Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
MUC2	4583	broad.mit.edu	36	11	1085318	1085319	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002457	exon33	c.6126_6127insC	p.K2042fs	.	.	.
TNFSF13	8741	broad.mit.edu	36	17	7403183	7403184	+	Frame_Shift_Ins	INS	-	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001198622	exon1	c.103_104insG	p.W35fs	.	.	.
STAB1	23166	broad.mit.edu	36	3	52522947	52522948	+	Frame_Shift_Ins	INS	-	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015136	exon32	c.3357_3358insC	p.L1119fs	.	.	.
ZNF518A	9849	broad.mit.edu	36	10	97909822	97909823	+	Frame_Shift_Ins	INS	-	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014803	exon6	c.3753_3754insA	p.S1251fs	.	.	.
MAPK12	6300	broad.mit.edu	36	22	49037204	49037205	+	Splice_Site	INS	-	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
EXOC3L	283849	broad.mit.edu	36	16	65778290	65778291	+	Splice_Site	INS	-	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	.	.	.	.	.	.	.
MLL5	55904	broad.mit.edu	36	7	104506641	104506641	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182931	exon12	c.G1243A	p.A415T	.	.	.
LAMB1	3912	broad.mit.edu	36	7	107367747	107367747	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002291	exon25	c.C3684T	p.S1228S	.	.	.
LRRN3	54674	broad.mit.edu	36	7	110551332	110551332	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018334	exon2	c.T1268A	p.I423K	.	.	.
TAS2R16	50833	broad.mit.edu	36	7	122422434	122422434	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016945	exon1	c.G491T	p.S164I	.	.	.
LMOD2	442721	broad.mit.edu	36	7	123089156	123089156	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207163	exon2	c.G280A	p.E94K	.	.	.
CCDC136	64753	broad.mit.edu	36	7	128241998	128241998	+	Missense_Mutation	SNP	G	T	T	rs61730244	unknown	TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022742	exon15	c.G2834T	p.R945L	.	.	.
WDR91	29062	broad.mit.edu	36	7	134542467	134542467	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014149	exon4	c.C539T	p.A180V	.	.	.
NUP205	23165	broad.mit.edu	36	7	134920276	134920276	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015135	exon8	c.T1199A	p.L400H	.	.	.
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0	.	.
SNX8	29886	broad.mit.edu	36	7	2281376	2281376	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013321	exon3	c.G315A	p.S105S	.	.	.
CARD11	84433	broad.mit.edu	36	7	2923483	2923483	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032415	exon20	c.G2670A	p.S890S	.	.	.
ANLN	54443	broad.mit.edu	36	7	36428813	36428813	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018685	exon14	c.C2346T	p.N782N	.	.	.
VPS41	27072	broad.mit.edu	36	7	38801732	38801732	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014396	exon9	c.T575C	p.V192A	.	.	.
COBL	23242	broad.mit.edu	36	7	51063163	51063163	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015198	exon10	c.C3124T	p.R1042C	.	.	.
SEPT14	346288	broad.mit.edu	36	7	55854349	55854349	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207366	exon7	c.T782C	p.V261A	.	.	.
GBAS	2631	broad.mit.edu	36	7	56013558	56013558	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001483	exon3	c.G254A	p.C85Y	.	.	.
VKORC1L1	154807	broad.mit.edu	36	7	65056637	65056637	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173517	exon3	c.A446G	p.N149S	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98401323	98401323	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003496	exon47	c.A6970G	p.M2324V	.	.	.
FLNC	2318	broad.mit.edu	36	7	128271991	128271991	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001458	exon21	c.3236delC	p.T1079fs	.	.	.
DSTN	11034	broad.mit.edu	36	20	17529651	17529651	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006870	exon2	c.C272T	p.T91I	.	.	.
NAPB	63908	broad.mit.edu	36	20	23306123	23306123	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022080	exon11	c.G787A	p.V263M	.	.	.
GDAP1L1	78997	broad.mit.edu	36	20	42341115	42341115	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024034	exon6	c.T865C	p.Y289H	.	.	.
ZMYND8	23613	broad.mit.edu	36	20	45298631	45298631	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012408	exon16	c.C2564T	p.T855M	.	.	.
B4GALT5	9334	broad.mit.edu	36	20	47696944	47696944	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004776	exon3	c.C329T	p.A110V	.	.	.
NFATC2	4773	broad.mit.edu	36	20	49574012	49574012	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012340	exon2	c.G175A	p.A59T	.	.	.
ATP9A	10079	broad.mit.edu	36	20	49706962	49706962	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006045	exon14	c.C1428T	p.N476N	.	.	.
TUBB1	81027	broad.mit.edu	36	20	57032995	57032995	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030773	exon4	c.C1118T	p.A373V	.	.	.
TRMT6	51605	broad.mit.edu	36	20	5878927	5878927	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015939	exon1	c.G125A	p.R42K	.	.	.
KLC1	3831	broad.mit.edu	36	14	103206370	103206370	+	Silent	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130107	exon7	c.A984G	p.E328E	.	.	.
ARHGEF40	55701	broad.mit.edu	36	14	20614616	20614616	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018071	exon7	c.C1891A	p.L631I	.	.	.
RPGRIP1	57096	broad.mit.edu	36	14	20832797	20832797	+	Silent	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020366	exon2	c.T207C	p.D69D	.	.	.
C14orf93	60686	broad.mit.edu	36	14	22527031	22527031	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130708	exon6	c.G1118A	p.R373H	.	.	.
IL25	64806	broad.mit.edu	36	14	22914883	22914883	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022789	exon2	c.G488A	p.R163H	.	.	.
MYH7	4625	broad.mit.edu	36	14	22969979	22969979	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000257	exon10	c.T866C	p.I289T	.	.	.
AP1G2	8906	broad.mit.edu	36	14	23105334	23105334	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003917	exon4	c.G464A	p.R155H	.	.	.
C14orf126	112487	broad.mit.edu	36	14	30987234	30987234	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080664	exon3	c.C359T	p.S120F	.	.	.
LRFN5	145581	broad.mit.edu	36	14	41426444	41426444	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152447	exon3	c.T866G	p.I289S	.	.	.
FANCM	57697	broad.mit.edu	36	14	44722758	44722758	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020937	exon17	c.A4418T	p.N1473I	.	.	.
PPIL5	122769	broad.mit.edu	36	14	49144322	49144322	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152329	exon3	c.G737A	p.C246Y	.	.	.
SDCCAG1	9147	broad.mit.edu	36	14	49368681	49368681	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004713	exon9	c.T800C	p.I267T	.	.	.
SAMD4A	23034	broad.mit.edu	36	14	54306676	54306676	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015589	exon8	c.T1698A	p.Y566X	.	.	.
DLGAP5	9787	broad.mit.edu	36	14	54705918	54705918	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001146015	exon12	c.G1500A	p.E500E	.	.	.
ARID4A	5926	broad.mit.edu	36	14	57901416	57901416	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023000	exon20	c.C2856T	p.I952I	.	.	.
DACT1	51339	broad.mit.edu	36	14	58183564	58183564	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079520	exon4	c.C2359T	p.R787C	.	.	.
RBM25	58517	broad.mit.edu	36	14	72650763	72650763	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021239	exon18	c.C2408T	p.S803L	.	.	.
LTBP2	4053	broad.mit.edu	36	14	74089353	74089353	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000428	exon5	c.G1187A	p.R396H	.	.	.
YLPM1	56252	broad.mit.edu	36	14	74365725	74365725	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019589	exon19	c.G6220A	p.A2074T	.	.	.
TSHR	7253	broad.mit.edu	36	14	80679642	80679642	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000369	exon10	c.C1487T	p.T496M	.	.	.
EML5	161436	broad.mit.edu	36	14	88156905	88156905	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183387	exon38	c.C5321T	p.S1774F	.	.	.
EML5	161436	broad.mit.edu	36	14	88197773	88197773	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_183387	exon25	c.A3653G	p.K1218R	.	.	.
TTC8	123016	broad.mit.edu	36	14	88377239	88377239	+	Silent	SNP	C	A	A	rs71425331	unknown	TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198309	exon4	c.C405A	p.A135A	.	.	.
KCNK13	56659	broad.mit.edu	36	14	89720375	89720375	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022054	exon2	c.C502T	p.R168X	.	.	.
C14orf159	80017	broad.mit.edu	36	14	90712068	90712068	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102368	exon7	c.C645T	p.Y215Y	.	.	.
MICAL3	57553	broad.mit.edu	36	22	16748740	16748740	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136004	exon16	c.C2145T	p.A715A	.	.	.
SGSM1	129049	broad.mit.edu	36	22	23581358	23581358	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098497	exon7	c.C630T	p.H210H	.	.	.
KREMEN1	83999	broad.mit.edu	36	22	27863554	27863554	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039570	exon6	c.G856A	p.G286R	.	.	.
SEC14L3	266629	broad.mit.edu	36	22	29196052	29196052	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_174975	exon4	c.G188A	p.R63Q	.	.	.
