Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
EPHA1	2041	hgsc.bcm.edu	36	7	142805276	142805276	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005232	exon8	c.C1474T	p.R492W	.	.	.
GAL3ST4	79690	hgsc.bcm.edu	36	7	99596175	99596175	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024637	exon4	c.C773T	p.A258V	.	.	.
NINL	22981	hgsc.bcm.edu	36	20	25404725	25404725	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_025176	exon17	c.G3202A	p.V1068I	.	.	.
CECR1	51816	hgsc.bcm.edu	36	22	16070464	16070464	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017424	exon1	c.C104T	p.A35V	.	.	.
APOC2	344	hgsc.bcm.edu	36	19	50143936	50143936	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000483	exon3	c.C194T	p.P65L	.	.	.
CACNG8	59283	hgsc.bcm.edu	36	19	59177222	59177222	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031895	exon4	c.G585A	p.E195E	.	.	.
VPS13B	157680	hgsc.bcm.edu	36	8	100119860	100119860	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152564	exon3	c.C181T	p.H61Y	.	.	.
DLC1	10395	hgsc.bcm.edu	36	8	13001646	13001646	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182643	exon9	c.C2571T	p.S857S	.	.	.
CASZ1	54897	hgsc.bcm.edu	36	1	10642720	10642720	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079843	exon6	c.C966T	p.G322G	.	.	.
FLG	2312	hgsc.bcm.edu	36	1	150543423	150543423	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002016	exon3	c.C10563T	p.S3521S	.	.	.
FCRL2	79368	hgsc.bcm.edu	36	1	156004900	156004900	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030764	exon5	c.G811A	p.G271S	.	.	.
CRB1	23418	hgsc.bcm.edu	36	1	195663662	195663662	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_201253	exon7	c.C2584A	p.L862M	.	.	.
MAN1C1	57134	hgsc.bcm.edu	36	1	25980140	25980140	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020379	exon10	c.C1600T	p.R534X	.	.	.
WDTC1	23038	hgsc.bcm.edu	36	1	27495466	27495466	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015023	exon10	c.C936A	p.C312X	.	.	.
DEM1	64789	hgsc.bcm.edu	36	1	40753734	40753735	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	AA	AA	AA	-	AA	AA	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022774	exon3	c.931_932del	p.311_311del	.	.	.
P2RY6	5031	hgsc.bcm.edu	36	11	72685510	72685510	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_176798	exon4	c.G299A	p.R100H	.	.	.
SIM1	6492	hgsc.bcm.edu	36	6	100944967	100944967	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005068	exon11	c.C2292T	p.N764N	.	.	.
MED23	9439	hgsc.bcm.edu	36	6	131950556	131950556	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015979	exon30	c.C4081T	p.P1361S	.	.	.
KIAA0776	23376	hgsc.bcm.edu	36	6	97104091	97104091	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015323	exon14	c.C1603T	p.R535C	.	.	.
KCNJ12	3768	hgsc.bcm.edu	36	17	21260275	21260275	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	C	C	C	C	C	T	Unknown	Valid	LOH	Phase_I	Capture	454			SOLID	NM_021012	exon3	c.C1028T	p.S343L	.	.	.
KIAA0195	9772	hgsc.bcm.edu	36	17	71001487	71001487	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014738	exon18	c.G2302A	p.E768K	.	.	.
EIF5A	1984	hgsc.bcm.edu	36	17	7153832	7153832	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001143761	exon2	c.G154A	p.G52S	.	.	.
PRMT7	54496	hgsc.bcm.edu	36	16	66930861	66930861	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_019023	exon8	c.G640A	p.V214I	.	.	.
EEFSEC	60678	hgsc.bcm.edu	36	3	129466212	129466212	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021937	exon4	c.G684T	p.V228V	.	.	.
ACAD9	28976	hgsc.bcm.edu	36	3	130104104	130104104	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014049	exon9	c.A901G	p.N301D	.	.	.
IFT122	55764	hgsc.bcm.edu	36	3	130666267	130666267	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052990	exon5	c.G360A	p.P120P	.	.	.
ERP27	121506	hgsc.bcm.edu	36	12	14979094	14979094	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152321	exon3	c.A296G	p.Y99C	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
GEFT	115557	hgsc.bcm.edu	36	12	56296391	56296391	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001111270	exon15	c.G1595A	p.R532Q	.	.	.
E2F7	144455	hgsc.bcm.edu	36	12	75973853	75973853	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_203394	exon3	c.C282T	p.A94A	.	.	.
E2F7	144455	hgsc.bcm.edu	36	12	75973884	75973884	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_203394	exon3	c.C251A	p.T84K	.	.	.
FAT4	79633	hgsc.bcm.edu	36	4	126589839	126589839	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024582	exon9	c.G8218T	p.V2740F	.	.	.
POU4F2	5458	hgsc.bcm.edu	36	4	147781230	147781230	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004575	exon2	c.G1050A	p.T350T	.	.	.
FSTL5	56884	hgsc.bcm.edu	36	4	162595641	162595641	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020116	exon15	c.C1806A	p.F602L	.	.	.
TLL1	7092	hgsc.bcm.edu	36	4	167195830	167195830	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012464	exon13	c.C1677T	p.D559D	.	.	.
UGT2B7	7364	hgsc.bcm.edu	36	4	70003195	70003195	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001074	exon3	c.G952A	p.E318K	.	.	.
TFPI	7035	hgsc.bcm.edu	36	2	188057124	188057124	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006287	exon6	c.G600A	p.P200P	.	.	.
PIKFYVE	200576	hgsc.bcm.edu	36	2	208915560	208915560	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015040	exon32	c.C4969T	p.R1657X	.	.	.
NCOA1	8648	hgsc.bcm.edu	36	2	24749759	24749759	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003743	exon5	c.G277A	p.D93N	.	.	.
KIAA1539	80256	hgsc.bcm.edu	36	9	35098115	35098115	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_025182	exon3	c.T157C	p.F53L	.	.	.
DGKH	160851	hgsc.bcm.edu	36	13	41693478	41693478	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178009	exon29	c.G3521A	p.R1174H	.	.	.
ADAMTS14	140766	hgsc.bcm.edu	36	10	72181267	72181267	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_080722	exon17	c.C2455T	p.R819C	.	.	.
APC	324	hgsc.bcm.edu	36	5	112202959	112202959	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.G3715T	p.E1239X	.	.	.
HAPLN1	1404	hgsc.bcm.edu	36	5	82973197	82973197	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AG-3580-01	TCGA-AG-3580-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001884	exon5	c.C939T	p.S313S	.	.	.
