Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
TRIM24	8805	broad.mit.edu	36	7	137920102	137920103	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015905	exon19	c.3019_3020insA	p.E1007fs	.	.	.
LRRC8E	80131	broad.mit.edu	36	19	7870762	7870763	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-3982-01	TCGA-AA-3982-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025061	exon3	c.1355_1356insC	p.F452fs	.	.	.
FAM196A	642938	broad.mit.edu	36	10	128863926	128863927	+	Frame_Shift_Ins	INS	-	TA	TA	novel		TCGA-AA-3982-01	TCGA-AA-3982-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039762	exon4	c.724_725insTA	p.P242fs	.	.	.
ETV1	2115	broad.mit.edu	36	7	13945362	13945362	+	Silent	SNP	T	C	C	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163147	exon6	c.A270G	p.K90K	.	.	.
GIMAP1	170575	broad.mit.edu	36	7	150048642	150048642	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_130759	exon3	c.G617A	p.G206E	.	.	.
DFNA5	1687	broad.mit.edu	36	7	24750893	24750893	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127453	exon3	c.G217A	p.V73M	.	.	.
IKZF1	10320	broad.mit.edu	36	7	50422612	50422612	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_006060	exon6	c.G665C	p.R222P	.	.	.
EGFR	1956	broad.mit.edu	36	7	55191034	55191034	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201282	exon8	c.G907C	p.D303H	.	.	.
ZNF804B	219578	broad.mit.edu	36	7	88802407	88802407	+	Silent	SNP	T	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_181646	exon4	c.T2175A	p.T725T	.	.	.
DEFB116	245930	broad.mit.edu	36	20	29354893	29354893	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001037731	exon2	c.G92T	p.G31V	.	.	.
OR7C1	26664	broad.mit.edu	36	19	14771360	14771360	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_198944	exon1	c.G589A	p.V197M	.	.	.
CPAMD8	27151	broad.mit.edu	36	19	16969100	16969100	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015692	exon11	c.G1057T	p.A353S	.	.	.
TMEM190	147744	broad.mit.edu	36	19	60581028	60581028	+	Silent	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139172	exon4	c.C267T	p.S89S	.	.	.
ZNF419	79744	broad.mit.edu	36	19	62694769	62694769	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001098494	exon3	c.C194T	p.A65V	.	.	.
MLL4	9757	broad.mit.edu	36	19	40903413	40903413	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3982-01	TCGA-AA-3982-01			C	C	C	C	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_014727	exon3	c.1324delC	p.P442fs	.	.	.
ANGPT1	284	broad.mit.edu	36	8	108428470	108428470	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001146	exon2	c.C329T	p.S110L	.	.	.
TCEA1	6917	broad.mit.edu	36	8	55063299	55063299	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_201437	exon4	c.C331T	p.R111W	.	.	.
SULF1	23213	broad.mit.edu	36	8	70696012	70696012	+	Silent	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128205	exon14	c.G1566A	p.R522R	.	.	.
MTERFD1	51001	broad.mit.edu	36	8	97321075	97321075	+	Silent	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015942	exon8	c.G1074A	p.R358R	.	.	.
DFFA	1676	broad.mit.edu	36	1	10449840	10449840	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004401	exon3	c.C435A	p.D145E	.	.	.
FLG	2312	broad.mit.edu	36	1	150552414	150552414	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002016	exon3	c.A1572T	p.R524S	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156871078	156871078	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003126	exon39	c.T5444G	p.L1815W	.	.	.
ATP1A4	480	broad.mit.edu	36	1	158414066	158414066	+	Silent	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144699	exon18	c.C2724T	p.Y908Y	.	.	.
DARS2	55157	broad.mit.edu	36	1	172072797	172072797	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018122	exon8	c.G760A	p.G254S	.	.	.
KIAA0090	23065	broad.mit.edu	36	1	19436251	19436251	+	Silent	SNP	A	G	G	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015047	exon12	c.T1281C	p.D427D	.	.	.
NFASC	23114	broad.mit.edu	36	1	203217618	203217618	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001160331	exon19	c.C2350T	p.R784X	.	.	.
SLC26A9	115019	broad.mit.edu	36	1	204171508	204171508	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_134325	exon2	c.G64A	p.D22N	.	.	.
