Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
TAS1R2	80834	genome.wustl.edu	37	1	19181044	19181044	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152232.2	-1	validated	p.D307V	0.998	45	0%	97	25.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ANF_receptor,superfamily_SSF53822
MIR1290	100302276	genome.wustl.edu	37	1	19223634	19223634	+	RNA	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408735	-1	known	NULL	0.000	20	0%	40	17.5%	0	-	-	-	-	-
UBR4	23352	genome.wustl.edu	37	1	19407898	19407898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.R5060W	1.000	90	0%	236	21.2%	89	48.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
EPHB2	2048	genome.wustl.edu	37	1	23111349	23111349	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004442.6	+1	reviewed	p.C197	1.000	12	0%	43	23.3%	8	50%	-	-	-	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,PatternScan_RECEPTOR_TYR_KIN_V_1
SDC3	9672	genome.wustl.edu	37	1	31349871	31349871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014654.3	-1	reviewed	p.R133H	0.810	6	0.000	32	0.281	20	45%	unknown(0)	tolerated(0.35)	-	HMMPfam_Syndecan
PUM1	9698	genome.wustl.edu	37	1	31418287	31418287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001020658.1	-1	reviewed	p.V967A	1.000	119	0%	227	22.5%	61	37.7%	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	HMMPfam_PUF,HMMSmart_SM00025,superfamily_ARM repeat
IQCC	55721	genome.wustl.edu	37	1	32673465	32673465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018134.2	+1	validated	p.L395I	0.048	63	0%	186	28%	9	55.5%	possibly_damaging(0.915)	tolerated(0.3)	neutral(0.395)	NULL
ZC3H12A	80149	genome.wustl.edu	37	1	37947390	37947390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025079.2	+1	validated	p.R258C	1.000	20	0%	64	34.4%	33	57.5%	possibly_damaging(0.691)	deleterious(0)	deleterious(0.692)	NULL
COL9A2	1298	genome.wustl.edu	37	1	40775613	40775613	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001852.3	-1	reviewed	p.D281	0.984	93	0%	236	22%	17	41.1%	-	-	-	HMMPfam_Collagen
EPS15	2060	genome.wustl.edu	37	1	51946946	51946946	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001981.2	-1	reviewed	p.Q25P	1.000	95	0%	202	26.2%	5	20%	probably_damaging(0.959)	deleterious(0.02)	deleterious(0.786)	HMMSmart_SM00027,superfamily_EF-hand
ZCCHC11	23318	genome.wustl.edu	37	1	52954689	52954689	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009881.1	-1	validated	p.V469	1.000	206	0%	382	28.8%	7	71.4%	-	-	-	superfamily_Nucleotidyltransferase
SLC1A7	6512	genome.wustl.edu	37	1	53558351	53558351	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006671.4	-1	validated	p.C302	0.306	37	0%	72	29.2%	0	-	-	-	-	HMMPfam_SDF
MRPL37	51253	genome.wustl.edu	37	1	54681841	54681841	+	Missense_Mutation	SNP	G	G	A	rs184402036	by1000genomes	TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016491.3	+1	reviewed	p.V340M	0.027	68	0%	175	27.4%	146	39.7%	possibly_damaging(0.682)	deleterious(0.01)	deleterious(0.649)	NULL
NEXN	91624	genome.wustl.edu	37	1	78392474	78392474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144573.3	+1	reviewed	p.L254P	0.996	331	0.3%	551	29%	2	0%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
MCOLN3	55283	genome.wustl.edu	37	1	85486955	85486955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018298.9	-1	validated	p.R442H	1.000	77	0%	178	24.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans
HIAT1	64645	genome.wustl.edu	37	1	100544103	100544103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033055.2	+1	validated	p.Q367H	0.997	108	0%	204	25%	54	57.4%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
KCNA2	3737	genome.wustl.edu	37	1	111147166	111147166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004974.2	-1	reviewed	p.R80L	1.000	65	0%	165	26.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_BTB,HMMPfam_K_tetra,superfamily_BTB/POZ_fold
MOV10	4343	genome.wustl.edu	37	1	113234346	113234346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130079.1	+1	validated	p.R299H	0.502	39	0%	111	29.7%	72	44.4%	benign(0.004)	tolerated(0.59)	neutral(0.004)	NULL
DCLRE1B	64858	genome.wustl.edu	37	1	114453967	114453967	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022836.3	+1	validated	p.T251	0.999	79	0%	260	25.8%	32	37.5%	-	-	-	HMMPfam_DRMBL
HAO2	51179	genome.wustl.edu	37	1	119925543	119925543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005783.1	+1	reviewed	p.R46H	1.000	71	0%	136	18.4%	0	-	probably_damaging(0.955)	tolerated(0.11)	deleterious(0.670)	HMMPfam_FMN_dh,superfamily_FMN-linked oxidoreductases
LELP1	149018	genome.wustl.edu	37	1	153177462	153177462	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010857.1	+1	provisional	p.P93	0.001	72	0%	237	47.3%	0	-	-	-	-	NULL
CLK2	1196	genome.wustl.edu	37	1	155235678	155235678	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003993.2	-1	reviewed	p.D301	1.000	60	0%	289	14.5%	59	23.7%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SPTA1	6708	genome.wustl.edu	37	1	158607931	158607931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.R1694H	1.000	222	0%	515	17.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
OR10J3	441911	genome.wustl.edu	37	1	159284002	159284002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004467.1	-1	provisional	p.L150M	0.274	215	0%	661	20.3%	0	-	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	HMMPfam_7tm_1,superfamily_SSF81321
PVRL4	81607	genome.wustl.edu	37	1	161047308	161047308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030916.2	-1	validated	p.T222I	1.000	52	0%	225	17.8%	41	21.9%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_C2-set_2,superfamily_SSF48726
GPA33	10223	genome.wustl.edu	37	1	167024273	167024273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005814.1	-1	reviewed	p.I256T	0.011	92	0%	375	13.3%	0	-	benign(0.072)	deleterious(0.02)	neutral(0.388)	NULL
KIFAP3	22920	genome.wustl.edu	37	1	169951166	169951166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014970.2	-1	reviewed	p.A582V	1.000	167	0%	318	14.8%	40	17.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00185,HMMPfam_KAP,superfamily_ARM repeat
FMO4	2329	genome.wustl.edu	37	1	171310622	171310622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002022.1	+1	reviewed	p.I441V	0.558	186	0%	475	14.9%	2	50%	benign(0.003)	tolerated(0.32)	neutral(0.024)	HMMPfam_FMO-like
FAM20B	9917	genome.wustl.edu	37	1	179019441	179019441	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014864.3	+1	validated	p.G135	1.000	112	0%	328	16.8%	11	27.2%	-	-	-	NULL
CEP350	9857	genome.wustl.edu	37	1	179975700	179975700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014810.4	+1	reviewed	p.T415I	1.000	21	0%	75	14.7%	4	0%	possibly_damaging(0.907)	deleterious(0.03)	deleterious(0.725)	NULL
XPR1	9213	genome.wustl.edu	37	1	180832953	180832953	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004736.3	+1	validated	p.F537	1.000	335	0%	755	17.5%	34	35.2%	-	-	-	HMMPfam_EXS
KIAA1614	57710	genome.wustl.edu	37	1	180885980	180885980	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020950.1	+1	validated	p.G247	0.000	43	0%	186	22%	1	0%	-	-	-	NULL
NR5A2	2494	genome.wustl.edu	37	1	200017492	200017492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205860.1	+1	validated	p.A219V	1.000	179	0%	510	17.5%	1	0%	benign(0.003)	tolerated(0.4)	neutral(0.016)	superfamily_Nuclear receptor ligand-binding domain
PIGR	5284	genome.wustl.edu	37	1	207112777	207112777	+	Silent	SNP	G	G	T	rs190452650	by1000genomes	TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002644.3	-1	reviewed	p.P25	0.115	45	0%	167	16.2%	363	23.9%	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
SMYD2	56950	genome.wustl.edu	37	1	214504325	214504325	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020197.2	+1	validated	p.S283	0.000	111	0%	337	13.1%	130	11.5%	-	-	-	NULL
ESRRG	2104	genome.wustl.edu	37	1	216850675	216850675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001438.2	-1	validated	p.M72T	1.000	182	0%	407	17.7%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
IARS2	55699	genome.wustl.edu	37	1	220318939	220318942	+	Frame_Shift_Del	DEL	GAGA	GAGA	-	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	GAGA	GAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018060.3	+1	validated	p.E948fs	0.000:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
NVL	4931	genome.wustl.edu	37	1	224495854	224495854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002533.2	-1	validated	p.R152W	0.000	211	0%	664	17.9%	14	0%	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
