Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
NADK	65220	genome.wustl.edu	37	1	1689870	1689870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342348	-1	known	p.P34L	0.000	20	0%	39	56.4%	0	-	benign(0.007)	tolerated(0.12)	neutral(0.261)	NULL
PRDM16	63976	genome.wustl.edu	37	1	3102782	3102782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022114.3	+1	reviewed	p.S44L	1.000	8	0.000	8	0.750	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
CHD5	26038	genome.wustl.edu	37	1	6172218	6172218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015557.1	-1	provisional	p.A1708T	1.000	56	0%	74	51.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CHD5	26038	genome.wustl.edu	37	1	6195336	6195336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015557.1	-1	provisional	p.A942T	0.983	32	0%	55	52.7%	0	-	benign(0.002)	tolerated(0.09)	neutral(0.296)	HMMPfam_SNF2_N
PIK3CD	5293	genome.wustl.edu	37	1	9776649	9776649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005026.3	+1	validated	p.Y251C	1.000	8	0.000	7	0.714	1	0%	benign(0.054)	tolerated(0.05)	neutral(0.349)	HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,superfamily_SSF54236
UBR4	23352	genome.wustl.edu	37	1	19473373	19473373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.R2584H	1.000	418	0%	564	42.2%	12	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
HTR6	3362	genome.wustl.edu	37	1	20005635	20005635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000871.1	+1	provisional	p.L366P	1.000	12	0%	34	41.2%	0	-	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	NULL
LUZP1	7798	genome.wustl.edu	37	1	23419384	23419384	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142546.1	-1	reviewed	p.P457	0.039	452	0%	656	40.1%	2	0%	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27056217	27056217	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.Q405*	1.000	167	0%	308	40.3%	5	40%	-	-	-	NULL
GPR3	2827	genome.wustl.edu	37	1	27720968	27720968	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005281.2	+1	provisional	p.R222	1.000	51	0%	105	16.2%	4	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TMEM39B	55116	genome.wustl.edu	37	1	32560409	32560409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018056.2	+1	validated	p.W318R	1.000	43	0%	97	43.3%	28	32.1%	benign(0.314)	deleterious(0)	deleterious(0.542)	HMMPfam_Tmp39
KIAA1522	57648	genome.wustl.edu	37	1	33234340	33234340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020888.2	+1	validated	p.A184T	0.993	57	0%	104	41.3%	21	52.3%	probably_damaging(0.99)	-	-	NULL
GJB4	127534	genome.wustl.edu	37	1	35227579	35227579	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153212.2	+1	reviewed	p.G242*	0.001	64	0%	130	51.5%	0	-	-	-	-	NULL
EIF2C3	192669	genome.wustl.edu	37	1	36492761	36492761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024852.2	+1	reviewed	p.P485S	1.000	108	0%	155	39.4%	6	50%	benign(0.006)	tolerated(0.18)	neutral(0.056)	NULL
RSPO1	284654	genome.wustl.edu	37	1	38082230	38082230	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001038633.2	-1	reviewed	p.Q71P	1.000	57	0%	103	48.5%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMSmart_SM00261,superfamily_Growth factor receptor domain
CTPS	1503	genome.wustl.edu	37	1	41449024	41449024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001905.2	+1	validated	p.S21N	1.000	83	0%	72	45.8%	15	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CTP_synth_N,superfamily_SSF52540
FOXJ3	22887	genome.wustl.edu	37	1	42647697	42647697	+	Splice_Site	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014947.3	-1	validated	e11-2	0.990	24	0%	35	48.6%	0	-	-	-	-	-
SZT2	23334	genome.wustl.edu	37	1	43913828	43913828	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015284.2	+1	predicted	p.K2315	1.000	27	0%	22	27.3%	9	66.6%	-	-	-	NULL
MMACHC	25974	genome.wustl.edu	37	1	45974781	45974781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015506.2	+1	reviewed	p.P248L	0.000	226	0%	256	44.1%	23	39.1%	benign(0.001)	tolerated(0.12)	neutral(0.261)	NULL
MRPL37	51253	genome.wustl.edu	37	1	54675789	54675789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016491.3	+1	reviewed	p.V273M	0.978	139	0%	248	14.1%	224	15.6%	possibly_damaging(0.691)	tolerated(0.12)	deleterious(0.508)	NULL
FAM151A	338094	genome.wustl.edu	37	1	55080533	55080533	+	Splice_Site	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176782.2	-1	validated	e4-1	1.000	51	0%	83	33.7%	0	-	-	-	-	-
MYSM1	114803	genome.wustl.edu	37	1	59134352	59134352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085487.1	-1	provisional	p.E573D	1.000	26	0%	32	62.5%	0	-	probably_damaging(0.981)	tolerated(0.08)	deleterious(0.726)	HMMPfam_Mov34
L1TD1	54596	genome.wustl.edu	37	1	62675691	62675691	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019079.4	+1	validated	p.E415	0.000	216	0%	234	36.3%	0	-	-	-	-	NULL
JAK1	3716	genome.wustl.edu	37	1	65335106	65335106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002227.2	-1	reviewed	p.E179K	1.000	202	0%	332	44.3%	4	0%	possibly_damaging(0.697)	deleterious(0.04)	deleterious(0.599)	HMMSmart_B41
NEGR1	257194	genome.wustl.edu	37	1	72076745	72076745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173808.2	-1	validated	p.P251L	1.000	118	0.8%	190	42.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
CTBS	1486	genome.wustl.edu	37	1	85020878	85020878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004388.2	-1	validated	p.P321H	0.009	98	0%	98	50%	10	20%	benign(0.007)	tolerated(0.22)	neutral(0.042)	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
CLCA4	22802	genome.wustl.edu	37	1	87036798	87036798	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012128.3	+1	reviewed	p.E407	1.000	313	0%	299	40.1%	0	-	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
GLMN	11146	genome.wustl.edu	37	1	92763064	92763064	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053274.2	-1	reviewed	p.F21C	1.000	141	0%	174	43.7%	10	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FKBP12
LRRC39	127495	genome.wustl.edu	37	1	100620648	100620648	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144620.2	-1	provisional	p.L257	0.356	115	0%	111	37.8%	0	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
CDC14A	8556	genome.wustl.edu	37	1	100928278	100928278	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033312.2	+1	reviewed	p.L227V	1.000	170	0%	205	37.6%	6	33.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
AHCYL1	10768	genome.wustl.edu	37	1	110561083	110561083	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006621.4	+1	validated	p.I404	0.989	98	0%	132	43.2%	209	47.8%	-	-	-	HMMPfam_AdoHcyase,HMMPfam_AdoHcyase_NAD,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
FAM40A	85369	genome.wustl.edu	37	1	110591747	110591747	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033088.2	+1	validated	p.Q559E	1.000	45	0%	81	39.5%	12	41.6%	possibly_damaging(0.45)	tolerated(0.38)	neutral(0.165)	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	145015897	145015897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022359.4	-1	validated	p.P135H	0.996	1030	0%	1962	7.4%	3	33.3%	possibly_damaging(0.872)	deleterious(0)	deleterious(0.784)	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	145015939	145015939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022359.4	-1	validated	p.P121L	0.003	874	0%	1639	9.2%	5	0%	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	NULL
ANKRD35	148741	genome.wustl.edu	37	1	145561657	145561657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144698.3	+1	validated	p.A449T	0.000	113	0%	147	33.3%	19	10.5%	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
LCE2B	26239	genome.wustl.edu	37	1	152659379	152659379	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014357.4	+1	reviewed	p.C20	0.243	372	0%	872	28%	0	-	-	-	-	NULL
S100A2	6273	genome.wustl.edu	37	1	153536278	153536278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005978.3	-1	reviewed	p.D25N	0.877	78	0%	105	26.7%	90	37.7%	possibly_damaging(0.919)	tolerated(0.16)	neutral(0.429)	HMMPfam_S_100,superfamily_EF-hand
INTS3	65123	genome.wustl.edu	37	1	153730127	153730127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023015.3	+1	validated	p.R346H	1.000	278	0%	564	31%	32	40.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DUF2356
SHC1	6464	genome.wustl.edu	37	1	154936282	154936282	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130040.1	-1	validated	p.L584	1.000	45	0%	114	33.3%	134	29.1%	-	-	-	NULL
DCST1	149095	genome.wustl.edu	37	1	155007003	155007003	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152494.2	+1	validated	p.L52	1.000	48	0%	160	34.4%	0	-	-	-	-	NULL
GON4L	54856	genome.wustl.edu	37	1	155732136	155732136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037533.1	-1	validated	p.R1586W	1.000	26	0%	75	38.7%	14	28.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RHBG	57127	genome.wustl.edu	37	1	156348180	156348180	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020407.3	+1	reviewed	p.F221	0.997	56	0%	119	16%	1	0%	-	-	-	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
INSRR	3645	genome.wustl.edu	37	1	156814927	156814927	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014215.1	-1	validated	p.A793V	0.993	9	0.000	21	0.476	0	-	benign(0.01)	tolerated(0.25)	neutral(0.037)	HMMSmart_FN3,superfamily_FN_III-like
OR10T2	128360	genome.wustl.edu	37	1	158368423	158368423	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004475.1	-1	provisional	p.Y278	0.623	89	0%	167	28.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SPTA1	6708	genome.wustl.edu	37	1	158612266	158612266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003126.2	-1	reviewed	p.V1558I	0.019	149	0%	203	29.6%	0	-	possibly_damaging(0.652)	tolerated(0.28)	neutral(0.261)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
VSIG8	391123	genome.wustl.edu	37	1	159825869	159825869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013661.1	-1	provisional	p.S259P	0.297	7	0.000	19	0.316	0	-	benign(0.427)	tolerated(0.42)	neutral(0.153)	NULL
CCDC19	25790	genome.wustl.edu	37	1	159842300	159842300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012337.2	-1	validated	p.I544T	0.995	279	0%	610	27%	20	20%	benign(0.009)	tolerated(0.22)	neutral(0.043)	NULL
COPA	1314	genome.wustl.edu	37	1	160261165	160261165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098398.1	-1	reviewed	p.R1136H	1.000	119	0%	309	27.2%	464	35.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COPI_C
NIT1	4817	genome.wustl.edu	37	1	161089617	161089617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005600.1	+1	provisional	p.V156M	0.997	119	0%	257	27.2%	53	33.9%	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase
B4GALT3	8703	genome.wustl.edu	37	1	161141719	161141719	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003779.2	-1	reviewed	p.Y357H	0.912	84	0%	142	12%	167	10.1%	benign(0.04)	tolerated(0.06)	neutral(0.325)	NULL
B4GALT3	8703	genome.wustl.edu	37	1	161143404	161143404	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003779.2	-1	reviewed	p.I265S	1.000	226	0%	526	31.6%	93	31.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
C1orf112	55732	genome.wustl.edu	37	1	169818675	169818675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018186.2	+1	predicted	p.A698V	0.738	128	0%	187	27.8%	20	30%	benign(0.309)	tolerated(0.28)	neutral(0.128)	NULL
FMO3	2328	genome.wustl.edu	37	1	171077276	171077276	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002294.2	+1	reviewed	p.V181fs	0.000	-	-	-	-	-	-	-	-	-	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
PRRC2C	23215	genome.wustl.edu	37	1	171510462	171510462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015172.3	+1	validated	p.G1284D	1.000	264	0%	390	26.4%	18	33.3%	unknown(0)	-	-	NULL
FASLG	356	genome.wustl.edu	37	1	172628583	172628583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000639.1	+1	reviewed	p.L81P	0.094	39	0%	89	27%	0	-	benign(0.282)	deleterious(0)	deleterious(0.531)	NULL
FAM5B	57795	genome.wustl.edu	37	1	177199073	177199073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021165.2	+1	provisional	p.A21S	0.001	47	0%	62	41.9%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
FAM5B	57795	genome.wustl.edu	37	1	177245428	177245428	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021165.2	+1	provisional	p.C290	1.000	74	0%	110	36.4%	1	0%	-	-	-	NULL
CACNA1E	777	genome.wustl.edu	37	1	181724387	181724387	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.C1281	0.970	88	0%	213	27.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SMG7	9887	genome.wustl.edu	37	1	183514365	183514365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173156.2	+1	validated	p.A763V	1.000	315	0%	575	29.7%	39	33.3%	benign(0.12)	tolerated(0.42)	neutral(0.024)	NULL
FAM129A	116496	genome.wustl.edu	37	1	184787849	184787849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052966.2	-1	validated	p.R366C	0.831	267	0%	591	32.7%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HMCN1	83872	genome.wustl.edu	37	1	186077625	186077625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.R3629W	1.000	138	0%	230	20.9%	0	-	possibly_damaging(0.886)	deleterious(0.01)	deleterious(0.752)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
HMCN1	83872	genome.wustl.edu	37	1	186141194	186141194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.R5249C	1.000	250	0.4%	453	32.7%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
PLA2G4A	5321	genome.wustl.edu	37	1	186957626	186957626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024420.2	+1	reviewed	p.K746E	1.000	208	0%	274	24.1%	16	62.5%	possibly_damaging(0.556)	deleterious(0.01)	deleterious(0.595)	NULL
FAM5C	339479	genome.wustl.edu	37	1	190067930	190067930	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199051.1	-1	provisional	p.R507*	0.783	218	0%	416	32%	0	-	-	-	-	NULL
FAM5C	339479	genome.wustl.edu	37	1	190234051	190234051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199051.1	-1	provisional	p.R188G	1.000	115	0%	182	13.7%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00457
KIF21B	23046	genome.wustl.edu	37	1	200972893	200972893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017596.2	-1	provisional	p.A345T	1.000	53	0%	130	23.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
TNNT2	7139	genome.wustl.edu	37	1	201331144	201331144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000364.2	-1	reviewed	p.R203W	0.908	110	0%	185	31.4%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Troponin
LMOD1	25802	genome.wustl.edu	37	1	201868829	201868829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012134.2	-1	reviewed	p.A438T	1.000	80	0%	201	30.3%	3	0%	possibly_damaging(0.718)	tolerated(0.35)	neutral(0.281)	HMMPfam_Tropomodulin,superfamily_SSF52047
SYT2	127833	genome.wustl.edu	37	1	202573647	202573649	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136504.1	-1	validated	p.K93in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PLEKHA6	22874	genome.wustl.edu	37	1	204226650	204226650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014935.2	-1	validated	p.R452H	1.000	20	0%	30	23.3%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	NULL
SLC26A9	115019	genome.wustl.edu	37	1	205901042	205901042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_134325.2	-1	reviewed	p.E166D	0.330	48	0%	99	28.3%	0	-	benign(0.002)	tolerated(1)	-	NULL
LAMB3	3914	genome.wustl.edu	37	1	209807969	209807969	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000228.2	-1	reviewed	p.A129	0.007	39	0%	97	34%	1	100%	-	-	-	HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like
ATF3	467	genome.wustl.edu	37	1	212792856	212792856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030287.2	+1	reviewed	p.L169I	1.000	101	0%	238	28.2%	16	31.2%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
RAB3GAP2	25782	genome.wustl.edu	37	1	220340662	220340662	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012414.3	-1	reviewed	p.Y1020	0.857	173	0%	281	23.8%	12	8.3%	-	-	-	NULL
RAB3GAP2	25782	genome.wustl.edu	37	1	220344243	220344245	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012414.3	-1	reviewed	p.E932in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
WDR26	80232	genome.wustl.edu	37	1	224606036	224606036	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025160.6	-1	reviewed	p.R168	1.000	84	0%	165	28.5%	51	19.6%	-	-	-	superfamily_WD40 repeat-like
LEFTY1	10637	genome.wustl.edu	37	1	226075151	226075151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020997.2	-1	reviewed	p.G229R	0.003	19	0%	33	27.3%	11	18.1%	benign(0.01)	deleterious(0.05)	neutral(0.346)	HMMPfam_TGFb_propeptide
ITPKB	3707	genome.wustl.edu	37	1	226923391	226923391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002221.3	-1	reviewed	p.R590Q	0.000	30	0%	43	27.9%	23	30.4%	benign(0.116)	deleterious(0.05)	neutral(0.354)	NULL
WNT3A	89780	genome.wustl.edu	37	1	228246978	228246978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033131.2	+1	reviewed	p.G291S	1.000	4	0.000	14	0.429	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_wnt,HMMSmart_WNT1
HEATR1	55127	genome.wustl.edu	37	1	236760224	236760224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018072.4	-1	validated	p.F219S	1.000	156	0%	378	28.6%	8	37.5%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ACTN2	88	genome.wustl.edu	37	1	236918434	236918434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103.2	+1	reviewed	p.G697V	1.000	209	0%	431	28.1%	0	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
MTR	4548	genome.wustl.edu	37	1	237023145	237023145	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000254.2	+1	reviewed	p.G656*	1.000	130	0.8%	278	29.9%	8	0%	-	-	-	NULL
FMN2	56776	genome.wustl.edu	37	1	240286511	240286511	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020066.4	+1	validated	p.Q550*	1.000	150	0%	337	32.6%	0	-	-	-	-	NULL
CHML	1122	genome.wustl.edu	37	1	241797474	241797474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001821.3	-1	reviewed	p.P532L	0.057	172	0%	170	30.6%	5	20%	benign(0.177)	tolerated(0.18)	neutral(0.073)	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain
TFB2M	64216	genome.wustl.edu	37	1	246729393	246729393	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022366.2	-1	validated	p.L17fs	0.000	-	-	-	-	-	-	-	-	-	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247013926	247013926	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015446.4	-1	validated	p.R1794	0.000	211	0%	379	23%	15	20%	-	-	-	NULL
ZNF496	84838	genome.wustl.edu	37	1	247463860	247463860	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032752.1	-1	provisional	p.H575	1.000	22	0%	41	22%	24	29.1%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
OR2C3	81472	genome.wustl.edu	37	1	247695158	247695158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198074.4	-1	validated	p.Y219C	0.908	107	0%	192	31.2%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_7tm_1,superfamily_SSF81321
OR14K1	343170	genome.wustl.edu	37	1	247902807	247902807	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000283225	+1	known	p.S297	0.000	121	0%	190	21.6%	0	-	-	-	-	superfamily_SSF81321
OR2T2	401992	genome.wustl.edu	37	1	248616359	248616359	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004136.1	+1	provisional	p.L87	0.009	420	0%	854	11.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PGBD2	267002	genome.wustl.edu	37	1	249211520	249211520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170725.2	+1	validated	p.R246K	0.998	331	0%	592	30.4%	13	38.4%	probably_damaging(0.987)	deleterious(0.04)	deleterious(0.785)	NULL
PXDN	7837	genome.wustl.edu	37	2	1652393	1652393	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012293.1	-1	validated	p.Y1053	0.998	26	0%	36	44.4%	2	0%	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