RYR2	6262	broad.mit.edu	36	1	235684429	235684429	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001035	exon15	c.T1408G	p.L470V	.	.	.
OR2T6	254879	broad.mit.edu	36	1	246618271	246618271	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005471	exon1	c.G739C	p.V247L	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37272209	37272209	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_000831	exon1	c.C88T	p.R30C	.	.	.
NOL9	79707	broad.mit.edu	36	1	6515186	6515186	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_024654	exon8	c.A1459G	p.S487G	.	.	.
ZZZ3	26009	broad.mit.edu	36	1	77820313	77820313	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015534	exon7	c.T1731A	p.F577L	.	.	.
DNTTIP2	30836	broad.mit.edu	36	1	94110255	94110255	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014597	exon5	c.C2028A	p.Y676X	.	.	.
C11orf53	341032	broad.mit.edu	36	11	110661799	110661799	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198498	exon4	c.C521T	p.P174L	.	.	.
VPS11	55823	broad.mit.edu	36	11	118449731	118449731	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021729	exon7	c.G1097C	p.R366T	.	.	.
OR8D2	283160	broad.mit.edu	36	11	123694922	123694922	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002918	exon1	c.C382T	p.R128C	.	.	.
HEPN1	641654	broad.mit.edu	36	11	124295061	124295061	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037558	exon1	c.C205T	p.R69W	.	.	.
LUZP2	338645	broad.mit.edu	36	11	24892632	24892632	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001009909	exon7	c.G494A	p.R165H	.	.	.
SCUBE2	57758	broad.mit.edu	36	11	9037492	9037492	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020974	exon9	c.G1024A	p.V342M	.	.	.
AMOTL1	154810	broad.mit.edu	36	11	94167936	94167936	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_130847	exon2	c.T161A	p.L54X	.	.	.
ESR1	2099	broad.mit.edu	36	6	152205441	152205441	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001122740	exon3	c.C469T	p.R157X	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152599111	152599111	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015293	exon25	c.T3792G	p.N1264K	.	.	.
MLLT6	4302	broad.mit.edu	36	17	34119324	34119324	+	Silent	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005937	exon6	c.C522T	p.C174C	.	.	.
GSDMB	55876	broad.mit.edu	36	17	35319651	35319651	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001042471	exon4	c.A460G	p.N154D	.	.	.
KRT33A	3883	broad.mit.edu	36	17	36755995	36755995	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004138	exon7	c.G1117A	p.A373T	.	.	.
NLRP1	22861	broad.mit.edu	36	17	5403369	5403369	+	Silent	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033007	exon4	c.G1371A	p.T457T	.	.	.
CCDC46	201134	broad.mit.edu	36	17	61354230	61354230	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199165	exon19	c.C1912G	p.L638V	.	.	.
CDR2L	30850	broad.mit.edu	36	17	70509864	70509864	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014603	exon4	c.G452A	p.R151H	.	.	.
TP53	7157	broad.mit.edu	36	17	7519233	7519233	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126114	exon5	c.G422A	p.C141Y	.	.	.
BACH1	571	broad.mit.edu	36	21	29621539	29621539	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206866	exon3	c.C1523T	p.T508I	.	.	.
C16orf45	89927	broad.mit.edu	36	16	15582587	15582587	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001142469	exon4	c.C266A	p.T89N	.	.	.
POLR3E	55718	broad.mit.edu	36	16	22227827	22227827	+	Silent	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018119	exon5	c.C246T	p.D82D	.	.	.
FTO	79068	broad.mit.edu	36	16	52417443	52417443	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001080432	exon3	c.T290G	p.I97S	.	.	.
NPRL3	8131	broad.mit.edu	36	16	76808	76808	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077350	exon14	c.C1605T	p.R535R	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9766147	9766147	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001134408	exon13	c.A2755G	p.K919E	.	.	.
ZNF521	25925	broad.mit.edu	36	18	21156053	21156053	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015461	exon3	c.T137A	p.V46E	.	.	.
POLI	11201	broad.mit.edu	36	18	50074332	50074332	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_007195	exon10	c.A1720G	p.K574E	.	.	.
STXBP5L	9515	broad.mit.edu	36	3	122435209	122435209	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_014980	exon12	c.G1168T	p.D390Y	.	.	.