PARP1	142	genome.wustl.edu	37	1	226549169	226549169	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001618.3	-1	reviewed	p.L1013	1.000	31	0%	106	17.9%	420	21.1%	-	-	-	NULL
SNAP47	116841	genome.wustl.edu	37	1	227935806	227935806	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426344	+1	known	p.G160R	0.000	49	0%	179	19%	54	18.5%	-	-	-	NULL
TTC13	79573	genome.wustl.edu	37	1	231060587	231060587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024525.4	-1	validated	p.R574M	1.000	222	0%	692	16.5%	33	30.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RYR2	6262	genome.wustl.edu	37	1	237756906	237756906	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.L1469Q	0.998	198	0%	436	17%	0	-	possibly_damaging(0.948)	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RYR2	6262	genome.wustl.edu	37	1	237949335	237949335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.E4443K	0.998	91	0%	228	12.3%	0	-	possibly_damaging(0.649)	-	-	HMMPfam_RR_TM4-6
ZNF238	10472	genome.wustl.edu	37	1	244217614	244217614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205768.2	+1	validated	p.P180S	1.000	119	0%	320	16.6%	9	22.2%	probably_damaging(0.988)	tolerated(0.83)	neutral(0.438)	NULL
FSHR	2492	genome.wustl.edu	37	2	49190277	49190277	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000145.3	-1	reviewed	p.I561	0.280	106	0%	200	30.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
BCL11A	53335	genome.wustl.edu	37	2	60687938	60687938	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022893.3	-1	reviewed	p.P703	0.997	52	0%	68	10.3%	1	0%	-	-	-	NULL
MOGS	7841	genome.wustl.edu	37	2	74690030	74690030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006302.2	-1	reviewed	p.R296C	0.998	47	0%	123	17.1%	66	40.9%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Glyco_hydro_63
PCGF1	84759	genome.wustl.edu	37	2	74733892	74733892	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032673.2	-1	validated	p.I107V	1.000	29	0%	90	21.1%	58	43.1%	benign(0.115)	tolerated(0.05)	neutral(0.354)	superfamily_RING/U-box
CNNM4	26504	genome.wustl.edu	37	2	97474357	97474357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020184.3	+1	reviewed	p.R670S	1.000	27	0%	56	17.9%	9	33.3%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMSmart_cNMP
RALB	5899	genome.wustl.edu	37	2	121047236	121047236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002881.2	+1	reviewed	p.R135Q	1.000	174	0%	253	24.1%	18	33.3%	benign(0.011)	tolerated(0.31)	neutral(0.028)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAPGEF4	11069	genome.wustl.edu	37	2	173830320	173830320	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007023.3	+1	validated	p.D243	1.000	135	0%	221	20.4%	2	0%	-	-	-	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"
GULP1	51454	genome.wustl.edu	37	2	189387550	189387550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016315.2	+1	validated	p.L53P	0.968	130	0%	181	22.1%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
DNPEP	23549	genome.wustl.edu	37	2	220239057	220239059	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012100.2	-1	reviewed	p.F472in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Peptidase_M18,superfamily_SSF53187
DNER	92737	genome.wustl.edu	37	2	230252980	230252980	+	Splice_Site	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139072.3	-1	validated	e11+1	1.000	236	0%	400	22%	0	-	-	-	-	-
CHRNG	1146	genome.wustl.edu	37	2	233407755	233407755	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005199.4	+1	reviewed	p.S256	1.000	77	0%	246	23.6%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
GIGYF2	26058	genome.wustl.edu	37	2	233708863	233708863	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103147.1	+1	reviewed	p.T1020	0.002	51	0%	99	12.1%	21	4.7%	unknown(0)	-	-	NULL
AGAP1	116987	genome.wustl.edu	37	2	236817526	236817526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037131.1	+1	validated	p.S434G	1.000	100	1%	212	26.9%	11	45.4%	possibly_damaging(0.46)	tolerated(0.36)	neutral(0.171)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
COL6A3	1293	genome.wustl.edu	37	2	238249575	238249575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004369.3	-1	reviewed	p.A2662T	0.985	122	0.8%	243	25.5%	110	0%	possibly_damaging(0.942)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
IL5RA	3568	genome.wustl.edu	37	3	3139847	3139847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000564.3	-1	reviewed	p.E165D	0.699	129	0%	235	23.4%	1	0%	benign(0.005)	tolerated(0.53)	neutral(0.007)	HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2,superfamily_Fibronectin type III
LRRN1	57633	genome.wustl.edu	37	3	3886563	3886563	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020873.5	+1	validated	p.Q80*	1.000	264	0%	400	25%	0	-	-	-	-	superfamily_SSF52058
TOP2B	7155	genome.wustl.edu	37	3	25639915	25639915	+	Silent	SNP	T	T	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001068.2	-1	reviewed	p.S1583	1.000	86	0%	159	23.3%	146	45.2%	-	-	-	HMMPfam_DTHCT
STAC	6769	genome.wustl.edu	37	3	36485054	36485054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003149.1	+1	provisional	p.G104C	0.001	180	0%	324	25.6%	1	100%	benign(0.34)	tolerated(0.07)	neutral(0.426)	NULL
SCN5A	6331	genome.wustl.edu	37	3	38598029	38598029	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099404.1	-1	reviewed	p.Y1447F	1.000	21	0%	61	24.6%	0	-	possibly_damaging(0.557)	deleterious(0)	deleterious(0.635)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
BSN	8927	genome.wustl.edu	37	3	49699436	49699436	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003458.3	+1	reviewed	p.A3386	1.000	19	0%	124	20.2%	1	100%	-	-	-	NULL
FAM212A	389119	genome.wustl.edu	37	3	49841795	49841795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203370.1	+1	validated	p.R80M	0.355	9	0.000	41	0.293	3	0%	possibly_damaging(0.496)	tolerated(0.05)	deleterious(0.511)	NULL
BAP1	8314	genome.wustl.edu	37	3	52437188	52437188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004656.2	-1	reviewed	p.G619D	0.164	21	0%	62	24.2%	50	40%	benign(0.03)	tolerated(0.49)	neutral(0.012)	NULL
TKT	7086	genome.wustl.edu	37	3	53260820	53260820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001064.2	-1	validated	p.R550C	0.387	22	0%	52	23.1%	830	45.1%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like
ABHD6	57406	genome.wustl.edu	37	3	58242351	58242351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020676.5	+1	validated	p.G13D	0.999	208	0%	377	26%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CADM2	253559	genome.wustl.edu	37	3	85932511	85932512	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153184.3	+1	validated	p.D99fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
RG9MTD1	54931	genome.wustl.edu	37	3	101284382	101284382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017819.2	+1	provisional	p.A253T	0.002	130	0%	340	12.9%	67	13.4%	benign(0.031)	tolerated(0.46)	neutral(0.013)	HMMPfam_tRNA_m1G_MT
ALCAM	214	genome.wustl.edu	37	3	105253592	105253592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001627.2	+1	validated	p.K211N	0.996	539	0%	808	23.1%	27	40.7%	benign(0.006)	deleterious(0)	neutral(0.445)	HMMPfam_C2-set_2,superfamily_Immunoglobulin
BOC	91653	genome.wustl.edu	37	3	113004316	113004316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033254.2	+1	validated	p.R1021C	0.171	33	0%	82	26.8%	13	15.3%	benign(0.009)	deleterious(0.02)	neutral(0.384)	NULL
HSPBAP1	79663	genome.wustl.edu	37	3	122487561	122487561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024610.4	-1	provisional	p.T140I	0.996	86	0%	190	22.1%	0	-	possibly_damaging(0.857)	tolerated(0.19)	neutral(0.381)	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
UROC1	131669	genome.wustl.edu	37	3	126217004	126217004	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144639.2	-1	reviewed	p.S443C	1.000	31	0%	124	21%	0	-	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	HMMPfam_Urocanase,superfamily_Urocanase
PHC3	80012	genome.wustl.edu	37	3	169854431	169854431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024947.3	-1	validated	p.S232I	1.000	100	0%	179	22.3%	7	28.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916726	178916726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.R38H	1.000	195	0.5%	339	24.5%	1	100%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