COLEC11	78989	genome.wustl.edu	37	2	3652002	3652002	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024027.3	+1	validated	p.H24Q	0.005	63	0%	77	42.9%	0	-	benign(0.027)	tolerated(0.3)	neutral(0.030)	NULL
TRIB2	28951	genome.wustl.edu	37	2	12863394	12863394	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021643.3	+1	reviewed	p.D93	1.000	63	0%	67	43.3%	13	38.4%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PUM2	23369	genome.wustl.edu	37	2	20482731	20482731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015317.1	-1	provisional	p.A566V	1.000	117	0%	181	38.7%	31	35.4%	possibly_damaging(0.894)	deleterious(0.02)	deleterious(0.735)	NULL
ADCY3	109	genome.wustl.edu	37	2	25095482	25095482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004036.3	-1	reviewed	p.S261L	1.000	192	0%	289	37%	6	33.3%	probably_damaging(0.997)	deleterious(0.05)	deleterious(0.811)	NULL
WDR43	23160	genome.wustl.edu	37	2	29152462	29152462	+	Silent	SNP	T	T	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015131.1	+1	validated	p.R441	1.000	128	0%	119	38.7%	45	44.4%	-	-	-	superfamily_WD40_like
BIRC6	57448	genome.wustl.edu	37	2	32703729	32703729	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016252.3	+1	reviewed	p.T2365	0.001	153	0%	170	50%	4	25%	-	-	-	NULL
PSME4	23198	genome.wustl.edu	37	2	54163958	54163958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014614.2	-1	validated	p.W234C	1.000	175	0%	198	34.8%	9	55.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PNPT1	87178	genome.wustl.edu	37	2	55874510	55874510	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033109.3	-1	validated	p.E525A	1.000	122	0%	102	52%	36	44.4%	benign(0.055)	tolerated(0.37)	neutral(0.022)	HMMPfam_RNase_PH_C,superfamily_3_ExoRNase
ETAA1	54465	genome.wustl.edu	37	2	67631733	67631733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019002.3	+1	validated	p.N640S	0.090	277	0%	336	45.5%	9	55.5%	unknown(0)	tolerated(0.53)	-	NULL
LOXL3	84695	genome.wustl.edu	37	2	74779707	74779707	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032603.2	-1	reviewed	p.L19	0.898	16	0%	21	42.9%	1	0%	-	-	-	NULL
C2orf29	55571	genome.wustl.edu	37	2	101869794	101869794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017546.4	+1	validated	p.Q123R	1.000	10	0%	10	60%	35	54.2%	probably_damaging(0.958)	deleterious(0.03)	deleterious(0.766)	NULL
POLR1B	84172	genome.wustl.edu	37	2	113317033	113317033	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019014.4	+1	validated	p.C498	0.834	191	0%	190	48.4%	13	69.2%	-	-	-	HMMPfam_RNA_pol_Rpb2_3,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
POLR1B	84172	genome.wustl.edu	37	2	113322066	113322066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019014.4	+1	validated	p.R579H	1.000	305	0%	389	45.8%	11	54.5%	unknown(0)	-	-	HMMPfam_RNA_pol_Rpa2_4,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
CLASP1	23332	genome.wustl.edu	37	2	122120862	122120862	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015282.2	-1	validated	p.A1364	0.227	113	0%	142	44.4%	13	38.4%	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
SAP130	79595	genome.wustl.edu	37	2	128703107	128703107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024545.3	-1	validated	p.I933V	1.000	146	0%	235	46.8%	53	39.6%	benign(0.002)	tolerated(0.81)	neutral(0.001)	NULL
UGGT1	56886	genome.wustl.edu	37	2	128867290	128867290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020120.3	+1	validated	p.L164P	0.059	93	0%	117	53.8%	4	25%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TUBA3E	112714	genome.wustl.edu	37	2	130952040	130952040	+	Splice_Site	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207312.2	-1	validated	e4-1	1.000	71	0%	96	41.7%	0	-	-	-	-	-
NCKAP5	344148	genome.wustl.edu	37	2	133489551	133489551	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207363.2	-1	validated	p.S1734	0.000	77	0%	100	46%	1	100%	-	-	-	NULL
R3HDM1	23518	genome.wustl.edu	37	2	136479545	136479545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015361.2	+1	provisional	p.A943V	1.000	81	0%	108	13%	58	18.9%	benign(0.088)	deleterious(0.04)	neutral(0.355)	NULL
LRP1B	53353	genome.wustl.edu	37	2	141806579	141806579	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.E589Q	0.323	317	0%	256	42.2%	0	-	possibly_damaging(0.736)	tolerated(0.43)	neutral(0.283)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
ZEB2	9839	genome.wustl.edu	37	2	145156904	145156904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014795.3	-1	reviewed	p.H617R	0.999	210	0%	245	49%	2	0%	benign(0.126)	tolerated(0.44)	neutral(0.023)	NULL
LYPD6B	130576	genome.wustl.edu	37	2	150061828	150061828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177964.3	+1	provisional	p.A47T	0.019	219	0%	307	41.7%	4	50%	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	NULL
RIF1	55183	genome.wustl.edu	37	2	152308206	152308206	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000414861	+1	known	p.A769T	0.382	97	0%	96	41.7%	1	0%	-	-	-	NULL
NEB	4703	genome.wustl.edu	37	2	152381033	152381033	+	Missense_Mutation	SNP	C	C	T	rs142454476	by1000genomes	TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.S5756N	1.000	235	0%	264	41.3%	1	0%	probably_damaging(0.994)	tolerated(0.11)	deleterious(0.724)	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152397281	152397281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.P5205L	0.998	124	0%	175	45.1%	0	-	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	NULL
ACVR1	90	genome.wustl.edu	37	2	158626918	158626918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105.4	-1	reviewed	p.L251S	1.000	306	0%	392	43.6%	35	37.1%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Kinase_like,HMMPfam_Pkinase
PKP4	8502	genome.wustl.edu	37	2	159477827	159477827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003628.3	+1	reviewed	p.S166N	1.000	142	0%	219	44.3%	49	51%	benign(0)	tolerated(1)	-	NULL
PLA2R1	22925	genome.wustl.edu	37	2	160884860	160884860	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007366.3	-1	validated	p.E323V	1.000	248	0%	245	42.4%	3	66.6%	benign(0.103)	tolerated(0.24)	neutral(0.045)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
PLA2R1	22925	genome.wustl.edu	37	2	160901516	160901516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007366.3	-1	validated	p.G88S	0.002	161	0%	250	49.6%	2	50%	benign(0.038)	tolerated(0.2)	neutral(0.051)	HMMSmart_SM00458,superfamily_Ricin B-like lectins
SCN1A	6323	genome.wustl.edu	37	2	166850722	166850722	+	Missense_Mutation	SNP	G	G	A	rs121917993	byCluster	TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006920.4	-1	reviewed	p.R1585C	1.000	127	0%	140	45.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
PPIG	9360	genome.wustl.edu	37	2	170487312	170487314	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	ATC	ATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004792.2	+1	validated	p.S196in_frame_del	0.909:0.999:1.000	-	-	-	-	-	-	-	-	-	NULL
PPIG	9360	genome.wustl.edu	37	2	170493862	170493862	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004792.2	+1	validated	p.D698	1.000	137	0%	130	40.8%	21	23.8%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179410818	179410818	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.S29147*	1.000	202	0%	235	47.7%	0	-	-	-	-	NULL
STAT1	6772	genome.wustl.edu	37	2	191848369	191848369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007315.3	-1	reviewed	p.R482M	1.000	109	0%	125	32.8%	65	47.6%	possibly_damaging(0.746)	deleterious(0)	deleterious(0.719)	superfamily_p53-like transcription factors,HMMPfam_STAT_bind
PLCL1	5334	genome.wustl.edu	37	2	198950816	198950816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006226.3	+1	validated	p.R761C	1.000	178	0%	247	44.9%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RAPH1	65059	genome.wustl.edu	37	2	204305185	204305185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213589.1	-1	validated	p.P910T	0.030	20	0%	43	27.9%	4	50%	benign(0.344)	deleterious(0.02)	deleterious(0.491)	NULL
ACADL	33	genome.wustl.edu	37	2	211057554	211057554	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001608.3	-1	reviewed	p.G391	0.870	134	0%	120	43.3%	8	37.5%	-	-	-	PatternScan_ACYL_COA_DH_2,HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like
ZNF142	7701	genome.wustl.edu	37	2	219509479	219509481	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	GTG	GTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105537.1	-1	validated	p.T587in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF142	7701	genome.wustl.edu	37	2	219515090	219515090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105537.1	-1	validated	p.R147L	0.029	289	0%	350	43.1%	5	60%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
CYP27A1	1593	genome.wustl.edu	37	2	219679347	219679347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000784.3	+1	reviewed	p.R448H	1.000	63	0%	95	43.2%	45	37.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome P450
CNPPD1	27013	genome.wustl.edu	37	2	220038191	220038191	+	Splice_Site	SNP	T	T	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015680.4	-1	validated	e7-2	1.000	56	0%	74	39.2%	0	-	-	-	-	-
SLC4A3	6508	genome.wustl.edu	37	2	220500069	220500069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201574.2	+1	validated	p.S635N	1.000	50	0%	51	29.4%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
SLC4A3	6508	genome.wustl.edu	37	2	220504227	220504227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201574.2	+1	validated	p.R1043Q	0.981	49	0%	93	16.1%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HCO3_cotransp
IRS1	3667	genome.wustl.edu	37	2	227662285	227662285	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005544.2	-1	reviewed	p.V390	1.000	36	0%	33	27.3%	4	0%	-	-	-	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233651941	233651941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103147.1	+1	reviewed	p.R227H	1.000	107	0.9%	163	42.9%	14	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UGT1A4	54657	genome.wustl.edu	37	2	234676504	234676504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007120.2	+1	reviewed	p.R337W	1.000	226	0%	308	39.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
MLPH	79083	genome.wustl.edu	37	2	238461048	238461048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024101.5	+1	reviewed	p.A582T	0.864	133	0%	200	45%	304	46%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
OR6B3	150681	genome.wustl.edu	37	2	240984579	240984579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173351.1	-1	provisional	p.A304V	0.000	231	0%	332	42.8%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	superfamily_SSF81321
ATG4B	23192	genome.wustl.edu	37	2	242606085	242606085	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013325.4	+1	reviewed	p.P188	0.000	18	0%	25	40%	70	50%	-	-	-	HMMPfam_Peptidase_C54
DTYMK	1841	genome.wustl.edu	37	2	242615606	242615606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012145.3	-1	validated	p.R192H	0.000	7	0.000	20	0.450	236	51.6%	benign(0.014)	deleterious(0.04)	neutral(0.349)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CXXC11	285093	genome.wustl.edu	37	2	242814257	242814257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173821.2	+1	validated	p.R184G	0.000	4	0.000	13	0.462	0	-	possibly_damaging(0.485)	tolerated(0.34)	neutral(0.184)	NULL
CHL1	10752	genome.wustl.edu	37	3	432751	432751	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000445697	+1	known	p.P87H	0.280	114	0%	99	42.4%	0	-	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
PRRT3	285368	genome.wustl.edu	37	3	9991717	9991717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207351.3	-1	validated	p.R28M	0.250	37	0%	40	62.5%	0	-	possibly_damaging(0.677)	deleterious(0)	deleterious(0.685)	NULL
MKRN2	23609	genome.wustl.edu	37	3	12610446	12610446	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014160.3	+1	provisional	p.P33	0.782	90	0%	119	37.8%	28	50%	-	-	-	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1
GRIP2	80852	genome.wustl.edu	37	3	14537992	14537992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080423.1	-1	provisional	p.R1017Q	0.004	9	0.000	15	0.333	1	0%	-	-	-	superfamily_PDZ domain-like
CNOT10	25904	genome.wustl.edu	37	3	32750219	32750219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015442.1	+1	provisional	p.Y113H	1.000	135	0%	117	43.6%	20	45%	possibly_damaging(0.805)	tolerated(0.29)	neutral(0.332)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
TRANK1	9881	genome.wustl.edu	37	3	36898034	36898034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014831.2	-1	provisional	p.A466V	0.802	276	0%	424	44.6%	0	-	possibly_damaging(0.604)	deleterious(0)	deleterious(0.654)	NULL
SLC25A38	54977	genome.wustl.edu	37	3	39431010	39431010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017875.2	+1	reviewed	p.L32M	0.992	146	0%	266	41%	94	59.5%	benign(0.03)	tolerated(0.21)	neutral(0.045)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
KIF15	56992	genome.wustl.edu	37	3	44856496	44856496	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453693	+1	known	p.R12*	0.866	160	0%	216	39.8%	9	88.8%	benign(0.011)	deleterious(0.01)	neutral(0.406)	NULL
NBEAL2	23218	genome.wustl.edu	37	3	47047676	47047676	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000443829	+1	known	p.C682*	1.000	26	0%	24	33.3%	31	48.3%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	HMMPfam_Beach,superfamily_BEACH domain,superfamily_WD40 repeat-like
COL7A1	1294	genome.wustl.edu	37	3	48613155	48613155	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000094.3	-1	reviewed	p.E1961	0.406	25	0%	35	57.1%	1	0%	-	-	-	NULL
CELSR3	1951	genome.wustl.edu	37	3	48696892	48696892	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001407.2	-1	reviewed	p.D1059G	1.000	190	0%	214	45.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
CCDC36	339834	genome.wustl.edu	37	3	49294000	49294000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135197.1	+1	validated	p.C357Y	0.000	203	0%	246	14.6%	0	-	possibly_damaging(0.7)	deleterious(0)	deleterious(0.696)	NULL
ABHD6	57406	genome.wustl.edu	37	3	58260449	58260449	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020676.5	+1	validated	p.A196	0.000	127	0%	213	39.9%	3	66.6%	-	-	-	HMMPfam_Abhydrolase_1,superfamily_SSF53474
ABHD6	57406	genome.wustl.edu	37	3	58279485	58279485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020676.5	+1	validated	p.L336P	0.984	58	0%	77	50.6%	8	50%	benign(0.139)	tolerated(0.05)	neutral(0.357)	NULL
CNTN3	5067	genome.wustl.edu	37	3	74420383	74420383	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020872.1	-1	validated	p.L208	0.014	75	0%	78	14.1%	0	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
GBE1	2632	genome.wustl.edu	37	3	81586221	81586221	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000264326	-1	known	p.W548*	1.000	84	0%	87	29.9%	92	0%	-	-	-	HMMSmart_SM00642,superfamily_(Trans)glycosidases
NFKBIZ	64332	genome.wustl.edu	37	3	101575921	101575921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031419.2	+1	reviewed	p.R610L	1.000	284	0%	281	40.2%	6	33.3%	possibly_damaging(0.603)	tolerated(0.2)	neutral(0.258)	HMMPfam_Ank,superfamily_Ankyrin repeat
CCDC54	84692	genome.wustl.edu	37	3	107097143	107097143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032600.2	+1	provisional	p.P237S	0.000	346	0%	411	15.3%	0	-	benign(0)	tolerated(1)	-	NULL
CD96	10225	genome.wustl.edu	37	3	111263921	111263921	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198196.2	+1	reviewed	p.E30	0.015	229	0%	285	41.1%	3	0%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
BOC	91653	genome.wustl.edu	37	3	112999472	112999472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033254.2	+1	validated	p.S757N	1.000	109	0%	133	42.1%	9	55.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
WDR52	55779	genome.wustl.edu	37	3	113127958	113127958	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018338.3	-1	validated	p.H295	1.000	238	0%	383	39.4%	3	33.3%	-	-	-	HMMSmart_WD40,superfamily_WD40_like
KIAA2018	205717	genome.wustl.edu	37	3	113379312	113379312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009899.2	-1	validated	p.S406Y	1.000	206	0%	298	16.8%	2	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
KIAA1407	57577	genome.wustl.edu	37	3	113761664	113761664	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020817.1	-1	predicted	p.T101A	0.991	185	0.5%	227	40.1%	0	-	benign(0.005)	tolerated(0.28)	neutral(0.032)	NULL
ZBTB20	26137	genome.wustl.edu	37	3	114070044	114070044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015642.4	-1	validated	p.R221H	1.000	69	0%	81	48.1%	0	-	possibly_damaging(0.646)	deleterious(0)	deleterious(0.671)	NULL
GOLGB1	2804	genome.wustl.edu	37	3	121386334	121386334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004487.3	-1	validated	p.E3176D	1.000	115	0%	237	44.3%	111	54.9%	possibly_damaging(0.495)	tolerated(0.22)	neutral(0.207)	NULL
ZNF148	7707	genome.wustl.edu	37	3	124998006	124998006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021964.2	-1	validated	p.T182M	1.000	203	0%	194	39.7%	15	26.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CCDC37	348807	genome.wustl.edu	37	3	126137497	126137497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182628.2	+1	validated	p.T177M	0.001	19	0%	10	50%	0	-	benign(0.002)	tolerated(0.19)	neutral(0.050)	NULL
IFT122	55764	genome.wustl.edu	37	3	129214403	129214403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052985.2	+1	reviewed	p.L772I	1.000	102	0%	101	48.5%	42	50%	benign(0.418)	tolerated(0.15)	neutral(0.377)	NULL
ASTE1	28990	genome.wustl.edu	37	3	130743356	130743356	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014065.2	-1	validated	p.H265Q	0.219	99	0%	160	42.5%	3	100%	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
PCCB	5096	genome.wustl.edu	37	3	136035818	136035818	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000532.4	+1	reviewed	p.P334	0.990	193	0%	297	46.8%	145	56.5%	-	-	-	HMMPfam_Carboxyl_trans,superfamily_SSF52096
CLDN18	51208	genome.wustl.edu	37	3	137729080	137729080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016369.3	+1	validated	p.T5A	0.097	31	0%	45	33.3%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_PMP22_Claudin
COPB2	9276	genome.wustl.edu	37	3	139076709	139076709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004766.2	-1	validated	p.D906G	1.000	89	0%	68	39.7%	240	45.8%	benign(0.052)	deleterious(0)	neutral(0.448)	NULL
ZIC1	7545	genome.wustl.edu	37	3	147128502	147128502	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003412.3	+1	reviewed	p.N201	1.000	23	0%	39	48.7%	0	-	-	-	-	NULL
SI	6476	genome.wustl.edu	37	3	164755764	164755764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.A784T	0.357	94	0%	89	12.4%	0	-	benign(0.062)	tolerated(0.59)	neutral(0.009)	HMMPfam_Glyco_hydro_31
SERPINI1	5274	genome.wustl.edu	37	3	167512574	167512575	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122752.1	+1	reviewed	p.S282fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
PRKCI	5584	genome.wustl.edu	37	3	169981188	169981188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002740.5	+1	reviewed	p.R112H	1.000	108	0%	134	35.8%	19	47.3%	possibly_damaging(0.443)	tolerated(0.13)	neutral(0.397)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916936	178916936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.R108H	1.000	183	0.5%	214	39.3%	3	100%	possibly_damaging(0.945)	tolerated(0.06)	deleterious(0.712)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236
PIK3CA	5290	genome.wustl.edu	37	3	178922306	178922306	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.G359R	1.000	123	0%	149	43%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_C2,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