RHO	6010	broad.mit.edu	36	3	130730452	130730452	+	Silent	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000539	exon1	c.C186T	p.T62T	.	.	.
NPHP3	27031	broad.mit.edu	36	3	133914796	133914796	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153240	exon6	c.A982C	p.M328L	.	.	.
ATP13A4	84239	broad.mit.edu	36	3	194603228	194603228	+	Silent	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032279	exon30	c.G3498A	p.P1166P	.	.	.
SHQ1	55164	broad.mit.edu	36	3	72949147	72949147	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018130	exon7	c.G806A	p.R269H	.	.	.
MUC20	200958	broad.mit.edu	36	3	196938689	196938689	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3982-01	TCGA-AA-3982-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098516	exon2	c.926delC	p.A309fs	.	.	.
CCDC92	80212	broad.mit.edu	36	12	122987674	122987674	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_025140	exon5	c.C880T	p.R294W	.	.	.
TMTC1	83857	broad.mit.edu	36	12	29795882	29795882	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001193451	exon5	c.G922T	p.V308L	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8901189	8901189	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_144670	exon24	c.G3011T	p.G1004V	.	.	.
RYR3	6263	broad.mit.edu	36	15	31906241	31906241	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001036	exon84	c.C11241G	p.N3747K	.	.	.
CILP	8483	broad.mit.edu	36	15	63276401	63276401	+	Silent	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003613	exon9	c.C3276T	p.L1092L	.	.	.
AKAP13	11214	broad.mit.edu	36	15	84054851	84054851	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006738	exon19	c.C5582A	p.S1861X	.	.	.
PHF17	79960	broad.mit.edu	36	4	129998014	129998014	+	Silent	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199320	exon8	c.G936A	p.A312A	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153471441	153471441	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_018315	exon6	c.A775T	p.R259X	.	.	.
GC	2638	broad.mit.edu	36	4	72839668	72839668	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000583	exon9	c.G1055A	p.R352K	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79407101	79407101	+	Silent	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025074	exon8	c.G777A	p.L259L	.	.	.
HERC5	51191	broad.mit.edu	36	4	89603772	89603772	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_016323	exon5	c.G755A	p.G252D	.	.	.
GRID2	2895	broad.mit.edu	36	4	94225285	94225285	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001510	exon3	c.C361T	p.R121C	.	.	.
PDLIM5	10611	broad.mit.edu	36	4	95716033	95716033	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_006457	exon5	c.C535A	p.L179M	.	.	.
RGAG1	57529	broad.mit.edu	36	X	109582324	109582324	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_020769	exon3	c.C1823A	p.S608Y	.	.	.
IGSF1	3547	broad.mit.edu	36	X	130237884	130237884	+	Silent	SNP	A	G	G	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170962	exon14	c.T2601C	p.T867T	.	.	.
AFF2	2334	broad.mit.edu	36	X	147551700	147551700	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002025	exon3	c.G760A	p.V254M	.	.	.
AFF2	2334	broad.mit.edu	36	X	147847601	147847601	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002025	exon12	c.A2603T	p.K868M	.	.	.
MECP2	4204	broad.mit.edu	36	X	152949471	152949471	+	Silent	SNP	T	C	C	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004992	exon4	c.A1002G	p.K334K	.	.	.
TMLHE	55217	broad.mit.edu	36	X	154389831	154389831	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184797	exon6	c.G917C	p.G306A	.	.	.
DMD	1756	broad.mit.edu	36	X	32626034	32626034	+	Silent	SNP	G	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004006	exon9	c.C834A	p.I278I	.	.	.
PCDP1	200373	broad.mit.edu	36	2	120121040	120121040	+	Silent	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029996	exon23	c.C1404T	p.D468D	.	.	.
NEUROD1	4760	broad.mit.edu	36	2	182251008	182251008	+	Silent	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002500	exon2	c.G825A	p.P275P	.	.	.
SDPR	8436	broad.mit.edu	36	2	192409646	192409646	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004657	exon2	c.G526A	p.V176I	.	.	.
FZD7	8324	broad.mit.edu	36	2	202608998	202608998	+	Silent	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003507	exon1	c.C1383T	p.T461T	.	.	.