MASP1	5648	genome.wustl.edu	37	3	186940968	186940968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001879.5	-1	reviewed	p.V586I	1.000	120	0%	292	19.2%	0	-	possibly_damaging(0.929)	deleterious(0.02)	deleterious(0.759)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ATP13A3	79572	genome.wustl.edu	37	3	194157924	194157924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024524.3	-1	validated	p.V674I	1.000	262	0%	439	25.5%	13	53.8%	benign(0.184)	tolerated(0.44)	neutral(0.030)	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M
PDE6B	5158	genome.wustl.edu	37	4	647868	647868	+	Splice_Site	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000283.3	+1	reviewed	e5-1	1.000	9	0.000	19	0.263	0	-	-	-	-	-
JAKMIP1	152789	genome.wustl.edu	37	4	6050598	6050599	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099433.1	-1	validated	p.A671fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PHOX2B	8929	genome.wustl.edu	37	4	41749385	41749385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003924.3	-1	reviewed	p.L137P	1.000	15	0%	31	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
CWH43	80157	genome.wustl.edu	37	4	49034690	49034690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025087.2	+1	validated	p.G539D	0.000	481	0.2%	867	25.6%	7	42.8%	benign(0.021)	tolerated(0.09)	neutral(0.297)	NULL
IGFBP7	3490	genome.wustl.edu	37	4	57907078	57907078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001553.1	-1	provisional	p.P166H	1.000	69	0%	123	24.4%	645	12%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
LPHN3	23284	genome.wustl.edu	37	4	62453099	62453099	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015236.4	+1	reviewed	p.P70	0.998	79	0%	131	21.4%	1	0%	-	-	-	HMMPfam_Gal_Lectin
GUCY1A3	2982	genome.wustl.edu	37	4	156632113	156632113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000856.4	+1	validated	p.L266M	0.993	188	0%	307	22.5%	15	46.6%	benign(0.089)	tolerated(0.14)	neutral(0.256)	NULL
SPOCK3	50859	genome.wustl.edu	37	4	167656103	167656103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016950.2	-1	validated	p.D427G	1.000	194	0.5%	309	30.4%	0	-	unknown(0)	-	-	NULL
DCTD	1635	genome.wustl.edu	37	4	183815663	183815663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012732.1	-1	reviewed	p.A125T	1.000	41	0%	143	24.5%	111	46.8%	possibly_damaging(0.724)	tolerated(0.14)	deleterious(0.512)	HMMPfam_dCMP_cyt_deam_1,PatternScan_CYT_DCMP_DEAMINASES,superfamily_Cytidine_deaminase-like
PDZD2	23037	genome.wustl.edu	37	5	31799764	31799764	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178140.2	+1	reviewed	p.R137*	1.000	52	0%	124	25.8%	0	-	-	-	-	HMMSmart_SM00228,superfamily_PDZ domain-like
MAST4	375449	genome.wustl.edu	37	5	66462742	66462742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015183.2	+1	validated	p.G2390C	0.153	9	0.000	35	0.171	3	0%	benign(0.009)	tolerated(0.44)	neutral(0.013)	NULL
F2R	2149	genome.wustl.edu	37	5	76028950	76028950	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001992.3	+1	reviewed	p.S300	0.000	110	0%	191	24.1%	17	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
PAPD4	167153	genome.wustl.edu	37	5	78919115	78919115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114393.1	+1	validated	p.R90W	1.000	163	0%	322	23.6%	18	38.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCDHB16	57717	genome.wustl.edu	37	5	140564387	140564387	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020957.1	+1	reviewed	p.Y751	0.740	90	0%	190	21.1%	4	100%	-	-	-	NULL
PCDHB15	56121	genome.wustl.edu	37	5	140627365	140627365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018935.2	+1	reviewed	p.S740N	0.003	68	0%	171	22.2%	1	0%	benign(0.019)	tolerated(0.13)	neutral(0.254)	NULL
PCDHGA11	56105	genome.wustl.edu	37	5	140802949	140802949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018914.2	+1	reviewed	p.R719C	0.125	54	0%	95	33.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCDH12	51294	genome.wustl.edu	37	5	141324966	141324967	+	In_Frame_Ins	INS	-	-	GCTGCTGCTGCTGCCGCC	rs66773906		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016580.2	-1	reviewed	p.1178in_frame_insGGSSSS	0.002:0.001	-	-	-	-	-	-	-	-	-	NULL
TCERG1	10915	genome.wustl.edu	37	5	145883505	145883506	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006706.3	+1	reviewed	p.E892fs	1.000:0.891	-	-	-	-	-	-	-	-	-	superfamily_FF domain
SLC6A7	6534	genome.wustl.edu	37	5	149582169	149582169	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014228.3	+1	validated	p.N330	0.998	52	0%	124	18.5%	0	-	-	-	-	HMMPfam_SNF
TIMD4	91937	genome.wustl.edu	37	5	156378762	156378762	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138379.2	-1	validated	p.R147H	0.000	447	0%	818	23.8%	1	100%	possibly_damaging(0.907)	tolerated(0.08)	deleterious(0.660)	NULL
GABRP	2568	genome.wustl.edu	37	5	170235639	170235639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014211.2	+1	reviewed	p.R239W	0.570	76	0%	165	16.4%	2	0%	possibly_damaging(0.913)	deleterious(0)	deleterious(0.809)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
NSD1	64324	genome.wustl.edu	37	5	176638830	176638830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022455.4	+1	reviewed	p.E1144K	1.000	216	0%	390	26.2%	13	61.5%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
HUS1B	135458	genome.wustl.edu	37	6	656846	656846	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148959.3	-1	reviewed	p.R33	0.000	19	0%	53	22.6%	2	50%	-	-	-	HMMPfam_Hus1
WRNIP1	56897	genome.wustl.edu	37	6	2770469	2770469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020135.2	+1	reviewed	p.L377P	1.000	58	0%	118	21.2%	74	45.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
PRPF4B	8899	genome.wustl.edu	37	6	4031878	4031878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003913.4	+1	reviewed	p.H43Y	1.000	117	0%	295	22.4%	9	33.3%	possibly_damaging(0.806)	deleterious(0)	deleterious(0.748)	NULL
DSP	1832	genome.wustl.edu	37	6	7580242	7580242	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004415.2	+1	reviewed	p.N1273	0.041	146	0%	279	21.1%	30	36.6%	-	-	-	NULL
ERVFRD-1	405754	genome.wustl.edu	37	6	11105491	11105491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207582.2	-1	validated	p.R18H	0.613	78	0%	164	26.2%	0	-	benign(0.022)	deleterious(0.04)	neutral(0.350)	NULL
DEK	7913	genome.wustl.edu	37	6	18237647	18237647	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003472.3	-1	reviewed	p.S288T	1.000	128	0%	247	27.9%	67	37.3%	benign(0.016)	tolerated(0.22)	neutral(0.043)	NULL
ZNF322	79692	genome.wustl.edu	37	6	26638120	26638120	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024639.3	-1	validated	p.R221Q	0.419	610	0%	994	14.8%	4	25%	possibly_damaging(0.547)	tolerated(0.06)	deleterious(0.508)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
OR2B2	81697	genome.wustl.edu	37	6	27880073	27880073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033057.2	-1	validated	p.P9T	0.003	244	0%	432	24.3%	0	-	benign(0.001)	tolerated(0.69)	neutral(0.002)	superfamily_Family A G protein-coupled receptor-like
OR12D3	81797	genome.wustl.edu	37	6	29342631	29342631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030959.2	-1	provisional	p.A145V	0.000	325	0%	403	27%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_7tm_1,superfamily_SSF81321
KCNK16	83795	genome.wustl.edu	37	6	39282968	39282968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135105.1	-1	reviewed	p.P301S	0.000	15	0%	40	20%	0	-	unknown(0)	-	-	NULL
SLC22A7	10864	genome.wustl.edu	37	6	43270123	43270123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153320.2	+1	reviewed	p.A416V	0.007	18	0%	58	32.8%	0	-	benign(0.006)	tolerated(0.57)	neutral(0.006)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
GTPBP2	54676	genome.wustl.edu	37	6	43592647	43592647	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000442748	-1	known	p.S252L	0.983	92	0%	186	29.6%	35	34.2%	-	-	-	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
PGK2	5232	genome.wustl.edu	37	6	49754595	49754595	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138733.4	-1	reviewed	p.A102	0.218	307	0%	430	26.3%	0	-	-	-	-	HMMPfam_PGK,superfamily_PGK
DST	667	genome.wustl.edu	37	6	56325046	56325046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015548.4	-1	reviewed	p.P5046S	1.000	127	0%	224	26.3%	18	22.2%	benign(0.001)	-	-	NULL
MDN1	23195	genome.wustl.edu	37	6	90372658	90372658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.E4755D	0.583	179	0%	315	24.8%	14	50%	benign(0.039)	tolerated(0.6)	neutral(0.006)	NULL