PEX5L	51555	genome.wustl.edu	37	3	179537733	179537733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016559.1	-1	provisional	p.A285V	1.000	119	0%	151	25.2%	0	-	possibly_damaging(0.903)	tolerated(0.25)	neutral(0.395)	NULL
FAM131A	131408	genome.wustl.edu	37	3	184062419	184062419	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144635.4	+1	validated	p.C223	1.000	77	0%	99	44.4%	13	30.7%	-	-	-	NULL
RTP1	132112	genome.wustl.edu	37	3	186917621	186917621	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153708.2	+1	validated	p.R185	0.968	57	0%	68	51.5%	0	-	-	-	-	NULL
MB21D2	151963	genome.wustl.edu	37	3	192517074	192517074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178496.3	-1	validated	p.S193G	1.000	226	0%	186	44.1%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
TNK2	10188	genome.wustl.edu	37	3	195608985	195608985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010938.1	-1	reviewed	p.R338Q	1.000	38	0%	46	32.6%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
WHSC2	7469	genome.wustl.edu	37	4	1985399	1985399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005663.3	-1	reviewed	p.Q453H	1.000	33	0%	26	26.9%	72	41.6%	probably_damaging(0.983)	tolerated(0.38)	neutral(0.447)	NULL
WHSC2	7469	genome.wustl.edu	37	4	2010661	2010661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005663.3	-1	reviewed	p.T20M	1.000	6	0.000	10	0.600	42	45.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STIM2	57620	genome.wustl.edu	37	4	27019390	27019390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020860.3	+1	reviewed	p.R603H	0.990	315	0%	469	40.7%	27	55.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
WDR19	57728	genome.wustl.edu	37	4	39230268	39230268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025132.3	+1	reviewed	p.D647G	0.002	336	0%	429	41.7%	9	44.4%	benign(0.055)	tolerated(0.23)	neutral(0.045)	NULL
RFC1	5981	genome.wustl.edu	37	4	39310319	39310319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002913.3	-1	reviewed	p.A608T	1.000	375	0%	466	44%	22	54.5%	probably_damaging(0.975)	tolerated(0.15)	deleterious(0.658)	superfamily_SSF52540
DCUN1D4	23142	genome.wustl.edu	37	4	52757987	52757987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040402.1	+1	validated	p.Q159R	1.000	254	0%	188	42.6%	11	9%	possibly_damaging(0.723)	deleterious(0.05)	deleterious(0.608)	NULL
LNX1	84708	genome.wustl.edu	37	4	54374173	54374173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126328.1	-1	reviewed	p.G201D	0.943	82	0%	98	39.8%	8	37.5%	possibly_damaging(0.712)	deleterious(0.01)	deleterious(0.663)	NULL
EPHA5	2044	genome.wustl.edu	37	4	66356292	66356292	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004439.5	-1	reviewed	p.A402E	1.000	111	0%	139	44.6%	0	-	benign(0.062)	tolerated(0.42)	neutral(0.018)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SHROOM3	57619	genome.wustl.edu	37	4	77660104	77660104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020859.3	+1	validated	p.Y260H	1.000	108	0%	109	11.9%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC10A6	345274	genome.wustl.edu	37	4	87754552	87754552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_197965.2	-1	validated	p.V135M	0.976	176	0%	263	45.6%	0	-	benign(0.004)	tolerated(0.06)	neutral(0.323)	HMMPfam_SBF
AFF1	4299	genome.wustl.edu	37	4	88047479	88047479	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005935.2	+1	validated	p.S927	0.000	86	0%	115	47%	10	70%	-	-	-	HMMPfam_AF-4
SPP1	6696	genome.wustl.edu	37	4	88902824	88902824	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040058.1	+1	validated	p.T138	0.003	192	0%	279	47%	43	23.2%	-	-	-	HMMPfam_Osteopontin,HMMSmart_SM00017
UNC5C	8633	genome.wustl.edu	37	4	96140217	96140217	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003728.2	-1	reviewed	p.S516	0.969	193	0%	307	44.6%	0	-	-	-	-	NULL
PDHA2	5161	genome.wustl.edu	37	4	96762429	96762429	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005390.4	+1	validated	p.R376	0.999	196	0%	234	44.9%	0	-	-	-	-	superfamily_SSF52518
H2AFZ	3015	genome.wustl.edu	37	4	100870532	100870532	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002106.3	-1	reviewed	p.G31	1.000	39	0%	40	45%	2425	41.7%	-	-	-	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold
MANBA	4126	genome.wustl.edu	37	4	103644180	103644180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005908.3	-1	reviewed	p.V133M	0.000	133	0.8%	158	39.2%	8	100%	benign(0.003)	tolerated(0.21)	neutral(0.044)	superfamily_Gal_bind_like
TET2	54790	genome.wustl.edu	37	4	106156398	106156398	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127208.1	+1	validated	p.E433	1.000	266	0%	382	40.1%	1	100%	-	-	-	NULL
COL25A1	84570	genome.wustl.edu	37	4	109766364	109766364	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198721.1	-1	validated	p.P520R	0.998	390	0%	544	44.3%	0	-	probably_damaging(0.997)	-	-	NULL
SYNPO2	171024	genome.wustl.edu	37	4	119951232	119951232	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000504178	+1	known	p.S386G	0.001	196	0%	295	41.7%	0	-	-	-	-	NULL
TNIP3	79931	genome.wustl.edu	37	4	122068325	122068325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128843.1	-1	validated	p.Q205R	0.999	155	0%	110	50.9%	0	-	possibly_damaging(0.595)	tolerated(0.5)	neutral(0.216)	NULL
INPP4B	8821	genome.wustl.edu	37	4	143324148	143324148	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000507462	-1	known	p.*39R	1.000	73	0%	141	47.5%	1	100%	-	-	-	NULL
ARHGAP10	79658	genome.wustl.edu	37	4	148886206	148886206	+	Silent	SNP	G	G	A	rs138656417	by1000genomes	TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000507661	+1	known	p.D172N	0.909	112	0%	53	43.4%	7	28.5%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
PET112	5188	genome.wustl.edu	37	4	152622627	152622627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004564.2	-1	validated	p.A351T	0.000	52	0%	100	43%	29	27.5%	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_GatB
MFAP3L	9848	genome.wustl.edu	37	4	170913336	170913336	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021647.6	-1	validated	p.R141	0.771	183	0%	247	42.5%	31	48.3%	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ADAM29	11086	genome.wustl.edu	37	4	175897577	175897577	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130703.1	+1	reviewed	p.G301*	0.000	281	0.4%	368	44.6%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
NEIL3	55247	genome.wustl.edu	37	4	178256851	178256851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000513321	+1	known	p.R56W	0.999	125	0%	89	49.4%	3	100%	benign(0.016)	tolerated(0.11)	neutral(0.272)	NULL
TLR3	7098	genome.wustl.edu	37	4	187000132	187000132	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003265.2	+1	reviewed	p.F194V	1.000	51	0%	70	51.4%	1	100%	benign(0.004)	deleterious(0.01)	neutral(0.406)	superfamily_SSF52058
FAT1	2195	genome.wustl.edu	37	4	187630273	187630273	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.I237F	0.537	244	0%	353	42.5%	6	66.6%	benign(0)	tolerated(0.8)	neutral(0.001)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
SLC6A19	340024	genome.wustl.edu	37	5	1216894	1216894	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000452116	+1	known	p.S339	0.000	26	0%	59	25.4%	0	-	-	-	-	NULL
TERT	7015	genome.wustl.edu	37	5	1282723	1282723	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198253.2	-1	reviewed	p.P530	0.036	20	0%	69	27.5%	0	-	-	-	-	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5462323	5462326	+	Frame_Shift_Del	DEL	TCTC	TCTC	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	TCTC	TCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015325.1	+1	validated	p.S960fs	0.212:0.200:0.157:0.095	-	-	-	-	-	-	-	-	-	NULL
SRD5A1	6715	genome.wustl.edu	37	5	6656237	6656237	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000513117	+1	known	p.S114P	0.925	46	0%	81	42%	15	53.3%	unknown(0)	-	-	NULL
MARCH6	10299	genome.wustl.edu	37	5	10382056	10382056	+	Splice_Site	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005885.2	+1	provisional	e4+1	1.000	330	0%	302	19.9%	0	-	-	-	-	-
DNAH5	1767	genome.wustl.edu	37	5	13721312	13721312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.E4026K	1.000	168	0%	216	25.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Dynein_heavy
SPEF2	79925	genome.wustl.edu	37	5	35740302	35740302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024867.3	+1	validated	p.F1088S	1.000	382	0%	494	40.3%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RAB3C	115827	genome.wustl.edu	37	5	58147035	58147035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138453.2	+1	provisional	p.K181E	1.000	275	0%	373	41.8%	0	-	probably_damaging(0.958)	tolerated(1)	neutral(0.402)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
SREK1IP1	285672	genome.wustl.edu	37	5	64036992	64036992	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173829.3	-1	validated	p.R33*	1.000	136	0%	112	27.7%	20	15%	-	-	-	NULL
TRIM23	373	genome.wustl.edu	37	5	64905096	64905096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001656.3	-1	reviewed	p.L340I	1.000	146	0%	209	33%	4	100%	possibly_damaging(0.942)	tolerated(0.58)	neutral(0.392)	HMMSmart_SM00502
MAP1B	4131	genome.wustl.edu	37	5	71482547	71482547	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005909.3	+1	validated	p.F159Y	1.000	178	0%	199	42.2%	1	100%	benign(0)	tolerated(1)	-	NULL
MAP1B	4131	genome.wustl.edu	37	5	71495910	71495910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005909.3	+1	validated	p.T2243N	1.000	529	0%	601	39.9%	0	-	unknown(0)	tolerated(0.26)	-	NULL
TNPO1	3842	genome.wustl.edu	37	5	72192976	72192976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002270.3	+1	reviewed	p.T779I	1.000	54	0%	70	14.3%	50	0%	possibly_damaging(0.439)	deleterious(0.01)	deleterious(0.548)	superfamily_ARM repeat
PDE8B	8622	genome.wustl.edu	37	5	76714070	76714070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003719.2	+1	validated	p.L643S	1.000	65	0%	65	53.8%	1	100%	possibly_damaging(0.592)	tolerated(0.11)	deleterious(0.476)	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
CMYA5	202333	genome.wustl.edu	37	5	79041213	79041213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153610.3	+1	validated	p.A3635T	1.000	258	0%	359	44.8%	0	-	probably_damaging(0.974)	deleterious(0.02)	deleterious(0.799)	NULL
SERINC5	256987	genome.wustl.edu	37	5	79498729	79498729	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178276.5	-1	validated	p.T57	0.013	75	0%	110	41.8%	30	36.6%	-	-	-	HMMPfam_Serinc
RASA1	5921	genome.wustl.edu	37	5	86685341	86685341	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002890.1	+1	reviewed	p.Q1019	1.000	235	0%	273	41%	32	40.6%	-	-	-	HMMSmart_SM00323,superfamily_GTPase activation domain GAP
ARRDC3	57561	genome.wustl.edu	37	5	90672560	90672560	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020801.2	-1	validated	p.R130*	1.000	87	0%	68	44.1%	24	16.6%	-	-	-	HMMPfam_Arrestin_N,superfamily_Ig_E-set
GLRX	2745	genome.wustl.edu	37	5	95152248	95152248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001118890.1	-1	validated	p.T97M	0.000	142	0%	241	41.9%	42	61.9%	benign(0.003)	tolerated(0.12)	neutral(0.261)	superfamily_Thioredoxin-like
CAST	831	genome.wustl.edu	37	5	96089823	96089823	+	Missense_Mutation	SNP	A	A	T	rs77616199		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001750.5	+1	reviewed	p.E528D	0.994	96	0%	96	33.3%	28	32.1%	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	HMMPfam_Calpain_inhib
ERAP1	51752	genome.wustl.edu	37	5	96124288	96124288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016442.3	-1	validated	p.V542A	0.968	135	0%	209	32.5%	25	20%	possibly_damaging(0.875)	tolerated(0.15)	deleterious(0.581)	NULL
CAMK4	814	genome.wustl.edu	37	5	110814130	110814130	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001744.3	+1	reviewed	p.F251	1.000	252	0%	250	12%	0	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
APC	324	genome.wustl.edu	37	5	112179432	112179432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000038.4	+1	reviewed	p.R2714H	0.631	198	0%	285	46.7%	17	52.9%	benign(0.323)	tolerated(0.12)	neutral(0.362)	HMMPfam_EB1_binding
AQPEP	206338	genome.wustl.edu	37	5	115327946	115327946	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173800.4	+1	validated	p.Y411F	0.000	146	0%	194	46.9%	0	-	benign(0)	tolerated(0.52)	neutral(0.009)	"HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"
DTWD2	285605	genome.wustl.edu	37	5	118280305	118280305	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173666.2	-1	validated	p.A86	0.164	116	0%	160	45.6%	1	100%	-	-	-	HMMPfam_DTW
DMXL1	1657	genome.wustl.edu	37	5	118482611	118482611	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005509.4	+1	validated	p.H883Q	0.979	108	0%	108	35.2%	0	-	benign(0.001)	tolerated(0.12)	neutral(0.261)	superfamily_WD40 repeat-like
HSD17B4	3295	genome.wustl.edu	37	5	118813175	118813175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000414.2	+1	reviewed	p.M138T	1.000	231	0.4%	210	43.3%	86	56.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_adh_short,superfamily_NAD(P)-bd
REEP2	51308	genome.wustl.edu	37	5	137781176	137781176	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016606.2	+1	provisional	p.S193	0.033	96	0%	89	49.4%	5	60%	-	-	-	NULL
CXXC5	51523	genome.wustl.edu	37	5	139060428	139060428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016463.7	+1	provisional	p.A107V	0.981	9	0.000	18	0.444	4	25%	benign(0.083)	deleterious(0.04)	neutral(0.355)	NULL
PFDN1	5201	genome.wustl.edu	37	5	139625615	139625615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002622.4	-1	reviewed	p.V105I	1.000	12	0.000	8	0.625	131	39.6%	benign(0.119)	deleterious(0.04)	neutral(0.358)	HMMPfam_Prefoldin_2,superfamily_Prefoldin
PCDHA7	56141	genome.wustl.edu	37	5	140215477	140215477	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018910.2	+1	reviewed	p.A503	0.885	43	0%	73	45.2%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140230194	140230194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031857.1	+1	reviewed	p.C705Y	0.998	51	0%	62	38.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PCDHB7	56129	genome.wustl.edu	37	5	140554340	140554340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018940.2	+1	reviewed	p.V642M	0.402	37	0%	58	31%	2	0%	possibly_damaging(0.932)	tolerated(0.05)	deleterious(0.724)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
TAF7	6879	genome.wustl.edu	37	5	140698982	140698982	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005642.2	-1	reviewed	p.G210	1.000	206	0%	233	36.1%	157	48.4%	-	-	-	NULL
DIAPH1	1729	genome.wustl.edu	37	5	140908375	140908375	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005219.4	-1	reviewed	p.E971V	1.000	312	0%	596	41.8%	76	51.3%	unknown(0)	deleterious(0.03)	-	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
AFAP1L1	134265	genome.wustl.edu	37	5	148689625	148689625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152406.2	+1	validated	p.R285H	1.000	41	0%	79	43%	1	0%	benign(0.035)	deleterious(0)	neutral(0.447)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PDGFRB	5159	genome.wustl.edu	37	5	149510217	149510217	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002609.3	-1	reviewed	p.R418*	0.161	75	0%	104	46.2%	7	0%	-	-	-	NULL
TCOF1	6949	genome.wustl.edu	37	5	149754973	149754973	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135243.1	+1	reviewed	p.G520	0.006	70	0%	111	45.9%	23	47.8%	-	-	-	HMMPfam_Treacle
C5orf54	63920	genome.wustl.edu	37	5	159821611	159821611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022090.3	-1	validated	p.R296M	1.000	282	0%	327	43.7%	5	20%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
STK10	6793	genome.wustl.edu	37	5	171479987	171479987	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005990.3	-1	reviewed	p.E904	1.000	36	0%	76	26.3%	4	100%	-	-	-	NULL
STK10	6793	genome.wustl.edu	37	5	171523524	171523524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005990.3	-1	reviewed	p.R304L	1.000	166	0%	231	48.1%	5	0%	possibly_damaging(0.743)	tolerated(0.08)	deleterious(0.573)	superfamily_Kinase_like
CDHR2	54825	genome.wustl.edu	37	5	176008463	176008463	+	Silent	SNP	G	G	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017675.4	+1	reviewed	p.G646	1.000	26	0%	64	50%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
ENSG00000221243	0	genome.wustl.edu	37	6	3177623	3177623	+	RNA	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408316	+1	novel	NULL	1.000	81	0%	92	39.1%	5	0%	-	-	-	-
CDYL	9425	genome.wustl.edu	37	6	4954427	4954427	+	RNA	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026590.1	+1	reviewed	NULL	0.313	14	0%	29	65.5%	37	37.8%	-	-	-	-
CAP2	10486	genome.wustl.edu	37	6	17421853	17421853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006366.2	+1	reviewed	p.A23T	0.986	185	0%	288	39.6%	6	33.3%	benign(0.001)	tolerated(0.41)	neutral(0.015)	HMMPfam_CAP_N
NUP153	9972	genome.wustl.edu	37	6	17628942	17628942	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005124.2	-1	reviewed	p.S1163Y	0.745	86	0%	94	20.2%	44	31.8%	possibly_damaging(0.654)	deleterious(0.02)	deleterious(0.613)	NULL
HIST1H3A	8350	genome.wustl.edu	37	6	26020964	26020964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003529.2	+1	reviewed	p.L83M	1.000	47	0%	76	38.2%	1	0%	probably_damaging(0.994)	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
HIST1H2BD	3017	genome.wustl.edu	37	6	26158417	26158417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021063.2	+1	reviewed	p.S7Y	0.973	137	0%	176	45.5%	92	46.7%	benign(0.336)	deleterious(0)	deleterious(0.550)	superfamily_Histone-fold
BTN2A2	10385	genome.wustl.edu	37	6	26388359	26388359	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006995.3	+1	reviewed	p.G187	0.000	176	0%	253	38.7%	1	100%	-	-	-	HMMPfam_C2-set_2,superfamily_Immunoglobulin
GABBR1	2550	genome.wustl.edu	37	6	29572279	29572279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001470.2	-1	reviewed	p.I902V	1.000	462	0.2%	949	14.2%	0	-	probably_damaging(0.97)	deleterious(0.01)	deleterious(0.818)	NULL
GTF2H4	2968	genome.wustl.edu	37	6	30879922	30879922	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001517.4	+1	validated	p.T319	0.000	60	0%	65	23.1%	56	30.3%	-	-	-	HMMPfam_Tfb2
NOTCH4	4855	genome.wustl.edu	37	6	32170167	32170167	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004557.3	-1	reviewed	p.S1147	0.079	31	0%	36	41.7%	2	0%	-	-	-	HMMSmart_SM00181,superfamily_EGF/Laminin
NOTCH4	4855	genome.wustl.edu	37	6	32191659	32191661	+	In_Frame_Del	DEL	AGC	AGC	-	rs72110219		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	AGC	AGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004557.3	-1	reviewed	p.L16in_frame_del	0.003:0.005:0.005	-	-	-	-	-	-	-	-	-	NULL
FANCE	2178	genome.wustl.edu	37	6	35423599	35423599	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021922.2	+1	reviewed	p.S108	0.000	50	0%	69	53.6%	3	66.6%	-	-	-	NULL
MDGA1	266727	genome.wustl.edu	37	6	37622165	37622165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153487.3	-1	validated	p.Q289H	0.993	55	0%	87	51.7%	0	-	probably_damaging(0.964)	tolerated(0.23)	neutral(0.448)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
MOCS1	4337	genome.wustl.edu	37	6	39880039	39880039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001075098.3	-1	reviewed	p.R317H	1.000	65	0%	139	21.6%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Mob_synth_C,superfamily_SSF102114
PGC	5225	genome.wustl.edu	37	6	41710063	41710063	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002630.3	-1	reviewed	p.A204	0.006	37	0%	70	32.9%	0	-	-	-	-	HMMPfam_Asp,superfamily_Pept_Aspartic
CNPY3	10695	genome.wustl.edu	37	6	42902285	42902285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006586.3	+1	validated	p.T75M	0.965	79	0%	133	47.4%	122	45%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
