Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
SLC9A1	6548	genome.wustl.edu	37	1	27427750	27427750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003047.3	-1	validated	p.T685M	1.000	35	2.9%	30	53.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
THRAP3	9967	genome.wustl.edu	37	1	36759510	36759510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005119.3	+1	validated	p.K697E	1.000	68	0%	98	67.3%	-	-	probably_damaging(0.962)	tolerated(0.24)	neutral(0.443)	NULL
LRRC41	10489	genome.wustl.edu	37	1	46745931	46745931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006369.4	-1	validated	p.F651L	1.000	41	0%	79	26.6%	-	-	benign(0.195)	deleterious(0)	neutral(0.463)	superfamily_RNI-like
LOC100288209	100288209	genome.wustl.edu	37	1	55331027	55331027	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342084.1	+1	model	p.G236R	0.881	112	0%	118	25.4%	-	-	-	-	-	NULL
COL11A1	1301	genome.wustl.edu	37	1	103345292	103345292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080629.2	-1	reviewed	p.E1753K	1.000	84	0%	90	25.6%	-	-	unknown(0)	deleterious(0)	-	HMMPfam_COLFI,HMMSmart_COLFI
COL11A1	1301	genome.wustl.edu	37	1	103488498	103488498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080629.2	-1	reviewed	p.D361N	1.000	86	0%	76	22.4%	-	-	unknown(0)	tolerated(0.55)	-	NULL
TRIM46	80128	genome.wustl.edu	37	1	155152380	155152380	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025058.3	+1	validated	p.D520H	0.998	12	0%	34	20.6%	-	-	possibly_damaging(0.803)	deleterious(0.04)	deleterious(0.651)	superfamily_Fibronectin type III
KIRREL	55243	genome.wustl.edu	37	1	158058237	158058237	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018240.5	+1	validated	p.S346*	1.000	45	0%	51	17.6%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
METTL11B	149281	genome.wustl.edu	37	1	170136781	170136781	+	Silent	SNP	C	C	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136107.1	+1	validated	p.L245	0.510	30	0%	44	22.7%	-	-	-	-	-	HMMPfam_DUF858,superfamily_SSF53335
KIAA1614	57710	genome.wustl.edu	37	1	180904388	180904388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020950.1	+1	validated	p.S448L	0.966	5	0.000	10	0.700	-	-	possibly_damaging(0.946)	deleterious(0.01)	deleterious(0.796)	NULL
EDEM3	80267	genome.wustl.edu	37	1	184677468	184677468	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025191.3	-1	validated	p.S619*	1.000	44	2.3%	45	22.2%	-	-	-	-	-	NULL
F13B	2165	genome.wustl.edu	37	1	197026245	197026245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001994.2	-1	reviewed	p.G357R	0.993	62	0%	100	10%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
IPO9	55705	genome.wustl.edu	37	1	201835979	201835979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018085.4	+1	validated	p.V583M	1.000	78	0%	61	37.7%	-	-	probably_damaging(0.968)	deleterious(0.02)	deleterious(0.793)	superfamily_ARM repeat
COLEC11	78989	genome.wustl.edu	37	2	3660907	3660907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024027.3	+1	validated	p.A46V	0.909	28	0%	45	44.4%	-	-	benign(0.022)	tolerated(0.3)	neutral(0.030)	NULL
NRXN1	9378	genome.wustl.edu	37	2	50280437	50280437	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135659.1	-1	reviewed	p.K1407M	1.000	75	0%	97	18.6%	-	-	benign(0.355)	deleterious(0)	deleterious(0.557)	NULL
C2orf81	388963	genome.wustl.edu	37	2	74642401	74642401	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145054.1	-1	predicted	p.E274D	0.003	11	0%	30	40%	-	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
POLE4	56655	genome.wustl.edu	37	2	75187231	75187231	+	Splice_Site	SNP	G	G	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019896.2	+1	validated	e3-1	1.000	146	0%	181	42.5%	-	-	-	-	-	-
BCL2L11	10018	genome.wustl.edu	37	2	111921771	111921772	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138621.3	+1	reviewed	p.R188fs	0.997:0.928	-	-	-	-	-	-	-	-	-	NULL