MDN1	23195	genome.wustl.edu	37	6	90428609	90428609	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.G2066	0.261	128	0%	240	23.3%	3	33.3%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
MMS22L	253714	genome.wustl.edu	37	6	97720696	97720696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198468.2	-1	predicted	p.A164T	1.000	428	0%	724	26.5%	6	16.6%	possibly_damaging(0.643)	deleterious(0.03)	deleterious(0.590)	NULL
ROS1	6098	genome.wustl.edu	37	6	117674156	117674156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002944.2	-1	reviewed	p.P1440S	1.000	217	0%	368	24.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF63825
LAMA2	3908	genome.wustl.edu	37	6	129714387	129714387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.M1811T	1.000	170	0%	266	18.8%	0	-	benign(0.001)	tolerated(0.32)	neutral(0.024)	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_I
VNN2	8875	genome.wustl.edu	37	6	133073626	133073626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004665.2	-1	reviewed	p.T267I	0.000	343	0%	663	25.6%	1	0%	benign(0)	tolerated(1)	-	superfamily_Ntlse/CNhydtse
SHPRH	257218	genome.wustl.edu	37	6	146207903	146207903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042683.2	-1	validated	p.K1663R	1.000	151	0%	224	22.3%	3	100%	probably_damaging(0.998)	tolerated(0.28)	deleterious(0.506)	NULL
GRM1	2911	genome.wustl.edu	37	6	146350937	146350937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000838.3	+1	reviewed	p.L95P	1.000	100	0%	153	22.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ANF_receptor,superfamily_SSF53822
CARD11	84433	genome.wustl.edu	37	7	2978411	2978411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032415.3	-1	validated	p.H307Y	1.000	18	0%	38	26.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
RNF216	54476	genome.wustl.edu	37	7	5781136	5781136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207111.2	-1	reviewed	p.N171S	0.907	199	0%	454	26.7%	17	41.1%	possibly_damaging(0.875)	tolerated(0.15)	deleterious(0.581)	NULL
PMS2	5395	genome.wustl.edu	37	7	6029581	6029581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000535.5	-1	reviewed	p.V332I	1.000	74	0%	195	24.1%	7	42.8%	possibly_damaging(0.662)	tolerated(0.11)	deleterious(0.506)	HMMPfam_DNA_mis_repair,superfamily_Ribosomal protein S5 domain 2-like
CCZ1B	221960	genome.wustl.edu	37	7	6862965	6862965	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198097.2	-1	predicted	p.R139	0.987	46	0%	112	21.4%	65	16.9%	-	-	-	HMMPfam_DUF2049
PKD1L1	168507	genome.wustl.edu	37	7	47925508	47925508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138295.2	-1	reviewed	p.P994L	0.000	91	0%	202	25.2%	0	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
ZPBP	11055	genome.wustl.edu	37	7	49977133	49977133	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007009.2	-1	validated	p.T349	0.000	333	0%	440	21.6%	0	-	-	-	-	HMMPfam_Sp38
CCT6A	908	genome.wustl.edu	37	7	56127968	56127968	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001762.3	+1	reviewed	p.E358Q	1.000	83	0%	143	23.8%	344	46.5%	benign(0.041)	tolerated(0.06)	neutral(0.325)	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF52029,superfamily_SSF54849
ELN	2006	genome.wustl.edu	37	7	73462835	73462835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000501.2	+1	reviewed	p.V250I	0.837	60	0%	166	32.5%	19	10.5%	unknown(0)	tolerated(0.05)	-	NULL
PTPN12	5782	genome.wustl.edu	37	7	77240266	77240266	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002835.3	+1	reviewed	p.E281V	1.000	286	0.3%	476	25%	22	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
DBF4	10926	genome.wustl.edu	37	7	87533610	87533610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006716.3	+1	validated	p.L310I	1.000	100	0%	137	19.7%	14	42.8%	probably_damaging(0.975)	tolerated(0.11)	deleterious(0.689)	HMMPfam_zf-DBF,HMMSmart_SM00586
ZNF804B	219578	genome.wustl.edu	37	7	88964105	88964105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181646.2	+1	provisional	p.K603N	0.004	305	0%	413	27.4%	0	-	benign(0.072)	deleterious(0)	neutral(0.450)	NULL
ANKIB1	54467	genome.wustl.edu	37	7	92015852	92015852	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019004.1	+1	validated	p.L549	0.996	83	0%	136	25%	12	25%	unknown(0)	-	-	HMMSmart_RING,HMMPfam_IBR,HMMSmart_IBR,superfamily_SSF57850
ANKIB1	54467	genome.wustl.edu	37	7	92027051	92027051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019004.1	+1	validated	p.G804S	0.876	209	0%	319	27.3%	17	52.9%	benign(0)	deleterious(0)	neutral(0.445)	NULL
ZSCAN21	7589	genome.wustl.edu	37	7	99661969	99661969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145914.2	+1	validated	p.G384V	1.000	103	0%	225	24%	20	45%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_C2H2 and C2HC zinc fingers
C7orf43	55262	genome.wustl.edu	37	7	99754077	99754077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018275.3	-1	predicted	p.T391M	0.971	25	0%	98	22.4%	38	52.6%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	NULL
KCND2	3751	genome.wustl.edu	37	7	119915105	119915105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012281.2	+1	reviewed	p.R140H	1.000	79	0%	93	31.2%	1	0%	probably_damaging(0.96)	tolerated(0.08)	deleterious(0.703)	HMMSmart_SM00225,superfamily_POZ domain
CRYGN	155051	genome.wustl.edu	37	7	151135009	151135009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000491928	-1	known	p.A115T	0.000	12	0%	36	27.8%	0	-	benign(0.017)	-	-	NULL
FBXO16	157574	genome.wustl.edu	37	8	28314442	28314442	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172366.2	-1	reviewed	p.C116	1.000	135	0%	263	29.7%	4	50%	-	-	-	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383
RAB11FIP1	80223	genome.wustl.edu	37	8	37729377	37729377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002814.2	-1	validated	p.Q981H	0.014	130	0%	385	26.2%	9	33.3%	possibly_damaging(0.896)	deleterious(0)	deleterious(0.798)	NULL
LYN	4067	genome.wustl.edu	37	8	56859038	56859038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002350.2	+1	validated	p.R55M	1.000	119	0%	267	22.1%	16	6.2%	benign(0.025)	tolerated(0.12)	neutral(0.262)	superfamily_SH3-domain
PENK	5179	genome.wustl.edu	37	8	57354238	57354238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135690.1	-1	validated	p.A133T	0.580	146	0%	268	28%	0	-	benign(0.002)	tolerated(0.2)	neutral(0.049)	NULL
COPS5	10987	genome.wustl.edu	37	8	67958163	67958163	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006837.2	-1	reviewed	p.D268E	1.000	96	0%	202	26.2%	157	48.4%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SLC10A5	347051	genome.wustl.edu	37	8	82606559	82606559	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010893.2	-1	validated	p.G217*	1.000	250	0%	439	23.2%	0	-	-	-	-	HMMPfam_SBF
PKHD1L1	93035	genome.wustl.edu	37	8	110493694	110493694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177531.4	+1	validated	p.N3120K	0.705	27	0%	37	24.3%	0	-	benign(0.023)	tolerated(0.43)	neutral(0.014)	superfamily_Pectin lyase-like,HMMPfam_G8
LRRC6	23639	genome.wustl.edu	37	8	133623559	133623559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012472.3	-1	provisional	p.R342P	1.000	95	0%	130	26.2%	6	83.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CS
FAM135B	51059	genome.wustl.edu	37	8	139164400	139164400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015912.3	-1	validated	p.A773V	1.000	127	0%	249	20.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
COL22A1	169044	genome.wustl.edu	37	8	139838949	139838949	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152888.1	-1	validated	p.K307	0.764	82	0%	201	27.4%	0	-	-	-	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
HEATR7A	727957	genome.wustl.edu	37	8	145235128	145235128	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032450.2	+1	provisional	p.A116	0.056	7	0.000	27	0.370	16	37.5%	-	-	-	superfamily_ARM repeat
ADCK5	203054	genome.wustl.edu	37	8	145616097	145616097	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174922.3	+1	validated	p.Q128	1.000	5	0.000	10	0.400	12	58.3%	possibly_damaging(0.819)	deleterious(0)	deleterious(0.754)	NULL
TAF1L	138474	genome.wustl.edu	37	9	32635156	32635156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153809.2	-1	provisional	p.D141G	1.000	209	0%	398	20.9%	1	0%	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	NULL
OR2S2	56656	genome.wustl.edu	37	9	35957425	35957425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019897.2	-1	provisional	p.T224I	0.022	179	0%	347	27.7%	0	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	HMMPfam_7tm_1,superfamily_SSF81321