PPP2R5D	5528	genome.wustl.edu	37	6	42976484	42976484	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006245.2	+1	reviewed	p.P360	1.000	24	0%	53	52.8%	57	0%	-	-	-	HMMPfam_B56
KLC4	89953	genome.wustl.edu	37	6	43038099	43038099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201523.1	+1	validated	p.A314V	1.000	45	0%	61	32.8%	24	54.1%	benign(0.431)	tolerated(0.06)	neutral(0.463)	HMMPfam_TPR_1,PatternScan_KINESIN_LIGHT,HMMSmart_SM00028,superfamily_TPR-like
CUL9	23113	genome.wustl.edu	37	6	43166418	43166418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015089.2	+1	validated	p.P959T	1.000	229	0%	370	43.5%	2	50%	benign(0.205)	tolerated(0.12)	neutral(0.281)	superfamily_ARM repeat
VEGFA	7422	genome.wustl.edu	37	6	43748592	43748592	+	Splice_Site	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025366.2	+1	reviewed	e6+1	0.000	45	0%	66	30.3%	3	66.6%	-	-	-	-
HSP90AB1	3326	genome.wustl.edu	37	6	44219919	44219921	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007355.2	+1	provisional	p.K552in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_HSP90
DPPA5	340168	genome.wustl.edu	37	6	74063740	74063740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025290.1	-1	provisional	p.R43Q	0.508	73	0%	64	40.6%	0	-	benign(0.122)	tolerated(0.11)	neutral(0.282)	superfamily_SSF54791
EEF1A1	1915	genome.wustl.edu	37	6	74228893	74228894	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001402.5	-1	reviewed	p.S128fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIAA1009	22832	genome.wustl.edu	37	6	84865162	84865162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014895.2	-1	validated	p.A950V	1.000	223	0%	250	40.8%	6	66.6%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
TBX18	9096	genome.wustl.edu	37	6	85457773	85457773	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080508.1	-1	provisional	p.P268	0.000	85	0%	85	17.6%	24	62.5%	-	-	-	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
MDN1	23195	genome.wustl.edu	37	6	90486413	90486413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014611.1	-1	provisional	p.A576V	1.000	57	0%	63	44.4%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
USP45	85015	genome.wustl.edu	37	6	99936568	99936568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080481.1	-1	provisional	p.A203T	1.000	133	0%	108	44.4%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UCH,PatternScan_UCH_2_1,superfamily_Cysteine proteinases
ASCC3	10973	genome.wustl.edu	37	6	101049705	101049705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006828.2	-1	validated	p.R1762C	0.986	168	0%	193	40.9%	26	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRDM1	639	genome.wustl.edu	37	6	106553486	106553486	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001198.3	+1	reviewed	p.P484H	0.504	65	0%	93	41.9%	7	28.5%	benign(0.003)	deleterious(0)	neutral(0.445)	NULL
SCML4	256380	genome.wustl.edu	37	6	108067947	108067947	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198081.3	-1	validated	p.Q145*	1.000	57	0%	135	50.4%	0	-	-	-	-	NULL
MOXD1	26002	genome.wustl.edu	37	6	132649650	132649650	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015529.2	-1	validated	p.S249	0.214	95	0%	131	41.2%	36	30.5%	-	-	-	HMMPfam_Cu2_monooxygen,superfamily_PHM/PNGase F
BCLAF1	9774	genome.wustl.edu	37	6	136599727	136599727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014739.2	-1	reviewed	p.N98D	1.000	276	0%	366	11.7%	36	0%	unknown(0)	deleterious(0.02)	-	NULL
ADAT2	134637	genome.wustl.edu	37	6	143753713	143753713	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182503.2	-1	validated	p.R130*	1.000	147	0%	194	43.3%	5	60%	-	-	-	superfamily_Cytidine deaminase-like
AKAP12	9590	genome.wustl.edu	37	6	151673459	151673459	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005100.3	+1	reviewed	p.E1311D	0.000	291	0%	449	43.2%	65	53.8%	benign(0.001)	tolerated(0.47)	neutral(0.011)	NULL
AKAP12	9590	genome.wustl.edu	37	6	151673606	151673606	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005100.3	+1	reviewed	p.H1360	0.000	275	0%	456	42.1%	74	31%	-	-	-	NULL
TIAM2	26230	genome.wustl.edu	37	6	155450763	155450763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012454.3	+1	reviewed	p.H136Y	0.988	64	0%	119	38.7%	3	66.6%	benign(0.01)	tolerated(0.31)	neutral(0.028)	NULL
TMEM181	57583	genome.wustl.edu	37	6	158994489	158994489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020823.1	+1	validated	p.H153Y	1.000	11	0%	21	28.6%	5	40%	probably_damaging(0.969)	tolerated(0.19)	neutral(0.461)	NULL
FNDC1	84624	genome.wustl.edu	37	6	159653527	159653527	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000329629	+1	known	p.R557C	0.000	40	0%	28	39.3%	0	-	-	-	-	NULL
IGF2R	3482	genome.wustl.edu	37	6	160490922	160490922	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000876.2	+1	reviewed	p.A1425	0.062	38	0%	57	42.1%	33	39.3%	-	-	-	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
SLC22A1	6580	genome.wustl.edu	37	6	160557671	160557671	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003057.2	+1	reviewed	p.L350	1.000	128	0%	280	47.9%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
KIF25	3834	genome.wustl.edu	37	6	168439259	168439259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030615.2	+1	reviewed	p.S115N	0.000	55	0%	75	46.7%	0	-	benign(0.003)	tolerated(0.06)	neutral(0.323)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM120B	84498	genome.wustl.edu	37	6	170626612	170626612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032448.1	+1	provisional	p.A45V	1.000	128	0%	194	47.4%	21	38%	probably_damaging(0.992)	deleterious(0.05)	deleterious(0.793)	superfamily_PIN domain-like
INTS1	26173	genome.wustl.edu	37	7	1542632	1542632	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080453.2	-1	validated	p.P85H	0.998	24	0%	35	48.6%	12	25%	possibly_damaging(0.46)	deleterious(0)	deleterious(0.596)	NULL
USP42	84132	genome.wustl.edu	37	7	6175579	6175579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032172.2	+1	validated	p.R184W	1.000	37	0%	62	33.9%	8	50%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	HMMPfam_UCH,superfamily_SSF54001
KDELR2	11014	genome.wustl.edu	37	7	6505874	6505874	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006854.3	-1	reviewed	p.A144	0.016	134	0%	212	54.2%	639	45.2%	-	-	-	HMMPfam_ER_lumen_recept
C7orf26	79034	genome.wustl.edu	37	7	6634071	6634071	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024067.2	+1	predicted	p.T140	0.985	90	0%	130	45.4%	38	65.7%	-	-	-	NULL
HNRNPA2B1	3181	genome.wustl.edu	37	7	26232995	26232995	+	Splice_Site	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031243.2	-1	reviewed	e10-2	1.000	126	0%	143	49.7%	4	100%	-	-	-	-
PRR15	222171	genome.wustl.edu	37	7	29606316	29606316	+	Missense_Mutation	SNP	C	C	A	rs112093295	byCluster;by1000genomes	TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175887.2	+1	provisional	p.P124H	0.418	7	0.000	7	0.714	78	44.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
NOD1	10392	genome.wustl.edu	37	7	30491341	30491341	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006092.2	-1	reviewed	p.P564	0.000	51	0%	57	43.9%	6	16.6%	-	-	-	NULL
BBS9	27241	genome.wustl.edu	37	7	33312747	33312747	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198428.2	+1	reviewed	p.Q276E	1.000	209	0%	288	39.6%	6	66.6%	benign(0.009)	tolerated(0.78)	neutral(0.002)	NULL
ANLN	54443	genome.wustl.edu	37	7	36447395	36447395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018685.2	+1	validated	p.C309Y	0.847	192	0%	191	42.9%	25	48%	benign(0)	tolerated(1)	-	NULL
CDK13	8621	genome.wustl.edu	37	7	40134246	40134246	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003718.4	+1	reviewed	p.S1402	1.000	215	0.5%	262	40.8%	46	30.4%	-	-	-	NULL
NPC1L1	29881	genome.wustl.edu	37	7	44556325	44556325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013389.2	-1	reviewed	p.V1193M	0.999	28	0%	45	37.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Patched,superfamily_SSF82866
TBRG4	9238	genome.wustl.edu	37	7	45143024	45143024	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004749.2	-1	validated	p.Q362*	0.000	11	0%	11	36.4%	111	0%	-	-	-	NULL
ZNF679	168417	genome.wustl.edu	37	7	63720634	63720634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153363.2	+1	validated	p.F25L	0.499	279	0.4%	399	38.1%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
PION	54103	genome.wustl.edu	37	7	76943692	76943692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017439.3	-1	validated	p.M735T	1.000	152	0%	223	36.8%	4	25%	benign(0.137)	deleterious(0)	neutral(0.456)	NULL
PTPN12	5782	genome.wustl.edu	37	7	77256691	77256692	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002835.3	+1	reviewed	p.V566fs	1.000:0.982	-	-	-	-	-	-	-	-	-	NULL
ARPC1B	10095	genome.wustl.edu	37	7	98988864	98988864	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005720.2	+1	reviewed	p.S257	0.999	22	0%	19	68.4%	209	31.5%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
PTCD1	26024	genome.wustl.edu	37	7	99022429	99022429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015545.2	-1	validated	p.T576A	0.001	47	0%	39	46.2%	32	53.1%	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
SRRT	51593	genome.wustl.edu	37	7	100484721	100484721	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015908.5	+1	validated	p.Y625	0.997	225	0%	216	35.6%	187	43.3%	-	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100675644	100675644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.P316L	0.000	581	0%	786	41.7%	0	-	unknown(0)	-	-	NULL
RELN	5649	genome.wustl.edu	37	7	103151406	103151406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.F2722L	1.000	159	0%	181	43.6%	0	-	possibly_damaging(0.943)	deleterious(0.02)	deleterious(0.770)	superfamily_Sialidase
LAMB4	22798	genome.wustl.edu	37	7	107688460	107688460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007356.2	-1	validated	p.G1407C	0.000	113	0%	157	40.8%	0	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
FLNC	2318	genome.wustl.edu	37	7	128484863	128484863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001458.4	+1	reviewed	p.G1115D	1.000	46	0%	62	45.2%	0	-	probably_damaging(0.996)	tolerated(0.15)	deleterious(0.703)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
MKLN1	4289	genome.wustl.edu	37	7	131147997	131147998	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013255.4	+1	validated	p.R517fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Galactose oxidase central domain
FAM131B	9715	genome.wustl.edu	37	7	143056691	143056691	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000452076	-1	known	p.C18	0.001	6	0.000	10	0.400	0	-	-	-	-	NULL
ZNF862	643641	genome.wustl.edu	37	7	149558747	149558747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099220.1	+1	provisional	p.R833H	0.980	17	0%	19	52.6%	0	-	benign(0.045)	deleterious(0.01)	neutral(0.408)	NULL
ASIC3	9311	genome.wustl.edu	37	7	150748903	150748903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377904	+1	known	p.T358M	0.700	24	0%	37	43.2%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
SLC4A2	6522	genome.wustl.edu	37	7	150768659	150768659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003040.3	+1	validated	p.L720M	1.000	20	0%	27	48.1%	16	31.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HCO3_cotransp
INSIG1	3638	genome.wustl.edu	37	7	155100008	155100008	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000476756	+1	known	p.K220E	0.000	75	0%	123	39.8%	70	51.4%	-	-	-	NULL
RNF32	140545	genome.wustl.edu	37	7	156437386	156437386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030936.2	+1	reviewed	p.C70Y	0.000	197	0%	138	35.5%	9	55.5%	benign(0.004)	tolerated(0.05)	neutral(0.345)	NULL
DLGAP2	9228	genome.wustl.edu	37	8	1497273	1497273	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004745.3	+1	reviewed	p.A138	0.012	12	0%	18	27.8%	0	-	-	-	-	NULL
AGPAT5	55326	genome.wustl.edu	37	8	6588236	6588236	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018361.3	+1	reviewed	p.D98	1.000	68	0%	74	23%	20	25%	unknown(0)	-	-	HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593
CLDN23	137075	genome.wustl.edu	37	8	8560181	8560181	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194284.2	+1	validated	p.T91	0.002	17	0%	11	54.5%	10	30%	-	-	-	HMMPfam_PMP22_Claudin
SOX7	83595	genome.wustl.edu	37	8	10583716	10583716	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031439.2	-1	reviewed	p.R233	0.442	36	0%	53	34%	7	57.1%	-	-	-	NULL
NAT1	9	genome.wustl.edu	37	8	18079747	18079747	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000662.5	+1	reviewed	p.R64Q	0.388	465	0%	631	46.6%	19	47.3%	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	HMMPfam_Acetyltransf_2,superfamily_SSF54001
HR	55806	genome.wustl.edu	37	8	21976741	21976741	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005144.4	-1	reviewed	p.A1011	0.663	18	0%	13	38.5%	3	66.6%	-	-	-	HMMSmart_SM00558
RHOBTB2	23221	genome.wustl.edu	37	8	22861962	22861962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015178.2	+1	validated	p.M5I	1.000	57	0%	58	37.9%	2	50%	possibly_damaging(0.608)	deleterious(0.01)	deleterious(0.616)	NULL
NEFM	4741	genome.wustl.edu	37	8	24771433	24771433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005382.2	+1	reviewed	p.G43S	0.823	9	0.000	6	0.833	0	-	benign(0.003)	tolerated(0.83)	neutral(0.001)	HMMPfam_Filament_head
EPHX2	2053	genome.wustl.edu	37	8	27364450	27364450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001979.4	+1	reviewed	p.T200I	1.000	90	0%	156	44.2%	16	56.2%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Hydrolase,superfamily_SSF56784
SCARA3	51435	genome.wustl.edu	37	8	27516260	27516260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016240.2	+1	reviewed	p.Q191H	1.000	105	0%	131	45.8%	3	33.3%	probably_damaging(0.979)	tolerated(0.23)	neutral(0.463)	NULL
TEX15	56154	genome.wustl.edu	37	8	30695220	30695220	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031271.3	-1	validated	p.L2477	0.000	293	0%	377	20.4%	0	-	-	-	-	NULL
PXDNL	137902	genome.wustl.edu	37	8	52320920	52320920	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144651.4	-1	validated	p.P1088	0.205	59	0%	45	33.3%	0	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
CLVS1	157807	genome.wustl.edu	37	8	62412051	62412053	+	In_Frame_Del	DEL	GAG	GAG	-	rs35623706	byCluster	TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173519.2	+1	validated	p.E340in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
RIMS2	9699	genome.wustl.edu	37	8	105001618	105001618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100117.1	+1	validated	p.M1005V	0.980	177	0.6%	242	44.2%	1	0%	benign(0)	tolerated(0.7)	neutral(0.002)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110439284	110439284	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177531.4	+1	validated	p.E967*	0.000	67	0%	89	55.1%	0	-	-	-	-	NULL
EXT1	2131	genome.wustl.edu	37	8	119123140	119123140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000127.2	-1	reviewed	p.P49H	1.000	71	0%	62	40.3%	13	61.5%	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	NULL
KIAA0196	9897	genome.wustl.edu	37	8	126052058	126052058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014846.3	-1	reviewed	p.A978V	1.000	115	0%	137	43.1%	27	48.1%	benign(0.086)	tolerated(0.33)	neutral(0.030)	HMMPfam_Strumpellin
GPR20	2843	genome.wustl.edu	37	8	142367700	142367700	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005293.2	-1	validated	p.T108	0.887	18	0%	24	41.7%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TSNARE1	203062	genome.wustl.edu	37	8	143436005	143436005	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145003.3	-1	validated	p.Q27H	1.000	15	0%	16	62.5%	1	0%	possibly_damaging(0.861)	deleterious(0)	deleterious(0.778)	NULL
NOL6	65083	genome.wustl.edu	37	9	33467814	33467814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022917.4	-1	reviewed	p.P493S	1.000	58	0%	66	47%	15	33.3%	benign(0.002)	tolerated(0.74)	neutral(0.002)	HMMPfam_Nrap
UBAP1	51271	genome.wustl.edu	37	9	34241378	34241378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016525.4	+1	reviewed	p.P119T	1.000	219	0%	387	38.2%	83	45.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
IL11RA	3590	genome.wustl.edu	37	9	34658519	34658519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142784.1	+1	reviewed	p.R217C	1.000	65	0%	100	51%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_HEMATOPO_REC_L_F3,superfamily_Fibronectin type III
PRKACG	5568	genome.wustl.edu	37	9	71628560	71628560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002732.3	-1	reviewed	p.Q150R	1.000	63	0%	88	47.7%	0	-	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TLE1	7088	genome.wustl.edu	37	9	84202636	84202656	+	In_Frame_Del	DEL	CGCAGGTCCCAGGACCTGACT	CGCAGGTCCCAGGACCTGACT	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	CGCAGGTCCCAGGACCTGACT	CGCAGGTCCCAGGACCTGACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005077.3	-1	provisional	p.VRSWDLR640in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.982:1.000:0.985:0.987:1.000:1.000:0.853	-	-	-	-	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
FAM75C1	441452	genome.wustl.edu	37	9	90537668	90537668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145124.1	+1	validated	p.C949Y	0.000	245	0.4%	381	37.5%	0	-	-	-	-	NULL
LOC645937	645937	genome.wustl.edu	37	9	90559391	90559391	+	Missense_Mutation	SNP	C	C	T	rs183045576	by1000genomes	TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_928905.4	-1	model	p.R119H	0.177	26	0%	44	50%	0	-	-	-	-	NULL
KLF4	9314	genome.wustl.edu	37	9	110248112	110248112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004235.4	-1	validated	p.R454C	1.000	82	0%	106	35.8%	21	80.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
PTGR1	22949	genome.wustl.edu	37	9	114348376	114348376	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012212.3	-1	reviewed	p.T93	0.000	224	0%	343	42.6%	157	43.9%	-	-	-	superfamily_GroES_like
PRPF4	9128	genome.wustl.edu	37	9	116050499	116050499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004697.3	+1	provisional	p.A327V	1.000	61	0%	76	39.5%	69	46.3%	benign(0.36)	tolerated(0.12)	neutral(0.375)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_PEROXIDASE_2
POLE3	54107	genome.wustl.edu	37	9	116171121	116171123	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017443.4	-1	validated	p.E138in_frame_del	0.653:0.975:0.980	-	-	-	-	-	-	-	-	-	superfamily_Histone-fold
TLR4	7099	genome.wustl.edu	37	9	120475890	120475890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138554.3	+1	reviewed	p.L495P	0.434	173	0%	157	42.7%	2	50%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
LHX2	9355	genome.wustl.edu	37	9	126783391	126783391	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000446480	+1	known	p.R253*	0.929	28	0%	40	40%	0	-	-	-	-	NULL
TTC16	158248	genome.wustl.edu	37	9	130482562	130482562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144965.1	+1	provisional	p.A182V	1.000	24	0%	27	25.9%	0	-	unknown(0)	deleterious(0.01)	-	superfamily_SSF48452
CDK9	1025	genome.wustl.edu	37	9	130551610	130551610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001261.3	+1	validated	p.R303C	1.000	39	0%	56	33.9%	142	44.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ODF2	4957	genome.wustl.edu	37	9	131256844	131256844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002540.3	+1	reviewed	p.L579P	1.000	75	0%	108	37%	152	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NUP188	23511	genome.wustl.edu	37	9	131721337	131721337	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015354.1	+1	validated	p.V170D	0.996	178	0.6%	242	41.7%	11	54.5%	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	HMMPfam_Nup188
