Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
GNB1	2782	genome.wustl.edu	37	1	1735936	1735936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002074.2	-1	reviewed	p.D118Y	1.000	66	0%	72	37.5%	68	35.2%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CHD5	26038	genome.wustl.edu	37	1	6186791	6186791	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015557.1	-1	provisional	p.E1307fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DUF1087
CAMTA1	23261	genome.wustl.edu	37	1	7725036	7725036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015215.1	+1	validated	p.A810V	1.000	23	0%	32	43.8%	0	-	benign(0.039)	deleterious(0.05)	neutral(0.347)	NULL
CLSTN1	22883	genome.wustl.edu	37	1	9804553	9804553	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009566.1	-1	validated	p.V378	0.032	33	0%	49	34.7%	12	41.6%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
KIF1B	23095	genome.wustl.edu	37	1	10380147	10380147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015074.3	+1	reviewed	p.R675Q	0.503	144	0%	149	34.9%	0	-	benign(0.009)	tolerated(0.66)	neutral(0.003)	NULL
CASZ1	54897	genome.wustl.edu	37	1	10706283	10706283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079843.1	-1	validated	p.E1200K	1.000	11	0%	15	40%	2	0%	probably_damaging(0.995)	tolerated(0.13)	deleterious(0.710)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
SPATA21	374955	genome.wustl.edu	37	1	16748433	16748433	+	Missense_Mutation	SNP	G	G	A	rs149847071	by1000genomes	TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198546.1	-1	provisional	p.T23M	0.000	186	0%	212	23.6%	0	-	benign(0.001)	tolerated(0.19)	neutral(0.050)	NULL
UBR4	23352	genome.wustl.edu	37	1	19523661	19523661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.V331A	1.000	137	0%	123	20.3%	0	-	possibly_damaging(0.639)	tolerated(0.29)	neutral(0.253)	NULL
KIF17	57576	genome.wustl.edu	37	1	21011475	21011475	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020816.2	-1	validated	p.V686	0.000	13	0%	10	40%	1	0%	-	-	-	NULL
CDC42	998	genome.wustl.edu	37	1	22413170	22413170	+	Silent	SNP	T	T	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039802.1	+1	reviewed	p.P99	1.000	447	0.2%	498	36.7%	97	39.1%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
EPHA8	2046	genome.wustl.edu	37	1	22902803	22902803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020526.3	+1	reviewed	p.R85C	1.000	18	0%	41	29.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
KDM1A	23028	genome.wustl.edu	37	1	23409810	23409810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015013.3	+1	reviewed	p.R838C	1.000	79	0%	82	34.1%	73	38.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
EIF2C4	192670	genome.wustl.edu	37	1	36282513	36282513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017629.2	+1	reviewed	p.R17H	1.000	210	0%	190	20%	1	100%	possibly_damaging(0.861)	tolerated(0.09)	deleterious(0.629)	NULL
EIF2C3	192669	genome.wustl.edu	37	1	36439007	36439007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024852.2	+1	reviewed	p.A185T	1.000	237	0%	263	36.5%	2	100%	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_DUF1785
EPHA10	284656	genome.wustl.edu	37	1	38227332	38227332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099439.1	-1	validated	p.V199M	1.000	29	0%	35	34.3%	0	-	probably_damaging(0.997)	tolerated(0.96)	neutral(0.466)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,superfamily_Galactose-binding domain-like
PPT1	5538	genome.wustl.edu	37	1	40539825	40539825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000310.3	-1	reviewed	p.A277T	0.971	327	0%	283	35.7%	24	25%	possibly_damaging(0.439)	tolerated(0.1)	neutral(0.429)	HMMPfam_Palm_thioest,superfamily_alpha/beta-Hydrolases
MUTYH	4595	genome.wustl.edu	37	1	45799269	45799269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128425.1	-1	reviewed	p.A55V	0.003	31	0%	53	24.5%	0	-	benign(0.083)	tolerated(0.17)	neutral(0.065)	NULL
ACOT11	26027	genome.wustl.edu	37	1	55064992	55064992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015547.2	+1	reviewed	p.T263M	0.999	57	0%	58	29.3%	1	100%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_4HBT,superfamily_Thioesterase/thiol ester dehydrase-isomerase
