23064	broad.mit.edu	36	9	134195153	134195153	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015046	exon10	c.G1653A	p.Q551Q	.	.	.
REXO4	57109	broad.mit.edu	36	9	135267295	135267295	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020385	exon4	c.C855T	p.P285P	.	.	.
TMEM8C	389827	broad.mit.edu	36	9	135373957	135373957	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080483	exon3	c.G259A	p.D87N	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136844157	136844157	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000093	exon47	c.C3732T	p.D1244D	.	.	.
CARD9	64170	broad.mit.edu	36	9	138384030	138384030	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052813	exon7	c.G1070A	p.R357Q	.	.	.
SEC16A	9919	broad.mit.edu	36	9	138489998	138489998	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014866	exon3	c.G1891A	p.V631M	.	.	.
FREM1	158326	broad.mit.edu	36	9	14832415	14832415	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144966	exon10	c.G1637T	p.R546L	.	.	.
ADAMTSL1	92949	broad.mit.edu	36	9	18523267	18523267	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052866	exon3	c.C214T	p.R72X	.	.	.
CCL21	6366	broad.mit.edu	36	9	34699818	34699818	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002989	exon2	c.C144T	p.Y48Y	.	.	.
NPR2	4882	broad.mit.edu	36	9	35796091	35796091	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003995	exon15	c.C2233T	p.R745W	.	.	.
FBXO10	26267	broad.mit.edu	36	9	37512822	37512822	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012166	exon7	c.G1930A	p.A644T	.	.	.
MCART1	92014	broad.mit.edu	36	9	37878004	37878004	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033412	exon3	c.C544T	p.R182W	.	.	.
SMC5	23137	broad.mit.edu	36	9	72085583	72085583	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015110	exon6	c.G767A	p.R256Q	.	.	.
TMEM2	23670	broad.mit.edu	36	9	73539630	73539630	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013390	exon6	c.C1305T	p.V435V	.	.	.
C9orf95	54981	broad.mit.edu	36	9	76866303	76866303	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017881	exon9	c.G581A	p.C194Y	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79123278	79123278	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018037	exon40	c.G5147A	p.G1716D	.	.	.
GNA14	9630	broad.mit.edu	36	9	79236121	79236121	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004297	exon4	c.C529T	p.R177C	.	.	.
C9orf64	84267	broad.mit.edu	36	9	85760927	85760927	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032307	exon1	c.C309T	p.C103C	.	.	.
C9orf170	401535	broad.mit.edu	36	9	88953474	88953474	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001709	exon1	c.C9T	p.S3S	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89690797	89690797	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178828	exon4	c.C1575T	p.A525A	.	.	.
DMRT1	1761	broad.mit.edu	36	9	906764	906764	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021951	exon4	c.T824C	p.M275T	.	.	.
SECISBP2	79048	broad.mit.edu	36	9	91124506	91124506	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024077	exon2	c.G156A	p.P52P	.	.	.
SEMA4D	10507	broad.mit.edu	36	9	91196018	91196018	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142287	exon11	c.G755A	p.R252Q	.	.	.
FAM120A	23196	broad.mit.edu	36	9	95331599	95331599	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014612	exon9	c.C1650T	p.P550P	.	.	.
TRIM14	9830	broad.mit.edu	36	9	99894030	99894030	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014788	exon5	c.C775T	p.R259X	.	.	.
PCID2	55795	broad.mit.edu	36	13	112881329	112881329	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018386	exon13	c.C1062T	p.D354D	.	.	.
LAMP1	3916	broad.mit.edu	36	13	113023975	113023975	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005561	exon8	c.C1046T	p.A349V	.	.	.
TMCO3	55002	broad.mit.edu	36	13	113222960	113222960	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017905	exon8	c.C1254T	p.L418L	.	.	.
GPR12	2835	broad.mit.edu	36	13	26231856	26231856	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005288	exon2	c.G109C	p.E37Q	.	.	.
FLT1	2321	broad.mit.edu	36	13	27906278	27906278	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002019	exon5	c.C593T	p.T198M	.	.	.
FRY	10129	broad.mit.edu	36	13	31674571	31674571	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023037	exon31	c.G3925A	p.G1309S	.	.	.
STARD13	90627	broad.mit.edu	36	13	32601571	32601571	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178006	exon5	c.C1243A	p.L415I	.	.	.
SERP2	387923	broad.mit.edu	36	13	43851812	43851812	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010897	exon2	c.G120C	p.W40C	.	.	.
GTF2F2	2963	broad.mit.edu	36	13	44592853	44592853	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004128	exon1	c.C63T	p.V21V	.	.	.