FUBP3	8939	genome.wustl.edu	37	9	133498156	133498156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003934.1	+1	validated	p.K278R	1.000	147	0%	159	43.4%	55	43.6%	possibly_damaging(0.79)	tolerated(0.29)	neutral(0.326)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
ABL1	25	genome.wustl.edu	37	9	133759442	133759442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007313.2	+1	reviewed	p.R608C	1.000	108	0%	147	41.5%	37	56.7%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
ABL1	25	genome.wustl.edu	37	9	133759906	133759906	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007313.2	+1	reviewed	p.T762	0.001	26	0%	34	55.9%	39	46.1%	-	-	-	NULL
PRRC2B	84726	genome.wustl.edu	37	9	134334666	134334666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013318.3	+1	validated	p.R443C	0.993	54	0%	105	41%	23	30.4%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
VAV2	7410	genome.wustl.edu	37	9	136650998	136650998	+	Missense_Mutation	SNP	C	C	T	rs186434110	by1000genomes	TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134398.1	-1	reviewed	p.G478S	1.000	18	0.000	9	1.000	20	45%	probably_damaging(1)	tolerated(0.66)	deleterious(0.502)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PPP1R26	9858	genome.wustl.edu	37	9	138376524	138376524	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014811.3	+1	validated	p.R56	0.000	9	0.000	15	0.333	14	64.2%	-	-	-	NULL
SNAPC4	6621	genome.wustl.edu	37	9	139277636	139277637	+	Splice_Site	INS	-	-	CCT	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003086.2	-1	validated	e15+1	0.664:0.753	-	-	-	-	-	-	-	-	-	-
PRKCQ	5588	genome.wustl.edu	37	10	6525556	6525556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006257.2	-1	reviewed	p.Q342R	1.000	223	0%	206	31.6%	1	0%	benign(0.104)	tolerated(0.59)	neutral(0.013)	NULL
FRMD4A	55691	genome.wustl.edu	37	10	13701373	13701373	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018027.3	-1	validated	p.P672	0.859	25	0%	14	64.3%	5	60%	-	-	-	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24922402	24922402	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020824.3	-1	validated	p.R123	1.000	82	0%	68	41.2%	5	40%	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
MYO3A	53904	genome.wustl.edu	37	10	26409675	26409675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017433.4	+1	reviewed	p.A616V	1.000	122	0%	134	44.8%	0	-	benign(0.01)	tolerated(0.23)	neutral(0.042)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
C10orf68	79741	genome.wustl.edu	37	10	33000652	33000652	+	Missense_Mutation	SNP	C	C	T	rs34466233		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024688.2	+1	validated	p.R162C	0.000	84	0%	69	17.4%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
ERCC6	2074	genome.wustl.edu	37	10	50738878	50738878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000124.2	-1	reviewed	p.T144M	0.946	109	0%	148	26.4%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SEC24C	9632	genome.wustl.edu	37	10	75523681	75523681	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004922.2	+1	reviewed	p.K389	1.000	24	0%	59	44.1%	37	51.3%	-	-	-	superfamily_beta-sandwich domain of Sec23/24
KCNMA1	3778	genome.wustl.edu	37	10	78708934	78708934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014797.2	-1	reviewed	p.T838M	1.000	461	0%	738	45.1%	1	100%	possibly_damaging(0.908)	tolerated(0.13)	deleterious(0.614)	NULL
POLR3A	11128	genome.wustl.edu	37	10	79785936	79785936	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007055.3	-1	validated	p.A32	0.000	94	0%	197	44.2%	4	25%	-	-	-	HMMPfam_RNA_pol_Rpb1_1,superfamily_SSF64484
C10orf57	80195	genome.wustl.edu	37	10	81850575	81850575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025125.2	+1	provisional	p.R92W	0.004	217	0.5%	252	40.1%	24	41.6%	benign(0.001)	tolerated(0.19)	neutral(0.050)	NULL
GRID1	2894	genome.wustl.edu	37	10	87379738	87379738	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000327946	-1	known	p.Q532*	1.000	60	0%	95	44.2%	0	-	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II
WAPAL	23063	genome.wustl.edu	37	10	88260090	88260091	+	In_Frame_Ins	INS	-	-	TTTCGT	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015045.2	-1	validated	p.303in_frame_insTK	0.978:0.997	-	-	-	-	-	-	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89717609	89717609	+	Splice_Site	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	e7-1	1.000	271	0%	378	88.6%	1	100%	-	-	-	-
PCGF5	84333	genome.wustl.edu	37	10	92982636	92982636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032373.3	+1	provisional	p.T3I	1.000	76	0%	95	34.7%	43	51.1%	benign(0.109)	deleterious(0.03)	neutral(0.373)	NULL
PDE6C	5146	genome.wustl.edu	37	10	95372507	95372507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006204.3	+1	reviewed	p.V9M	0.997	125	0%	192	41.7%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
EXOSC1	51013	genome.wustl.edu	37	10	99196961	99196961	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016046.3	-1	validated	p.A156	0.999	125	0%	184	43.5%	128	49.2%	-	-	-	NULL
GOT1	2805	genome.wustl.edu	37	10	101157330	101157330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002079.2	-1	reviewed	p.H406N	1.000	305	0%	311	37.3%	221	47.5%	benign(0.001)	tolerated(0.11)	neutral(0.272)	superfamily_PLP-dependent transferases
PDZD7	79955	genome.wustl.edu	37	10	102789872	102789872	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024895.3	-1	provisional	p.S35	0.074	15	0%	24	41.7%	0	-	-	-	-	NULL
NFKB2	4791	genome.wustl.edu	37	10	104160707	104160707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077494.1	+1	validated	p.R658W	0.992	33	0%	39	35.9%	67	40.2%	possibly_damaging(0.709)	deleterious(0.01)	deleterious(0.661)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ITPRIP	85450	genome.wustl.edu	37	10	106074610	106074610	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033397.2	-1	provisional	p.P400	0.759	68	0%	97	45.4%	5	20%	-	-	-	NULL
PNLIPRP3	119548	genome.wustl.edu	37	10	118228790	118228790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011709.2	+1	validated	p.H341N	0.006	107	0%	65	44.6%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
EMX2	2018	genome.wustl.edu	37	10	119307691	119307691	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004098.3	+1	reviewed	p.I236N	1.000	56	0%	86	44.2%	194	51%	possibly_damaging(0.882)	deleterious(0.03)	deleterious(0.709)	NULL
TIAL1	7073	genome.wustl.edu	37	10	121342114	121342114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033925.1	-1	reviewed	p.D46N	1.000	168	0%	195	37.9%	3	66.6%	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
CPXM2	119587	genome.wustl.edu	37	10	125557552	125557552	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198148.2	-1	validated	p.S277A	0.972	84	0%	146	50.7%	0	-	possibly_damaging(0.728)	deleterious(0.03)	deleterious(0.629)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_2,superfamily_Galactose-binding domain-like
DOCK1	1793	genome.wustl.edu	37	10	129172329	129172329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398025	+1	known	p.E1221K	1.000	33	0%	54	31.5%	10	50%	possibly_damaging(0.815)	deleterious(0.01)	deleterious(0.713)	NULL
MKI67	4288	genome.wustl.edu	37	10	129905111	129905112	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.E1664fs	0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_K167R
DNHD1	144132	genome.wustl.edu	37	11	6592336	6592336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144666.2	+1	provisional	p.R4532C	0.966	12	0%	36	38.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Dynein_heavy
OLFML1	283298	genome.wustl.edu	37	11	7530982	7530982	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198474.3	+1	validated	p.R258*	0.966	139	0%	214	50.5%	1	0%	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
GALNTL4	374378	genome.wustl.edu	37	11	11400652	11400652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198516.2	-1	validated	p.A252V	1.000	43	0%	47	46.8%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
MICAL2	9645	genome.wustl.edu	37	11	12225914	12225914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014632.2	+1	provisional	p.H128Y	1.000	127	0%	172	43.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FAD/NAD(P)-binding domain
PIK3C2A	5286	genome.wustl.edu	37	11	17156375	17156375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002645.2	-1	validated	p.W700L	1.000	128	0%	137	44.5%	4	75%	possibly_damaging(0.655)	deleterious(0.01)	deleterious(0.636)	HMMSmart_SM00239,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
KCNC1	3746	genome.wustl.edu	37	11	17793591	17793591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112741.1	+1	reviewed	p.R317H	1.000	69	0%	82	43.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
OR8H1	219469	genome.wustl.edu	37	11	56057978	56057978	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005199.1	-1	provisional	p.S187	0.001	193	0%	220	37.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LOC643637	643637	genome.wustl.edu	37	11	58818195	58818195	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343101.1	+1	model	p.S250	0.034	44	2.3%	51	49%	0	-	-	-	-	HMMPfam_Gly_acyl_tr_C,superfamily_Acyl-CoA N-acyltransferases (Nat)
ROM1	6094	genome.wustl.edu	37	11	62381191	62381191	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000327.3	+1	reviewed	p.D146	1.000	38	0%	44	52.3%	1	0%	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
FKBP2	2286	genome.wustl.edu	37	11	64011460	64011460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135208.1	+1	reviewed	p.E130K	1.000	78	0%	85	47.1%	156	47.4%	benign(0.141)	deleterious(0.03)	neutral(0.377)	HMMPfam_FKBP_C,superfamily_FKBP-like
LOC100131416	100131416	genome.wustl.edu	37	11	64878764	64878764	+	Missense_Mutation	SNP	G	G	A	rs142955363	by1000genomes	TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716064.2	-1	model	p.T135I	0.000	13	0%	13	53.8%	7	42.8%	-	-	-	NULL
PELI3	246330	genome.wustl.edu	37	11	66240719	66240719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145065.2	+1	validated	p.R155H	1.000	29	0%	36	36.1%	12	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pellino
NUMA1	4926	genome.wustl.edu	37	11	71717144	71717144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006185.2	-1	validated	p.R1877C	1.000	43	0%	77	46.8%	281	50.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
P2RY2	5029	genome.wustl.edu	37	11	72945673	72945673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002564.2	+1	reviewed	p.V157M	0.994	45	0%	54	44.4%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LOC653111	653111	genome.wustl.edu	37	11	89774481	89774481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_926073.2	+1	model	p.K374N	0.003	392	0%	463	41%	0	-	benign(0.001)	tolerated(0.52)	neutral(0.009)	HMMPfam_SPRY,HMMSmart_SM00449
ENSG00000204449	0	genome.wustl.edu	37	11	89806327	89806327	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000432771	+1	known	p.D370	0.000	283	0%	351	26.2%	0	-	-	-	-	HMMPfam_SPRY
MTNR1B	4544	genome.wustl.edu	37	11	92715413	92715413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005959.3	+1	reviewed	p.A342T	0.000	146	0%	241	44.4%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	superfamily_SSF81321
PGR	5241	genome.wustl.edu	37	11	100933289	100933289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000926.4	-1	reviewed	p.A701T	1.000	380	0.3%	473	43.8%	70	55.7%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	superfamily_Nuclear receptor ligand-binding domain
MMP10	4319	genome.wustl.edu	37	11	102645963	102645963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002425.2	-1	reviewed	p.A341V	1.000	107	0%	85	50.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Hemopexin-like domain,PatternScan_HEMOPEXIN,HMMPfam_Hemopexin,HMMSmart_SM00120
DYNC2H1	79659	genome.wustl.edu	37	11	102984277	102984277	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080463.1	+1	reviewed	p.G69	1.000	121	0%	97	36.1%	0	-	-	-	-	NULL
PDGFD	80310	genome.wustl.edu	37	11	103814332	103814332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025208.4	-1	reviewed	p.A207V	1.000	71	0%	82	35.4%	0	-	possibly_damaging(0.676)	tolerated(0.12)	deleterious(0.501)	NULL
ATM	472	genome.wustl.edu	37	11	108186548	108186548	+	Splice_Site	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000051.3	+1	reviewed	e40-2	0.998	54	0%	77	51.9%	0	-	-	-	-	-
ARHGAP20	57569	genome.wustl.edu	37	11	110462742	110462742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020809.2	-1	validated	p.P368S	0.003	299	0%	369	39%	0	-	benign(0.001)	tolerated(0.4)	neutral(0.016)	superfamily_GTPase activation domain GAP
RNF214	257160	genome.wustl.edu	37	11	117152875	117152875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077239.1	+1	validated	p.P534L	1.000	289	0.3%	438	47.3%	9	44.4%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
PDZD3	79849	genome.wustl.edu	37	11	119057385	119057385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024791.3	+1	validated	p.E106K	0.973	27	0%	53	41.5%	0	-	benign(0.104)	tolerated(0.48)	neutral(0.019)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
TECTA	7007	genome.wustl.edu	37	11	121060496	121060496	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005422.2	+1	reviewed	p.G2092*	0.997	137	0%	205	44.4%	0	-	-	-	-	HMMSmart_SM00181,superfamily_EGF/Laminin
OR10G9	219870	genome.wustl.edu	37	11	123893757	123893757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001953.1	+1	provisional	p.T13M	0.765	377	0%	465	37.8%	0	-	benign(0.001)	tolerated(0.1)	neutral(0.286)	superfamily_SSF81321
ROBO4	54538	genome.wustl.edu	37	11	124755024	124755024	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019055.5	-1	validated	p.L972	0.284	74	0%	83	51.8%	4	0%	-	-	-	NULL
IGSF9B	22997	genome.wustl.edu	37	11	133795755	133795755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014987.1	-1	validated	p.A638V	1.000	24	0%	11	45.5%	0	-	benign(0.001)	tolerated(0.72)	neutral(0.002)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
LRTM2	654429	genome.wustl.edu	37	12	1943759	1943759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039029.2	+1	validated	p.A329T	0.999	13	0%	26	50%	2	100%	unknown(0)	-	-	NULL
CACNA1C	775	genome.wustl.edu	37	12	2764319	2764319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199460.2	+1	reviewed	p.G1431W	1.000	34	0%	37	37.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
AKAP3	10566	genome.wustl.edu	37	12	4736296	4736296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006422.2	-1	reviewed	p.R591M	0.995	208	0%	287	38.7%	0	-	benign(0)	tolerated(0.17)	neutral(0.059)	HMMPfam_AKAP_110,HMMSmart_SM00807
GNB3	2784	genome.wustl.edu	37	12	6952968	6952968	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002075.2	+1	reviewed	p.Q175	1.000	105	0%	147	55.1%	0	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
CD163L1	283316	genome.wustl.edu	37	12	7586229	7586229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174941.4	-1	reviewed	p.E62D	0.995	354	0%	380	44.5%	0	-	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
CLEC2B	9976	genome.wustl.edu	37	12	10015098	10015098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005127.2	-1	reviewed	p.V25F	0.062	37	0%	24	37.5%	4	0%	unknown(0)	deleterious(0)	-	superfamily_C-type lectin-like
CLEC9A	283420	genome.wustl.edu	37	12	10213831	10213831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207345.2	+1	provisional	p.M93T	0.004	123	0%	159	37.1%	0	-	possibly_damaging(0.55)	tolerated(0.21)	neutral(0.231)	NULL
GUCY2C	2984	genome.wustl.edu	37	12	14794126	14794126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004963.3	-1	validated	p.R653H	0.971	118	0%	163	40.5%	0	-	possibly_damaging(0.599)	deleterious(0.04)	deleterious(0.556)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PTPRO	5800	genome.wustl.edu	37	12	15654980	15654980	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030667.1	+1	reviewed	p.I363N	1.000	199	0%	264	39%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
GYS2	2998	genome.wustl.edu	37	12	21693384	21693384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021957.3	-1	reviewed	p.E590V	1.000	355	0%	456	51.3%	0	-	possibly_damaging(0.515)	deleterious(0)	deleterious(0.618)	HMMPfam_Glycogen_syn,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
KRAS	3845	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T	rs112445441	byCluster	TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.G13D	1.000	62	0%	44	36.4%	10	70%	benign(0.184)	deleterious(0)	neutral(0.462)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNM1L	10059	genome.wustl.edu	37	12	32886654	32886654	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012062.3	+1	reviewed	p.H484	1.000	235	0%	290	39%	69	43.4%	-	-	-	HMMPfam_Dynamin_M
NELL2	4753	genome.wustl.edu	37	12	45269634	45269635	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145107.1	-1	reviewed	p.L56fs	0.993:0.974	-	-	-	-	-	-	-	-	-	NULL
FAM113B	91523	genome.wustl.edu	37	12	47629798	47629798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138371.1	+1	predicted	p.P318T	0.000	127	0%	173	39.3%	1	100%	probably_damaging(0.997)	tolerated(0.11)	deleterious(0.738)	NULL
ANKRD33	341405	genome.wustl.edu	37	12	52284408	52284408	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182608.3	+1	validated	p.T226	0.476	23	0%	47	48.9%	0	-	-	-	-	HMMSmart_SM00248,superfamily_Ankyrin repeat
NR4A1	3164	genome.wustl.edu	37	12	52450303	52450303	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002135.3	+1	reviewed	p.G344	0.320	84	0%	133	39.8%	34	52.9%	-	-	-	superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
KRT8	3856	genome.wustl.edu	37	12	53291257	53291257	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002273.3	-1	reviewed	p.R469	0.008	67	0%	74	28.4%	4688	51.7%	-	-	-	NULL
LRP1	4035	genome.wustl.edu	37	12	57599226	57599226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002332.2	+1	reviewed	p.R3810C	0.959	9	0.000	19	0.421	3	33.3%	possibly_damaging(0.847)	deleterious(0.01)	deleterious(0.731)	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin
MBD6	114785	genome.wustl.edu	37	12	57920713	57920713	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052897.3	+1	validated	p.P595	0.999	65	0%	69	42%	29	62%	-	-	-	NULL
OTOGL	283310	genome.wustl.edu	37	12	80626708	80626708	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343203.1	+1	model	p.I157	0.975	64	0%	66	42.4%	0	-	-	-	-	HMMPfam_VWD,HMMSmart_SM00216
LRRIQ1	84125	genome.wustl.edu	37	12	85449564	85449564	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079910.1	+1	validated	p.K331	0.074	118	0.8%	106	42.5%	1	100%	-	-	-	superfamily_RNI-like
LOC121456	121456	genome.wustl.edu	37	12	98850295	98850296	+	RNA	DEL	TT	TT	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_016411.2	-1	model	NULL	1.000:1.000	-	-	-	-	-	-	-	-	-	-
ANO4	121601	genome.wustl.edu	37	12	101442173	101442173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178826.3	+1	validated	p.V401I	1.000	88	0%	97	17.5%	0	-	benign(0.011)	tolerated(1)	neutral(0.001)	NULL
ANO4	121601	genome.wustl.edu	37	12	101504316	101504316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178826.3	+1	validated	p.S727P	1.000	194	0%	192	48.4%	0	-	possibly_damaging(0.767)	tolerated(0.25)	neutral(0.321)	HMMPfam_DUF590
SPIC	121599	genome.wustl.edu	37	12	101880174	101880174	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152323.1	+1	provisional	p.P124	0.042	200	0%	290	37.6%	0	-	-	-	-	HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785
CMKLR1	1240	genome.wustl.edu	37	12	108686028	108686028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142343.1	-1	validated	p.A238T	0.071	99	0%	136	39.7%	0	-	benign(0.004)	tolerated(0.46)	neutral(0.012)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ACACB	32	genome.wustl.edu	37	12	109675034	109675034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093.3	+1	reviewed	p.R1504Q	1.000	66	0%	106	46.2%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ACC_central