ZC3H6	376940	genome.wustl.edu	37	2	113089767	113089767	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198581.2	+1	validated	p.G1091A	0.871	31	0%	52	15.4%	-	-	benign(0.183)	tolerated(0.31)	neutral(0.044)	NULL
PDE1A	5136	genome.wustl.edu	37	2	183011836	183011836	+	Silent	SNP	A	A	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005019.3	-1	validated	p.A536	0.781	188	0%	201	21.9%	-	-	-	-	-	NULL
DNAH7	56171	genome.wustl.edu	37	2	196737178	196737178	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.D2143E	0.007	37	0%	61	16.4%	-	-	benign(0)	tolerated(0.98)	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ENSG00000247626	0	genome.wustl.edu	37	2	198572076	198572077	+	RNA	INS	-	-	TTC	rs34688524	byCluster;by1000genomes	TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000499940	-1	novel	NULL	0.000:0.000	-	-	-	-	-	-	-	-	-	-
PDCD1	5133	genome.wustl.edu	37	2	242795082	242795082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005018.2	-1	reviewed	p.V43M	0.000	43	0%	50	54%	-	-	benign(0.006)	tolerated(0.1)	neutral(0.286)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SATB1	6304	genome.wustl.edu	37	3	18393678	18393678	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131010.1	-1	validated	p.C529G	1.000	37	0%	21	19%	-	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	HMMPfam_CUT
SCN10A	6336	genome.wustl.edu	37	3	38833561	38833561	+	Silent	SNP	G	G	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006514.2	-1	validated	p.A123	1.000	45	0%	48	10.4%	-	-	-	-	-	superfamily_SSF81324
CADPS	8618	genome.wustl.edu	37	3	62503879	62503879	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003716.3	-1	reviewed	p.E780Q	1.000	101	0%	74	20.3%	-	-	probably_damaging(0.996)	tolerated(0.69)	neutral(0.464)	NULL
A4GNT	51146	genome.wustl.edu	37	3	137843367	137843367	+	Silent	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016161.2	-1	reviewed	p.F254	0.962	45	0%	70	25.7%	-	-	-	-	-	HMMPfam_Gb3_synth
A4GNT	51146	genome.wustl.edu	37	3	137843368	137843368	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016161.2	-1	reviewed	p.F254Y	1.000	47	0%	71	22.5%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Gb3_synth
SLC25A36	55186	genome.wustl.edu	37	3	140695226	140695226	+	Silent	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104647.1	+1	validated	p.V289	1.000	84	0%	161	11.2%	-	-	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
SHOX2	6474	genome.wustl.edu	37	3	157815966	157815966	+	Silent	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006884.3	-1	reviewed	p.F282	1.000	31	0%	87	19.5%	-	-	probably_damaging(0.999)	tolerated(0.19)	deleterious(0.540)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164906858	164906858	+	Silent	SNP	A	A	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014926.2	-1	validated	p.G587	0.020	45	0%	73	16.4%	-	-	-	-	-	HMMSmart_LRRCT,superfamily_SSF52058
SERPINI1	5274	genome.wustl.edu	37	3	167507134	167507134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122752.1	+1	reviewed	p.R73H	1.000	58	0%	74	35.1%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
PIK3CA	5290	genome.wustl.edu	37	3	178952030	178952030	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.D1029H	1.000	38	0%	102	20.6%	-	-	benign(0.199)	tolerated(0.07)	neutral(0.338)	HMMSmart_PI3Kc,superfamily_Kinase_like
LOC100287782	100287782	genome.wustl.edu	37	4	99877753	99877755	+	In_Frame_Del	DEL	AAA	AAA	-	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342458.1	+1	model	p.K79in_frame_del	0.064:0.068:0.071	-	-	-	-	-	-	-	-	-	NULL
TET2	54790	genome.wustl.edu	37	4	106157436	106157436	+	Silent	SNP	T	T	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127208.1	+1	validated	p.T779	0.164	34	0%	22	50%	-	-	-	-	-	NULL
SLC6A3	6531	genome.wustl.edu	37	5	1411433	1411433	+	Silent	SNP	G	G	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044.4	-1	reviewed	p.I398	0.918	20	0%	19	52.6%	-	-	-	-	-	HMMPfam_SNF