SH3BP1	23616	broad.mit.edu	36	22	36369697	36369697	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018957	exon7	c.A574G	p.K192E	.	.	.
PACSIN2	11252	broad.mit.edu	36	22	41610500	41610500	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184971	exon6	c.G621C	p.K207N	.	.	.
TBC1D22A	25771	broad.mit.edu	36	22	45886109	45886109	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014346	exon12	c.C1371T	p.C457C	.	.	.
TUBGCP6	85378	broad.mit.edu	36	22	49001420	49001420	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020461	exon16	c.C3495T	p.S1165S	.	.	.
AP1M2	10053	broad.mit.edu	36	19	10550573	10550573	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005498	exon8	c.G883A	p.V295I	.	.	.
DOCK6	57572	broad.mit.edu	36	19	11217364	11217364	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020812	exon9	c.C898A	p.L300M	.	.	.
RAB3D	9545	broad.mit.edu	36	19	11307453	11307453	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004283	exon3	c.G235A	p.A79T	.	.	.
FARSA	2193	broad.mit.edu	36	19	12900175	12900175	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004461	exon7	c.C822T	p.H274H	.	.	.
CASP14	23581	broad.mit.edu	36	19	15027877	15027877	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012114	exon7	c.C706T	p.R236W	.	.	.
CYP4F12	66002	broad.mit.edu	36	19	15668842	15668842	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023944	exon13	c.G1522A	p.A508T	.	.	.
ZNF486	90649	broad.mit.edu	36	19	20168896	20168896	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052852	exon4	c.G377C	p.C126S	.	.	.
ZNF43	7594	broad.mit.edu	36	19	21783318	21783318	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003423	exon4	c.A1361G	p.Y454C	.	.	.
ZNF91	7644	broad.mit.edu	36	19	23336747	23336747	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003430	exon4	c.A874G	p.K292E	.	.	.
ZNF57	126295	broad.mit.edu	36	19	2868491	2868491	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173480	exon4	c.A872G	p.Y291C	.	.	.
ATP4A	495	broad.mit.edu	36	19	40746247	40746247	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000704	exon2	c.T35C	p.V12A	.	.	.
C19orf55	148137	broad.mit.edu	36	19	40949525	40949525	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001039887	exon8	c.C786T	p.A262A	.	.	.
RYR1	6261	broad.mit.edu	36	19	43707933	43707933	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001042723	exon70	c.C10562T	p.A3521V	.	.	.
SUPT5H	6829	broad.mit.edu	36	19	44656595	44656595	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003169	exon25	c.C2645T	p.P882L	.	.	.
CYP2A6	1548	broad.mit.edu	36	19	46043118	46043118	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000762	exon7	c.G1082T	p.R361I	.	.	.
CYP2S1	29785	broad.mit.edu	36	19	46401347	46401347	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030622	exon7	c.C1129T	p.R377W	.	.	.
ATP1A3	478	broad.mit.edu	36	19	47166389	47166389	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152296	exon17	c.C2409T	p.G803G	.	.	.
GSK3A	2931	broad.mit.edu	36	19	47435982	47435982	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019884	exon2	c.G436A	p.A146T	.	.	.
NPAS1	4861	broad.mit.edu	36	19	52227429	52227429	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002517	exon3	c.C412A	p.L138M	.	.	.
PIH1D1	55011	broad.mit.edu	36	19	54644647	54644647	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017916	exon3	c.C234T	p.P78P	.	.	.
NAPSA	9476	broad.mit.edu	36	19	55556767	55556767	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004851	exon4	c.C433T	p.R145W	.	.	.
ZNF765	91661	broad.mit.edu	36	19	58602885	58602885	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040185	exon4	c.G265T	p.D89Y	.	.	.
ZSCAN5B	342933	broad.mit.edu	36	19	61393673	61393673	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080456	exon4	c.G823A	p.V275I	.	.	.
ZNF530	348327	broad.mit.edu	36	19	62810268	62810268	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020880	exon3	c.C1563T	p.C521C	.	.	.
ZNF586	54807	broad.mit.edu	36	19	62982771	62982771	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017652	exon3	c.A1004G	p.H335R	.	.	.
ZNF256	10172	broad.mit.edu	36	19	63144504	63144504	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005773	exon3	c.A1484G	p.E495G	.	.	.
GTF2F1	2962	broad.mit.edu	36	19	6338491	6338491	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002096	exon5	c.G406A	p.E136K	.	.	.
TRIM28	10155	broad.mit.edu	36	19	63753175	63753175	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005762	exon15	c.C2154T	p.R718R	.	.	.
PRAM1	84106	broad.mit.edu	36	19	8469904	8469904	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032152	exon2	c.A788G	p.K263R	.	.	.
MUC16	94025	broad.mit.edu	36	19	8923792	8923792	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon3	c.C24654T	p.D8218D	.	.	.
MUC16	94025	broad.mit.edu	36	19	8949255	8949255	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024690	exon1	c.C3560G	p.T1187S	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100119865	100119865	+	Silent	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152564	exon3	c.T186C	p.I62I	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121289763	121289763	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021110	exon11	c.C1303T	p.R435W	.	.	.
DERL1	79139	broad.mit.edu	36	8	124105151	124105151	+	Silent	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024295	exon4	c.T340C	p.L114L	.	.	.
C8orf79	57604	broad.mit.edu	36	8	12908227	12908227	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020844	exon3	c.G145A	p.A49T	.	.	.
ASAP1	50807	broad.mit.edu	36	8	131142055	131142055	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018482	exon27	c.G3144A	p.T1048T	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139218665	139218665	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015912	exon19	c.G3922A	p.V1308I	.	.	.
ZNF34	80778	broad.mit.edu	36	8	145969625	145969625	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030580	exon6	c.T1513C	p.C505R	.	.	.
PCM1	5108	broad.mit.edu	36	8	17849094	17849094	+	Silent	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006197	exon7	c.T903C	p.A301A	.	.	.
ARHGEF10	9639	broad.mit.edu	36	8	1821263	1821263	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014629	exon11	c.G1165A	p.G389S	.	.	.
ARHGEF10	9639	broad.mit.edu	36	8	1864105	1864105	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014629	exon24	c.A2803G	p.M935V	.	.	.
POLR3D	661	broad.mit.edu	36	8	22161945	22161945	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001722	exon6	c.G493A	p.D165N	.	.	.
ENTPD4	9583	broad.mit.edu	36	8	23350454	23350454	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004901	exon10	c.A1312G	p.T438A	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2823703	2823703	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033225	exon55	c.G8405T	p.C2802F	.	.	.
LEPROTL1	23484	broad.mit.edu	36	8	30082897	30082897	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015344	exon4	c.G373A	p.D125N	.	.	.
TEX15	56154	broad.mit.edu	36	8	30824688	30824688	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031271	exon1	c.G1388T	p.S463I	.	.	.
PLEKHA2	59339	broad.mit.edu	36	8	38929988	38929988	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021623	exon9	c.G719A	p.R240H	.	.	.
ANK1	286	broad.mit.edu	36	8	41676173	41676173	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020475	exon23	c.G2512A	p.D838N	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48864078	48864078	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001081640	exon76	c.C10843T	p.Q3615X	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52498690	52498690	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_144651	exon14	c.C1793T	p.T598M	.	.	.
CHD7	55636	broad.mit.edu	36	8	61818165	61818165	+	Silent	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017780	exon2	c.C1620A	p.L540L	.	.	.
CRISPLD1	83690	broad.mit.edu	36	8	76089639	76089639	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031461	exon6	c.C664T	p.R222W	.	.	.
CDH17	1015	broad.mit.edu	36	8	95233406	95233406	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001144663	exon13	c.G1662A	p.T554T	.	.	.
ESRP1	54845	broad.mit.edu	36	8	95759663	95759663	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122827	exon13	c.G1696A	p.A566T	.	.	.
MTOR	2475	broad.mit.edu	36	1	11223131	11223131	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004958	exon11	c.C1602T	p.D534D	.	.	.
RHOC	389	broad.mit.edu	36	1	113047852	113047852	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175744	exon3	c.G93A	p.P31P	.	.	.
ARNT	405	broad.mit.edu	36	1	149053226	149053226	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001197325	exon19	c.G2016A	p.S672S	.	.	.
TCHH	7062	broad.mit.edu	36	1	150348830	150348830	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007113	exon2	c.C3487T	p.R1163C	.	.	.
S100A7L2	645922	broad.mit.edu	36	1	151676215	151676215	+	Silent	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001045479	exon3	c.C282A	p.T94T	.	.	.
S100A13	6284	broad.mit.edu	36	1	151865487	151865487	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005979	exon3	c.G86A	p.R29Q	.	.	.
GATAD2B	57459	broad.mit.edu	36	1	152057187	152057187	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020699	exon5	c.C682T	p.R228W	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153584307	153584307	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018489	exon20	c.C7567T	p.R2523C	.	.	.
PRCC	5546	broad.mit.edu	36	1	155023134	155023134	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005973	exon3	c.G627A	p.S209S	.	.	.
