Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
SERINC2	347735	genome.wustl.edu	37	1	31899584	31899584	+	Missense_Mutation	SNP	G	G	A	rs184672093	by1000genomes	TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178865.3	+1	validated	p.G232S	0.025	238	0%	140	22.1%	-	-	benign(0.001)	tolerated(0.37)	neutral(0.019)	HMMPfam_Serinc
UBAP2L	9898	genome.wustl.edu	37	1	154201200	154201200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014847.3	+1	validated	p.T93M	1.000	258	0%	173	28.9%	-	-	probably_damaging(0.997)	tolerated(0.08)	deleterious(0.766)	NULL
CACNA1E	777	genome.wustl.edu	37	1	181731719	181731719	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.R1539*	1.000	249	0%	109	30.3%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CEP170	9859	genome.wustl.edu	37	1	243328914	243328914	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014812.2	-1	reviewed	p.Q783R	0.180	293	0%	336	29.5%	-	-	possibly_damaging(0.575)	tolerated(0.45)	neutral(0.209)	NULL
CNST	163882	genome.wustl.edu	37	1	246797890	246797891	+	Splice_Site	INS	-	-	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152609.2	+1	validated	e5+1	1.000:1.000	-	-	-	-	-	-	-	-	-	-
OR2AK2	391191	genome.wustl.edu	37	1	248128665	248128665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004491.1	+1	provisional	p.I11T	0.000	158	0%	122	12.3%	-	-	benign(0.021)	-	-	superfamily_SSF81321
LCT	3938	genome.wustl.edu	37	2	136547198	136547198	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002299.2	-1	reviewed	p.R1836	0.095	140	0%	120	16.7%	-	-	-	-	-	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
ENSG00000253049	0	genome.wustl.edu	37	3	3144607	3144607	+	RNA	SNP	A	A	C	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000517240	+1	novel	NULL	0.000	30	0%	16	25%	-	-	-	-	-	-
TFDP2	7029	genome.wustl.edu	37	3	141712416	141712416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006286.4	-1	reviewed	p.R46Q	1.000	80	0%	89	30.3%	-	-	probably_damaging(0.986)	tolerated(0.12)	deleterious(0.695)	NULL
LOC728384	728384	genome.wustl.edu	37	4	49558181	49558181	+	Nonsense_Mutation	SNP	C	C	T	rs143588472	by1000genomes	TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344243.1	+1	model	p.Q104*	0.060	5	0.000	17	0.294	-	-	-	-	-	NULL
UGT2B15	7366	genome.wustl.edu	37	4	69535622	69535622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076.2	-1	validated	p.E239K	1.000	146	0.7%	52	42.3%	-	-	benign(0.008)	tolerated(0.13)	neutral(0.253)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
OSTC	58505	genome.wustl.edu	37	4	109578803	109578803	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021227.2	+1	validated	p.P144R	1.000	223	0%	193	10.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591154	67591154	+	Splice_Site	DEL	T	T	-	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	e12+2	1.000	-	-	-	-	-	-	-	-	-	-
PCDHA12	56137	genome.wustl.edu	37	5	140256804	140256804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018903.2	+1	reviewed	p.R583W	0.000	293	0%	91	14.3%	-	-	benign(0.054)	deleterious(0.04)	neutral(0.352)	superfamily_Cadherin-like
SYNPO	11346	genome.wustl.edu	37	5	149998029	149998029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000314840	+1	known	p.A34T	1.000	73	0%	35	34.3%	-	-	possibly_damaging(0.839)	deleterious(0)	deleterious(0.765)	NULL
RREB1	6239	genome.wustl.edu	37	6	7229956	7229956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000274670	+1	known	p.P399L	1.000	11	0%	10	60%	-	-	-	-	-	NULL
CDSN	1041	genome.wustl.edu	37	6	31084936	31084938	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001264.3	-1	reviewed	p.S153in_frame_del	0.001:0.002:0.002	-	-	-	-	-	-	-	-	-	NULL
TBX18	9096	genome.wustl.edu	37	6	85453986	85453986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080508.1	-1	provisional	p.R333C	1.000	86	0%	79	26.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_TBOX
NCOA7	135112	genome.wustl.edu	37	6	126236503	126236503	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181782.3	+1	validated	p.F707	1.000	182	0%	54	13%	-	-	-	-	-	NULL