PIK3R1	5295	genome.wustl.edu	37	5	67589168	67589168	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.R386*	1.000	49	0%	92	64.1%	-	-	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
CHD1	1105	genome.wustl.edu	37	5	98204273	98204273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001270.2	-1	reviewed	p.H1392Y	1.000	109	0%	98	33.7%	-	-	benign(0.068)	deleterious(0.01)	neutral(0.410)	NULL
PRPF4B	8899	genome.wustl.edu	37	6	4049306	4049306	+	Silent	SNP	C	C	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003913.4	+1	reviewed	p.L664	1.000	60	0%	96	28.1%	-	-	-	-	-	NULL
ELOVL2	54898	genome.wustl.edu	37	6	10989938	10989938	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017770.3	-1	validated	p.Q255E	1.000	38	0%	43	18.6%	-	-	possibly_damaging(0.568)	deleterious(0.01)	deleterious(0.600)	HMMPfam_ELO
MAS1L	116511	genome.wustl.edu	37	6	29454784	29454784	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052967.1	-1	provisional	p.I299S	0.000	23	0%	40	52.5%	-	-	benign(0.019)	tolerated(0.76)	neutral(0.002)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ITPR3	3710	genome.wustl.edu	37	6	33660630	33660630	+	Silent	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002224.2	+1	validated	p.Q2528	1.000	76	0%	125	20%	-	-	-	-	-	NULL
EYS	346007	genome.wustl.edu	37	6	65300140	65300140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	p.A1874S	0.000	47	0%	83	20.5%	-	-	possibly_damaging(0.753)	-	-	superfamily_Concanavalin A-like lectins/glucanases
NDUFAF4	29078	genome.wustl.edu	37	6	97339248	97339248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014165.3	-1	reviewed	p.C87Y	0.000	46	0%	74	35.1%	-	-	benign(0.03)	tolerated(0.17)	neutral(0.060)	HMMPfam_UPF0240
MCHR2	84539	genome.wustl.edu	37	6	100368978	100368978	+	Silent	SNP	A	A	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040179.1	-1	validated	p.G287	0.918	79	0%	127	13.4%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CEP57L1	285753	genome.wustl.edu	37	6	109475077	109475077	+	Silent	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083535.1	+1	validated	p.L168	0.571	35	0%	56	25%	-	-	-	-	-	HMMPfam_DUF1167
CEP57L1	285753	genome.wustl.edu	37	6	109481786	109481786	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083535.1	+1	validated	p.E343V	1.000	22	0%	45	26.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF1167
MICAL1	64780	genome.wustl.edu	37	6	109770546	109770546	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000368957	-1	known	p.Q10L	0.000	54	0%	91	11%	-	-	unknown(0)	deleterious(0.02)	-	NULL
AIG1	51390	genome.wustl.edu	37	6	143382168	143382168	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016108.2	+1	validated	p.G36*	1.000	33	0%	33	12.1%	-	-	-	-	-	HMMPfam_Far-17a_AIG1
C6orf97	80129	genome.wustl.edu	37	6	151869514	151869514	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025059.3	+1	validated	p.E222Q	1.000	38	0%	60	13.3%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
FAM120B	84498	genome.wustl.edu	37	6	170657283	170657283	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032448.1	+1	provisional	p.E688Q	0.135	37	0%	53	18.9%	-	-	benign(0.139)	tolerated(0.16)	neutral(0.071)	NULL
ABCA13	154664	genome.wustl.edu	37	7	48312404	48312404	+	Silent	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.F1047	0.002	49	0%	27	29.6%	-	-	-	-	-	NULL
SUMF2	25870	genome.wustl.edu	37	7	56142373	56142373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130069.1	+1	reviewed	p.G179V	1.000	27	0%	30	23.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF323,superfamily_C-type lectin-like
ABCB1	5243	genome.wustl.edu	37	7	87175214	87175214	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000927.3	-1	reviewed	p.E618Q	0.047	44	0%	85	24.7%	-	-	benign(0)	tolerated(0.29)	neutral(0.029)	superfamily_P-loop containing nucleoside triphosphate hydrolases