SH2B3	10019	genome.wustl.edu	37	12	111886090	111886090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005475.2	+1	reviewed	p.Q571R	1.000	60	0%	62	45.2%	4	0%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
NAA25	80018	genome.wustl.edu	37	12	112477134	112477134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024953.3	-1	reviewed	p.V850I	0.996	213	0%	247	22.3%	6	16.6%	benign(0)	tolerated(1)	-	NULL
KSR2	283455	genome.wustl.edu	37	12	117968784	117968784	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173598.4	-1	validated	p.A559	0.023	121	0%	197	37.6%	0	-	-	-	-	NULL
SBNO1	55206	genome.wustl.edu	37	12	123794103	123794103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018183.3	-1	validated	p.R1156Q	1.000	441	0%	621	26.6%	24	12.5%	possibly_damaging(0.582)	tolerated(0.23)	neutral(0.242)	NULL
PIWIL1	9271	genome.wustl.edu	37	12	130847536	130847536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004764.3	+1	reviewed	p.A681V	0.832	181	0%	217	47.9%	0	-	benign(0.408)	deleterious(0.01)	deleterious(0.538)	HMMPfam_Piwi,superfamily_Ribonuclease H-like
ENSG00000214029	0	genome.wustl.edu	37	12	133697297	133697297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397313	-1	known	p.P403H	0.999	37	0%	33	51.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
SACS	26278	genome.wustl.edu	37	13	23929681	23929681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014363.4	-1	reviewed	p.S357I	0.460	154	0%	154	45.5%	0	-	benign(0.277)	deleterious(0.05)	neutral(0.375)	NULL
CENPJ	55835	genome.wustl.edu	37	13	25480571	25480571	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018451.3	-1	reviewed	p.R535	0.000	191	0%	234	47.4%	5	40%	-	-	-	NULL
ATP8A2	51761	genome.wustl.edu	37	13	26114521	26114521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016529.4	+1	validated	p.R216C	1.000	93	0%	113	39.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Calcium ATPase transduction domain A
ATP8A2	51761	genome.wustl.edu	37	13	26151239	26151239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016529.4	+1	validated	p.T582I	1.000	355	0%	509	37.3%	0	-	benign(0.222)	tolerated(0.39)	neutral(0.038)	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
PAN3	255967	genome.wustl.edu	37	13	28830663	28830664	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175854.7	+1	validated	p.L213fs	1.000:0.978	-	-	-	-	-	-	-	-	-	NULL
PDS5B	23047	genome.wustl.edu	37	13	33344869	33344869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015032.3	+1	reviewed	p.T1381M	1.000	141	0%	164	42.1%	25	40%	unknown(0)	deleterious(0.02)	-	HMMPfam_AT_hook
POSTN	10631	genome.wustl.edu	37	13	38144765	38144765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006475.2	-1	validated	p.P741S	0.990	138	0%	132	33.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRPC4	7223	genome.wustl.edu	37	13	38225391	38225391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003306.1	-1	validated	p.Q697R	0.058	167	0%	209	39.2%	0	-	benign(0.004)	tolerated(0.58)	neutral(0.005)	NULL
KBTBD6	89890	genome.wustl.edu	37	13	41706221	41706221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152903.4	-1	validated	p.R143C	1.000	118	0%	173	37.6%	5	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB
KIAA0564	23078	genome.wustl.edu	37	13	42465597	42465597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015058.1	-1	validated	p.R204C	1.000	201	0%	263	38.8%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
KCTD4	386618	genome.wustl.edu	37	13	45768019	45768019	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198404.2	-1	validated	p.I228	0.952	194	0%	250	40%	0	-	-	-	-	NULL
KLF5	688	genome.wustl.edu	37	13	73636462	73636462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001730.3	+1	reviewed	p.S242Y	1.000	105	0%	118	40.7%	57	36.8%	possibly_damaging(0.819)	deleterious(0.02)	deleterious(0.693)	NULL
UGGT2	55757	genome.wustl.edu	37	13	96543185	96543185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020121.3	-1	validated	p.M963I	0.941	71	0%	60	25%	5	40%	benign(0)	tolerated(0.33)	neutral(0.024)	HMMPfam_UDP-g_GGTase
MBNL2	10150	genome.wustl.edu	37	13	97999298	97999298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144778.2	+1	reviewed	p.A261T	1.000	12	0%	13	30.8%	3	33.3%	benign(0.047)	tolerated(0.26)	neutral(0.037)	NULL
TFDP1	7027	genome.wustl.edu	37	13	114290383	114290383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007111.4	+1	reviewed	p.P260H	1.000	65	0%	101	45.5%	267	48.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DP
RNASE2	6036	genome.wustl.edu	37	14	21424090	21424090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002934.2	+1	validated	p.M54V	0.065	300	0%	423	42.1%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_RnaseA,HMMSmart_RNAse_Pc,superfamily_RNaseA
RNASE7	84659	genome.wustl.edu	37	14	21511488	21511488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032572.3	+1	validated	p.S113P	0.995	375	0.3%	637	48.4%	0	-	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	HMMPfam_RnaseA,HMMSmart_SM00092,superfamily_RNase A-like
NYNRIN	57523	genome.wustl.edu	37	14	24878720	24878720	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025081.2	+1	validated	p.R574*	0.004	69	0%	100	38%	1	0%	-	-	-	NULL
G2E3	55632	genome.wustl.edu	37	14	31055967	31055967	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017769.3	+1	validated	p.Y27	1.000	53	0%	33	39.4%	3	0%	-	-	-	NULL
HECTD1	25831	genome.wustl.edu	37	14	31618216	31618216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015382.2	-1	validated	p.A769V	1.000	142	0%	118	49.2%	11	72.7%	benign(0.055)	tolerated(1)	neutral(0.004)	superfamily_ARM repeat
MIS18BP1	55320	genome.wustl.edu	37	14	45673600	45673610	+	Frame_Shift_Del	DEL	GTGTATTACCT	GTGTATTACCT	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	GTGTATTACCT	GTGTATTACCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018353.4	-1	validated	p.D1099fs	0.999:1.000:0.999:0.985	-	-	-	-	-	-	-	-	-	NULL
PLEKHG3	26030	genome.wustl.edu	37	14	65207917	65207917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015549.1	+1	validated	p.V505A	0.005	43	0%	37	40.5%	11	72.7%	benign(0.004)	tolerated(0.24)	neutral(0.037)	NULL
SPTB	6710	genome.wustl.edu	37	14	65216399	65216399	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024858.2	-1	reviewed	p.S2264	0.935	16	0%	14	57.1%	0	-	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
SPTB	6710	genome.wustl.edu	37	14	65239531	65239531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024858.2	-1	reviewed	p.G1774W	1.000	37	0%	69	39.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
MPP5	64398	genome.wustl.edu	37	14	67787043	67787043	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022474.2	+1	validated	p.N489T	1.000	154	0.6%	134	44%	18	44.4%	benign(0.183)	tolerated(0.05)	neutral(0.362)	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
PLEKHH1	57475	genome.wustl.edu	37	14	68047706	68047706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020715.2	+1	validated	p.G1079R	0.698	69	1.4%	97	41.2%	18	38.8%	benign(0.043)	deleterious(0)	neutral(0.447)	HMMSmart_SM00295
LTBP2	4053	genome.wustl.edu	37	14	74969967	74969967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000428.2	-1	reviewed	p.E1615K	1.000	19	0%	30	46.7%	16	31.2%	probably_damaging(1)	tolerated(0.27)	deleterious(0.533)	HMMPfam_TB,superfamily_TB module/8-cys domain
IRF2BPL	64207	genome.wustl.edu	37	14	77492081	77492081	+	Silent	SNP	G	G	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024496.2	-1	validated	p.P685	0.992	13	0%	12	50%	34	17.6%	-	-	-	NULL
TTC8	123016	genome.wustl.edu	37	14	89307533	89307533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144596.2	+1	reviewed	p.L161P	1.000	145	0%	115	38.3%	10	40%	benign(0.064)	deleterious(0)	neutral(0.449)	NULL
MOK	5891	genome.wustl.edu	37	14	102698943	102698943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014226.1	-1	provisional	p.M265I	1.000	178	0%	176	42.6%	7	57.1%	possibly_damaging(0.793)	deleterious(0.03)	deleterious(0.662)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TECPR2	9895	genome.wustl.edu	37	14	102912165	102912165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014844.3	+1	validated	p.V986I	0.996	83	0%	91	20.9%	8	50%	benign(0.382)	tolerated(0.44)	neutral(0.135)	HMMSmart_TECPR
ZFYVE21	79038	genome.wustl.edu	37	14	104198969	104198969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024071.2	+1	provisional	p.R180Q	0.964	20	0%	26	46.2%	97	35%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	NULL
TUBGCP5	114791	genome.wustl.edu	37	15	22855131	22855131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102610.1	+1	validated	p.A531V	0.994	62	0%	81	35.8%	12	66.6%	possibly_damaging(0.541)	tolerated(0.31)	neutral(0.210)	HMMPfam_Spc97_Spc98
ATP10A	57194	genome.wustl.edu	37	15	25925385	25925385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024490.3	-1	reviewed	p.A1250V	0.533	158	0%	178	47.8%	0	-	possibly_damaging(0.666)	tolerated(0.18)	neutral(0.292)	NULL
GABRG3	2567	genome.wustl.edu	37	15	27765156	27765156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033223.4	+1	validated	p.R251G	1.000	57	0%	36	44.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
HERC2	8924	genome.wustl.edu	37	15	28389094	28389094	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.L3781	0.999	165	0%	271	35.1%	12	58.3%	-	-	-	NULL
HERC2	8924	genome.wustl.edu	37	15	28463709	28463709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.M1985T	1.000	179	0.6%	206	45.6%	2	0%	benign(0.004)	deleterious(0.01)	neutral(0.406)	NULL
LOC728310	728310	genome.wustl.edu	37	15	29087688	29087688	+	RNA	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078490.1	-1	model	NULL	0.003	10	0%	20	45%	0	-	-	-	-	-
TRPM1	4308	genome.wustl.edu	37	15	31318416	31318416	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002420.4	-1	reviewed	p.V1163	1.000	54	0%	102	45.1%	0	-	-	-	-	NULL
C15orf55	256646	genome.wustl.edu	37	15	34648160	34648160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175741.1	+1	validated	p.C623R	0.006	84	0%	109	42.2%	0	-	benign(0.006)	deleterious(0)	neutral(0.445)	NULL
ZFYVE19	84936	genome.wustl.edu	37	15	41105019	41105019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077268.1	+1	validated	p.R317W	0.968	50	0%	91	45.1%	61	8.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TYRO3	7301	genome.wustl.edu	37	15	41870441	41870441	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006293.3	+1	reviewed	p.L880	0.989	58	0%	73	24.7%	19	0%	-	-	-	NULL
MAPKBP1	23005	genome.wustl.edu	37	15	42104215	42104215	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128608.1	+1	validated	p.L130	1.000	42	0%	96	49%	3	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
JMJD7-PLA2G4B	8681	genome.wustl.edu	37	15	42135904	42135904	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005090.3	+1	validated	p.F489	0.111	21	0%	29	34.5%	2	100%	-	-	-	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
SEMA6D	80031	genome.wustl.edu	37	15	48056849	48056849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153618.1	+1	reviewed	p.A371V	1.000	162	0%	259	42.9%	1	0%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SHC4	399694	genome.wustl.edu	37	15	49254760	49254760	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203349.3	-1	validated	p.V151	0.003	39	0%	55	45.5%	0	-	-	-	-	NULL
ATP8B4	79895	genome.wustl.edu	37	15	50366325	50366325	+	Missense_Mutation	SNP	G	G	A	rs182947621	by1000genomes	TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024837.2	-1	validated	p.A29V	0.102	94	0%	122	36.9%	0	-	benign(0.002)	tolerated(0.13)	neutral(0.253)	NULL
GNB5	10681	genome.wustl.edu	37	15	52420395	52420395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016194.3	-1	reviewed	p.T304A	1.000	156	0%	223	37.7%	43	51.1%	benign(0.037)	deleterious(0)	neutral(0.447)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
RFX7	64864	genome.wustl.edu	37	15	56385854	56385854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022841.5	-1	validated	p.S1358G	1.000	73	0%	70	50%	4	50%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
ADAM10	102	genome.wustl.edu	37	15	58938273	58938273	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110.2	-1	reviewed	p.R239Q	1.000	198	0%	143	37.8%	21	57.1%	probably_damaging(0.961)	tolerated(0.09)	deleterious(0.701)	HMMPfam_Reprolysin,superfamily_SSF55486
TIPIN	54962	genome.wustl.edu	37	15	66633524	66633524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017858.2	-1	validated	p.A216T	1.000	122	0%	184	15.2%	15	13.3%	possibly_damaging(0.952)	tolerated(0.27)	neutral(0.429)	NULL
LCTL	197021	genome.wustl.edu	37	15	66850163	66850163	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207338.2	-1	validated	p.P273	0.999	264	0.4%	411	18%	0	-	-	-	-	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
PML	5371	genome.wustl.edu	37	15	74290467	74290467	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033238.2	+1	reviewed	p.S84	0.000	41	2.4%	68	33.8%	17	47%	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
PML	5371	genome.wustl.edu	37	15	74325022	74325022	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033238.2	+1	reviewed	p.Y455F	0.025	64	0%	101	28.7%	34	50%	benign(0.009)	deleterious(0)	neutral(0.445)	NULL
SGK269	79834	genome.wustl.edu	37	15	77473265	77473265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024776.2	-1	validated	p.S335N	1.000	307	0%	427	41.2%	5	40%	possibly_damaging(0.949)	deleterious(0.02)	deleterious(0.776)	NULL
PDE8A	5151	genome.wustl.edu	37	15	85610390	85610390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002605.2	+1	validated	p.I130T	0.997	159	0%	257	40.9%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Response_reg
AKAP13	11214	genome.wustl.edu	37	15	86125312	86125312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006738.4	+1	reviewed	p.P1338H	0.000	71	0%	108	50%	3	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
IFT140	9742	genome.wustl.edu	37	16	1630789	1630789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014714.3	-1	validated	p.S499P	1.000	24	0%	36	33.3%	16	50%	benign(0)	tolerated(1)	-	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
C16orf73	254528	genome.wustl.edu	37	16	1884269	1884269	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152764.2	-1	validated	p.Q439	0.002	32	0%	39	30.8%	0	-	-	-	-	NULL
TSC2	7249	genome.wustl.edu	37	16	2106763	2106763	+	Missense_Mutation	SNP	G	G	A	rs137854025		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000548.3	+1	reviewed	p.C256Y	1.000	63	0%	128	45.3%	26	50%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	superfamily_ARM repeat
ZNF263	10127	genome.wustl.edu	37	16	3340260	3340260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005741.4	+1	validated	p.R585Q	0.994	103	0%	83	38.6%	15	73.3%	probably_damaging(0.969)	deleterious(0.04)	deleterious(0.760)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
UBN1	29855	genome.wustl.edu	37	16	4925244	4925244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079514.1	+1	validated	p.A945T	0.006	124	0%	203	47.8%	6	83.3%	benign(0.006)	tolerated(0.17)	neutral(0.059)	NULL
CIITA	4261	genome.wustl.edu	37	16	11000785	11000785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000246.3	+1	reviewed	p.A479V	0.000	113	0%	133	44.4%	0	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMPfam_NACHT
CLEC16A	23274	genome.wustl.edu	37	16	11051713	11051713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015226.2	+1	validated	p.R52H	1.000	165	0%	215	45.1%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FPL
NOMO1	23420	genome.wustl.edu	37	16	14975509	14975509	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014287.3	+1	reviewed	p.D998	0.954	342	0%	436	14.4%	143	7.6%	-	-	-	superfamily_Carboxypeptidase regulatory domain
KIAA0430	9665	genome.wustl.edu	37	16	15696369	15696370	+	In_Frame_Ins	INS	-	-	AAGAAGACGAAGACGACGATA	rs138899406	by1000genomes	TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000344181	-1	known	p.1154in_frame_insFVFFIVV	0.000:0.001	-	-	-	-	-	-	-	-	-	NULL
NOMO2	283820	genome.wustl.edu	37	16	18532148	18532148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004060.1	-1	reviewed	p.V738M	0.959	510	0%	798	15.5%	98	13.2%	possibly_damaging(0.59)	tolerated(0.12)	neutral(0.465)	NULL
SMG1	23049	genome.wustl.edu	37	16	18840901	18840901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015092.4	-1	reviewed	p.L3104I	1.000	154	0%	173	32.4%	9	66.6%	probably_damaging(0.957)	tolerated(0.78)	neutral(0.402)	NULL
UMOD	7369	genome.wustl.edu	37	16	20355478	20355478	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008389.1	-1	reviewed	p.A400V	1.000	35	0%	72	38.9%	0	-	benign(0.145)	tolerated(0.92)	neutral(0.013)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
SPN	6693	genome.wustl.edu	37	16	29675791	29675791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030288.1	+1	validated	p.P248T	0.000	84	0%	107	35.5%	0	-	probably_damaging(0.989)	tolerated(0.05)	deleterious(0.785)	NULL
PRSS36	146547	genome.wustl.edu	37	16	31159945	31159945	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173502.3	-1	validated	p.H108	1.000	9	0.000	15	0.267	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ARMC5	79798	genome.wustl.edu	37	16	31477779	31477779	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105247.1	+1	validated	p.R793*	0.331	12	0%	11	45.5%	6	16.6%	-	-	-	NULL
ABCC11	85320	genome.wustl.edu	37	16	48204026	48204026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032583.3	-1	reviewed	p.R1294H	0.999	177	0%	306	43.8%	3	33.3%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
C16orf78	123970	genome.wustl.edu	37	16	49412411	49412411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144602.2	+1	predicted	p.A101T	0.000	38	0%	59	49.2%	0	-	benign(0.032)	tolerated(0.42)	neutral(0.015)	NULL
HEATR3	55027	genome.wustl.edu	37	16	50102702	50102702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182922.2	+1	provisional	p.A108V	1.000	239	0%	241	43.6%	17	35.2%	benign(0.345)	tolerated(0.99)	neutral(0.109)	superfamily_ARM repeat
ADCY7	113	genome.wustl.edu	37	16	50344747	50344747	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114.3	+1	reviewed	p.C770	0.000	35	0%	51	52.9%	5	40%	-	-	-	NULL
CETP	1071	genome.wustl.edu	37	16	57007351	57007351	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000078.2	+1	reviewed	p.F287V	0.108	102	0%	131	42%	0	-	benign(0.19)	deleterious(0.02)	neutral(0.401)	HMMPfam_LBP_BPI_CETP_C,HMMSmart_SM00329,superfamily_Bactericidal permeability-increasing protein BPI
EDC4	23644	genome.wustl.edu	37	16	67917473	67917473	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014329.3	+1	validated	p.A1284	0.720	251	0%	296	49%	85	48.2%	-	-	-	NULL
WWP2	11060	genome.wustl.edu	37	16	69968028	69968028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007014.3	+1	reviewed	p.A613V	1.000	63	0%	78	30.8%	22	54.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT
FUK	197258	genome.wustl.edu	37	16	70502792	70502792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145059.2	+1	reviewed	p.R235H	0.988	34	0%	48	47.9%	21	33.3%	benign(0.002)	tolerated(0.3)	neutral(0.029)	HMMPfam_Fucokinase
HYDIN	54768	genome.wustl.edu	37	16	70897063	70897063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032821.2	-1	validated	p.R3831C	0.043	62	0%	96	46.9%	0	-	possibly_damaging(0.641)	tolerated(0.05)	deleterious(0.570)	NULL
ZFHX3	463	genome.wustl.edu	37	16	72830196	72830196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.A2129T	1.000	81	0%	91	35.2%	2	100%	unknown(0)	-	-	NULL
IRF8	3394	genome.wustl.edu	37	16	85946829	85946829	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002163.2	+1	reviewed	p.Q180	1.000	40	0%	59	54.2%	1	0%	-	-	-	NULL
ZCCHC14	23174	genome.wustl.edu	37	16	87493648	87493648	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015144.2	-1	validated	p.S83	0.703	280	0%	385	43.1%	4	50%	-	-	-	NULL