CCIN	881	genome.wustl.edu	37	9	36170084	36170084	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005893.2	+1	reviewed	p.D195E	1.000	81	0%	212	24.5%	1	0%	probably_damaging(0.99)	tolerated(1)	neutral(0.442)	HMMPfam_BACK
PIP5K1B	8395	genome.wustl.edu	37	9	71555691	71555691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003558.2	+1	validated	p.T496I	0.002	300	0%	486	23.9%	9	33.3%	benign(0.001)	tolerated(0.17)	neutral(0.059)	NULL
FAM120A	23196	genome.wustl.edu	37	9	96305695	96305695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014612.3	+1	validated	p.A701T	1.000	166	0%	301	22.3%	127	46.4%	possibly_damaging(0.856)	tolerated(0.6)	neutral(0.335)	NULL
STX17	55014	genome.wustl.edu	37	9	102713458	102713458	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017919.2	+1	validated	p.T102	0.037	189	0%	382	26.2%	12	41.6%	-	-	-	superfamily_t-snare
ACTL7A	10881	genome.wustl.edu	37	9	111624837	111624837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006687.2	+1	reviewed	p.G79C	1.000	32	0%	91	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
DAB2IP	153090	genome.wustl.edu	37	9	124544691	124544691	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138709.1	+1	validated	p.Q1038*	1.000	136	0%	451	25.9%	36	33.3%	-	-	-	NULL
OLFML2A	169611	genome.wustl.edu	37	9	127572171	127572171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182487.2	+1	validated	p.R480H	1.000	24	0%	91	26.4%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_OLF,HMMSmart_SM00284
SPTAN1	6709	genome.wustl.edu	37	9	131388219	131388221	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130438.1	+1	validated	p.K2083in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
QRFP	347148	genome.wustl.edu	37	9	133768858	133768858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198180.1	-1	validated	p.S123N	0.996	10	0%	49	16.3%	1	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
TSC1	7248	genome.wustl.edu	37	9	135780991	135780991	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000368.4	-1	reviewed	p.D658	0.974	97	0%	184	28.3%	5	80%	-	-	-	HMMPfam_Hamartin
CEL	1056	genome.wustl.edu	37	9	135940444	135940444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001807.3	+1	reviewed	p.V123I	0.452	11	0%	37	32.4%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
RPL7A	6130	genome.wustl.edu	37	9	136216773	136216773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000972.2	+1	reviewed	p.Q94R	1.000	18	0%	54	24.1%	1384	45.5%	benign(0.364)	deleterious(0.01)	deleterious(0.522)	superfamily_L30e-like
KIAA1217	56243	genome.wustl.edu	37	10	24802284	24802284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019590.3	+1	validated	p.V700M	0.995	125	0%	216	25%	35	42.8%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	NULL
SVIL	6840	genome.wustl.edu	37	10	29747374	29747374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021738.2	-1	reviewed	p.E2183K	1.000	97	0%	197	22.8%	24	33.3%	benign(0.003)	tolerated(0.13)	neutral(0.253)	HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain
OGDHL	55753	genome.wustl.edu	37	10	50953993	50953993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018245.2	-1	validated	p.R443S	1.000	21	0%	70	28.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E1_dh,superfamily_SSF52518
ARID5B	84159	genome.wustl.edu	37	10	63661967	63661967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.A24D	1.000	108	0%	212	23.1%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NDST2	8509	genome.wustl.edu	37	10	75567668	75567668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003635.3	-1	reviewed	p.Y160C	1.000	49	0%	158	29.1%	7	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KAT6B	23522	genome.wustl.edu	37	10	76781908	76781908	+	Silent	SNP	A	A	G	rs79644703		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012330.2	+1	validated	p.E1097	0.213	195	8.2%	260	18.1%	2	50%	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89720799	89720802	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	TACT	TACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.T319fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
CYP2C19	1557	genome.wustl.edu	37	10	96535189	96535189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000769.1	+1	reviewed	p.R125H	0.957	473	0%	774	22.6%	0	-	benign(0.298)	tolerated(0.05)	neutral(0.438)	HMMPfam_p450,superfamily_Cytochrome_P450
MUC5B	727897	genome.wustl.edu	37	11	1267708	1267708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.A3203T	0.000	34	0%	86	25.6%	28	14.2%	unknown(0)	-	-	NULL
OR52L1	338751	genome.wustl.edu	37	11	6007817	6007817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005173.2	-1	validated	p.C115F	0.998	140	0%	274	26.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TUB	7275	genome.wustl.edu	37	11	8118348	8118348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003320.4	+1	reviewed	p.V283I	0.010	46	0%	161	23%	0	-	benign(0.001)	tolerated(0.47)	neutral(0.011)	NULL
AMBRA1	55626	genome.wustl.edu	37	11	46568747	46568747	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017749.2	-1	validated	p.P98	0.088	314	0%	593	22.1%	13	38.4%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
FNBP4	23360	genome.wustl.edu	37	11	47744609	47744609	+	Silent	SNP	T	T	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015308.2	-1	validated	p.P908	0.770	57	0%	131	27.5%	57	61.4%	-	-	-	NULL
OR8J3	81168	genome.wustl.edu	37	11	55904448	55904448	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004064.1	-1	provisional	p.T249	0.000	206	0%	301	27.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CTNND1	1500	genome.wustl.edu	37	11	57582937	57582937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085458.1	+1	validated	p.D925N	0.859	107	0%	196	28.1%	125	40.8%	benign(0)	deleterious(0)	neutral(0.445)	NULL
ZFP91	80829	genome.wustl.edu	37	11	58385170	58385170	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053023.3	+1	reviewed	p.A568	0.985	318	0%	393	20.6%	36	25%	-	-	-	NULL
SAC3D1	29901	genome.wustl.edu	37	11	64812014	64812014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013299.3	+1	validated	p.G298R	0.997	13	0%	48	33.3%	105	38%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
POLA2	23649	genome.wustl.edu	37	11	65036153	65036155	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002689.2	+1	provisional	p.E106in_frame_del	1.000:1.000:0.998	-	-	-	-	-	-	-	-	-	HMMPfam_Pol_alpha_B_N
ENSG00000234376	0	genome.wustl.edu	37	11	89486327	89486327	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000411859	-1	known	p.K270Q	0.990	233	0%	363	20.7%	0	-	-	-	-	HMMSmart_SM00398,superfamily_HMG-box
FAT3	120114	genome.wustl.edu	37	11	92616547	92616547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.A4309T	0.000	45	0%	71	23.9%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
DDI1	414301	genome.wustl.edu	37	11	103908618	103908618	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001711.2	+1	validated	p.T356	0.424	85	0%	202	30.2%	0	-	-	-	-	NULL
ANKK1	255239	genome.wustl.edu	37	11	113267969	113267969	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178510.1	+1	reviewed	p.L288	1.000	20	0%	74	32.4%	0	-	-	-	-	NULL
VPS11	55823	genome.wustl.edu	37	11	118944057	118944057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000300793	+1	known	p.R344L	1.000	29	0%	47	25.5%	17	47%	-	-	-	NULL
OR4D5	219875	genome.wustl.edu	37	11	123810512	123810512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001965.1	+1	provisional	p.L63F	0.001	305	0%	450	28%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FGF6	2251	genome.wustl.edu	37	12	4553370	4553370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020996.1	-1	reviewed	p.V127M	0.998	61	0%	167	24.6%	0	-	benign(0.003)	deleterious(0.01)	neutral(0.406)	HMMPfam_FGF,HMMSmart_FGF,superfamily_Cytok_IL1_like
VWF	7450	genome.wustl.edu	37	12	6094265	6094265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000552.3	-1	reviewed	p.E2308K	1.000	57	0%	180	21.7%	70	1.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1
CD163L1	283316	genome.wustl.edu	37	12	7528075	7528075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174941.4	-1	reviewed	p.R935C	0.119	204	0%	257	22.2%	0	-	benign(0.274)	deleterious(0.02)	neutral(0.412)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
PLBD1	79887	genome.wustl.edu	37	12	14695180	14695180	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024829.5	-1	validated	p.T127	0.962	108	0%	267	21.7%	3	0%	-	-	-	HMMPfam_Phospholip_B