ERBB4	2066	broad.mit.edu	36	2	212697816	212697816	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_005235	exon2	c.G140T	p.R47L	.	.	.
MFSD2B	388931	broad.mit.edu	36	2	24093918	24093918	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080473	exon6	c.G637A	p.E213K	.	.	.
C2orf86	51057	broad.mit.edu	36	2	63462548	63462548	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015910	exon11	c.G1621A	p.E541K	.	.	.
PROKR1	10887	broad.mit.edu	36	2	68735967	68735967	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_138964	exon2	c.G937A	p.V313M	.	.	.
OR13C5	138799	broad.mit.edu	36	9	106400699	106400699	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004482	exon1	c.T817A	p.L273M	.	.	.
PAPPA	5069	broad.mit.edu	36	9	118037622	118037622	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_002581	exon7	c.G2617A	p.A873T	.	.	.
CIZ1	25792	broad.mit.edu	36	9	129971577	129971577	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001131015	exon14	c.C1906T	p.R636C	.	.	.
DDX58	23586	broad.mit.edu	36	9	32481320	32481320	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014314	exon5	c.G670A	p.E224K	.	.	.
ROR2	4920	broad.mit.edu	36	9	93526974	93526974	+	Silent	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004560	exon9	c.C1623T	p.G541G	.	.	.
LAMC3	10319	broad.mit.edu	36	9	132950927	132950927	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-3982-01	TCGA-AA-3982-01			C	C	C	C	Unknown	Wildtype	None	Phase_I	Unspecified	454			Illumina	NM_006059	exon25	c.4226delC	p.A1409fs	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77390597	77390597	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001122659	exon1	c.C113T	p.P38L	.	.	.
SLITRK5	26050	broad.mit.edu	36	13	87127273	87127273	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_015567	exon2	c.G1629T	p.L543F	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55808593	55808593	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001142767	exon4	c.G273C	p.K91N	.	.	.
IDE	3416	broad.mit.edu	36	10	94213522	94213522	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004969	exon21	c.G2707A	p.E903K	.	.	.
NOLC1	9221	broad.mit.edu	36	10	103909022	103909023	+	Frame_Shift_Del	DEL	AG	-	-	novel		TCGA-AA-3982-01	TCGA-AA-3982-01			AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_004741	exon6	c.690_691del	p.230_231del	.	.	.
WDR36	134430	broad.mit.edu	36	5	110487732	110487732	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_139281	exon21	c.G2464C	p.A822P	.	.	.
APC	324	broad.mit.edu	36	5	112179160	112179160	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon7	c.C850T	p.R284X	APC,large_intestine,colon,Substitution - Nonsense,0	.	.
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001127511	exon14	c.C4294T	p.R1432X	APC,large_intestine,rectum,Substitution - Nonsense,0	.	.
SNX2	6643	broad.mit.edu	36	5	122191175	122191175	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_003100	exon14	c.C1444T	p.R482X	.	.	.
PCDHA1	56147	broad.mit.edu	36	5	140147915	140147915	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_031410	exon1	c.G1856A	p.R619H	.	.	.
FAM193B	54540	broad.mit.edu	36	5	176898536	176898536	+	Silent	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190946	exon2	c.G429A	p.Q143Q	.	.	.
MTMR12	54545	broad.mit.edu	36	5	32283979	32283979	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001040446	exon10	c.A907G	p.T303A	.	.	.
UGT3A2	167127	broad.mit.edu	36	5	36102588	36102588	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_001168316	exon1	c.G61C	p.E21Q	.	.	.
RAB3C	115827	broad.mit.edu	36	5	58057635	58057635	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Unspecified	454			Illumina	NM_138453	exon3	c.G302A	p.R101H	.	.	.
CHD1	1105	broad.mit.edu	36	5	98260045	98260045	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001270	exon11	c.G1495A	p.G499R	.	.	.
NBPF11	200030	broad.mit.edu	36	1	146709159	146709159	+	Silent	SNP	G	A	A	rs3977195	unknown	TCGA-AA-3982-01	TCGA-AA-3982-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
NBPF11	200030	broad.mit.edu	36	1	146713251	146713251	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-3982-01	TCGA-AA-3982-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