MUC17	140453	genome.wustl.edu	37	7	100693797	100693797	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040105.1	+1	provisional	p.L4252R	0.160	85	0%	155	48.4%	-	-	unknown(0)	-	-	HMMPfam_SEA,HMMSmart_SM00200,superfamily_SEA domain
CFTR	1080	genome.wustl.edu	37	7	117251833	117251833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000492.3	+1	reviewed	p.A1113V	0.997	65	1.5%	43	32.6%	-	-	benign(0)	tolerated(1)	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
MKRN1	23608	genome.wustl.edu	37	7	140171699	140171699	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013446.3	-1	validated	p.Y100fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger
MGAM	8972	genome.wustl.edu	37	7	141786519	141786520	+	Splice_Site	INS	-	-	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000475668	+1	known	e56+2	1.000:0.986	-	-	-	-	-	-	-	-	-	-
MYOM2	9172	genome.wustl.edu	37	8	2071148	2071148	+	Silent	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003970.2	+1	validated	p.T1159	0.002	43	0%	35	25.7%	-	-	-	-	-	HMMPfam_ig,superfamily_SSF48726
ENSG00000215179	0	genome.wustl.edu	37	8	47885929	47885929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399732	-1	known	p.A102S	1.000	30	0%	37	18.9%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CNBD1	168975	genome.wustl.edu	37	8	88296921	88296921	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173538.2	+1	provisional	p.T263S	0.685	53	0%	73	21.9%	-	-	probably_damaging(0.991)	tolerated(0.49)	neutral(0.455)	superfamily_cNMP_binding
CSMD3	114788	genome.wustl.edu	37	8	113308194	113308194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.V2828F	1.000	56	1.8%	58	48.3%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ENSG00000247396	0	genome.wustl.edu	37	8	143744423	143744426	+	RNA	DEL	AGGT	AGGT	-	rs67286341	byCluster;by1000genomes	TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	AGGT	AGGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501891	+1	known	NULL	0.002:0.001:0.000:0.000	-	-	-	-	-	-	-	-	-	-
RANBP6	26953	genome.wustl.edu	37	9	6015454	6015454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012416.2	-1	validated	p.F52L	0.999	35	0%	55	43.6%	-	-	benign(0)	tolerated(1)	-	superfamily_ARM-type_fold
NCBP1	4686	genome.wustl.edu	37	9	100405549	100405549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002486.4	+1	reviewed	p.R96S	0.996	89	0%	68	50%	-	-	benign(0.213)	deleterious(0)	neutral(0.466)	HMMPfam_MIF4G,HMMSmart_MIF4G,superfamily_ARM-type_fold
GATA3	2625	genome.wustl.edu	37	10	8100514	8100514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002295.1	+1	reviewed	p.P163L	1.000	9	0.000	13	0.308	-	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	NULL
MYO3A	53904	genome.wustl.edu	37	10	26443722	26443722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017433.4	+1	reviewed	p.M921I	1.000	62	0%	85	21.2%	-	-	benign(0.114)	tolerated(0.16)	neutral(0.068)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
USP54	159195	genome.wustl.edu	37	10	75299314	75299314	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152586.3	-1	provisional	p.S288C	1.000	60	0%	65	35.4%	-	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Cysteine proteinases
KCNMA1	3778	genome.wustl.edu	37	10	78709029	78709029	+	Silent	SNP	C	C	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000372403	-1	known	p.W753L	1.000	41	0%	39	48.7%	-	-	-	-	-	NULL
FAM190B	54462	genome.wustl.edu	37	10	86185535	86185535	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018999.2	+1	validated	p.R585P	0.993	83	0%	57	15.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C10orf28	27291	genome.wustl.edu	37	10	99968654	99968654	+	Silent	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014472.4	+1	validated	p.S261	0.003	57	0%	72	19.4%	-	-	-	-	-	NULL
API5	8539	genome.wustl.edu	37	11	43357459	43357459	+	Silent	SNP	T	T	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142930.1	+1	validated	p.S469	0.784	71	0%	90	32.2%	-	-	-	-	-	HMMPfam_API5,superfamily_ARM-type_fold