ETV3L	440695	broad.mit.edu	36	1	155335201	155335201	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004341	exon3	c.C407T	p.A136V	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156908559	156908559	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003126	exon11	c.C1402T	p.R468C	.	.	.
OR6N1	128372	broad.mit.edu	36	1	157002439	157002439	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005185	exon1	c.C658A	p.Q220K	.	.	.
OR6N2	81442	broad.mit.edu	36	1	157013236	157013236	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005278	exon1	c.C814T	p.R272X	.	.	.
IGSF9	57549	broad.mit.edu	36	1	158167125	158167125	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135050	exon14	c.C1794T	p.I598I	.	.	.
KCNJ10	3766	broad.mit.edu	36	1	158278362	158278362	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002241	exon2	c.C585T	p.C195C	.	.	.
LMX1A	4009	broad.mit.edu	36	1	163449601	163449601	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_177398	exon5	c.G570A	p.K190K	.	.	.
MAEL	84944	broad.mit.edu	36	1	165253812	165253812	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032858	exon10	c.C1033T	p.R345C	.	.	.
GPA33	10223	broad.mit.edu	36	1	165304797	165304797	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005814	exon3	c.G401A	p.R134H	.	.	.
METTL13	51603	broad.mit.edu	36	1	170026284	170026284	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014955	exon5	c.C1121T	p.P374L	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	174792316	174792316	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020318	exon2	c.C235A	p.L79I	.	.	.
ZNF648	127665	broad.mit.edu	36	1	180292675	180292675	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001009992	exon2	c.C1094T	p.P365L	.	.	.
TPR	7175	broad.mit.edu	36	1	184576849	184576849	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003292	exon29	c.C3954T	p.S1318S	.	.	.
FAM5C	339479	broad.mit.edu	36	1	188396523	188396523	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199051	exon7	c.G1082A	p.S361N	.	.	.
CD46	4179	broad.mit.edu	36	1	206001295	206001295	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153826	exon5	c.A554G	p.D185G	.	.	.
PROX1	5629	broad.mit.edu	36	1	212238178	212238178	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002763	exon2	c.C1677T	p.C559C	.	.	.
DEGS1	8560	broad.mit.edu	36	1	222444417	222444417	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003676	exon2	c.A598G	p.I200V	.	.	.
WNT4	54361	broad.mit.edu	36	1	22319394	22319394	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030761	exon5	c.G792A	p.P264P	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226546448	226546448	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052843	exon39	c.C10566T	p.C3522C	.	.	.
RAB4A	5867	broad.mit.edu	36	1	227501412	227501412	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004578	exon6	c.G511A	p.A171T	.	.	.
PGBD5	79605	broad.mit.edu	36	1	228559528	228559528	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024554	exon2	c.C287T	p.T96M	.	.	.
LUZP1	7798	broad.mit.edu	36	1	23292920	23292920	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033631	exon4	c.T422G	p.L141R	.	.	.
HEATR1	55127	broad.mit.edu	36	1	234783523	234783523	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018072	exon43	c.C6218T	p.T2073M	.	.	.
C1orf150	148823	broad.mit.edu	36	1	245793524	245793524	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_145278	exon3	c.G99A	p.M33I	.	.	.
ZDHHC18	84243	broad.mit.edu	36	1	27047709	27047709	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032283	exon3	c.C520T	p.R174W	.	.	.
WDTC1	23038	broad.mit.edu	36	1	27502824	27502824	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015023	exon14	c.G1591A	p.G531S	.	.	.
TSSK3	81629	broad.mit.edu	36	1	32601877	32601877	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052841	exon2	c.C240T	p.A80A	.	.	.
SYNC	81493	broad.mit.edu	36	1	32933196	32933196	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001161708	exon2	c.A1090G	p.T364A	.	.	.
CSF3R	1441	broad.mit.edu	36	1	36711727	36711727	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172313	exon6	c.G569A	p.R190H	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37043424	37043424	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000831	exon15	c.C2316T	p.G772G	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37119057	37119057	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000831	exon3	c.C315T	p.G105G	.	.	.
JAK1	3716	broad.mit.edu	36	1	65105199	65105199	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002227	exon7	c.G928A	p.V310I	.	.	.
SGIP1	84251	broad.mit.edu	36	1	66957633	66957633	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032291	exon19	c.A1699G	p.T567A	.	.	.
ST6GALNAC3	256435	broad.mit.edu	36	1	76650464	76650464	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152996	exon3	c.G397A	p.V133I	.	.	.
AK5	26289	broad.mit.edu	36	1	77655916	77655916	+	Silent	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012093	exon8	c.A909G	p.S303S	.	.	.
TNFRSF9	3604	broad.mit.edu	36	1	7917704	7917704	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001561	exon7	c.C500T	p.P167L	.	.	.
SYDE2	84144	broad.mit.edu	36	1	85402964	85402964	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032184	exon6	c.T2918C	p.M973T	.	.	.
HFM1	164045	broad.mit.edu	36	1	91515161	91515161	+	Silent	SNP	A	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017975	exon31	c.T3438G	p.L1146L	.	.	.
SNX7	51375	broad.mit.edu	36	1	98923038	98923038	+	De_novo_Start_InFrame	SNP	T	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152238	exon2	c.T190A	p.L64M	.	.	.
LPPR4	9890	broad.mit.edu	36	1	99544806	99544806	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014839	exon7	c.G1944A	p.K648K	.	.	.
FRRS1	391059	broad.mit.edu	36	1	99980393	99980393	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001013660	exon5	c.G358T	p.A120S	.	.	.
ST6GALNAC5	81849	broad.mit.edu	36	1	77282727	77282727	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030965	exon3	c.512delG	p.W171fs	.	.	.
DDI1	414301	broad.mit.edu	36	11	103413082	103413082	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001711	exon1	c.C322T	p.R108C	.	.	.
ROBO4	54538	broad.mit.edu	36	11	124269317	124269317	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019055	exon8	c.C1308T	p.C436C	.	.	.
SRPR	6734	broad.mit.edu	36	11	125639493	125639493	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177842	exon11	c.C1593T	p.A531A	.	.	.
PRDM10	56980	broad.mit.edu	36	11	129290101	129290101	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020228	exon18	c.G2561A	p.R854Q	.	.	.
SOX6	55553	broad.mit.edu	36	11	16028043	16028043	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033326	exon11	c.G1269T	p.Q423H	.	.	.
SLC5A12	159963	broad.mit.edu	36	11	26681751	26681751	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178498	exon6	c.A724C	p.T242P	.	.	.
CHST1	8534	broad.mit.edu	36	11	45628713	45628713	+	Silent	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003654	exon4	c.C337A	p.R113R	.	.	.
OR51M1	390059	broad.mit.edu	36	11	5367413	5367413	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004756	exon1	c.C209A	p.P70H	.	.	.
OR5D16	390144	broad.mit.edu	36	11	55363568	55363568	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005496	exon1	c.C765T	p.G255G	.	.	.
OR5W2	390148	broad.mit.edu	36	11	55438395	55438395	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001001960	exon1	c.G240T	p.K80N	.	.	.
GANAB	23193	broad.mit.edu	36	11	62153338	62153338	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198335	exon17	c.G1906A	p.V636M	.	.	.
PPFIA1	8500	broad.mit.edu	36	11	69850507	69850507	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003626	exon7	c.A865T	p.T289S	.	.	.
MOGAT2	80168	broad.mit.edu	36	11	75116803	75116803	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025098	exon4	c.C616T	p.R206X	.	.	.
MOGAT2	80168	broad.mit.edu	36	11	75119889	75119889	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025098	exon6	c.C915T	p.H305H	.	.	.
CCDC81	60494	broad.mit.edu	36	11	85801099	85801099	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021827	exon10	c.G971A	p.R324Q	.	.	.
ANGPTL5	253935	broad.mit.edu	36	11	101267514	101267514	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178127	exon9	c.873delA	p.K291fs	.	.	.
SIM1	6492	broad.mit.edu	36	6	100945582	100945582	+	Silent	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005068	exon11	c.T1677C	p.H559H	.	.	.
CDC40	51362	broad.mit.edu	36	6	110645694	110645694	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015891	exon10	c.A1085C	p.E362A	.	.	.
FYN	2534	broad.mit.edu	36	6	112102428	112102428	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002037	exon13	c.G1372A	p.E458K	.	.	.
EPB41L2	2037	broad.mit.edu	36	6	131262340	131262340	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135555	exon8	c.A1220G	p.D407G	.	.	.
ECT2L	345930	broad.mit.edu	36	6	139177409	139177409	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001077706	exon4	c.T155A	p.L52X	.	.	.
GRM1	2911	broad.mit.edu	36	6	146392778	146392778	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114329	exon2	c.C432T	p.G144G	.	.	.
MTHFD1L	25902	broad.mit.edu	36	6	151311935	151311935	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015440	exon16	c.G1699A	p.D567N	.	.	.
