| GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.LUSC.2012_05_25__00_00_08.samplestamp.txt |
| GDAC_CreateMergeDataFilesSDRF1 annotationid | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg |
| GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues5078035462150007439.tsv |
| GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues6806997864224631216.tsv |
| GDAC_MergeDataFiles2 output filename | LUSC |
| GDAC_MergeDataFiles2 row_column | row |
| GDAC_MergeDataFiles2 num_headers | 1 |
| GDAC_MergeDataFiles2 filetype | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg |
| Execution Times: | |
| Submitted: | 07:53:15 27-05-12 |
| Completed: | |
| Elapsed: | 00 hrs 02 mins 50 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 102951] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
| samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.LUSC.2012_05_25__00_00_08.samplestamp.txt |
| annotationid | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg |
| sdrffilename | |
| datapathsfile | dependentsValues5078035462150007439.tsv |
| Output Files: | |
| LUSC.merger.sdrf.txt | |
| dcc_archive.properties | |
| dcc_archive_manifest.tsv | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 07:53:15 27-05-12 |
| Completed: | 07:54:24 27-05-12 |
| Elapsed: | 00 hrs 01 mins 08 secs |
step 2. GDAC_MergeDataFiles [id: 102952] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
| inputfilelist filename | dependentsValues6806997864224631216.tsv |
| output filename | LUSC |
| row_column | row |
| num_headers | 1 |
| filetype | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg |
| Output Files: | |
| LUSC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 07:53:15 27-05-12 |
| Completed: | 07:55:59 27-05-12 |
| Elapsed: | 00 hrs 02 mins 43 secs |