OR5D18	219438	genome.wustl.edu	37	11	55587273	55587273	+	Silent	SNP	G	G	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001952.1	+1	provisional	p.L56	0.275	126	0%	152	22.4%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
NRXN2	9379	genome.wustl.edu	37	11	64428459	64428459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015080.2	-1	reviewed	p.R651W	0.320	12	0%	21	28.6%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
ARHGEF17	9828	genome.wustl.edu	37	11	73020375	73020376	+	In_Frame_Ins	INS	-	-	CTC	rs79815384		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014786.3	+1	validated	p.235in_frame_insS	0.998:1.000	-	-	-	-	-	-	-	-	-	NULL
PGM2L1	283209	genome.wustl.edu	37	11	74058192	74058192	+	Splice_Site	SNP	C	C	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173582.3	-1	validated	e7+1	1.000	44	2.3%	65	30.8%	-	-	-	-	-	-
PICALM	8301	genome.wustl.edu	37	11	85701336	85701336	+	Silent	SNP	T	T	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007166.2	-1	validated	p.V455	1.000	72	0%	67	22.4%	-	-	-	-	-	NULL
RNF214	257160	genome.wustl.edu	37	11	117153160	117153160	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077239.1	+1	validated	p.R585G	1.000	89	0%	103	30.1%	-	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
ABCG4	64137	genome.wustl.edu	37	11	119027126	119027126	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142505.1	+1	reviewed	p.H258Q	1.000	25	0%	45	24.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
BSX	390259	genome.wustl.edu	37	11	122852120	122852120	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098169.1	-1	validated	p.S87*	1.000	35	0%	36	25%	-	-	-	-	-	NULL
ACSM4	341392	genome.wustl.edu	37	12	7475888	7475888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080454.1	+1	provisional	p.G395E	0.960	41	0%	55	14.5%	-	-	benign(0.102)	deleterious(0.01)	neutral(0.414)	HMMPfam_AMP-binding,superfamily_SSF56801
KRT71	112802	genome.wustl.edu	37	12	52940176	52940176	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033448.2	-1	reviewed	p.E407Q	1.000	40	0%	72	13.9%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_Filament
ESYT1	23344	genome.wustl.edu	37	12	56522418	56522418	+	Silent	SNP	G	G	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015292.2	+1	validated	p.A105	1.000	70	0%	167	18.6%	-	-	-	-	-	NULL
KIF5A	3798	genome.wustl.edu	37	12	57957944	57957944	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004984.2	+1	reviewed	p.D115E	1.000	37	0%	50	16%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
FGD6	55785	genome.wustl.edu	37	12	95603360	95603360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018351.3	-1	validated	p.W567L	1.000	28	0%	30	20%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM132D	121256	genome.wustl.edu	37	12	129559256	129559256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133448.2	-1	validated	p.V822F	0.000	116	0%	119	10.9%	-	-	benign(0)	tolerated(0.71)	neutral(0.002)	NULL
OR4K1	79544	genome.wustl.edu	37	14	20404069	20404069	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004063.2	+1	validated	p.V83fs	0.978	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000197358	0	genome.wustl.edu	37	14	28734134	28734134	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000355069	+1	known	p.K125N	1.000	75	0%	65	30.8%	-	-	-	-	-	HMMPfam_BNIP3
IGHV4-28	28400	genome.wustl.edu	37	14	106780546	106780546	+	Silent	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390612	-1	known	p.T106	0.005	98	0%	83	79.5%	-	-	-	-	-	HMMSmart_IGv,HMMPfam_V-set,superfamily_SSF48726
INO80	54617	genome.wustl.edu	37	15	41388499	41388499	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017553.1	-1	reviewed	p.E4Q	1.000	32	0%	44	27.3%	-	-	benign(0.037)	tolerated(0.24)	neutral(0.040)	NULL