COG3	83548	broad.mit.edu	36	13	44963664	44963664	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031431	exon10	c.A1085G	p.H362R	.	.	.
FNDC3A	22862	broad.mit.edu	36	13	48617940	48617940	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079673	exon8	c.T845C	p.V282A	.	.	.
RCBTB1	55213	broad.mit.edu	36	13	49032144	49032144	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018191	exon5	c.G355A	p.V119I	.	.	.
NEK5	341676	broad.mit.edu	36	13	51537572	51537572	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199289	exon22	c.C2099T	p.P700L	.	.	.
DIAPH3	81624	broad.mit.edu	36	13	59333636	59333636	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030932	exon16	c.G1854A	p.T618T	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83353254	83353254	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052910	exon1	c.C390T	p.D130D	.	.	.
GPC6	10082	broad.mit.edu	36	13	93832789	93832789	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005708	exon7	c.G1273A	p.G425R	.	.	.
SOX21	11166	broad.mit.edu	36	13	94162139	94162139	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007084	exon1	c.C166T	p.P56S	.	.	.
FARP1	10160	broad.mit.edu	36	13	97818450	97818450	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005766	exon5	c.G398T	p.R133M	.	.	.
UBAC2	337867	broad.mit.edu	36	13	98818096	98818096	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144072	exon8	c.G862A	p.V288I	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37109583	37109583	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016179	exon11	c.2391delT	p.F797fs	.	.	.
SCD	6319	broad.mit.edu	36	10	102097849	102097849	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005063	exon2	c.G66A	p.A22A	.	.	.
SCD	6319	broad.mit.edu	36	10	102110585	102110585	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005063	exon6	c.G985A	p.A329T	.	.	.
PITX3	5309	broad.mit.edu	36	10	103981506	103981506	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005029	exon3	c.C150T	p.G50G	.	.	.
ARL3	403	broad.mit.edu	36	10	104439643	104439643	+	Silent	SNP	A	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004311	exon4	c.T312A	p.G104G	.	.	.
SLK	9748	broad.mit.edu	36	10	105751245	105751245	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014720	exon8	c.G918T	p.E306D	.	.	.
SORCS3	22986	broad.mit.edu	36	10	106908660	106908660	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014978	exon11	c.G1650A	p.L550L	.	.	.
VAX1	11023	broad.mit.edu	36	10	118887411	118887411	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199131	exon1	c.C147T	p.G49G	.	.	.
FRMD4A	55691	broad.mit.edu	36	10	13738874	13738874	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018027	exon22	c.G2721A	p.P907P	.	.	.
CACNB2	783	broad.mit.edu	36	10	18868556	18868556	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201596	exon14	c.G1880A	p.R627H	.	.	.
NEBL	10529	broad.mit.edu	36	10	21164463	21164463	+	Silent	SNP	T	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006393	exon14	c.A1434T	p.A478A	.	.	.
APBB1IP	54518	broad.mit.edu	36	10	26840775	26840775	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019043	exon7	c.G625A	p.E209K	APBB1IP,lung,NS,Substitution - Nonsense,0	.	.
PTCHD3	374308	broad.mit.edu	36	10	27732224	27732224	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001034842	exon3	c.T1280G	p.V427G	.	.	.
MKX	283078	broad.mit.edu	36	10	28070324	28070324	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173576	exon3	c.G304A	p.E102K	.	.	.
DIP2C	22982	broad.mit.edu	36	10	449992	449992	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014974	exon8	c.C918T	p.R306R	.	.	.
GDF2	2658	broad.mit.edu	36	10	48036410	48036410	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016204	exon1	c.C290T	p.T97M	.	.	.
MAPK8	5599	broad.mit.edu	36	10	49303939	49303939	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002750	exon7	c.A691G	p.I231V	.	.	.
NET1	10276	broad.mit.edu	36	10	5488100	5488100	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005863	exon9	c.C1086T	p.V362V	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55257245	55257245	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142767	exon30	c.G4161A	p.P1387P	.	.	.
CALML5	51806	broad.mit.edu	36	10	5531131	5531131	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017422	exon1	c.G271A	p.D91N	.	.	.
FBXO18	84893	broad.mit.edu	36	10	5977123	5977123	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032807	exon2	c.G121A	p.A41T	.	.	.
PRKCQ	5588	broad.mit.edu	36	10	6510275	6510275	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006257	exon18	c.G2021A	p.R674Q	.	.	.
HERC4	26091	broad.mit.edu	36	10	69384399	69384399	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022079	exon20	c.A2320G	p.R774G	.	.	.
DDX50	79009	broad.mit.edu	36	10	70343928	70343928	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024045	exon7	c.G1051A	p.V351I	.	.	.