TMEM181	57583	broad.mit.edu	36	6	158914497	158914497	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020823	exon2	c.C477T	p.V159V	.	.	.
SOD2	6648	broad.mit.edu	36	6	160025990	160025990	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024466	exon3	c.G292A	p.A98T	.	.	.
MAP3K4	4216	broad.mit.edu	36	6	161452975	161452975	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006724	exon23	c.C4364T	p.T1455I	.	.	.
FRMD1	79981	broad.mit.edu	36	6	168207277	168207277	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122841	exon6	c.C453T	p.T151T	.	.	.
HIST1H3E	8353	broad.mit.edu	36	6	26333694	26333694	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003532	exon1	c.C333T	p.C111C	.	.	.
RIPK1	8737	broad.mit.edu	36	6	3056144	3056144	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003804	exon9	c.C1685T	p.T562M	.	.	.
ABCF1	23	broad.mit.edu	36	6	30665472	30665472	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025091	exon21	c.G2060A	p.R687Q	.	.	.
MUC21	394263	broad.mit.edu	36	6	31062649	31062649	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010909	exon2	c.G718A	p.A240T	.	.	.
MUC21	394263	broad.mit.edu	36	6	31063400	31063400	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001010909	exon2	c.C1469T	p.A490V	.	.	.
HLA-DOB	3112	broad.mit.edu	36	6	32890916	32890916	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002120	exon2	c.C244T	p.P82S	.	.	.
ITPR3	3710	broad.mit.edu	36	6	33744828	33744828	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002224	exon18	c.G2106A	p.E702E	.	.	.
FGD2	221472	broad.mit.edu	36	6	37089512	37089512	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173558	exon5	c.G677A	p.R226H	.	.	.
MDGA1	266727	broad.mit.edu	36	6	37739729	37739729	+	Silent	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153487	exon2	c.C199A	p.R67R	.	.	.
MEA1	4201	broad.mit.edu	36	6	43088303	43088303	+	Silent	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014623	exon4	c.A441G	p.G147G	.	.	.
YIPF3	25844	broad.mit.edu	36	6	43589317	43589317	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015388	exon4	c.T428A	p.V143D	.	.	.
PKHD1	5314	broad.mit.edu	36	6	52037716	52037716	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170724	exon13	c.G972A	p.Q324Q	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73017487	73017487	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001168409	exon9	c.C694T	p.Q232X	.	.	.
CD109	135228	broad.mit.edu	36	6	74574529	74574529	+	Silent	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133493	exon26	c.T3192C	p.P1064P	.	.	.
TXNDC5	81567	broad.mit.edu	36	6	7836940	7836940	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_030810	exon5	c.G645A	p.P215P	.	.	.
NT5E	4907	broad.mit.edu	36	6	86251737	86251737	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002526	exon4	c.C817T	p.R273W	.	.	.
RNGTT	8732	broad.mit.edu	36	6	89695467	89695467	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003800	exon4	c.G323A	p.R108H	.	.	.
DDO	8528	broad.mit.edu	36	6	110820830	110820831	+	Frame_Shift_Del	DEL	CT	-	-	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003649	exon5	c.950_951del	p.317_317del	.	.	.
MYH8	4626	broad.mit.edu	36	17	10248614	10248614	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002472	exon22	c.T2446G	p.C816G	.	.	.
TOP3A	7156	broad.mit.edu	36	17	18146706	18146706	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004618	exon6	c.G556A	p.V186I	.	.	.
TRIM16L	147166	broad.mit.edu	36	17	18571619	18571619	+	Silent	SNP	T	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001037330	exon2	c.T24G	p.A8A	.	.	.
KIAA0100	9703	broad.mit.edu	36	17	23970009	23970009	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014680	exon32	c.G5750A	p.R1917Q	.	.	.
SUPT6H	6830	broad.mit.edu	36	17	24038479	24038479	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003170	exon23	c.G2869A	p.A957T	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26187113	26187113	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024857	exon2	c.G1888A	p.A630T	.	.	.
OR1G1	8390	broad.mit.edu	36	17	2977385	2977385	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003555	exon1	c.G211T	p.A71S	.	.	.
RDM1	201299	broad.mit.edu	36	17	31281340	31281340	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163122	exon1	c.C60T	p.G20G	.	.	.
C17orf78	284099	broad.mit.edu	36	17	32808950	32808950	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173625	exon2	c.C79T	p.R27X	.	.	.
CDK12	51755	broad.mit.edu	36	17	34902585	34902585	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016507	exon4	c.C2164T	p.R722C	.	.	.
WIPF2	147179	broad.mit.edu	36	17	35687968	35687968	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133264	exon8	c.C1288A	p.R430S	.	.	.
NKIRAS2	28511	broad.mit.edu	36	17	37428000	37428000	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017595	exon3	c.G152A	p.R51Q	.	.	.
ADAM11	4185	broad.mit.edu	36	17	40211064	40211064	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002390	exon25	c.T2204C	p.I735T	.	.	.
ANKFY1	51479	broad.mit.edu	36	17	4034967	4034967	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016376	exon12	c.G1594A	p.A532T	.	.	.
IMP5	162540	broad.mit.edu	36	17	41278921	41278921	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175882	exon1	c.G869T	p.G290V	.	.	.
CDC27	996	broad.mit.edu	36	17	42613948	42613948	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001114091	exon2	c.G82A	p.A28T	.	.	.
B4GALNT2	124872	broad.mit.edu	36	17	44596555	44596555	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153446	exon8	c.C1053T	p.T351T	.	.	.
RNF43	54894	broad.mit.edu	36	17	53789882	53789882	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017763	exon9	c.G2254A	p.A752T	.	.	.
PPM1D	8493	broad.mit.edu	36	17	56088979	56088979	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003620	exon5	c.G1255A	p.V419I	.	.	.
MARCH10	162333	broad.mit.edu	36	17	58232805	58232805	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001100875	exon2	c.G24A	p.R8R	.	.	.
DCAF7	10238	broad.mit.edu	36	17	59014716	59014716	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005828	exon5	c.G650A	p.R217Q	.	.	.
CACNG5	27091	broad.mit.edu	36	17	62311275	62311275	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014404	exon4	c.G605A	p.G202D	.	.	.
MAP2K6	5608	broad.mit.edu	36	17	65025284	65025284	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002758	exon4	c.C181T	p.R61X	.	.	.
SLC13A5	284111	broad.mit.edu	36	17	6539932	6539932	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143838	exon7	c.G892A	p.A298T	.	.	.
ALOX12	239	broad.mit.edu	36	17	6845831	6845831	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000697	exon8	c.C1138A	p.P380T	.	.	.
TNFSF12	8742	broad.mit.edu	36	17	7401155	7401155	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003809	exon7	c.G514A	p.G172R	.	.	.
CNTROB	116840	broad.mit.edu	36	17	7789797	7789797	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_053051	exon13	c.C1761T	p.P587P	.	.	.
TNRC6C	57690	broad.mit.edu	36	17	73575595	73575595	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018996	exon6	c.2774delA	p.Q925fs	.	.	.
CLDN8	9073	broad.mit.edu	36	21	30509481	30509481	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199328	exon1	c.G634A	p.G212R	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31539780	31539780	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003253	exon7	c.C1479T	p.H493H	.	.	.
C21orf59	56683	broad.mit.edu	36	21	32897441	32897441	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021254	exon5	c.G567A	p.A189A	.	.	.
MX2	4600	broad.mit.edu	36	21	41670811	41670811	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002463	exon2	c.C108T	p.F36F	.	.	.
PRMT2	3275	broad.mit.edu	36	21	46894001	46894001	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001535	exon6	c.C576T	p.Y192Y	.	.	.
XYLT1	64131	broad.mit.edu	36	16	17119267	17119267	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022166	exon11	c.A2294G	p.E765G	.	.	.
C16orf62	57020	broad.mit.edu	36	16	19556449	19556449	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020314	exon20	c.C1935T	p.H645H	.	.	.
COG7	91949	broad.mit.edu	36	16	23322534	23322534	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153603	exon13	c.G1785A	p.L595L	.	.	.
PLK1	5347	broad.mit.edu	36	16	23602830	23602830	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005030	exon5	c.C955A	p.L319M	.	.	.
ERN2	10595	broad.mit.edu	36	16	23613743	23613743	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033266	exon17	c.G2051A	p.R684Q	.	.	.
ERN2	10595	broad.mit.edu	36	16	23614787	23614787	+	Silent	SNP	G	A	A	rs61730173	unknown	TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033266	exon14	c.C1683T	p.T561T	.	.	.
SLC5A11	115584	broad.mit.edu	36	16	24788773	24788773	+	Silent	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052944	exon4	c.C258A	p.G86G	.	.	.
ATXN2L	11273	broad.mit.edu	36	16	28753225	28753225	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148415	exon17	c.C2233T	p.R745W	.	.	.
ZNF689	115509	broad.mit.edu	36	16	30523548	30523548	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138447	exon3	c.C1041T	p.C347C	.	.	.