C1orf168	199920	genome.wustl.edu	37	1	57206385	57206385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004303.4	-1	validated	p.S563L	0.175	126	0%	185	36.2%	4	0%	benign(0.001)	tolerated(0.41)	neutral(0.015)	NULL
RABGGTB	5876	genome.wustl.edu	37	1	76255030	76255030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004582.2	+1	provisional	p.S100G	0.998	139	0%	151	35.1%	11	45.4%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Prenyltrans,superfamily_Terpenoid cyclases/Protein prenyltransferases
ZNF644	84146	genome.wustl.edu	37	1	91406436	91406436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201269.1	-1	validated	p.A159T	0.984	266	0%	187	37.4%	1	100%	benign(0.028)	deleterious(0.04)	neutral(0.350)	NULL
ABCA4	24	genome.wustl.edu	37	1	94568582	94568582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000350.2	-1	reviewed	p.R187C	1.000	362	0%	445	29%	0	-	probably_damaging(0.982)	tolerated(0.11)	deleterious(0.698)	NULL
CCDC76	54482	genome.wustl.edu	37	1	100613729	100613729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019083.2	+1	validated	p.R366Q	1.000	275	0%	263	37.6%	2	0%	probably_damaging(0.999)	tolerated(0.27)	deleterious(0.524)	HMMPfam_TRM13
TMEM167B	56900	genome.wustl.edu	37	1	109635644	109635644	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020141.3	+1	provisional	e2+1	1.000	229	0%	270	43.3%	3	100%	-	-	-	-
PIP5K1A	8394	genome.wustl.edu	37	1	151214646	151214646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135638.1	+1	validated	p.R471W	1.000	526	0%	515	21.2%	18	33.3%	probably_damaging(0.985)	deleterious(0.01)	deleterious(0.838)	NULL
TCHH	7062	genome.wustl.edu	37	1	152081481	152081481	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007113.2	-1	provisional	p.R1404	0.000	326	0%	499	30.7%	0	-	-	-	-	NULL
DCST2	127579	genome.wustl.edu	37	1	154991221	154991223	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144622.2	-1	validated	p.E707in_frame_del	0.005:0.020:0.072	-	-	-	-	-	-	-	-	-	NULL
DCST2	127579	genome.wustl.edu	37	1	155005945	155005945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144622.2	-1	validated	p.A78V	0.185	53	0%	59	30.5%	0	-	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
ADAM15	8751	genome.wustl.edu	37	1	155029439	155029439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207197.1	+1	reviewed	p.T337I	0.801	43	0%	90	14.4%	25	12%	possibly_damaging(0.838)	deleterious(0.04)	deleterious(0.669)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
EFNA1	1942	genome.wustl.edu	37	1	155106005	155106005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004428.2	+1	reviewed	p.R139C	0.857	108	0%	155	13.5%	75	33.3%	possibly_damaging(0.837)	deleterious(0.01)	deleterious(0.725)	HMMPfam_Ephrin,superfamily_Cupredoxins
HCN3	57657	genome.wustl.edu	37	1	155257024	155257024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020897.1	+1	validated	p.R513H	1.000	79	0%	123	17.9%	0	-	benign(0.127)	tolerated(0.15)	neutral(0.252)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
DAP3	7818	genome.wustl.edu	37	1	155701786	155701786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004632.2	+1	reviewed	p.P319S	1.000	67	0%	47	23.4%	64	26.5%	benign(0.001)	tolerated(0.57)	neutral(0.006)	HMMPfam_DAP3
HDGF	3068	genome.wustl.edu	37	1	156713504	156713506	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126050.1	-1	reviewed	p.E234in_frame_del	0.215:0.232:0.214	-	-	-	-	-	-	-	-	-	NULL
HDGF	3068	genome.wustl.edu	37	1	156713985	156713985	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126050.1	-1	reviewed	p.A169	0.027	249	0%	382	28.5%	77	24.6%	-	-	-	NULL
CD5L	922	genome.wustl.edu	37	1	157803113	157803113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005894.2	-1	validated	p.P303H	0.001	196	0%	269	24.9%	0	-	probably_damaging(0.993)	tolerated(0.19)	deleterious(0.499)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