HK1	3098	broad.mit.edu	36	10	70789786	70789786	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033498	exon6	c.C366T	p.I122I	.	.	.
HK1	3098	broad.mit.edu	36	10	70830872	70830872	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033498	exon21	c.G2741A	p.R914Q	.	.	.
AIFM2	84883	broad.mit.edu	36	10	71544808	71544808	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198696	exon8	c.G844A	p.A282T	.	.	.
ANXA7	310	broad.mit.edu	36	10	74809875	74809875	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001156	exon10	c.A1009T	p.T337S	.	.	.
ITIH5	80760	broad.mit.edu	36	10	7719257	7719257	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030569	exon5	c.G592A	p.A198T	.	.	.
ITIH2	3698	broad.mit.edu	36	10	7814348	7814348	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002216	exon14	c.C1689T	p.D563D	.	.	.
DYDC1	143241	broad.mit.edu	36	10	82088304	82088304	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138812	exon7	c.G403A	p.A135T	.	.	.
LARP4B	23185	broad.mit.edu	36	10	849147	849147	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015155	exon17	c.C1936T	p.R646X	.	.	.
LRIT2	340745	broad.mit.edu	36	10	85975202	85975202	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017924	exon1	c.G55A	p.A19T	.	.	.
EXOC6	54536	broad.mit.edu	36	10	94644756	94644756	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013848	exon4	c.T396C	p.P132P	.	.	.
CYP2C8	1558	broad.mit.edu	36	10	96814616	96814616	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000770	exon4	c.T573C	p.D191D	.	.	.
C10orf12	26148	broad.mit.edu	36	10	98732879	98732879	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015652	exon1	c.G1742A	p.R581H	.	.	.
SLIT1	6585	broad.mit.edu	36	10	98797461	98797461	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003061	exon16	c.G1610A	p.R537H	.	.	.
ZDHHC16	84287	broad.mit.edu	36	10	99201884	99201884	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198043	exon3	c.C291T	p.I97I	.	.	.
MMS19	64210	broad.mit.edu	36	10	99218130	99218130	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022362	exon13	c.C1087G	p.P363A	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24856893	24856893	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-3877-01	TCGA-AA-3877-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019590	exon14	c.2921delA	p.E974fs	.	.	.
KCNN2	3781	broad.mit.edu	36	5	113727582	113727582	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021614	exon2	c.C567T	p.H189H	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11438070	11438070	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001332	exon7	c.C884T	p.P295L	.	.	.
ALDH7A1	501	broad.mit.edu	36	5	125922924	125922924	+	Silent	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001182	exon11	c.C915A	p.A305A	.	.	.
MEGF10	84466	broad.mit.edu	36	5	126811231	126811231	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032446	exon22	c.A2812C	p.T938P	.	.	.
P4HA2	8974	broad.mit.edu	36	5	131574030	131574030	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017974	exon6	c.G555A	p.T185T	.	.	.
HSPA4	3308	broad.mit.edu	36	5	132453162	132453162	+	Silent	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002154	exon11	c.A1254G	p.E418E	.	.	.
SKP1	6500	broad.mit.edu	36	5	133522090	133522090	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170679	exon5	c.G411T	p.K137N	.	.	.
PHF15	23338	broad.mit.edu	36	5	133924468	133924468	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015288	exon6	c.C606T	p.C202C	.	.	.
SPOCK1	6695	broad.mit.edu	36	5	136504199	136504199	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004598	exon4	c.C316A	p.L106M	.	.	.
HNRNPA0	10949	broad.mit.edu	36	5	137116830	137116830	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006805	exon1	c.C825T	p.G275G	.	.	.
EGR1	1958	broad.mit.edu	36	5	137830487	137830487	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001964	exon2	c.G450A	p.W150X	.	.	.
HSPA9	3313	broad.mit.edu	36	5	137923574	137923574	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004134	exon11	c.G1288A	p.G430S	.	.	.
PCDHB3	56132	broad.mit.edu	36	5	140460955	140460955	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018937	exon1	c.G538A	p.V180I	.	.	.
PCDHB4	56131	broad.mit.edu	36	5	140483395	140483395	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018938	exon1	c.C1631T	p.A544V	.	.	.
PCDHB12	56124	broad.mit.edu	36	5	140568846	140568846	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018932	exon1	c.G183A	p.S61S	.	.	.
PCDHB12	56124	broad.mit.edu	36	5	140570293	140570293	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018932	exon1	c.G1630A	p.E544K	.	.	.
PCDHGA9	56107	broad.mit.edu	36	5	140764613	140764613	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018921	exon1	c.C1910T	p.A637V	.	.	.
PCDHGC4	56098	broad.mit.edu	36	5	140845610	140845610	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032406	exon1	c.G686A	p.R229Q	.	.	.