MGA	23269	genome.wustl.edu	37	15	42052641	42052641	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.E2487*	1.000	67	0%	48	31.2%	-	-	-	-	-	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
CASC4	113201	genome.wustl.edu	37	15	44671917	44671917	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138423.2	+1	reviewed	p.Q278E	0.999	78	0%	58	46.6%	-	-	benign(0.001)	tolerated(0.86)	neutral(0.001)	NULL
CILP	8483	genome.wustl.edu	37	15	65496643	65496643	+	Silent	SNP	C	C	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003613.3	-1	reviewed	p.L294	0.026	52	0%	53	34%	-	-	-	-	-	NULL
HEXA	3073	genome.wustl.edu	37	15	72668071	72668071	+	Silent	SNP	A	A	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000520.4	-1	reviewed	p.P81	0.000	11	0%	30	26.7%	-	-	-	-	-	HMMPfam_Glyco_hydro_20b,superfamily_beta-N-acetylhexosaminidase-like domain
LOC81691	81691	genome.wustl.edu	37	16	20818409	20818409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030941.2	+1	validated	p.A45D	0.350	19	0%	22	40.9%	-	-	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	NULL
KIAA0556	23247	genome.wustl.edu	37	16	27751970	27751970	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015202.2	+1	validated	p.W784C	0.000	20	0%	16	43.8%	-	-	possibly_damaging(0.7)	tolerated(0.06)	deleterious(0.574)	NULL
DPEP3	64180	genome.wustl.edu	37	16	68012239	68012239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022357.3	-1	reviewed	p.S231F	0.998	42	0%	36	44.4%	-	-	possibly_damaging(0.95)	deleterious(0)	deleterious(0.838)	PatternScan_RENAL_DIPEPTIDASE_1,HMMPfam_Peptidase_M19,superfamily_Metallo-dependent hydrolases
CD68	968	genome.wustl.edu	37	17	7483303	7483303	+	Silent	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001251.2	+1	reviewed	p.T75	0.000	248	0.4%	221	14.5%	-	-	-	-	-	HMMPfam_Lamp
TP53	7157	genome.wustl.edu	37	17	7577107	7577108	+	In_Frame_Ins	INS	-	-	CAG	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.278in_frame_insC	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_p53-like transcription factors,HMMPfam_P53
ZNF286A	57335	genome.wustl.edu	37	17	15620117	15620117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130842.1	+1	validated	p.D360G	0.986	70	0%	71	28.2%	-	-	possibly_damaging(0.94)	tolerated(1)	neutral(0.385)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
WSB1	26118	genome.wustl.edu	37	17	25639260	25639260	+	Silent	SNP	T	T	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015626.8	+1	reviewed	p.F377	1.000	45	0%	55	20%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ENSG00000174093	0	genome.wustl.edu	37	17	36361714	36361715	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000312412	-1	known	p.R210fs	1.000:0.999	-	-	-	-	-	-	-	-	-	HMMPfam_Peptidase_M1,superfamily_Leukotriene A4 hydrolase N-terminal domain
KAT2A	2648	genome.wustl.edu	37	17	40266089	40266089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021078.2	-1	validated	p.A750V	1.000	28	0%	28	89.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,PatternScan_BROMODOMAIN_1
MLX	6945	genome.wustl.edu	37	17	40723571	40723571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170607.2	+1	reviewed	p.R283W	0.697	64	1.6%	63	31.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Bet v1-like
RNF43	54894	genome.wustl.edu	37	17	56440645	56440645	+	Silent	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017763.4	-1	validated	p.P191	1.000	84	0%	60	25%	-	-	-	-	-	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14842916	14842916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145029.1	+1	validated	p.H915Y	0.001	328	0%	310	12.3%	-	-	benign(0.149)	tolerated(0.14)	neutral(0.263)	NULL
FBXO15	201456	genome.wustl.edu	37	18	71803101	71803101	+	Silent	SNP	T	T	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142958.1	-1	reviewed	p.G76	0.812	33	0%	56	32.1%	-	-	-	-	-	HMMPfam_F-box,superfamily_SSF81383
