| GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.LAML.2012_05_25__00_00_08.samplestamp.txt |
| GDAC_CreateMergeDataFilesSDRF1 annotationid | rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data |
| GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues5851799580355893349.tsv |
| GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues4987169256571397958.tsv |
| GDAC_MergeDataFiles2 output filename | LAML |
| GDAC_MergeDataFiles2 row_column | column |
| GDAC_MergeDataFiles2 num_headers | 1 |
| GDAC_MergeDataFiles2 filetype | rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data.data |
| Execution Times: | |
| Submitted: | 07:21:55 27-05-12 |
| Completed: | |
| Elapsed: | 00 hrs 01 mins 46 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 102595] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
| samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.LAML.2012_05_25__00_00_08.samplestamp.txt |
| annotationid | rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data |
| sdrffilename | |
| datapathsfile | dependentsValues5851799580355893349.tsv |
| Output Files: | |
| dcc_archive.properties | |
| LAML.merger.sdrf.txt | |
| dcc_archive_manifest.tsv | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 07:21:56 27-05-12 |
| Completed: | 07:22:23 27-05-12 |
| Elapsed: | 00 hrs 00 mins 26 secs |
step 2. GDAC_MergeDataFiles [id: 102596] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
| inputfilelist filename | dependentsValues4987169256571397958.tsv |
| output filename | LAML |
| row_column | column |
| num_headers | 1 |
| filetype | rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data.data |
| Output Files: | |
| LAML.rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data.data.txt | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 07:21:56 27-05-12 |
| Completed: | 07:23:39 27-05-12 |
| Elapsed: | 00 hrs 01 mins 43 secs |