MYST1	84148	broad.mit.edu	36	16	31049608	31049608	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032188	exon10	c.C1198A	p.L400M	.	.	.
ZNF423	23090	broad.mit.edu	36	16	48217625	48217625	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015069	exon6	c.G3534T	p.E1178D	.	.	.
CHD9	80205	broad.mit.edu	36	16	51895438	51895438	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025134	exon31	c.G6019A	p.A2007T	.	.	.
CES5A	221223	broad.mit.edu	36	16	54463103	54463103	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143685	exon3	c.T352C	p.S118P	.	.	.
MT1G	4495	broad.mit.edu	36	16	55258296	55258296	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005950	exon3	c.C182T	p.A61V	.	.	.
GPR97	222487	broad.mit.edu	36	16	56271948	56271948	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170776	exon8	c.A799T	p.I267F	.	.	.
CDH11	1009	broad.mit.edu	36	16	63573546	63573546	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001797	exon8	c.A1159G	p.S387G	.	.	.
CES2	8824	broad.mit.edu	36	16	65533607	65533607	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198061	exon9	c.G1428A	p.A476A	.	.	.
LRRC36	55282	broad.mit.edu	36	16	65962600	65962600	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018296	exon9	c.C1448T	p.A483V	.	.	.
NUDT7	283927	broad.mit.edu	36	16	76316853	76316853	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001105663	exon2	c.G60A	p.K20K	.	.	.
PLCG2	5336	broad.mit.edu	36	16	80499594	80499594	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002661	exon17	c.G1630A	p.E544K	.	.	.
KIAA1609	57707	broad.mit.edu	36	16	83078008	83078008	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020947	exon5	c.C688A	p.L230M	.	.	.
ZCCHC14	23174	broad.mit.edu	36	16	86004186	86004186	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015144	exon11	c.G1309A	p.D437N	.	.	.
USP7	7874	broad.mit.edu	36	16	8924652	8924652	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003470	exon3	c.A304C	p.M102L	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9842064	9842064	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001134408	exon7	c.C1592T	p.T531M	.	.	.
AXIN1	8312	broad.mit.edu	36	16	336793	336793	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003502	exon2	c.234delC	p.P78fs	.	.	.
ACD	65057	broad.mit.edu	36	16	66251147	66251149	+	In_Frame_Del	DEL	GCA	-	-	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001082486	exon3	c.551_553del	p.184_185del	.	.	.
CTAGE1	64693	broad.mit.edu	36	18	18250091	18250091	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_172241	exon1	c.C1682T	p.A561V	.	.	.
RTTN	25914	broad.mit.edu	36	18	66017648	66017648	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_173630	exon5	c.T560C	p.V187A	.	.	.
YES1	7525	broad.mit.edu	36	18	741800	741800	+	Silent	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005433	exon3	c.T276C	p.G92G	.	.	.
FILIP1L	11259	broad.mit.edu	36	3	101050441	101050441	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182909	exon5	c.C2769T	p.T923T	.	.	.
DZIP3	9666	broad.mit.edu	36	3	109863440	109863440	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014648	exon20	c.C2226T	p.D742D	.	.	.
SIDT1	54847	broad.mit.edu	36	3	114804643	114804643	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017699	exon12	c.A1219G	p.T407A	.	.	.
POGLUT1	56983	broad.mit.edu	36	3	120681615	120681615	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152305	exon5	c.C484T	p.P162S	.	.	.
FAM162A	26355	broad.mit.edu	36	3	123611355	123611355	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014367	exon5	c.C452T	p.A151V	.	.	.
SEMA5B	54437	broad.mit.edu	36	3	124113808	124113808	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031702	exon19	c.C2797T	p.R933C	.	.	.
EPHB1	2047	broad.mit.edu	36	3	136334483	136334483	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004441	exon5	c.C1199T	p.T400I	.	.	.
PLOD2	5352	broad.mit.edu	36	3	147271807	147271807	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000935	exon17	c.C1879T	p.R627W	.	.	.
SELT	51714	broad.mit.edu	36	3	151827604	151827604	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016275	exon5	c.G581A	p.R194Q	.	.	.
IFT80	57560	broad.mit.edu	36	3	161481186	161481186	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001190242	exon14	c.G1216A	p.D406N	.	.	.
PPM1L	151742	broad.mit.edu	36	3	162269499	162269499	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139245	exon4	c.C943T	p.R315X	.	.	.
GALNTL2	117248	broad.mit.edu	36	3	16243977	16243977	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_054110	exon10	c.G1886A	p.R629H	.	.	.
OXNAD1	92106	broad.mit.edu	36	3	16311410	16311410	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138381	exon6	c.T334C	p.S112P	.	.	.
ZBBX	79740	broad.mit.edu	36	3	168534309	168534309	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024687	exon10	c.G687T	p.E229D	.	.	.
WDR49	151790	broad.mit.edu	36	3	168760621	168760621	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178824	exon5	c.C576T	p.N192N	.	.	.
SLC2A2	6514	broad.mit.edu	36	3	172210516	172210516	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000340	exon4	c.T421G	p.L141V	.	.	.
CRYGS	1427	broad.mit.edu	36	3	187739314	187739314	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017541	exon3	c.G402T	p.E134D	.	.	.
MASP1	5648	broad.mit.edu	36	3	188463032	188463032	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001031849	exon3	c.G408A	p.M136I	.	.	.
OSBPL10	114884	broad.mit.edu	36	3	31764550	31764550	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017784	exon5	c.G796A	p.G266S	.	.	.
MLH1	4292	broad.mit.edu	36	3	37013118	37013118	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000249	exon2	c.G121T	p.D41Y	.	.	.
DLEC1	9940	broad.mit.edu	36	3	38102854	38102854	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007337	exon9	c.G1554A	p.W518X	.	.	.
DLEC1	9940	broad.mit.edu	36	3	38138914	38138914	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007337	exon36	c.G5151A	p.P1717P	.	.	.
ZDHHC3	51304	broad.mit.edu	36	3	44950470	44950470	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135179	exon4	c.C442T	p.R148W	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4853493	4853493	+	Silent	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099952	exon58	c.C7920A	p.A2640A	.	.	.
IP6K2	51447	broad.mit.edu	36	3	48705462	48705462	+	Silent	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016291	exon3	c.T357C	p.H119H	.	.	.
RHOA	387	broad.mit.edu	36	3	49380936	49380936	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001664	exon3	c.T206C	p.L69P	.	.	.
ARL8B	55207	broad.mit.edu	36	3	5189397	5189397	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018184	exon4	c.T344C	p.L115P	.	.	.
NISCH	11188	broad.mit.edu	36	3	52496315	52496315	+	Silent	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_007184	exon16	c.C1767A	p.P589P	.	.	.
ITIH1	3697	broad.mit.edu	36	3	52793487	52793487	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166434	exon9	c.G935A	p.R312Q	.	.	.
ITIH3	3699	broad.mit.edu	36	3	52813028	52813028	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002217	exon14	c.C1827T	p.N609N	.	.	.
SFMBT1	51460	broad.mit.edu	36	3	52941234	52941234	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001005158	exon7	c.G584A	p.R195H	.	.	.
ERC2	26059	broad.mit.edu	36	3	55708523	55708523	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015576	exon15	c.C2764T	p.H922Y	.	.	.
FEZF2	55079	broad.mit.edu	36	3	62330925	62330925	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018008	exon5	c.C1253T	p.T418M	.	.	.
SHQ1	55164	broad.mit.edu	36	3	72944568	72944568	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018130	exon9	c.G1004A	p.R335H	.	.	.
CNTN3	5067	broad.mit.edu	36	3	74631612	74631612	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020872	exon2	c.C70T	p.Q24X	.	.	.
ANO4	121601	broad.mit.edu	36	12	100001632	100001632	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178826	exon15	c.C1336T	p.R446W	.	.	.
KIAA1033	23325	broad.mit.edu	36	12	104055851	104055851	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015275	exon15	c.A1384G	p.M462V	.	.	.
POLR3B	55703	broad.mit.edu	36	12	105414815	105414815	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018082	exon25	c.C2973T	p.S991S	.	.	.
ANKRD13A	88455	broad.mit.edu	36	12	108959596	108959596	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033121	exon15	c.G1627A	p.A543T	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111152995	111152995	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001109662	exon39	c.G5699A	p.R1900H	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129492688	129492688	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015347	exon8	c.G1111A	p.V371I	.	.	.
TM7SF3	51768	broad.mit.edu	36	12	27018278	27018278	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016551	exon12	c.C1600A	p.P534T	.	.	.
REP15	387849	broad.mit.edu	36	12	27741338	27741338	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029874	exon1	c.G576A	p.L192L	.	.	.
LRRK2	120892	broad.mit.edu	36	12	38975685	38975685	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198578	exon23	c.T3068C	p.L1023P	.	.	.
SRSF2IP	9169	broad.mit.edu	36	12	44608778	44608778	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004719	exon11	c.C973T	p.R325C	.	.	.
ENDOU	8909	broad.mit.edu	36	12	46390920	46390920	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172439	exon10	c.T1165C	p.W389R	.	.	.