ZCCHC14	23174	genome.wustl.edu	37	16	87493713	87493713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015144.2	-1	validated	p.V62I	0.048	245	0%	357	44%	3	100%	unknown(0)	tolerated(0.37)	-	NULL
MC1R	4157	genome.wustl.edu	37	16	89986143	89986143	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002386.3	+1	reviewed	p.P159	0.142	17	0%	12	33.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
YWHAE	7531	genome.wustl.edu	37	17	1248584	1248586	+	RNA	DEL	AAA	AAA	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024058.1	-1	reviewed	NULL	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	-
PRPF8	10594	genome.wustl.edu	37	17	1582133	1582133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006445.3	-1	reviewed	p.R548W	1.000	88	0%	212	41%	42	40.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PROCN
MYBBP1A	10514	genome.wustl.edu	37	17	4442893	4442893	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105538.1	-1	validated	p.P1268	0.003	122	0%	103	46.6%	60	48.3%	-	-	-	NULL
MYBBP1A	10514	genome.wustl.edu	37	17	4458462	4458462	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105538.1	-1	validated	p.A53V	1.000	4	0.000	14	0.429	38	42.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM-type_fold
LOC100288822	100288822	genome.wustl.edu	37	17	4692468	4692468	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343474.1	-1	model	p.*369R	0.003	11	0%	15	40%	1	100%	-	-	-	NULL
CAMTA2	23125	genome.wustl.edu	37	17	4876150	4876150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015099.3	-1	validated	p.A806V	1.000	117	0%	172	43.6%	20	50%	possibly_damaging(0.913)	tolerated(0.23)	neutral(0.406)	HMMPfam_Ank,superfamily_Ankyrin repeat
KIF1C	10749	genome.wustl.edu	37	17	4905844	4905844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006612.5	+1	validated	p.P172L	1.000	168	0%	236	42.8%	66	53%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
WSCD1	23302	genome.wustl.edu	37	17	6023810	6023810	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015253.1	+1	validated	p.C519	0.993	91	0%	81	50.6%	0	-	-	-	-	superfamily_SSF52540
BCL6B	255877	genome.wustl.edu	37	17	6930407	6930407	+	Splice_Site	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181844.3	+1	validated	e7+1	1.000	44	0%	82	42.7%	0	-	-	-	-	-
MPDU1	9526	genome.wustl.edu	37	17	7490370	7490370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000449455	+1	known	p.G181V	0.000	28	0%	60	63.3%	0	-	-	-	-	NULL
FXR2	9513	genome.wustl.edu	37	17	7495655	7495655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004860.3	-1	reviewed	p.I615V	1.000	216	0%	346	45.1%	35	62.8%	probably_damaging(0.982)	tolerated(0.08)	deleterious(0.726)	NULL
WRAP53	55135	genome.wustl.edu	37	17	7606776	7606776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018081.2	+1	validated	p.T540M	0.000	53	0%	57	35.1%	13	46.1%	unknown(0)	deleterious(0.01)	-	NULL
CHD3	1107	genome.wustl.edu	37	17	7792988	7792988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005271.2	+1	reviewed	p.D95G	1.000	44	0%	82	51.2%	2	0%	benign(0.063)	-	-	NULL
CHD3	1107	genome.wustl.edu	37	17	7812640	7812640	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005271.2	+1	reviewed	p.N1917	1.000	4	0.000	11	0.545	185	45.4%	-	-	-	HMMPfam_CHDCT2
PFAS	5198	genome.wustl.edu	37	17	8160251	8160251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012393.2	+1	reviewed	p.G349C	1.000	50	0%	75	46.7%	13	69.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AIRS,superfamily_PurM N-terminal domain-like
MYH4	4622	genome.wustl.edu	37	17	10348418	10348418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017533.2	-1	validated	p.A1781T	1.000	280	0%	366	41.8%	0	-	probably_damaging(0.987)	tolerated(0.42)	neutral(0.451)	HMMPfam_Myosin_tail_1
MYH1	4619	genome.wustl.edu	37	17	10412824	10412824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005963.3	-1	reviewed	p.A522V	1.000	206	0%	176	47.2%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MYH2	4620	genome.wustl.edu	37	17	10442823	10442823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100112.1	-1	reviewed	p.L402I	1.000	209	0%	295	39%	0	-	benign(0.002)	tolerated(0.25)	neutral(0.037)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
LOC100287710	100287710	genome.wustl.edu	37	17	13399967	13399967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343489.1	+1	model	p.R117C	1.000	168	0%	252	36.9%	1	100%	-	-	-	NULL
MYO15A	51168	genome.wustl.edu	37	17	18075512	18075512	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016239.3	+1	reviewed	p.F3420I	1.000	55	0%	56	30.4%	0	-	benign(0.256)	tolerated(0.38)	neutral(0.044)	NULL
NOS2	4843	genome.wustl.edu	37	17	26091024	26091024	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000625.4	-1	reviewed	p.L859	1.000	20	0%	21	33.3%	0	-	-	-	-	HMMPfam_FAD_binding_1,superfamily_Riboflavin synthase domain-like
CCL7	6354	genome.wustl.edu	37	17	32597347	32597347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006273.2	+1	reviewed	p.T13I	0.000	137	0%	165	46.7%	0	-	unknown(0)	-	-	NULL
NEUROD2	4761	genome.wustl.edu	37	17	37761840	37761840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006160.3	-1	reviewed	p.T338M	0.035	17	0%	13	69.2%	0	-	benign(0.108)	tolerated(0.26)	neutral(0.043)	NULL
KRT12	3859	genome.wustl.edu	37	17	39020074	39020074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000223.3	-1	reviewed	p.V284I	1.000	25	0%	38	50%	0	-	probably_damaging(0.974)	deleterious(0.03)	deleterious(0.780)	HMMPfam_Filament
GHDC	84514	genome.wustl.edu	37	17	40345364	40345364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032484.4	-1	validated	p.R79H	0.001	23	0%	28	53.6%	27	44.4%	probably_damaging(0.991)	tolerated(0.16)	deleterious(0.504)	HMMPfam_GH3
ASB16	92591	genome.wustl.edu	37	17	42255735	42255735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080863.4	+1	reviewed	p.R447C	0.399	10	0%	22	36.4%	3	66.6%	benign(0.002)	tolerated(0.08)	neutral(0.300)	HMMPfam_SOCS_box
KPNB1	3837	genome.wustl.edu	37	17	45757996	45757997	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290158	+1	known	p.W864fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_ARM repeat
KPNB1	3837	genome.wustl.edu	37	17	45757997	45757997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290158	+1	known	p.W864C	1.000	101	0%	207	37.2%	427	24.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
MRPL10	124995	genome.wustl.edu	37	17	45905949	45905949	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145255.2	-1	reviewed	p.L47R	1.000	42	0%	65	36.9%	53	45.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HOXB3	3213	genome.wustl.edu	37	17	46628473	46628473	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002146.4	-1	reviewed	p.G173	1.000	11	0%	12	58.3%	0	-	-	-	-	NULL
KIF2B	84643	genome.wustl.edu	37	17	51901676	51901676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032559.4	+1	validated	p.V428M	0.632	125	0%	167	44.9%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
EPX	8288	genome.wustl.edu	37	17	56274451	56274451	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000502.4	+1	reviewed	p.E318A	1.000	150	0%	219	36.1%	0	-	possibly_damaging(0.899)	tolerated(0.08)	deleterious(0.656)	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
HEATR6	63897	genome.wustl.edu	37	17	58132903	58132903	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022070.4	-1	validated	p.A754	0.058	48	0%	71	35.2%	10	60%	-	-	-	superfamily_ARM-type_fold
SCN4A	6329	genome.wustl.edu	37	17	62026052	62026052	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000334.4	-1	reviewed	p.R1021	0.999	36	0%	40	47.5%	0	-	-	-	-	HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels
BPTF	2186	genome.wustl.edu	37	17	65870996	65870996	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182641.3	+1	reviewed	p.T576fs	0.973	-	-	-	-	-	-	-	-	-	NULL
SLC26A11	284129	genome.wustl.edu	37	17	78210848	78210848	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173626.3	+1	reviewed	p.P286	0.823	43	0%	79	27.8%	15	26.6%	-	-	-	HMMPfam_Sulfate_transp
ACTG1	71	genome.wustl.edu	37	17	79478363	79478363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001614.2	-1	reviewed	p.Y218C	1.000	41	0%	27	37%	8035	48.8%	possibly_damaging(0.503)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
C17orf62	79415	genome.wustl.edu	37	17	80401662	80401662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342572	-1	known	p.H117Y	0.001	21	0%	19	36.8%	55	25.4%	possibly_damaging(0.873)	tolerated(0.06)	deleterious(0.661)	NULL
ZNF519	162655	genome.wustl.edu	37	18	14105532	14105532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145287.3	-1	validated	p.T336I	0.001	392	0%	499	38.1%	2	50%	possibly_damaging(0.455)	tolerated(0.16)	neutral(0.208)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DSC3	1825	genome.wustl.edu	37	18	28576764	28576764	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001941.3	-1	reviewed	p.L829R	0.981	144	0%	165	36.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FHOD3	80206	genome.wustl.edu	37	18	34174815	34174815	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025135.2	+1	validated	p.N224	0.726	101	0%	156	39.7%	0	-	-	-	-	superfamily_ARM-type_fold
SLC14A2	8170	genome.wustl.edu	37	18	43205788	43205788	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007163.3	+1	validated	p.Y97	1.000	107	0%	204	47.1%	0	-	-	-	-	NULL
TCEB3B	51224	genome.wustl.edu	37	18	44561289	44561289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016427.2	-1	reviewed	p.A116V	0.000	57	0%	46	34.8%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
CXXC1	30827	genome.wustl.edu	37	18	47810330	47810330	+	Silent	SNP	G	G	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101654.1	-1	validated	p.R453	0.995	180	0%	333	15.3%	64	10.9%	-	-	-	NULL
ALPK2	115701	genome.wustl.edu	37	18	56202968	56202968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052947.3	-1	validated	p.P1484H	0.000	131	0.8%	136	45.6%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
ZNF532	55205	genome.wustl.edu	37	18	56585626	56585626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018181.4	+1	validated	p.D36G	1.000	230	0%	295	42%	7	42.8%	benign(0.117)	deleterious(0.01)	neutral(0.415)	NULL
KIAA1468	57614	genome.wustl.edu	37	18	59925765	59925765	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020854.3	+1	validated	p.S686	0.997	135	0%	93	33.3%	10	30%	-	-	-	superfamily_ARM repeat
CBLN2	147381	genome.wustl.edu	37	18	70209102	70209102	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182511.3	-1	validated	p.T98	0.974	12	0%	11	45.5%	0	-	-	-	-	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
ZNF407	55628	genome.wustl.edu	37	18	72589190	72589190	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017757.2	+1	reviewed	p.E1639*	1.000	131	0%	164	31.7%	12	8.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF555	148254	genome.wustl.edu	37	19	2852522	2852522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152791.4	+1	validated	p.M153I	0.000	95	0%	143	20.3%	2	0%	benign(0.001)	tolerated(0.49)	neutral(0.011)	superfamily_C2H2 and C2HC zinc fingers
PLIN4	729359	genome.wustl.edu	37	19	4512087	4512087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080400.1	-1	provisional	p.G615S	0.975	121	0%	102	47.1%	1	100%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
CLEC4M	10332	genome.wustl.edu	37	19	7828096	7828096	+	RNA	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026707.1	+1	reviewed	NULL	0.005	88	0%	108	45.4%	0	-	-	-	-	-
MUC16	94025	genome.wustl.edu	37	19	9061016	9061016	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.A8810	0.000	190	0%	377	48.3%	7	42.8%	-	-	-	NULL
OR1M1	125963	genome.wustl.edu	37	19	9204579	9204579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004456.1	+1	provisional	p.R220H	0.000	180	0%	311	48.9%	0	-	benign(0.003)	tolerated(0.4)	neutral(0.016)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF699	374879	genome.wustl.edu	37	19	9413061	9413061	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198535.1	-1	provisional	p.A56	1.000	213	0%	222	44.1%	0	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
TYK2	7297	genome.wustl.edu	37	19	10475630	10475630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003331.4	-1	reviewed	p.P369L	0.000	20	0%	46	47.8%	35	57.1%	benign(0.005)	tolerated(0.37)	neutral(0.019)	NULL
DOCK6	57572	genome.wustl.edu	37	19	11312670	11312670	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020812.2	-1	validated	p.R1861	0.461	29	0%	26	30.8%	29	41.3%	-	-	-	HMMPfam_Ded_cyto
ZSWIM4	65249	genome.wustl.edu	37	19	13941337	13941337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023072.2	+1	validated	p.R815C	1.000	91	0%	117	48.7%	17	58.8%	probably_damaging(0.981)	tolerated(0.13)	deleterious(0.678)	NULL
CIB3	117286	genome.wustl.edu	37	19	16275653	16275653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054113.2	-1	reviewed	p.L140M	1.000	94	0%	172	38.4%	0	-	probably_damaging(0.987)	deleterious(0.03)	deleterious(0.801)	superfamily_EF-hand
SIN3B	23309	genome.wustl.edu	37	19	16942359	16942359	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015260.1	+1	provisional	p.P94	0.729	182	0%	163	44.2%	12	25%	-	-	-	HMMPfam_PAH,superfamily_PAH2 domain
CPAMD8	27151	genome.wustl.edu	37	19	17056376	17056376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015692.2	-1	validated	p.R973C	0.987	58	1.7%	100	41%	3	0%	benign(0.08)	tolerated(0.08)	neutral(0.305)	NULL
HAUS8	93323	genome.wustl.edu	37	19	17160706	17160707	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033417.1	-1	validated	p.R404fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
MRPL34	64981	genome.wustl.edu	37	19	17416723	17416723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023937.3	+1	reviewed	p.L8M	0.001	9	0.000	18	0.444	94	34%	benign(0.025)	tolerated(0.11)	neutral(0.273)	NULL
ANO8	57719	genome.wustl.edu	37	19	17441046	17441046	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020959.2	-1	validated	p.S387	0.622	29	0%	30	40%	8	62.5%	-	-	-	NULL
SLC27A1	376497	genome.wustl.edu	37	19	17611637	17611637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198580.1	+1	provisional	p.R530C	0.998	12	0%	30	46.7%	3	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_AMP-binding,superfamily_SSF56801
ARRDC2	27106	genome.wustl.edu	37	19	18119848	18119848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015683.1	+1	validated	p.R137Q	1.000	33	0%	45	40%	8	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Arrestin_N,superfamily_E set domains
ZNF536	9745	genome.wustl.edu	37	19	31040074	31040074	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014717.1	+1	provisional	p.V1183D	0.025	82	0%	111	14.4%	0	-	benign(0.014)	deleterious(0.01)	neutral(0.406)	NULL
RHPN2	85415	genome.wustl.edu	37	19	33499030	33499030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033103.4	-1	reviewed	p.A217V	1.000	55	0%	87	34.5%	29	48.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BRO1
WDR88	126248	genome.wustl.edu	37	19	33666371	33666371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173479.3	+1	validated	p.V438M	0.978	135	0%	154	46.8%	2	100%	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	NULL
ZNF599	148103	genome.wustl.edu	37	19	35251440	35251440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007248.2	-1	validated	p.T89I	0.025	129	0%	147	46.3%	0	-	possibly_damaging(0.45)	tolerated(0.44)	neutral(0.160)	NULL
NFKBID	84807	genome.wustl.edu	37	19	36380886	36380886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139239.1	-1	provisional	p.R265Q	1.000	25	0%	55	45.5%	2	0%	possibly_damaging(0.885)	tolerated(0.12)	deleterious(0.607)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
NFKBID	84807	genome.wustl.edu	37	19	36388735	36388735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000352614	-1	known	p.S94P	0.202	34	0%	35	14.3%	2	0%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
SIPA1L3	23094	genome.wustl.edu	37	19	38610115	38610115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015073.1	+1	validated	p.R821C	1.000	78	0%	88	27.3%	28	32.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Rap_GAP,superfamily_SSF111347
SIPA1L3	23094	genome.wustl.edu	37	19	38633324	38633324	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015073.1	+1	validated	p.Y1169	0.978	301	0%	662	39.7%	27	25.9%	-	-	-	NULL
CATSPERG	57828	genome.wustl.edu	37	19	38853433	38853433	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021185.4	+1	validated	p.K812	0.000	91	0%	142	38%	0	-	-	-	-	NULL
SHKBP1	92799	genome.wustl.edu	37	19	41086500	41086500	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138392.3	+1	validated	p.R197	0.975	94	0%	124	47.6%	42	47.6%	-	-	-	superfamily_WD40 repeat-like
ADCK4	79934	genome.wustl.edu	37	19	41211263	41211263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024876.3	-1	validated	p.A153T	1.000	48	0%	72	37.5%	9	55.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CYP2A7P1	1550	genome.wustl.edu	37	19	41532001	41532001	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000301171	-1	known	p.L135	0.997	9	0.000	22	0.591	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
CIC	23152	genome.wustl.edu	37	19	42798976	42798976	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015125.3	+1	validated	p.Q1488fs	1.000	-	-	-	-	-	-	-	-	-	NULL
ZFP112	7771	genome.wustl.edu	37	19	44833216	44833216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083335.1	-1	validated	p.S371N	0.000	140	0%	146	39%	0	-	benign(0.037)	tolerated(0.35)	neutral(0.022)	superfamily_C2H2 and C2HC zinc fingers
CLASRP	11129	genome.wustl.edu	37	19	45573299	45573303	+	Frame_Shift_Del	DEL	AAGGA	AAGGA	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	AAGGA	AAGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007056.2	+1	validated	p.K632fs	1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
FBXO46	23403	genome.wustl.edu	37	19	46216692	46216692	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080469.1	-1	provisional	p.S21*	1.000	27	0%	40	42.5%	29	48.2%	-	-	-	NULL
RSPH6A	81492	genome.wustl.edu	37	19	46307854	46307854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030785.3	-1	reviewed	p.P437S	0.018	37	0%	74	51.4%	0	-	possibly_damaging(0.872)	tolerated(0.1)	deleterious(0.625)	HMMPfam_Radial_spoke
ZC3H4	23211	genome.wustl.edu	37	19	47575286	47575286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015168.1	-1	validated	p.M632T	1.000	20	0%	12	58.3%	21	28.5%	unknown(0)	tolerated(0.31)	-	NULL
TMEM143	55260	genome.wustl.edu	37	19	48845876	48845876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018273.2	-1	provisional	p.V296M	1.000	69	0%	140	37.9%	10	50%	possibly_damaging(0.918)	tolerated(0.18)	neutral(0.424)	NULL
TEAD2	8463	genome.wustl.edu	37	19	49844622	49844622	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003598.1	-1	provisional	p.R435C	1.000	69	0%	109	44%	89	86.5%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_TEA
NUP62	23636	genome.wustl.edu	37	19	50412225	50412230	+	In_Frame_Del	DEL	GGTGGC	GGTGGC	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	GGTGGC	GGTGGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012346.3	-1	reviewed	p.AT279in_frame_del	0.004:0.007:0.000:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
MYBPC2	4606	genome.wustl.edu	37	19	50962430	50962430	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004533.3	+1	validated	p.V886	0.998	5	0.000	8	0.625	1	0%	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
GPR32	2854	genome.wustl.edu	37	19	51274590	51274590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001506.1	+1	provisional	p.R245W	0.079	40	2.5%	143	58.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
LIM2	3982	genome.wustl.edu	37	19	51890474	51890474	+	Missense_Mutation	SNP	G	G	A	rs2547311		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030657.3	-1	reviewed	p.A75V	0.004	42	0%	68	47.1%	0	-	benign(0.278)	tolerated(0.18)	neutral(0.086)	HMMPfam_PMP22_Claudin
