| GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.LUAD.2012_05_25__00_00_08.samplestamp.txt |
| GDAC_CreateMergeDataFilesSDRF1 annotationid | methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data |
| GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues1224724899646301256.tsv |
| GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues4537463104724218717.tsv |
| GDAC_MergeDataFiles2 output filename | LUAD |
| GDAC_MergeDataFiles2 row_column | column |
| GDAC_MergeDataFiles2 num_headers | 1 |
| GDAC_MergeDataFiles2 filetype | methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data |
| Execution Times: | |
| Submitted: | 07:42:25 27-05-12 |
| Completed: | |
| Elapsed: | 00 hrs 06 mins 24 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 102785] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
| samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.LUAD.2012_05_25__00_00_08.samplestamp.txt |
| annotationid | methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data |
| sdrffilename | |
| datapathsfile | dependentsValues1224724899646301256.tsv |
| Output Files: | |
| LUAD.merger.sdrf.txt | |
| dcc_archive.properties | |
| dcc_archive_manifest.tsv | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 07:42:26 27-05-12 |
| Completed: | 07:43:09 27-05-12 |
| Elapsed: | 00 hrs 00 mins 43 secs |
step 2. GDAC_MergeDataFiles [id: 102786] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
| inputfilelist filename | dependentsValues4537463104724218717.tsv |
| output filename | LUAD |
| row_column | column |
| num_headers | 1 |
| filetype | methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data |
| Output Files: | |
| LUAD.methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data.data.txt | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 07:42:26 27-05-12 |
| Completed: | 07:48:47 27-05-12 |
| Elapsed: | 00 hrs 06 mins 21 secs |