PCDH12	51294	broad.mit.edu	36	5	141305510	141305510	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016580	exon4	c.G3175T	p.A1059S	.	.	.
PCDH12	51294	broad.mit.edu	36	5	141315717	141315717	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016580	exon1	c.G1884A	p.S628S	.	.	.
RNF14	9604	broad.mit.edu	36	5	141333429	141333429	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183401	exon3	c.T92C	p.V31A	.	.	.
SPRY4	81848	broad.mit.edu	36	5	141674623	141674623	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030964	exon3	c.G304A	p.A102T	.	.	.
PPP2R2B	5521	broad.mit.edu	36	5	145960196	145960196	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001127381	exon8	c.C811T	p.P271S	.	.	.
FBXL7	23194	broad.mit.edu	36	5	15989591	15989591	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012304	exon4	c.C772T	p.R258W	.	.	.
MYO10	4651	broad.mit.edu	36	5	16752596	16752596	+	Silent	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012334	exon26	c.C3519T	p.V1173V	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167578303	167578303	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122679	exon23	c.C4802T	p.T1601I	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167585736	167585736	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122679	exon24	c.G5147A	p.R1716Q	.	.	.
RANBP17	64901	broad.mit.edu	36	5	170269287	170269287	+	Silent	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022897	exon6	c.C534A	p.T178T	.	.	.
UBTD2	92181	broad.mit.edu	36	5	171571770	171571770	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152277	exon3	c.C374T	p.P125L	.	.	.
NSD1	64324	broad.mit.edu	36	5	176570828	176570828	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022455	exon5	c.G2822A	p.R941H	.	.	.
RGS14	10636	broad.mit.edu	36	5	176727109	176727109	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006480	exon6	c.G572A	p.R191H	.	.	.
ZNF354C	30832	broad.mit.edu	36	5	178438333	178438333	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014594	exon5	c.G294T	p.Q98H	.	.	.
MGAT1	4245	broad.mit.edu	36	5	180151658	180151658	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002406	exon2	c.A920C	p.E307A	.	.	.
CDH6	1004	broad.mit.edu	36	5	31358821	31358821	+	Silent	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004932	exon12	c.C2022T	p.I674I	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33612200	33612200	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030955	exon19	c.G3688A	p.E1230K	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33917058	33917058	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030955	exon2	c.C412A	p.L138I	.	.	.
RAI14	26064	broad.mit.edu	36	5	34846958	34846958	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145522	exon8	c.A535G	p.N179D	.	.	.
RAD1	5810	broad.mit.edu	36	5	34950565	34950565	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002853	exon2	c.T190C	p.F64L	.	.	.
LMBRD2	92255	broad.mit.edu	36	5	36139939	36139939	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001007527	exon18	c.C2054T	p.S685L	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37099724	37099724	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015384	exon46	c.C7936T	p.R2646W	.	.	.
PRKAA1	5562	broad.mit.edu	36	5	40800835	40800835	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006251	exon7	c.C1084A	p.L362I	.	.	.
C7	730	broad.mit.edu	36	5	41017341	41017341	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000587	exon18	c.C2441T	p.T814M	.	.	.
MGC42105	167359	broad.mit.edu	36	5	43313111	43313111	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153361	exon3	c.G488T	p.S163I	.	.	.
MAP3K1	4214	broad.mit.edu	36	5	56214108	56214108	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005921	exon14	c.T3324C	p.S1108S	.	.	.
ACTBL2	345651	broad.mit.edu	36	5	56813899	56813899	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017992	exon1	c.A393G	p.P131P	.	.	.
IPO11	51194	broad.mit.edu	36	5	61846992	61846992	+	Silent	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134779	exon20	c.T1923C	p.C641C	.	.	.
MAST4	375449	broad.mit.edu	36	5	66432149	66432149	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015183	exon7	c.C476T	p.P159L	.	.	.
RASGRF2	5924	broad.mit.edu	36	5	80511836	80511836	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006909	exon18	c.T2773C	p.W925R	.	.	.
GPR98	84059	broad.mit.edu	36	5	89984064	89984064	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032119	exon19	c.A3562G	p.I1188V	.	.	.
BRD9	65980	broad.mit.edu	36	5	934237	934237	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023924	exon9	c.G1027A	p.E343K	.	.	.
ANKRD32	84250	broad.mit.edu	36	5	94040368	94040368	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032290	exon15	c.C1927T	p.R643X	.	.	.
TMEM149	79713	broad.mit.edu	36	19	40923764	40923764	+	Splice_Site	SNP	C	A	A	novel		TCGA-AA-3877-01	TCGA-AA-3877-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