CACNA1A	773	genome.wustl.edu	37	19	13365977	13365977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127222.1	-1	reviewed	p.V1563M	1.000	70	0%	75	49.3%	-	-	benign(0.425)	deleterious(0.02)	deleterious(0.521)	superfamily_Voltage-gated potassium channels
LOC400682	400682	genome.wustl.edu	37	19	21838338	21838338	+	Silent	SNP	A	A	G	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726878.1	+1	model	p.E21	0.111	45	0%	48	14.6%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ARHGAP35	2909	genome.wustl.edu	37	19	47424909	47424910	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.Y993fs	0.934:0.912	-	-	-	-	-	-	-	-	-	NULL
TMEM86B	255043	genome.wustl.edu	37	19	55738885	55738885	+	Silent	SNP	G	G	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173804.4	-1	validated	p.F115	0.139	18	0%	13	61.5%	-	-	-	-	-	HMMPfam_YhhN
C20orf118	140711	genome.wustl.edu	37	20	35517720	35517720	+	Silent	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080628.1	+1	predicted	p.F193	1.000	23	0%	36	33.3%	-	-	-	-	-	HMMPfam_TLD,HMMSmart_TLDc
PRPF6	24148	genome.wustl.edu	37	20	62659905	62659905	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012469.3	+1	reviewed	p.Q805P	1.000	26	0%	42	16.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_HAT,superfamily_SSF48452
ATP6V1E1	529	genome.wustl.edu	37	22	18095626	18095626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001696.3	-1	reviewed	p.M76I	1.000	65	0%	116	13.8%	-	-	benign(0.017)	deleterious(0.03)	neutral(0.365)	HMMPfam_vATP-synt_E
ENSG00000212884	0	genome.wustl.edu	37	GL000205.1	117769	117769	+	Silent	SNP	C	C	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000391571	+1	known	p.R134	NULL	34	0%	33	24.2%	-	-	-	-	-	NULL
PLP2	5355	genome.wustl.edu	37	X	49031029	49031029	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002668.2	+1	reviewed	p.D149H	1.000	179	0%	208	23.6%	-	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
FGD1	2245	genome.wustl.edu	37	X	54496764	54496764	+	Silent	SNP	G	G	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004463.2	-1	reviewed	p.S262	0.995	38	0%	54	42.6%	-	-	-	-	-	NULL
GNL3L	54552	genome.wustl.edu	37	X	54574747	54574747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019067.5	+1	reviewed	p.V239A	0.974	64	0%	87	20.7%	-	-	possibly_damaging(0.624)	deleterious(0.01)	deleterious(0.623)	superfamily_SSF52540
TSPAN6	7105	genome.wustl.edu	37	X	99890695	99890695	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003270.2	-1	reviewed	p.L46V	1.000	33	0%	46	37%	-	-	possibly_damaging(0.521)	deleterious(0.02)	deleterious(0.558)	HMMPfam_Tetraspannin
ARMCX3	51566	genome.wustl.edu	37	X	100880268	100880268	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016607.3	+1	reviewed	p.A101fs	0.049	-	-	-	-	-	-	-	-	-	superfamily_ARM-type_fold
GPRASP1	9737	genome.wustl.edu	37	X	101911725	101911725	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099410.1	+1	reviewed	p.E962Q	0.893	72	0%	119	26.1%	-	-	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	NULL
TMEM164	84187	genome.wustl.edu	37	X	109247077	109247077	+	Silent	SNP	G	G	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032227.3	+1	validated	p.G25	1.000	29	0%	47	14.9%	-	-	-	-	-	NULL
LUZP4	51213	genome.wustl.edu	37	X	114541134	114541134	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016383.3	+1	validated	p.G236A	0.000	64	1.6%	98	38.8%	-	-	benign(0.05)	tolerated(0.15)	neutral(0.244)	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135757256	135757256	+	Splice_Site	SNP	C	C	A	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004840.2	-1	reviewed	e19-1	1.000	70	0%	88	28.4%	-	-	-	-	-	-
ARHGAP4	393	genome.wustl.edu	37	X	153187214	153187214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AJ-A23M-01	TCGA-AJ-A23M-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001666.4	-1	reviewed	p.G39D	0.930	7	0.000	13	0.308	-	-	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	HMMPfam_FCH,HMMSmart_FCH