GRM3	2913	genome.wustl.edu	37	7	86416164	86416164	+	Silent	SNP	G	G	C	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000840.2	+1	reviewed	p.R352	0.962	82	0%	65	24.6%	-	-	-	-	-	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
HTR5A	3361	genome.wustl.edu	37	7	154862972	154862972	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024012.2	+1	reviewed	p.D121	0.998	55	0%	31	45.2%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CSMD1	64478	genome.wustl.edu	37	8	2830735	2830735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.R2944C	0.996	106	0%	54	59.3%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ZFHX4	79776	genome.wustl.edu	37	8	77618597	77618597	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.P758	0.007	84	0%	44	59.1%	-	-	-	-	-	NULL
KANK1	23189	genome.wustl.edu	37	9	742271	742274	+	Frame_Shift_Del	DEL	GCCT	GCCT	-	rs183748218	by1000genomes	TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	GCCT	GCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015158.2	+1	reviewed	p.A1255fs	1.000:1.000:0.997:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ADARB2	105	genome.wustl.edu	37	10	1262895	1262895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018702.2	-1	reviewed	p.A560T	0.976	49	0%	52	36.5%	-	-	possibly_damaging(0.724)	tolerated(0.14)	deleterious(0.512)	HMMPfam_A_deamin,HMMSmart_ADEAMc
UNC5B	219699	genome.wustl.edu	37	10	73053617	73053617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170744.3	+1	validated	p.A701V	1.000	44	0%	33	39.4%	-	-	benign(0.207)	deleterious(0.01)	neutral(0.426)	NULL
PTEN	5728	genome.wustl.edu	37	10	89685292	89685293	+	Frame_Shift_Ins	INS	-	-	ACCATTAC	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.K66fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89711927	89711928	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.N184fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_(Phosphotyrosine protein) phosphatases II
CHST1	8534	genome.wustl.edu	37	11	45671664	45671664	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003654.4	-1	validated	p.T270	0.836	22	0%	23	21.7%	-	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
CAPN5	726	genome.wustl.edu	37	11	76823688	76823688	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004055.4	+1	reviewed	p.Y117	0.020	116	0%	66	31.8%	-	-	-	-	-	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
DLG2	1740	genome.wustl.edu	37	11	83243813	83243813	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142699.1	-1	reviewed	p.E711K	1.000	392	0%	97	11.3%	-	-	probably_damaging(0.995)	tolerated(0.05)	deleterious(0.803)	superfamily_SH3-domain
C1QTNF5	114902	genome.wustl.edu	37	11	119210105	119210105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015645.3	-1	reviewed	p.T223R	1.000	162	0%	95	10.5%	-	-	possibly_damaging(0.61)	deleterious(0.02)	deleterious(0.595)	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like
ARHGAP32	9743	genome.wustl.edu	37	11	128868228	128868228	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142685.1	-1	validated	p.N380fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_GTPase activation domain GAP
LRTM2	654429	genome.wustl.edu	37	12	1940350	1940350	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039029.2	+1	validated	p.R106P	0.997	75	0%	86	44.2%	-	-	benign(0.076)	tolerated(0.29)	neutral(0.035)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
OTOGL	283310	genome.wustl.edu	37	12	80714312	80714312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343203.1	+1	model	p.R1210W	0.047	206	0%	121	9.9%	-	-	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	superfamily_AbfB domain (Pfam 05270)
RPLP0	6175	genome.wustl.edu	37	12	120637257	120637257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002.3	-1	reviewed	p.I29T	1.000	94	0%	114	30.7%	-	-	benign(0.187)	deleterious(0)	neutral(0.462)	HMMPfam_Ribosomal_L10
HEATR4	399671	genome.wustl.edu	37	14	73969643	73969643	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203309.1	-1	provisional	p.A640	0.225	237	0.4%	66	56.1%	-	-	-	-	-	superfamily_ARM-type_fold