HDAC7	51564	broad.mit.edu	36	12	46468196	46468196	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001098416	exon19	c.G2143A	p.G715S	.	.	.
CCNT1	904	broad.mit.edu	36	12	47374449	47374449	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001240	exon9	c.G815A	p.R272Q	.	.	.
CCDC65	85478	broad.mit.edu	36	12	47597144	47597144	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033124	exon4	c.G595T	p.D199Y	.	.	.
FAM186B	84070	broad.mit.edu	36	12	48280224	48280224	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032130	exon4	c.G1466A	p.R489Q	.	.	.
TMPRSS12	283471	broad.mit.edu	36	12	49523893	49523893	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_182559	exon2	c.T189G	p.D63E	.	.	.
KRT79	338785	broad.mit.edu	36	12	51503246	51503246	+	Silent	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_175834	exon7	c.T1188C	p.R396R	.	.	.
AMHR2	269	broad.mit.edu	36	12	52104464	52104464	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001164691	exon2	c.C175T	p.R59C	.	.	.
SILV	6490	broad.mit.edu	36	12	54637571	54637571	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006928	exon6	c.C783T	p.D261D	.	.	.
SPRYD4	283377	broad.mit.edu	36	12	55149436	55149436	+	Silent	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_207344	exon2	c.T432C	p.G144G	.	.	.
RDH16	8608	broad.mit.edu	36	12	55632219	55632219	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003708	exon4	c.T815G	p.L272R	.	.	.
LRP1	4035	broad.mit.edu	36	12	55877142	55877142	+	Silent	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002332	exon56	c.C9003A	p.G3001G	.	.	.
INHBC	3626	broad.mit.edu	36	12	56129826	56129826	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005538	exon2	c.C813T	p.Y271Y	.	.	.
LRIG3	121227	broad.mit.edu	36	12	57552687	57552687	+	Silent	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153377	exon19	c.T3294C	p.C1098C	.	.	.
DYRK2	8445	broad.mit.edu	36	12	66337305	66337305	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003583	exon2	c.G132A	p.T44T	.	.	.
NUP107	57122	broad.mit.edu	36	12	67421920	67421920	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020401	exon27	c.C2563T	p.P855S	.	.	.
C3AR1	719	broad.mit.edu	36	12	8103035	8103035	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004054	exon2	c.C1014T	p.I338I	.	.	.
ANKS1B	56899	broad.mit.edu	36	12	98164201	98164201	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152788	exon13	c.A2329G	p.T777A	.	.	.
GABRA5	2558	broad.mit.edu	36	15	24679677	24679677	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001165037	exon6	c.G377A	p.S126N	.	.	.
SLTM	79811	broad.mit.edu	36	15	56967018	56967018	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024755	exon18	c.G2389A	p.V797I	.	.	.
RNF111	54778	broad.mit.edu	36	15	57146433	57146433	+	Silent	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017610	exon6	c.T1545C	p.H515H	.	.	.
MYO1E	4643	broad.mit.edu	36	15	57233200	57233200	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004998	exon26	c.C2961T	p.S987S	.	.	.
HERC1	8925	broad.mit.edu	36	15	61737831	61737831	+	Silent	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003922	exon48	c.C9564A	p.T3188T	.	.	.
TRIP4	9325	broad.mit.edu	36	15	62476879	62476879	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016213	exon4	c.G427A	p.V143I	.	.	.
CILP	8483	broad.mit.edu	36	15	63277032	63277032	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003613	exon9	c.G2645T	p.R882M	.	.	.
DIS3L	115752	broad.mit.edu	36	15	64412400	64412400	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143688	exon17	c.G2861A	p.R954K	.	.	.
CORO2B	10391	broad.mit.edu	36	15	66724563	66724563	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006091	exon2	c.G26A	p.R9H	.	.	.
TMC3	342125	broad.mit.edu	36	15	79418899	79418899	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080532	exon17	c.T1846C	p.S616P	.	.	.
BTBD1	53339	broad.mit.edu	36	15	81501486	81501486	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025238	exon4	c.C860T	p.A287V	.	.	.
ACAN	176	broad.mit.edu	36	15	87182935	87182935	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001135	exon3	c.G108A	p.P36P	.	.	.
POLG	5428	broad.mit.edu	36	15	87665382	87665382	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126131	exon17	c.C2712T	p.D904D	.	.	.
ANK2	287	broad.mit.edu	36	4	114494498	114494498	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001148	exon38	c.G5275A	p.E1759K	.	.	.
USP53	54532	broad.mit.edu	36	4	120389360	120389360	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019050	exon6	c.G247A	p.A83T	.	.	.
ANKRD50	57182	broad.mit.edu	36	4	125812540	125812540	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001167882	exon3	c.A805G	p.T269A	.	.	.
PHF17	79960	broad.mit.edu	36	4	130002433	130002433	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_199320	exon9	c.G1106A	p.S369N	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13210869	13210869	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_148894	exon10	c.C6753T	p.D2251D	.	.	.
OTUD4	54726	broad.mit.edu	36	4	146293205	146293205	+	Silent	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001102653	exon11	c.T711C	p.N237N	.	.	.
ARFIP1	27236	broad.mit.edu	36	4	153970308	153970308	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025593	exon2	c.C73T	p.R25C	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155461475	155461475	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017639	exon14	c.C3161A	p.S1054Y	.	.	.
RAPGEF2	9693	broad.mit.edu	36	4	160455256	160455256	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014247	exon3	c.G256A	p.E86K	.	.	.
DDX60L	91351	broad.mit.edu	36	4	169629627	169629627	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012967	exon4	c.A110G	p.N37S	.	.	.
GALNTL6	442117	broad.mit.edu	36	4	173971348	173971348	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001034845	exon7	c.A822C	p.Q274H	.	.	.
SNX25	83891	broad.mit.edu	36	4	186500250	186500250	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031953	exon12	c.C1681T	p.R561W	.	.	.
SLIT2	9353	broad.mit.edu	36	4	20207156	20207156	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004787	exon32	c.C3341A	p.S1114Y	.	.	.
APBB2	323	broad.mit.edu	36	4	40513003	40513003	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166050	exon18	c.C2140T	p.P714S	.	.	.
SLC30A9	10463	broad.mit.edu	36	4	41720129	41720129	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006345	exon6	c.G581A	p.R194H	.	.	.
LRRC66	339977	broad.mit.edu	36	4	52556849	52556849	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001024611	exon4	c.G1096T	p.G366C	.	.	.
LNX1	84708	broad.mit.edu	36	4	54069144	54069144	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001126328	exon3	c.G388A	p.G130S	.	.	.
UBA6	55236	broad.mit.edu	36	4	68225993	68225993	+	Nonsense_Mutation	SNP	G	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018227	exon6	c.C396G	p.Y132X	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79503795	79503795	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_025074	exon21	c.G2527A	p.V843I	.	.	.
ANTXR2	118429	broad.mit.edu	36	4	81124112	81124112	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001145794	exon14	c.A1123C	p.T375P	.	.	.
C4orf22	255119	broad.mit.edu	36	4	81723273	81723273	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152770	exon3	c.C245T	p.T82M	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87891218	87891218	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_080683	exon19	c.C3083T	p.A1028V	.	.	.
KLHL8	57563	broad.mit.edu	36	4	88318735	88318735	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020803	exon5	c.C1014A	p.C338X	.	.	.
MEPE	56955	broad.mit.edu	36	4	88985875	88985875	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184697	exon6	c.A492C	p.E164D	.	.	.
HERC3	8916	broad.mit.edu	36	4	89810079	89810079	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014606	exon15	c.T1679C	p.V560A	.	.	.
SMARCAD1	56916	broad.mit.edu	36	4	95418896	95418896	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001128429	exon18	c.T2285A	p.I762N	.	.	.
WDR1	9948	broad.mit.edu	36	4	9689689	9689689	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017491	exon12	c.G1319A	p.S440N	.	.	.
GPRASP2	114928	broad.mit.edu	36	X	101857711	101857711	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001004051	exon5	c.G1258A	p.G420R	.	.	.
TCEAL5	340543	broad.mit.edu	36	X	102415777	102415777	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001012979	exon3	c.C371T	p.T124M	.	.	.
H2BFWT	158983	broad.mit.edu	36	X	103154473	103154473	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001002916	exon1	c.G416A	p.R139Q	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107798232	107798232	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000495	exon41	c.G3632T	p.G1211V	.	.	.
GUCY2F	2986	broad.mit.edu	36	X	108595086	108595086	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001522	exon3	c.C973T	p.Q325X	.	.	.
AMOT	154796	broad.mit.edu	36	X	111909513	111909513	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133265	exon11	c.C1298A	p.S433X	.	.	.
AMELX	265	broad.mit.edu	36	X	11226823	11226823	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142	exon5	c.T379C	p.Y127H	.	.	.
ZBTB33	10009	broad.mit.edu	36	X	119272799	119272799	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006777	exon2	c.A1501G	p.R501G	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123381882	123381882	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014253	exon24	c.G4921A	p.A1641T	.	.	.