PLCZ1	89869	genome.wustl.edu	37	12	18852862	18852862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033123.2	-1	provisional	p.L347P	0.921	127	0%	166	20.5%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	superfamily_PLC-like phosphodiesterases
ABCC9	10060	genome.wustl.edu	37	12	22089475	22089475	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005691.2	-1	reviewed	p.L45S	1.000	132	0%	214	19.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	byCluster	TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.G12V	1.000	38	0%	91	15.4%	7	42.8%	benign(0.048)	deleterious(0)	neutral(0.448)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
OVCH1	341350	genome.wustl.edu	37	12	29604402	29604402	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183378.2	-1	validated	p.L877	0.132	146	0%	212	26.9%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
MLL2	8085	genome.wustl.edu	37	12	49427932	49427932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.G3553D	1.000	58	0%	120	28.3%	8	50%	unknown(0)	-	-	NULL
GALNT6	11226	genome.wustl.edu	37	12	51749682	51749682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007210.3	-1	reviewed	p.H555Y	0.735	79	0%	220	27.3%	19	63.1%	possibly_damaging(0.582)	deleterious(0.01)	deleterious(0.606)	HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,superfamily_RicinB_like
LOC100129509	100129509	genome.wustl.edu	37	12	52770961	52770961	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001718424.1	+1	model	p.I156	0.001	1	0.000	4	1.000	0	-	-	-	-	NULL
SUOX	6821	genome.wustl.edu	37	12	56398240	56398240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000456.2	+1	reviewed	p.P356H	1.000	31	0%	62	16.1%	43	48.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Oxidored_molyb,superfamily_Oxidored_molyb
ZC3H10	84872	genome.wustl.edu	37	12	56514483	56514483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032786.1	+1	provisional	p.L46S	1.000	25	0%	90	26.7%	10	30%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1
LRP1	4035	genome.wustl.edu	37	12	57589126	57589126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002332.2	+1	reviewed	p.C2794Y	1.000	31	0%	123	24.4%	10	10%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,superfamily_YWTD domain
NAV3	89795	genome.wustl.edu	37	12	78516181	78516181	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014903.4	+1	validated	p.G1404A	1.000	328	0.3%	403	20.3%	0	-	possibly_damaging(0.944)	deleterious(0.01)	deleterious(0.794)	NULL
NAV3	89795	genome.wustl.edu	37	12	78593227	78593227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014903.4	+1	validated	p.V2189I	1.000	177	0%	231	21.6%	1	0%	benign(0)	tolerated(0.49)	neutral(0.011)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRIQ1	84125	genome.wustl.edu	37	12	85449933	85449933	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.Q454	0.000	321	0%	442	22.2%	1	100%	-	-	-	superfamily_RNI-like
AMDHD1	144193	genome.wustl.edu	37	12	96360210	96360210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152435.2	+1	validated	p.A373T	1.000	126	0%	262	21.4%	1	0%	possibly_damaging(0.866)	deleterious(0.01)	deleterious(0.741)	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
SLC17A8	246213	genome.wustl.edu	37	12	100806569	100806569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139319.2	+1	reviewed	p.L403S	1.000	233	0%	481	24.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
CHPT1	56994	genome.wustl.edu	37	12	102116985	102116987	+	In_Frame_Del	DEL	ATT	ATT	-	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	ATT	ATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020244.2	+1	validated	p.I276in_frame_del	0.996:1.000:1.000	-	-	-	-	-	-	-	-	-	PatternScan_LIPOYL
RPLP0	6175	genome.wustl.edu	37	12	120636713	120636713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002.3	-1	reviewed	p.F137L	1.000	35	0%	59	22%	3517	43.5%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
GPR133	283383	genome.wustl.edu	37	12	131451055	131451055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198827.3	+1	validated	p.V51M	0.998	76	0%	163	21.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Concanavalin A-like lectins/glucanases
OLFM4	10562	genome.wustl.edu	37	13	53608532	53608532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006418.3	+1	reviewed	p.C85Y	1.000	238	0%	422	27.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
REC8	9985	genome.wustl.edu	37	14	24648929	24648929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048205.1	+1	reviewed	p.H482R	0.998	19	0%	63	34.9%	191	45.5%	benign(0.304)	tolerated(0.34)	neutral(0.117)	NULL
TINF2	26277	genome.wustl.edu	37	14	24710280	24710280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099274.1	-1	reviewed	p.T184A	0.214	311	0%	867	25.4%	46	43.4%	possibly_damaging(0.889)	tolerated(0.05)	deleterious(0.695)	NULL
FAM179B	23116	genome.wustl.edu	37	14	45512906	45512906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015091.2	+1	validated	p.G1277E	1.000	82	0%	110	22.7%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
LGMN	5641	genome.wustl.edu	37	14	93178208	93178208	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008530.1	-1	reviewed	p.V235I	1.000	93	0%	195	27.7%	86	26.7%	possibly_damaging(0.95)	tolerated(0.13)	deleterious(0.646)	HMMPfam_Peptidase_C13
GPR132	29933	genome.wustl.edu	37	14	105517999	105517999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013345.2	-1	reviewed	p.A159T	0.999	11	0%	48	29.2%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CYFIP1	23191	genome.wustl.edu	37	15	22958214	22958214	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014608.2	+1	validated	p.S619	0.495	28	0%	68	27.9%	70	42.8%	-	-	-	HMMPfam_FragX_IP
HERC2	8924	genome.wustl.edu	37	15	28525245	28525245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.G171C	0.820	129	0%	242	29.8%	6	50%	benign(0.005)	deleterious(0.05)	neutral(0.345)	NULL
TJP1	7082	genome.wustl.edu	37	15	30065521	30065521	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003257.3	-1	validated	p.R42*	1.000	295	0%	518	22%	9	11.1%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
RYR3	6263	genome.wustl.edu	37	15	33795849	33795849	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.L63	1.000	72	0%	154	26%	0	-	-	-	-	HMMPfam_Ins145_P3_rec
RYR3	6263	genome.wustl.edu	37	15	34064310	34064310	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.T3002	0.007	55	0%	112	25.9%	0	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34130646	34130646	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.D4155	0.000	120	0%	230	27.8%	0	-	-	-	-	NULL
EIF2AK4	440275	genome.wustl.edu	37	15	40324439	40324440	+	Splice_Site	INS	-	-	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013703.2	+1	validated	e36+1	1.000:1.000	-	-	-	-	-	-	-	-	-	-
C15orf52	388115	genome.wustl.edu	37	15	40630783	40630783	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207380.2	-1	validated	p.R200*	0.004	49	0%	172	26.2%	1	0%	-	-	-	NULL
ZSCAN29	146050	genome.wustl.edu	37	15	43661280	43661280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152455.3	-1	validated	p.T122P	0.996	113	0%	244	24.2%	10	30%	unknown(0)	tolerated(0.28)	-	HMMSmart_SM00431
PYGO1	26108	genome.wustl.edu	37	15	55838599	55838599	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015617.1	-1	provisional	p.A294	0.088	505	0%	742	23.2%	4	75%	-	-	-	NULL
HSP90AB4P	664618	genome.wustl.edu	37	15	58983315	58983315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380522	-1	known	p.S502N	1.000	184	0%	323	29.4%	0	-	-	-	-	HMMPfam_HSP90,superfamily_SSF110942
NARG2	79664	genome.wustl.edu	37	15	60768325	60768325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024611.4	-1	validated	p.R28Q	1.000	95	0%	163	20.2%	8	25%	benign(0.017)	tolerated(0.37)	neutral(0.019)	NULL
ANKDD1A	348094	genome.wustl.edu	37	15	65239656	65239656	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182703.3	+1	validated	p.L398	0.965	55	0%	66	28.8%	1	0%	-	-	-	NULL
IQCH	64799	genome.wustl.edu	37	15	67677306	67677306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031715.2	+1	validated	p.D469N	0.082	342	0%	490	22.7%	1	100%	probably_damaging(0.988)	tolerated(0.64)	neutral(0.441)	NULL
SGK269	79834	genome.wustl.edu	37	15	77474084	77474084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024776.2	-1	validated	p.R62Q	1.000	311	0%	456	26.1%	6	50%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