C14orf45	80127	genome.wustl.edu	37	14	74514635	74514635	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025057.2	+1	validated	p.Q217P	1.000	90	0%	97	52.6%	-	-	probably_damaging(0.978)	tolerated(0.1)	deleterious(0.707)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105408765	105408765	+	Silent	SNP	C	C	G	rs185751603	by1000genomes	TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.L4341	0.000	201	0%	126	55.6%	-	-	-	-	-	NULL
ENSG00000215407	0	genome.wustl.edu	37	15	20433918	20433918	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400226	-1	known	p.K568N	0.958	258	0%	93	29%	-	-	-	-	-	NULL
TP53	7157	genome.wustl.edu	37	17	7579559	7579559	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.L43fs	0.010	-	-	-	-	-	-	-	-	-	NULL
KCNH4	23415	genome.wustl.edu	37	17	40321521	40321521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012285.2	-1	reviewed	p.V522I	1.000	56	0%	20	55%	-	-	possibly_damaging(0.564)	tolerated(0.22)	neutral(0.235)	superfamily_cNMP_binding
DDX42	11325	genome.wustl.edu	37	17	61864579	61864579	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007372.2	+1	reviewed	p.P57R	1.000	255	0%	108	19.4%	-	-	possibly_damaging(0.898)	tolerated(0.14)	deleterious(0.604)	NULL
TIMP2	7077	genome.wustl.edu	37	17	76853712	76853712	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003255.4	-1	reviewed	p.D119	0.594	108	0.9%	101	66.3%	-	-	-	-	-	HMMPfam_TIMP,HMMSmart_NTR,superfamily_TIMP_like
TJP3	27134	genome.wustl.edu	37	19	3739072	3739072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014428.1	+1	provisional	p.A557V	0.994	21	0%	21	19%	-	-	probably_damaging(0.998)	tolerated(0.19)	deleterious(0.524)	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2
DPP9	91039	genome.wustl.edu	37	19	4684758	4684758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139159.4	-1	reviewed	p.L699V	1.000	160	0%	109	11%	-	-	possibly_damaging(0.95)	tolerated(0.27)	neutral(0.427)	HMMPfam_Peptidase_S9,superfamily_SSF53474
GGN	199720	genome.wustl.edu	37	19	38877250	38877250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152657.3	-1	reviewed	p.G218R	0.008	21	0%	18	38.9%	-	-	benign(0.104)	deleterious(0.02)	neutral(0.391)	NULL
CEACAM7	1087	genome.wustl.edu	37	19	42181360	42181360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006890.3	-1	provisional	p.A260T	0.803	366	0%	181	21.5%	-	-	possibly_damaging(0.947)	tolerated(0.08)	deleterious(0.691)	NULL
RSPH6A	81492	genome.wustl.edu	37	19	46318101	46318101	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030785.3	-1	reviewed	p.A112P	0.000	60	0%	65	35.4%	-	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
GYS1	2997	genome.wustl.edu	37	19	49481246	49481246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002103.4	-1	reviewed	p.D415N	1.000	197	1.5%	110	39.1%	-	-	benign(0.266)	tolerated(0.18)	neutral(0.084)	HMMPfam_Glycogen_syn
RPL13A	23521	genome.wustl.edu	37	19	49993146	49993146	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012423.2	+1	reviewed	p.L19	1.000	150	0%	171	31%	-	-	-	-	-	HMMPfam_Ribosomal_L13,superfamily_Ribosomal_L13
C20orf132	140699	genome.wustl.edu	37	20	35807790	35807791	+	Frame_Shift_Ins	INS	-	-	CTTATAGACAGGGCCCCGCGGCCGGCACT	rs11467214		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400441	-1	known	p.H31fs	1.000:0.052	-	-	-	-	-	-	-	-	-	NULL
C21orf62	56245	genome.wustl.edu	37	21	34166478	34166478	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000479548	-1	known	p.T85	0.027	154	0%	40	40%	-	-	-	-	-	NULL
ERAS	3266	genome.wustl.edu	37	X	48687738	48687738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181532.2	+1	provisional	p.D69N	0.948	73	0%	33	30.3%	-	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMSmart_RAS,HMMPfam_Ras,superfamily_SSF52540
MED12	9968	genome.wustl.edu	37	X	70338669	70338669	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005120.2	+1	reviewed	p.P22R	1.000	35	0%	34	32.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CTAG2	30848	genome.wustl.edu	37	X	153880708	153880708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0R7-01	TCGA-A5-A0R7-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020994.3	-1	reviewed	p.G156E	0.000	179	0%	191	47.1%	-	-	unknown(0)	deleterious(0)	-	NULL