MNDA	4332	genome.wustl.edu	37	1	158815411	158815411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002432.1	+1	reviewed	p.A202V	0.000	101	0%	78	20.5%	3	0%	benign(0.132)	deleterious(0.05)	neutral(0.356)	NULL
FCGR2C	9103	genome.wustl.edu	37	1	161569498	161569498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201563.4	+1	reviewed	p.G293S	0.001	160	0%	202	16.8%	6	0%	benign(0.231)	deleterious(0)	neutral(0.468)	NULL
ADCY10	55811	genome.wustl.edu	37	1	167805576	167805576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018417.4	-1	reviewed	p.A1094T	0.464	172	0%	192	26.6%	0	-	probably_damaging(0.991)	tolerated(0.08)	deleterious(0.744)	superfamily_TPR-like
FMO4	2329	genome.wustl.edu	37	1	171300845	171300845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002022.1	+1	reviewed	p.G184D	0.995	250	0%	458	27.9%	2	0%	benign(0.009)	tolerated(0.36)	neutral(0.021)	HMMPfam_FMO-like,superfamily_FAD/NAD(P)-binding domain
PRRC2C	23215	genome.wustl.edu	37	1	171481297	171481297	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015172.3	+1	validated	p.N24Y	1.000	72	0%	108	28.7%	1	100%	unknown(0)	-	-	HMMPfam_BAT2_N
C1orf9	51430	genome.wustl.edu	37	1	172526830	172526830	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014283.3	+1	validated	p.G210*	1.000	70	0%	125	26.4%	1	0%	-	-	-	NULL
LOC646870	646870	genome.wustl.edu	37	1	173331761	173331761	+	RNA	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040282.2	-1	model	NULL	0.999	209	0%	274	27.7%	0	-	-	-	-	-
TNN	63923	genome.wustl.edu	37	1	175067562	175067562	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022093.1	+1	validated	p.Y650	0.079	152	0.7%	228	21.1%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SOAT1	6646	genome.wustl.edu	37	1	179319446	179319446	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003101.4	+1	provisional	p.F444I	0.998	253	0%	325	24.3%	4	25%	benign(0.001)	tolerated(0.39)	neutral(0.016)	HMMPfam_MBOAT
ENSG00000247866	0	genome.wustl.edu	37	1	180151466	180151466	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000500066	-1	known	NULL	0.000	199	0%	278	26.3%	0	-	-	-	-	-
CACNA1E	777	genome.wustl.edu	37	1	181687196	181687196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.A511T	1.000	39	0%	63	22.2%	0	-	probably_damaging(0.99)	tolerated(0.17)	deleterious(0.500)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
B3GALT2	8707	genome.wustl.edu	37	1	193149938	193149938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003783.3	-1	reviewed	p.D252G	1.000	127	0%	205	22.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Galactosyl_T
CAMSAP2	23271	genome.wustl.edu	37	1	200822523	200822523	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447701	+1	known	p.*118Q	0.709	219	0.5%	248	22.6%	3	0%	-	-	-	NULL
NAV1	89796	genome.wustl.edu	37	1	201618395	201618395	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020443.4	+1	reviewed	p.D200G	1.000	4	0.000	9	0.444	1	100%	possibly_damaging(0.85)	tolerated(0.31)	neutral(0.354)	NULL
CHI3L1	1116	genome.wustl.edu	37	1	203155445	203155445	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001276.2	-1	reviewed	p.C18	1.000	34	0%	21	23.8%	14	7.1%	-	-	-	NULL
CR2	1380	genome.wustl.edu	37	1	207651401	207651401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006658.2	+1	reviewed	p.A1025V	0.965	36	0%	68	35.3%	0	-	possibly_damaging(0.948)	deleterious(0.05)	deleterious(0.736)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
IARS2	55699	genome.wustl.edu	37	1	220320921	220320921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018060.3	+1	validated	p.A995T	0.119	96	0%	151	20.5%	51	31.3%	benign(0.029)	tolerated(0.94)	neutral(0.002)	superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_zf-FPG_IleRS
TLR5	7100	genome.wustl.edu	37	1	223283807	223283807	+	Missense_Mutation	SNP	G	G	T	rs145537963	by1000genomes	TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003268.5	-1	reviewed	p.T856N	0.007	115	0%	157	45.9%	24	66.6%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
WDR26	80232	genome.wustl.edu	37	1	224585799	224585799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025160.6	-1	reviewed	p.D445N	1.000	147	0%	135	27.4%	13	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