TBC1D2B	23102	genome.wustl.edu	37	15	78317679	78317679	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418039	-1	known	p.R218Q	0.000	81	0%	207	22.2%	2	0%	-	-	-	NULL
AGPHD1	123688	genome.wustl.edu	37	15	78805643	78805643	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013619.2	+1	validated	p.A71	0.022	146	0%	337	22%	4	75%	-	-	-	HMMPfam_APH,superfamily_Protein kinase-like (PK-like)
ADAMTSL3	57188	genome.wustl.edu	37	15	84553879	84553879	+	Silent	SNP	C	C	T	rs140676489	by1000genomes	TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207517.2	+1	validated	p.S329	0.929	63	0%	92	31.5%	0	-	-	-	-	NULL
DET1	55070	genome.wustl.edu	37	15	89074479	89074479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017996.3	-1	validated	p.C164Y	0.991	63	0%	114	24.6%	2	50%	benign(0)	tolerated(1)	-	HMMPfam_Det1
CERS3	204219	genome.wustl.edu	37	15	101013146	101013146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178842.3	-1	validated	p.A241T	0.995	226	0%	401	21.7%	0	-	benign(0.016)	deleterious(0.01)	neutral(0.406)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
CREBBP	1387	genome.wustl.edu	37	16	3843499	3843500	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004380.2	-1	reviewed	p.R369fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-TAZ,HMMSmart_ZnF_TAZ,superfamily_TAZ_finger
TXNDC11	51061	genome.wustl.edu	37	16	11785669	11785669	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015914.5	-1	provisional	p.S459	0.351	113	0%	205	25.9%	20	30%	-	-	-	NULL
KIAA0430	9665	genome.wustl.edu	37	16	15716920	15716920	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014647.3	-1	validated	p.S777	0.001	81	0%	224	26.8%	7	42.8%	-	-	-	superfamily_RNA-binding domain RBD
ABCC1	4363	genome.wustl.edu	37	16	16218681	16218681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004996.3	+1	reviewed	p.C1209Y	1.000	62	0%	151	25.2%	38	60.5%	possibly_damaging(0.463)	deleterious(0.03)	deleterious(0.516)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ZP2	7783	genome.wustl.edu	37	16	21222863	21222863	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003460.1	-1	reviewed	p.A2	0.000	167	0%	367	28.3%	0	-	-	-	-	NULL
PLK1	5347	genome.wustl.edu	37	16	23695396	23695396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005030.3	+1	provisional	p.T341I	0.954	187	0%	431	25.1%	55	38.1%	benign(0.003)	tolerated(0.24)	neutral(0.037)	NULL
COQ9	57017	genome.wustl.edu	37	16	57492180	57492180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020312.1	+1	provisional	p.P210H	1.000	28	0%	68	29.4%	173	46.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COQ9
CNGB1	1258	genome.wustl.edu	37	16	57983298	57983298	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001297.4	-1	reviewed	p.E360	0.002	84	0%	225	22.2%	0	-	-	-	-	NULL
CTCF	10664	genome.wustl.edu	37	16	67654642	67654642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.R377C	1.000	191	0%	487	27.7%	49	48.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
CDH1	999	genome.wustl.edu	37	16	68847285	68847285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004360.3	+1	reviewed	p.A403T	0.000	221	0%	456	24.3%	141	48.2%	benign(0.132)	tolerated(0.18)	neutral(0.067)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
BCMO1	53630	genome.wustl.edu	37	16	81324077	81324077	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017429.2	+1	reviewed	p.L513	0.979	94	0%	223	30.5%	1	100%	-	-	-	HMMPfam_RPE65
BCL6B	255877	genome.wustl.edu	37	17	6928019	6928020	+	In_Frame_Ins	INS	-	-	CAG	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181844.3	+1	validated	p.238in_frame_insS	0.939:0.528	-	-	-	-	-	-	-	-	-	NULL
NEURL4	84461	genome.wustl.edu	37	17	7226363	7226363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032442.2	-1	validated	p.R833C	0.993	8	0.000	29	0.276	17	47%	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	HMMSmart_SM00588
DNAH9	1770	genome.wustl.edu	37	17	11540095	11540095	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.E594*	0.358	116	0%	267	20.6%	0	-	-	-	-	HMMPfam_DHC_N1
LOC732391	732391	genome.wustl.edu	37	17	15469537	15469537	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001722159.1	-1	model	p.Q14	0.772	77	0%	164	25.6%	1	100%	-	-	-	NULL
ACACA	31	genome.wustl.edu	37	17	35591988	35591988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198834.1	-1	reviewed	p.L1050F	0.999	163	0%	278	21.6%	21	42.8%	benign(0.016)	deleterious(0)	neutral(0.445)	HMMPfam_ACC_central
KRTAP4-12	83755	genome.wustl.edu	37	17	39279929	39279929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031854.2	-1	reviewed	p.S149N	0.998	46	0%	82	25.6%	0	-	unknown(0)	deleterious(0.04)	-	HMMPfam_Keratin_B2
VAT1	10493	genome.wustl.edu	37	17	41170690	41170690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006373.3	-1	validated	p.N172D	1.000	17	0%	59	15.3%	147	41.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_GroES-like,superfamily_NAD(P)-binding Rossmann-fold domains
NPEPPS	9520	genome.wustl.edu	37	17	45669428	45669429	+	Splice_Site	INS	-	-	AAA	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006310.3	+1	reviewed	e11+2	1.000:1.000	-	-	-	-	-	-	-	-	-	-
PDK2	5164	genome.wustl.edu	37	17	48185985	48185985	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002611.3	+1	provisional	p.R291	1.000	17	0%	61	29.5%	21	42.8%	-	-	-	HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
SCN4A	6329	genome.wustl.edu	37	17	62018998	62018998	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000334.4	-1	reviewed	p.S1548	0.973	14	0%	53	24.5%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ABCA9	10350	genome.wustl.edu	37	17	66978725	66978725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080283.3	-1	reviewed	p.Q1566H	0.994	373	0%	630	25.2%	2	50%	benign(0.037)	tolerated(0.15)	neutral(0.243)	NULL
CCDC40	55036	genome.wustl.edu	37	17	78073453	78073453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017950.2	+1	validated	p.R1103Q	0.649	15	0%	39	30.8%	8	62.5%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
C18orf1	753	genome.wustl.edu	37	18	13645227	13645227	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181481.3	+1	validated	p.H164	0.985	72	0%	157	24.8%	2	50%	-	-	-	NULL
NOL4	8715	genome.wustl.edu	37	18	31432882	31432882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003787.3	-1	validated	p.A614V	1.000	179	0%	241	22.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PIK3C3	5289	genome.wustl.edu	37	18	39638012	39638012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002647.2	+1	validated	p.R810Q	1.000	209	0%	276	24.3%	40	47.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like
SETBP1	26040	genome.wustl.edu	37	18	42531203	42531203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015559.2	+1	validated	p.A633V	1.000	213	0%	374	23.8%	0	-	benign(0.003)	tolerated(0.57)	neutral(0.006)	NULL
ATP5A1	498	genome.wustl.edu	37	18	43666116	43666116	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001937.1	-1	reviewed	p.G464	0.989	93	0%	299	29.4%	819	44.4%	-	-	-	HMMPfam_ATP-synt_ab_C,superfamily_C-terminal domain of alpha and beta subunits of F1 ATP synthase
ARID3A	1820	genome.wustl.edu	37	19	964331	964331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005224.2	+1	reviewed	p.G284S	1.000	6	0.000	23	0.348	19	42.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ARID,HMMSmart_BRIGHT,superfamily_ARID
AP3D1	8943	genome.wustl.edu	37	19	2109918	2109918	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003938.5	-1	validated	p.L1040	0.990	13	0%	40	30%	170	39.4%	-	-	-	HMMPfam_BLVR
SEMA6B	10501	genome.wustl.edu	37	19	4546261	4546261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032108.2	-1	reviewed	p.G569R	0.999	4	0.000	14	0.571	7	0%	benign(0.016)	tolerated(0.38)	neutral(0.018)	HMMPfam_PSI,superfamily_Plexin repeat
LRRC8E	80131	genome.wustl.edu	37	19	7965387	7965387	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025061.3	+1	validated	p.L660	0.950	4	0.000	20	0.350	25	60%	-	-	-	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
MUC16	94025	genome.wustl.edu	37	19	9066389	9066389	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.S7019	0.000	437	0.2%	850	29.2%	3	100%	-	-	-	NULL
CYP4F2	8529	genome.wustl.edu	37	19	16000324	16000324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082.3	-1	reviewed	p.R276H	0.010	297	0%	686	23.9%	0	-	benign(0.016)	tolerated(0.12)	neutral(0.261)	HMMPfam_p450,superfamily_Cytochrome_P450
IL12RB1	3594	genome.wustl.edu	37	19	18170850	18170850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005535.1	-1	reviewed	p.L613M	0.001	20	0%	77	22.1%	1	100%	possibly_damaging(0.852)	tolerated(0.21)	neutral(0.371)	NULL