TMC4	147798	genome.wustl.edu	37	19	54673380	54673380	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145303.1	-1	validated	p.R110S	0.000	54	0%	111	45%	21	47.6%	possibly_damaging(0.717)	tolerated(0.08)	deleterious(0.559)	NULL
LILRA6	79168	genome.wustl.edu	37	19	54744236	54744236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024318.2	-1	validated	p.A391V	0.000	174	0.6%	189	29.6%	0	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
PPP1R12C	54776	genome.wustl.edu	37	19	55610165	55610165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017607.2	-1	provisional	p.R313Q	0.398	10	0%	21	42.9%	22	27.2%	benign(0.008)	tolerated(0.21)	neutral(0.044)	NULL
ZNF547	284306	genome.wustl.edu	37	19	57889498	57889498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173631.2	+1	validated	p.K385R	0.946	279	0.7%	403	40%	7	57.1%	probably_damaging(0.979)	tolerated(0.06)	deleterious(0.744)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF324B	388569	genome.wustl.edu	37	19	58967676	58967676	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207395.2	+1	validated	p.C455	0.052	48	0%	75	40%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TMEM74B	55321	genome.wustl.edu	37	20	1161797	1161797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018354.1	-1	provisional	p.A156T	0.999	79	0%	115	45.2%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SDCBP2	27111	genome.wustl.edu	37	20	1299025	1299025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080489.3	-1	validated	p.M54I	1.000	116	0%	153	24.2%	2	0%	possibly_damaging(0.703)	deleterious(0.01)	deleterious(0.658)	NULL
PRND	23627	genome.wustl.edu	37	20	4705724	4705724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012409.2	+1	reviewed	p.K176R	0.001	28	0%	51	35.3%	0	-	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	HMMPfam_Prion
RIN2	54453	genome.wustl.edu	37	20	19955329	19955329	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018993.2	+1	reviewed	p.P220	0.999	100	0%	89	32.6%	2	50%	-	-	-	NULL
PYGB	5834	genome.wustl.edu	37	20	25255332	25255332	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002862.3	+1	reviewed	p.P211	0.017	45	0%	49	32.7%	56	23.2%	-	-	-	HMMPfam_Phosphorylase,superfamily_SSF53756
NCOA6	23054	genome.wustl.edu	37	20	33330968	33330970	+	In_Frame_Del	DEL	TGC	TGC	-	rs112895426	byFrequency	TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.Q1032in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PHF20	51230	genome.wustl.edu	37	20	34526651	34526651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016436.4	+1	validated	p.C778Y	1.000	202	0%	297	56.2%	14	57.1%	possibly_damaging(0.94)	tolerated(0.07)	deleterious(0.704)	NULL
CHD6	84181	genome.wustl.edu	37	20	40050151	40050151	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032221.3	-1	reviewed	p.Y1708	0.981	188	0%	243	40.7%	5	40%	-	-	-	NULL
KCNK15	60598	genome.wustl.edu	37	20	43378827	43378827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022358.2	+1	reviewed	p.A114V	1.000	13	7.7%	15	60%	23	26%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans_2,superfamily_SSF81324
TNNC2	7125	genome.wustl.edu	37	20	44453219	44453220	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003279.2	-1	reviewed	p.E39fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
PREX1	57580	genome.wustl.edu	37	20	47248966	47248966	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396220	-1	known	p.S1493	0.000	47	0%	74	48.6%	0	-	-	-	-	NULL
ARFGEF2	10564	genome.wustl.edu	37	20	47611056	47611056	+	Silent	SNP	G	G	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006420.2	+1	reviewed	p.L1014	0.999	106	0%	196	38.8%	1	100%	-	-	-	superfamily_ARM-type_fold
ADNP	23394	genome.wustl.edu	37	20	49510722	49510723	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015339.2	-1	reviewed	p.Y177fs	1.000:0.971	-	-	-	-	-	-	-	-	-	HMMSmart_ZnF_C2H2
SALL4	57167	genome.wustl.edu	37	20	50408581	50408581	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020436.3	-1	reviewed	p.P147	0.000	208	0%	356	40.7%	1	0%	-	-	-	NULL
GNAS	2778	genome.wustl.edu	37	20	57415294	57415295	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016592.2	+1	reviewed	p.A46fs	0.973:0.733	-	-	-	-	-	-	-	-	-	HMMPfam_NESP55
LSM14B	149986	genome.wustl.edu	37	20	60701310	60701310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400318	+1	known	p.R107Q	0.003	13	0%	17	35.3%	7	85.7%	unknown(0)	tolerated(0.19)	-	NULL
CHRNA4	1137	genome.wustl.edu	37	20	61981756	61981756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000744.5	-1	reviewed	p.R336H	1.000	14	0%	12	41.7%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
IGHV1OR15-5	100384884	genome.wustl.edu	37	21	10862764	10862764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000302092	+1	known	p.Q20H	0.524	347	0%	482	28.4%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_V-set
USP16	10600	genome.wustl.edu	37	21	30421169	30421169	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032410.1	+1	reviewed	p.F700C	1.000	143	0%	127	55.1%	47	59.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
SCAF4	57466	genome.wustl.edu	37	21	33044292	33044292	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020706.2	-1	reviewed	p.A955V	0.400	71	0%	129	43.4%	36	41.6%	unknown(0)	tolerated(0.27)	-	NULL
SYNJ1	8867	genome.wustl.edu	37	21	34050957	34050957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003895.3	-1	validated	p.R503H	1.000	114	0%	93	47.3%	1	0%	benign(0.002)	tolerated(0.72)	neutral(0.002)	NULL
SON	6651	genome.wustl.edu	37	21	34927343	34927343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138927.1	+1	reviewed	p.R1936C	0.995	50	0%	49	49%	36	47.2%	unknown(0)	deleterious(0)	-	NULL
DSCAM	1826	genome.wustl.edu	37	21	41385099	41385099	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.A1967	0.998	59	0%	124	41.9%	0	-	-	-	-	NULL
YBEY	54059	genome.wustl.edu	37	21	47707039	47707040	+	Splice_Site	INS	-	-	AAA	rs71318058	byCluster;by1000genomes	TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058181.1	+1	validated	e1+2	1.000:0.124	-	-	-	-	-	-	-	-	-	-
ZNF74	7625	genome.wustl.edu	37	22	20759868	20759868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003426.2	+1	validated	p.R182M	0.000	24	0%	27	51.9%	15	80%	unknown(0)	-	-	NULL
MED15	51586	genome.wustl.edu	37	22	20920813	20920814	+	In_Frame_Ins	INS	-	-	CAG	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003891.1	+1	reviewed	p.254in_frame_insQ	0.993:0.998	-	-	-	-	-	-	-	-	-	NULL
HIC2	23119	genome.wustl.edu	37	22	21799356	21799356	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015094.2	+1	validated	p.R58	1.000	70	0%	64	42.2%	1	100%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
IGLV2-33	28811	genome.wustl.edu	37	22	22930946	22930946	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390302	+1	known	p.D47	0.180	373	0%	612	11.9%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
GNAZ	2781	genome.wustl.edu	37	22	23437997	23437997	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002073.2	+1	reviewed	p.L39	0.999	28	0%	48	50%	1	100%	-	-	-	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
SGSM1	129049	genome.wustl.edu	37	22	25270429	25270429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039948.2	+1	validated	p.A447T	0.982	30	0%	36	25%	0	-	possibly_damaging(0.772)	tolerated(0.33)	neutral(0.311)	NULL
TMEM211	255349	genome.wustl.edu	37	22	25331476	25331476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001663.1	-1	provisional	p.Y72H	0.172	198	0%	348	42.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_L_HGMIC_fpl
HPS4	89781	genome.wustl.edu	37	22	26849246	26849246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022081.4	-1	reviewed	p.G694S	0.548	158	0%	213	36.2%	13	61.5%	benign(0.417)	tolerated(0.42)	neutral(0.149)	NULL
DEPDC5	9681	genome.wustl.edu	37	22	32239088	32239088	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433147	+1	known	p.V239I	1.000	131	0%	176	30.7%	3	33.3%	-	-	-	NULL
APOL1	8542	genome.wustl.edu	37	22	36661562	36661562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145343.2	+1	reviewed	p.T243I	0.000	177	0%	246	38.2%	9	0%	benign(0.003)	tolerated(1)	-	HMMPfam_ApoL
MYH9	4627	genome.wustl.edu	37	22	36680170	36680170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002473.4	-1	reviewed	p.R1912C	1.000	62	0%	83	44.6%	844	40.1%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Myosin_tail_1
FOXRED2	80020	genome.wustl.edu	37	22	36886133	36886133	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102371.1	-1	validated	p.G659	0.000	66	0%	104	14.4%	36	25%	-	-	-	NULL
ELFN2	114794	genome.wustl.edu	37	22	37769879	37769879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052906.3	-1	validated	p.G566S	0.003	16	0%	17	35.3%	0	-	benign(0.001)	deleterious(0.05)	neutral(0.345)	NULL
CARD10	29775	genome.wustl.edu	37	22	37906309	37906314	+	In_Frame_Del	DEL	CTCCTT	CTCCTT	-	rs113275238	byCluster;by1000genomes	TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	CTCCTT	CTCCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014550.3	-1	reviewed	p.KE272in_frame_del	0.939:0.949:0.957:0.963:0.966:0.967	-	-	-	-	-	-	-	-	-	NULL
TRIOBP	11078	genome.wustl.edu	37	22	38165067	38165067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039141.2	+1	reviewed	p.Q2203R	1.000	38	0%	44	36.4%	63	41.2%	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	NULL
SERHL2	253190	genome.wustl.edu	37	22	42951088	42951088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014509.3	+1	provisional	p.P56L	0.982	225	0%	227	20.7%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_alpha/beta-Hydrolases
PPP6R2	9701	genome.wustl.edu	37	22	50845188	50845188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014678.3	+1	validated	p.E100K	0.992	341	0%	557	42.2%	22	45.4%	benign(0.001)	tolerated(0.09)	neutral(0.296)	NULL
SBF1	6305	genome.wustl.edu	37	22	50893150	50893150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002972.2	-1	validated	p.V1586M	1.000	19	0%	22	45.5%	18	55.5%	probably_damaging(0.953)	deleterious(0.04)	deleterious(0.746)	superfamily_(Phosphotyrosine protein) phosphatases II
ARSA	410	genome.wustl.edu	37	22	51065261	51065261	+	Splice_Site	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000487.4	-1	reviewed	e3+1	1.000	15	0%	30	50%	0	-	-	-	-	-
ENSG00000210082	0	genome.wustl.edu	37	MT	2975	2975	+	RNA	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000387347	+1	known	NULL	NULL	49	0%	18	38.9%	5257	30.3%	-	-	-	-
RBBP7	5931	genome.wustl.edu	37	X	16871856	16871856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002893.3	-1	reviewed	p.L236P	1.000	141	0%	201	38.3%	1280	98.1%	benign(0)	tolerated(0.34)	neutral(0.023)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
BEND2	139105	genome.wustl.edu	37	X	18221871	18221871	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153346.4	-1	validated	p.Q219	0.000	414	0%	568	44.9%	0	-	-	-	-	NULL
CXorf23	256643	genome.wustl.edu	37	X	19948031	19948031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198279.3	-1	validated	p.P631S	0.114	370	0%	472	10.4%	3	0%	benign(0.046)	deleterious(0)	neutral(0.447)	NULL
DMD	1756	genome.wustl.edu	37	X	32663085	32663085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.H382R	1.000	204	0%	263	42.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
BCOR	54880	genome.wustl.edu	37	X	39922133	39922133	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.L1347	1.000	34	0%	32	53.1%	33	78.7%	-	-	-	NULL
MED14	9282	genome.wustl.edu	37	X	40514262	40514262	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004229.3	-1	reviewed	p.T1341	0.999	82	0%	128	46.1%	29	96.5%	-	-	-	NULL
USP9X	8239	genome.wustl.edu	37	X	41043675	41043675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039590.2	+1	reviewed	p.A1102V	1.000	143	0%	130	13.1%	8	25%	benign(0.396)	tolerated(0.13)	neutral(0.380)	NULL
PHF16	9767	genome.wustl.edu	37	X	46898451	46898451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077445.1	+1	reviewed	p.T319M	0.998	120	0%	278	42.8%	6	100%	possibly_damaging(0.71)	tolerated(0.07)	deleterious(0.576)	HMMSmart_PHD
SSX4	6759	genome.wustl.edu	37	X	48244867	48244867	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005636.3	+1	reviewed	p.N86	0.000	247	0.4%	337	22.8%	0	-	-	-	-	NULL
TFE3	7030	genome.wustl.edu	37	X	48896769	48896769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006521.4	-1	reviewed	p.R133C	1.000	14	0%	18	38.9%	20	0%	unknown(0)	deleterious(0.01)	-	NULL
CACNA1F	778	genome.wustl.edu	37	X	49084508	49084508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005183.2	-1	reviewed	p.V370I	1.000	92	0%	101	46.5%	0	-	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CCDC22	28952	genome.wustl.edu	37	X	49099756	49099756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014008.3	+1	validated	p.R181Q	0.613	38	0%	29	62.1%	32	100%	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_DUF812
FGD1	2245	genome.wustl.edu	37	X	54492001	54492001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004463.2	-1	reviewed	p.L507M	1.000	67	0%	108	35.2%	23	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain
APEX2	27301	genome.wustl.edu	37	X	55033704	55033704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014481.2	+1	reviewed	p.R465C	0.080	36	0%	71	45.1%	180	0%	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	NULL
RRAGB	10325	genome.wustl.edu	37	X	55758004	55758004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016656.3	+1	validated	p.E195D	0.998	75	0%	88	33%	2	0%	benign(0.006)	tolerated(0.27)	neutral(0.034)	HMMPfam_Gtr1_RagA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZXDA	7789	genome.wustl.edu	37	X	57935717	57935717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007156.4	-1	reviewed	p.R380C	1.000	92	0%	96	51%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
NLGN3	54413	genome.wustl.edu	37	X	70389345	70389345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018977.3	+1	reviewed	p.P629S	1.000	56	0%	125	45.6%	1	0%	benign(0.111)	tolerated(0.06)	neutral(0.331)	NULL
TAF1	6872	genome.wustl.edu	37	X	70598178	70598178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004606.3	+1	reviewed	p.R363C	1.000	227	0%	428	39.3%	5	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UPRT	139596	genome.wustl.edu	37	X	74494097	74494097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145052.3	+1	reviewed	p.T3M	0.814	46	0%	96	36.5%	14	0%	possibly_damaging(0.898)	tolerated(0.21)	neutral(0.398)	NULL
MAGEE1	57692	genome.wustl.edu	37	X	75649760	75649760	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020932.2	+1	reviewed	p.S479	0.001	88	0%	77	40.3%	0	-	-	-	-	NULL
ATP7A	538	genome.wustl.edu	37	X	77264626	77264626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000052.4	+1	reviewed	p.V579I	1.000	490	0.4%	703	45.8%	1	100%	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	HMMPfam_HMA,superfamily_HMA heavy metal-associated domain,PatternScan_HMA_1
P2RY10	27334	genome.wustl.edu	37	X	78216615	78216615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014499.2	+1	reviewed	p.T200A	0.041	409	0%	455	42.6%	2	0%	benign(0.001)	tolerated(0.3)	neutral(0.029)	HMMPfam_7tm_1,superfamily_SSF81321
PCDH19	57526	genome.wustl.edu	37	X	99662723	99662723	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105243.1	-1	reviewed	p.I291	0.056	72	0%	55	10.9%	4	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CSTF2	1478	genome.wustl.edu	37	X	100093336	100093336	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001325.2	+1	reviewed	p.T574S	1.000	259	0%	287	21.3%	24	0%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
NOX1	27035	genome.wustl.edu	37	X	100117554	100117554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007052.4	-1	reviewed	p.E166D	0.027	345	0.3%	678	38.3%	0	-	benign(0.277)	tolerated(0.58)	neutral(0.034)	HMMPfam_Ferric_reduct
GUCY2F	2986	genome.wustl.edu	37	X	108647678	108647678	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001522.2	-1	reviewed	p.H668	1.000	327	0.3%	377	40.6%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
NXT2	55916	genome.wustl.edu	37	X	108780177	108780177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018698.3	+1	provisional	p.R36Q	0.000	42	0%	69	40.6%	11	0%	benign(0.006)	tolerated(0.32)	neutral(0.024)	NULL
RGAG1	57529	genome.wustl.edu	37	X	109695531	109695531	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020769.2	+1	validated	p.T562	0.147	651	0.2%	700	40.7%	0	-	-	-	-	NULL
HTR2C	3358	genome.wustl.edu	37	X	114141289	114141289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000868.2	+1	reviewed	p.M230V	1.000	338	0.6%	374	42.8%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_7tm_1,superfamily_SSF81321
PLS3	5358	genome.wustl.edu	37	X	114874747	114874747	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136025.3	+1	reviewed	p.N307D	1.000	269	0%	325	39.4%	22	0%	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
DOCK11	139818	genome.wustl.edu	37	X	117744326	117744326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144658.3	+1	validated	p.A1014V	0.019	197	0%	230	51.3%	1	0%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
NKRF	55922	genome.wustl.edu	37	X	118724020	118724020	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017544.3	-1	reviewed	p.N456	0.107	170	0%	226	47.3%	13	100%	-	-	-	HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
LAMP2	3920	genome.wustl.edu	37	X	119580249	119580249	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122606.1	-1	reviewed	p.T259P	0.290	300	0%	410	47.8%	271	96.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Lamp
CT47B1	643311	genome.wustl.edu	37	X	120009193	120009193	+	Missense_Mutation	SNP	G	G	A	rs191882380	by1000genomes	TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145718.1	-1	validated	p.A111V	0.000	53	0%	43	41.9%	0	-	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
ARHGAP36	158763	genome.wustl.edu	37	X	130220541	130220541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144967.3	+1	validated	p.R463H	0.012	339	0%	408	42.6%	0	-	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	NULL
MBNL3	55796	genome.wustl.edu	37	X	131540407	131540407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018388.3	-1	reviewed	p.R64Q	1.000	211	0%	254	43.7%	2	0%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_zf-CCCH,HMMSmart_SM00356
DDX26B	203522	genome.wustl.edu	37	X	134711279	134711279	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182540.4	+1	validated	p.G645	1.000	490	0.2%	841	39.4%	0	-	-	-	-	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135862955	135862957	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004840.2	-1	reviewed	p.E29in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
ZIC3	7547	genome.wustl.edu	37	X	136649449	136649449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003413.3	+1	reviewed	p.R200H	1.000	31	0%	38	39.5%	0	-	benign(0.017)	tolerated(0.16)	neutral(0.060)	NULL
ATP11C	286410	genome.wustl.edu	37	X	138857001	138857001	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173694.4	-1	validated	p.C691	0.982	389	0%	481	34.5%	8	0%	-	-	-	superfamily_HAD-like
HMGB3	3149	genome.wustl.edu	37	X	150156352	150156354	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005342.2	+1	validated	p.E193in_frame_del	0.988:0.832:0.088	-	-	-	-	-	-	-	-	-	NULL
ZNF275	10838	genome.wustl.edu	37	X	152612790	152612790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080485.2	+1	validated	p.R216Q	0.001	397	0%	570	43.7%	8	100%	benign(0.003)	tolerated(0.1)	neutral(0.286)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SRPK3	26576	genome.wustl.edu	37	X	153050905	153050905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GB-01	TCGA-A5-A0GB-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014370.3	+1	reviewed	p.M545T	1.000	20	0%	13	30.8%	16	0%	possibly_damaging(0.822)	deleterious(0)	deleterious(0.756)	superfamily_Kinase_like,HMMPfam_Pkinase