FRMPD4	9758	broad.mit.edu	36	X	12644355	12644355	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014728	exon15	c.A1856C	p.E619A	.	.	.
SMARCA1	6594	broad.mit.edu	36	X	128432924	128432924	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003069	exon20	c.A2503T	p.I835F	.	.	.
GABRE	2564	broad.mit.edu	36	X	150874557	150874557	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004961	exon8	c.C1076T	p.A359V	.	.	.
L1CAM	3897	broad.mit.edu	36	X	152782556	152782556	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001143963	exon24	c.C3418T	p.R1140C	.	.	.
ACE2	59272	broad.mit.edu	36	X	15509364	15509364	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021804	exon9	c.C971G	p.T324S	.	.	.
NHS	4810	broad.mit.edu	36	X	17654968	17654968	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001136024	exon7	c.G2290A	p.E764K	.	.	.
YY2	404281	broad.mit.edu	36	X	21785096	21785096	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_206923	exon1	c.C573T	p.N191N	.	.	.
XG	7499	broad.mit.edu	36	X	2710137	2710137	+	Missense_Mutation	SNP	A	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001141919	exon4	c.A158T	p.Y53F	.	.	.
DMD	1756	broad.mit.edu	36	X	32446166	32446166	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004006	exon18	c.G2172T	p.L724F	.	.	.
PORCN	64840	broad.mit.edu	36	X	48257587	48257587	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_203474	exon7	c.C717T	p.Y239Y	.	.	.
EBP	10682	broad.mit.edu	36	X	48267364	48267364	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006579	exon2	c.C261T	p.Y87Y	.	.	.
PRICKLE3	4007	broad.mit.edu	36	X	48921723	48921723	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006150	exon6	c.C610T	p.R204C	.	.	.
SHROOM4	57477	broad.mit.edu	36	X	50356501	50356501	+	Silent	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020717	exon9	c.C4416A	p.I1472I	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53579927	53579927	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031407	exon80	c.T12437C	p.M4146T	.	.	.
DLG3	1741	broad.mit.edu	36	X	69615760	69615760	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021120	exon10	c.C1441T	p.R481X	.	.	.
SNX12	29934	broad.mit.edu	36	X	70204747	70204747	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013346	exon1	c.G135A	p.A45A	.	.	.
FOXO4	4303	broad.mit.edu	36	X	70233110	70233110	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170931	exon1	c.C7G	p.P3A	.	.	.
TBX22	50945	broad.mit.edu	36	X	79170218	79170218	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001109878	exon8	c.C936T	p.G312G	.	.	.
FAM46D	169966	broad.mit.edu	36	X	79585180	79585180	+	Silent	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001170574	exon5	c.G486T	p.V162V	.	.	.
BRWD3	254065	broad.mit.edu	36	X	79871010	79871010	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153252	exon14	c.T1283C	p.M428T	.	.	.
CYLC1	1538	broad.mit.edu	36	X	83016146	83016146	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021118	exon4	c.G1774A	p.G592R	.	.	.
KLHL4	56062	broad.mit.edu	36	X	86767288	86767288	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_057162	exon6	c.G1160T	p.S387I	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91020733	91020733	+	Silent	SNP	T	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032968	exon2	c.T2838A	p.P946P	.	.	.
TSPAN6	7105	broad.mit.edu	36	X	99778289	99778289	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003270	exon1	c.T59C	p.V20A	.	.	.
CHST10	9486	broad.mit.edu	36	2	100389493	100389493	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004854	exon3	c.C77T	p.T26M	.	.	.
BUB1	699	broad.mit.edu	36	2	111129809	111129809	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004336	exon16	c.T1856C	p.V619A	.	.	.
GLI2	2736	broad.mit.edu	36	2	121458616	121458616	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005270	exon11	c.G1783A	p.V595I	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144991341	144991341	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001171653	exon2	c.A47G	p.K16R	.	.	.
RIF1	55183	broad.mit.edu	36	2	152028607	152028607	+	Nonsense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001177664	exon30	c.C4327T	p.R1443X	.	.	.
FIGN	55137	broad.mit.edu	36	2	164174858	164174858	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018086	exon3	c.G1730A	p.R577H	.	.	.
LRP2	4036	broad.mit.edu	36	2	169823839	169823839	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004525	exon17	c.C2455T	p.R819C	.	.	.
KLHL23	151230	broad.mit.edu	36	2	170314285	170314285	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199290	exon6	c.G1474T	p.A492S	.	.	.
PDE11A	50940	broad.mit.edu	36	2	178644696	178644696	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016953	exon1	c.T715C	p.S239P	.	.	.
TTN	7273	broad.mit.edu	36	2	179148527	179148527	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon154	c.C43382T	p.P14461L	.	.	.
TTN	7273	broad.mit.edu	36	2	179172821	179172821	+	Splice_Site	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003319	exon117	c.C28857T	p.C9619C	.	.	.
NCKAP1	10787	broad.mit.edu	36	2	183526137	183526137	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_013436	exon21	c.A2321G	p.Q774R	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196499495	196499495	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018897	exon22	c.G3512A	p.R1171Q	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208887330	208887330	+	Silent	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015040	exon14	c.T1764C	p.H588H	.	.	.
APOB	338	broad.mit.edu	36	2	21088995	21088995	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000384	exon26	c.C4250T	p.T1417M	.	.	.
FN1	2335	broad.mit.edu	36	2	215959925	215959925	+	Silent	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_212476	exon27	c.T4071C	p.G1357G	.	.	.
STK36	27148	broad.mit.edu	36	2	219246902	219246902	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015690	exon4	c.C282T	p.D94D	.	.	.
SCG2	7857	broad.mit.edu	36	2	224172035	224172035	+	Silent	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003469	exon2	c.T210C	p.H70H	.	.	.
UGT1A5	54579	broad.mit.edu	36	2	234341676	234341676	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001072	exon4	c.G1153A	p.V385I	.	.	.
HDLBP	3069	broad.mit.edu	36	2	241836177	241836177	+	Nonsense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005336	exon14	c.C1645T	p.Q549X	.	.	.
EPT1	85465	broad.mit.edu	36	2	26441282	26441282	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033505	exon3	c.G205A	p.A69T	.	.	.
HEATR5B	54497	broad.mit.edu	36	2	37156202	37156202	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019024	exon5	c.G527A	p.R176H	.	.	.
MSH6	2956	broad.mit.edu	36	2	47879319	47879319	+	Silent	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000179	exon4	c.A693G	p.V231V	.	.	.
PROKR1	10887	broad.mit.edu	36	2	68735636	68735636	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_138964	exon2	c.C606T	p.T202T	.	.	.
GKN1	56287	broad.mit.edu	36	2	69060629	69060629	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019617	exon5	c.C438T	p.S146S	.	.	.
ANKRD53	79998	broad.mit.edu	36	2	71060380	71060380	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001115116	exon3	c.G499A	p.V167M	.	.	.
RETSAT	54884	broad.mit.edu	36	2	85425310	85425310	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017750	exon7	c.A1174G	p.I392V	.	.	.
SMYD1	150572	broad.mit.edu	36	2	88148607	88148607	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_198274	exon1	c.C109T	p.R37W	.	.	.
REV1	51455	broad.mit.edu	36	2	99387523	99387523	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_016316	exon18	c.T2861C	p.V954A	.	.	.
AFF3	3899	broad.mit.edu	36	2	99537611	99537611	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001025108	exon22	c.G3376A	p.A1126T	.	.	.
STK11IP	114790	broad.mit.edu	36	2	220181562	220181562	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_052902	exon15	c.1650delC	p.R550fs	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100805575	100805575	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001855	exon8	c.C1085T	p.A362V	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108727797	108727797	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_021224	exon3	c.G1783A	p.A595T	.	.	.
KIAA0368	23392	broad.mit.edu	36	9	113224089	113224089	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001080398	exon16	c.C1922T	p.A641V	.	.	.
ROD1	9991	broad.mit.edu	36	9	114070260	114070260	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001163790	exon5	c.A334G	p.T112A	.	.	.
PAPPA	5069	broad.mit.edu	36	9	117989333	117989333	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_002581	exon2	c.C495A	p.N165K	.	.	.
DENND1A	57706	broad.mit.edu	36	9	125432551	125432551	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_024820	exon10	c.C644T	p.A215V	.	.	.
ANGPTL2	23452	broad.mit.edu	36	9	128910186	128910186	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_012098	exon2	c.C646T	p.P216S	.	.	.
ODF2	4957	broad.mit.edu	36	9	130286134	130286134	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153439	exon10	c.C1159T	p.R387C	.	.	.
SEC16A	9919	broad.mit.edu	36	9	138477870	138477870	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014866	exon11	c.G4513A	p.D1505N	.	.	.
BNC2	54796	broad.mit.edu	36	9	16426764	16426764	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017637	exon6	c.C1428A	p.C476X	.	.	.