LOC100288150	100288150	genome.wustl.edu	37	19	18652805	18652805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343620.1	+1	model	p.P163T	0.988	8	0.000	13	0.385	147	48.2%	unknown(0)	-	-	NULL
LOC100130518	100130518	genome.wustl.edu	37	19	22486073	22486073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719773.2	+1	model	p.G32D	0.011	8	0.000	18	0.278	0	-	-	-	-	NULL
LIPE	3991	genome.wustl.edu	37	19	42911801	42911801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005357.2	-1	reviewed	p.P600H	0.996	35	0%	78	37.2%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSL_N,superfamily_alpha/beta-Hydrolases
IRGC	56269	genome.wustl.edu	37	19	44222989	44222989	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019612.3	+1	validated	p.T93	0.000	9	0.000	40	0.275	0	-	-	-	-	HMMPfam_IIGP,superfamily_SSF52540
ZNF230	7773	genome.wustl.edu	37	19	44514489	44514489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006300.3	+1	validated	p.A100T	0.001	121	0%	230	21.7%	4	75%	benign(0.418)	tolerated(0.22)	neutral(0.178)	NULL
MARK4	57787	genome.wustl.edu	37	19	45762308	45762308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031417.2	+1	provisional	p.L38P	1.000	9	0.000	27	0.259	13	23%	benign(0.001)	tolerated(0.27)	neutral(0.034)	superfamily_Kinase_like
FOSB	2354	genome.wustl.edu	37	19	45976113	45976113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006732.2	+1	reviewed	p.Q287R	0.999	27	0%	114	15.8%	5	40%	possibly_damaging(0.776)	deleterious(0)	deleterious(0.734)	NULL
PTOV1	53635	genome.wustl.edu	37	19	50360315	50360315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017432.3	+1	provisional	p.F214L	1.000	18	0%	130	31.5%	220	34.5%	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	NULL
MYH14	79784	genome.wustl.edu	37	19	50753079	50753079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077186.1	+1	reviewed	p.P552L	1.000	48	0%	140	25%	72	55.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF470	388566	genome.wustl.edu	37	19	57088381	57088381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001668.3	+1	validated	p.M195T	0.000	100	0%	202	23.8%	1	100%	benign(0.006)	tolerated(0.71)	neutral(0.002)	NULL
RALGAPA2	57186	genome.wustl.edu	37	20	20563839	20563839	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430436	-1	known	p.A671V	0.826	149	0%	180	18.9%	5	20%	-	-	-	NULL
ADNP	23394	genome.wustl.edu	37	20	49509055	49509055	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015339.2	-1	reviewed	p.L732F	0.743	132	0%	243	26.3%	17	23.5%	benign(0.167)	deleterious(0.02)	neutral(0.398)	NULL
ADNP	23394	genome.wustl.edu	37	20	49509056	49509056	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015339.2	-1	reviewed	p.L732*	0.896	126	0%	244	26.6%	17	23.5%	-	-	-	NULL
CDH26	60437	genome.wustl.edu	37	20	58564003	58564003	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177980.2	+1	reviewed	p.V356	0.000	94	0%	218	18.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
GTPBP5	26164	genome.wustl.edu	37	20	60775804	60775804	+	Silent	SNP	A	A	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015666.3	+1	validated	p.R298	0.134	26	0%	78	34.6%	44	70.4%	-	-	-	HMMPfam_MMR_HSR1,superfamily_SSF52540
PCNT	5116	genome.wustl.edu	37	21	47852010	47852010	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006031.5	+1	reviewed	p.S2878T	0.010	12	0%	66	22.7%	20	55%	benign(0.003)	tolerated(0.57)	neutral(0.006)	NULL
PRMT2	3275	genome.wustl.edu	37	21	48064353	48064353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001535.2	+1	validated	p.E94K	0.999	109	0%	210	30%	101	42.5%	benign(0.156)	tolerated(0.06)	neutral(0.337)	superfamily_SH3-domain
CLTCL1	8218	genome.wustl.edu	37	22	19175545	19175547	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	TTG	TTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007098.3	-1	reviewed	p.N1460in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat
GAS2L1	10634	genome.wustl.edu	37	22	29708151	29708151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000333679	+1	known	p.S570G	0.982	25	0%	63	17.5%	30	40%	benign(0.135)	deleterious(0.02)	neutral(0.395)	NULL
SEC14L4	284904	genome.wustl.edu	37	22	30887873	30887873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174977.3	-1	reviewed	p.G287C	0.999	17	0%	66	25.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Supernatant protein factor (SPF) C-terminal domain
FBLN1	2192	genome.wustl.edu	37	22	45958823	45958823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001996.2	+1	reviewed	p.R577W	0.996	57	0%	154	20.8%	630	36.5%	possibly_damaging(0.871)	tolerated(0.07)	deleterious(0.657)	superfamily_EGF/Laminin
ENSG00000210082	0	genome.wustl.edu	37	MT	2028	2028	+	RNA	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000387347	+1	known	NULL	NULL	36	0%	46	21.7%	5527	27.8%	-	-	-	-
ENSG00000198888	0	genome.wustl.edu	37	MT	4118	4118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000361390	+1	known	p.L271S	NULL	63	0%	73	28.8%	8007	26.3%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_NADHdh
CRLF2	64109	genome.wustl.edu	37	X	1331521	1331521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381567	-1	known	p.R3W	0.003	33	0%	41	26.8%	0	-	probably_damaging(0.999)	-	-	NULL
ARSH	347527	genome.wustl.edu	37	X	2951222	2951222	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011719.1	+1	validated	p.L495	0.013	108	0%	265	27.2%	4	75%	-	-	-	superfamily_Alkaline_phosphatase_core
FRMPD4	9758	genome.wustl.edu	37	X	12734980	12734980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014728.3	+1	reviewed	p.R801H	1.000	348	0%	656	26.4%	0	-	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
CA5B	11238	genome.wustl.edu	37	X	15768189	15768189	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007220.3	+1	reviewed	p.P15A	0.014	245	0%	479	24.8%	3	0%	benign(0.011)	tolerated(0.27)	neutral(0.034)	NULL
TXLNG	55787	genome.wustl.edu	37	X	16850849	16850850	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018360.2	+1	reviewed	p.R326fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Taxilin
GATA1	2623	genome.wustl.edu	37	X	48650526	48650526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002049.3	+1	reviewed	p.P166T	0.644	283	0%	752	25.5%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
KCND1	3750	genome.wustl.edu	37	X	48826586	48826586	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004979.4	-1	reviewed	p.P31	0.000	9	0.000	30	0.300	3	0%	-	-	-	NULL
MAGIX	79917	genome.wustl.edu	37	X	49021530	49021530	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415364	+1	known	p.S139*	0.003	15	0%	26	38.5%	18	100%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
STARD8	9754	genome.wustl.edu	37	X	67937782	67937782	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142503.2	+1	reviewed	p.R342	1.000	7	0.000	22	0.227	6	0%	-	-	-	NULL
NHSL2	340527	genome.wustl.edu	37	X	71359116	71359116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013627.2	+1	provisional	p.R207L	0.997	40	0%	109	31.2%	1	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
BRWD3	254065	genome.wustl.edu	37	X	79945465	79945465	+	Splice_Site	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153252.4	-1	reviewed	e32+1	1.000	193	0%	262	26%	0	-	-	-	-	-
GPRASP2	114928	genome.wustl.edu	37	X	101972194	101972196	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	TGA	TGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004051.2	+1	reviewed	p.D802in_frame_del	0.505:0.737:0.797	-	-	-	-	-	-	-	-	-	HMMPfam_DUF634,superfamily_ARM-type_fold
NKAP	79576	genome.wustl.edu	37	X	119059328	119059328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024528.3	-1	reviewed	p.R368Q	1.000	219	0%	403	22.8%	50	88%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF926
ODZ1	10178	genome.wustl.edu	37	X	123518518	123518518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.S2081N	1.000	260	0%	395	26.3%	0	-	possibly_damaging(0.659)	tolerated(0.18)	neutral(0.289)	NULL
FAM127C	441518	genome.wustl.edu	37	X	134156430	134156430	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001078173.1	-1	validated	p.A20	0.010	98	0%	192	24.5%	28	0%	-	-	-	NULL
ATP11C	286410	genome.wustl.edu	37	X	138882259	138882259	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GA-01	TCGA-A5-A0GA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173694.4	-1	validated	p.R227*	0.930	223	0%	371	25.6%	1	100%	-	-	-	superfamily_Calcium ATPase transduction domain A