LINGO2	158038	broad.mit.edu	36	9	27940347	27940347	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152570	exon7	c.G323A	p.R108H	.	.	.
DDX58	23586	broad.mit.edu	36	9	32447301	32447301	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014314	exon18	c.G2597A	p.R866Q	.	.	.
NOL6	65083	broad.mit.edu	36	9	33462349	33462349	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022917	exon2	c.G116A	p.R39H	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79124341	79124341	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001018037	exon41	c.G5230A	p.E1744K	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8723791	8723791	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040712	exon1	c.C53T	p.T18M	.	.	.
HEMGN	55363	broad.mit.edu	36	9	99733311	99733311	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_197978	exon3	c.C187T	p.R63C	.	.	.
PTCH1	5727	broad.mit.edu	36	9	97251370	97251370	+	Frame_Shift_Del	DEL	G	-	-	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001083605	exon22	c.3153delC	p.P1051fs	PTCH1,skin,NS,Substitution - Missense,-1	.	.
ITGBL1	9358	broad.mit.edu	36	13	101018064	101018064	+	Silent	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_004791	exon3	c.T330C	p.C110C	.	.	.
PCID2	55795	broad.mit.edu	36	13	112880596	112880596	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_018386	exon14	c.G1117A	p.V373I	.	.	.
ZMYM2	7750	broad.mit.edu	36	13	19554974	19554974	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_197968	exon23	c.G3622T	p.G1208X	.	.	.
XPO4	64328	broad.mit.edu	36	13	20294329	20294329	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022459	exon8	c.G940T	p.G314X	.	.	.
RNF6	6049	broad.mit.edu	36	13	25687541	25687541	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005977	exon5	c.A478G	p.R160G	.	.	.
FRY	10129	broad.mit.edu	36	13	31589540	31589540	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023037	exon4	c.T394C	p.Y132H	.	.	.
DGKH	160851	broad.mit.edu	36	13	41678220	41678220	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_178009	exon21	c.G2539A	p.V847M	.	.	.
FNDC3A	22862	broad.mit.edu	36	13	48675378	48675378	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001079673	exon25	c.A3239G	p.Y1080C	.	.	.
MLNR	2862	broad.mit.edu	36	13	48694332	48694332	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001507	exon2	c.A1057G	p.I353V	.	.	.
SUGT1	10910	broad.mit.edu	36	13	52135242	52135242	+	Silent	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001130912	exon8	c.T489C	p.S163S	.	.	.
KLHL1	57626	broad.mit.edu	36	13	69179810	69179810	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020866	exon10	c.C2135T	p.T712I	.	.	.
CNNM1	26507	broad.mit.edu	36	10	101110668	101110668	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020348	exon3	c.C1804T	p.R602W	.	.	.
HIF1AN	55662	broad.mit.edu	36	10	102290436	102290436	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017902	exon3	c.T484G	p.F162V	.	.	.
GBF1	8729	broad.mit.edu	36	10	104009846	104009846	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199378	exon3	c.T146G	p.V49G	.	.	.
COL17A1	1308	broad.mit.edu	36	10	105813541	105813541	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000494	exon11	c.G792A	p.A264A	.	.	.
DCLRE1A	9937	broad.mit.edu	36	10	115592158	115592158	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014881	exon6	c.A2599G	p.T867A	.	.	.
PNLIP	5406	broad.mit.edu	36	10	118311040	118311040	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000936	exon12	c.G1236T	p.L412F	.	.	.
FAM24A	118670	broad.mit.edu	36	10	124662344	124662344	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029888	exon3	c.G202A	p.A68T	.	.	.
ACADSB	36	broad.mit.edu	36	10	124790798	124790798	+	Nonsense_Mutation	SNP	T	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001609	exon5	c.T594A	p.Y198X	.	.	.
CACNB2	783	broad.mit.edu	36	10	18856596	18856596	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_201596	exon10	c.G1018A	p.A340T	.	.	.
DIP2C	22982	broad.mit.edu	36	10	317145	317145	+	Silent	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_014974	exon36	c.G4413T	p.T1471T	.	.	.
PARD3	56288	broad.mit.edu	36	10	34660082	34660082	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001184787	exon19	c.G2811A	p.A937A	.	.	.
CHAT	1103	broad.mit.edu	36	10	50526597	50526597	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001142929	exon9	c.C966T	p.C322C	.	.	.
ANK3	288	broad.mit.edu	36	10	61626314	61626314	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_020987	exon15	c.G1765A	p.A589T	.	.	.
UNC5B	219699	broad.mit.edu	36	10	72716546	72716546	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_170744	exon5	c.G647A	p.R216H	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7287886	7287886	+	Silent	SNP	A	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001029880	exon12	c.T1341A	p.T447T	.	.	.
PLA2G12B	84647	broad.mit.edu	36	10	74384405	74384405	+	Silent	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032562	exon1	c.G45T	p.G15G	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93685403	93685403	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_003972	exon2	c.C24T	p.R8R	.	.	.
PDE6C	5146	broad.mit.edu	36	10	95385355	95385355	+	Nonsense_Mutation	SNP	A	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_006204	exon10	c.A1381T	p.K461X	.	.	.
ALDH18A1	5832	broad.mit.edu	36	10	97356655	97356655	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001017423	exon18	c.G2236A	p.A746T	.	.	.
MMS19	64210	broad.mit.edu	36	10	99215812	99215812	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_022362	exon17	c.C1600T	p.R534C	.	.	.
LZTS2	84445	broad.mit.edu	36	10	102752583	102752583	+	Frame_Shift_Del	DEL	C	-	-	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01							Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032429	exon2	c.298delC	p.P100fs	.	.	.
WDR36	134430	broad.mit.edu	36	5	110476730	110476730	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_139281	exon16	c.C1943A	p.T648N	.	.	.
DCP2	167227	broad.mit.edu	36	5	112377051	112377051	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_152624	exon11	c.A1234G	p.N412D	.	.	.
ADAMTS19	171019	broad.mit.edu	36	5	128889918	128889918	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_133638	exon4	c.G938T	p.R313I	.	.	.
PCDHA4	56144	broad.mit.edu	36	5	140168808	140168808	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031500	exon1	c.G1852A	p.A618T	.	.	.
PCDHB8	56128	broad.mit.edu	36	5	140538799	140538799	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_019120	exon1	c.G1000A	p.V334I	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140690697	140690697	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_031993	exon1	c.C262T	p.R88C	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140699205	140699205	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032009	exon1	c.C483T	p.D161D	.	.	.
TCERG1	10915	broad.mit.edu	36	5	145819042	145819042	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001040006	exon4	c.T841C	p.S281P	.	.	.
SYNPO	11346	broad.mit.edu	36	5	150008468	150008468	+	Silent	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001166208	exon3	c.G1170A	p.P390P	.	.	.
KIF4B	285643	broad.mit.edu	36	5	154377087	154377087	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001099293	exon1	c.C3475T	p.P1159S	.	.	.
ITK	3702	broad.mit.edu	36	5	156540603	156540603	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005546	exon1	c.A37G	p.K13E	.	.	.
NIPAL4	348938	broad.mit.edu	36	5	156832283	156832283	+	Missense_Mutation	SNP	T	C	C	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001172292	exon5	c.T1081C	p.Y361H	.	.	.
GABRB2	2561	broad.mit.edu	36	5	160696235	160696235	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	T	T					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_000813	exon7	c.A661C	p.K221Q	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167486365	167486365	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001122679	exon12	c.C2238T	p.H746H	.	.	.
CCDC99	54908	broad.mit.edu	36	5	168958592	168958592	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_017785	exon10	c.A1175G	p.Q392R	.	.	.
THOC3	84321	broad.mit.edu	36	5	175319693	175319693	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	G	G					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032361	exon6	c.C941T	p.A314V	.	.	.
UIMC1	51720	broad.mit.edu	36	5	176330356	176330356	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001199298	exon4	c.G350T	p.S117I	.	.	.
TRIM41	90933	broad.mit.edu	36	5	180584288	180584288	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_033549	exon1	c.C683A	p.P228H	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37231780	37231780	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_023073	exon21	c.G3748A	p.A1250T	.	.	.
DAB2	1601	broad.mit.edu	36	5	39418837	39418837	+	Silent	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_001343	exon10	c.G981A	p.S327S	.	.	.
CARD6	84674	broad.mit.edu	36	5	40888365	40888365	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_032587	exon3	c.C1174T	p.R392C	.	.	.
MAST4	375449	broad.mit.edu	36	5	66463513	66463513	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	C	C					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_015183	exon15	c.C1504T	p.H502Y	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79061303	79061303	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_153610	exon2	c.A959G	p.H320R	.	.	.
LNPEP	4012	broad.mit.edu	36	5	96340797	96340797	+	Silent	SNP	A	G	G	novel		TCGA-AA-A01P-01	TCGA-AA-A01P-01	A	A					Unknown	Unknown	Somatic	Phase_I	Unspecified				Illumina	NM_005575	exon2	c.A219G	p.S73S	.	.	.