GUK1	2987	genome.wustl.edu	37	1	228335132	228335132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000858.5	+1	validated	p.A93T	1.000	9	0.000	21	0.286	336	23.8%	benign(0.285)	tolerated(0.55)	neutral(0.095)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
ACTA1	58	genome.wustl.edu	37	1	229568848	229568848	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100.3	-1	reviewed	p.D5	0.975	37	0%	65	23.1%	0	-	-	-	-	HMMPfam_Actin,superfamily_Actin-like ATPase domain
ARID4B	51742	genome.wustl.edu	37	1	235345770	235345770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016374.5	-1	reviewed	p.R822C	1.000	372	0%	379	20.3%	3	33.3%	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	NULL
EDARADD	128178	genome.wustl.edu	37	1	236577587	236577587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145861.2	+1	reviewed	p.E50K	0.881	125	0.8%	105	31.4%	0	-	benign(0.022)	tolerated(0.23)	neutral(0.043)	NULL
FH	2271	genome.wustl.edu	37	1	241663824	241663824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000143.2	-1	reviewed	p.V435M	1.000	334	0%	420	25%	54	40.7%	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	superfamily_L-aspartase-like
KMO	8564	genome.wustl.edu	37	1	241755363	241755363	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003679.3	+1	validated	p.W457G	0.735	350	0.3%	475	22.9%	1	0%	benign(0.054)	tolerated(0.51)	neutral(0.012)	NULL
CNST	163882	genome.wustl.edu	37	1	246829135	246829135	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152609.2	+1	validated	p.D702	1.000	72	0%	92	22.8%	1	100%	-	-	-	NULL
ZNF672	79894	genome.wustl.edu	37	1	249142831	249142831	+	Nonstop_Mutation	SNP	A	A	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024836.1	+1	provisional	p.*453S	0.001	16	0%	29	24.1%	30	6.6%	-	-	-	NULL
PXDN	7837	genome.wustl.edu	37	2	1664730	1664730	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433670	-1	known	p.Q583*	1.000	16	0%	36	44.4%	0	-	benign(0.431)	tolerated(0.3)	neutral(0.169)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
COLEC11	78989	genome.wustl.edu	37	2	3651926	3651926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418971	+1	known	p.L13P	0.957	49	0%	70	34.3%	0	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	NULL
CPSF3	51692	genome.wustl.edu	37	2	9576415	9576415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016207.2	+1	provisional	p.I229V	1.000	123	0%	143	36.4%	4	50%	benign(0.006)	tolerated(0.29)	neutral(0.029)	superfamily_Metallo-hydrolase/oxidoreductase
APOB	338	genome.wustl.edu	37	2	21231843	21231843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.F2633L	0.897	470	0%	401	38.4%	0	-	benign(0.393)	-	-	NULL
APOB	338	genome.wustl.edu	37	2	21233870	21233870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.R1957M	0.000	386	0%	348	36.8%	0	-	possibly_damaging(0.496)	-	-	NULL
POMC	5443	genome.wustl.edu	37	2	25384144	25384144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000939.2	-1	reviewed	p.D204N	0.940	9	0.000	17	0.294	2	100%	benign(0.273)	deleterious(0.03)	neutral(0.394)	NULL
SNX17	9784	genome.wustl.edu	37	2	27596116	27596116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014748.2	+1	reviewed	p.R87W	1.000	44	0%	54	29.6%	17	35.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PX,HMMSmart_PX,superfamily_PX
NRXN1	9378	genome.wustl.edu	37	2	51147142	51147142	+	Nonstop_Mutation	SNP	A	A	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000405581	-1	known	p.*279K	0.000	17	0%	18	61.1%	0	-	-	-	-	NULL
WDPCP	51057	genome.wustl.edu	37	2	63664574	63664574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015910.4	-1	validated	p.L205P	1.000	110	0%	128	41.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TIA1	7072	genome.wustl.edu	37	2	70444097	70444097	+	Silent	SNP	A	A	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022173.2	-1	reviewed	p.G168	0.999	234	0%	195	33.3%	16	43.7%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
FIGLA	344018	genome.wustl.edu	37	2	71012719	71012719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004311.3	-1	reviewed	p.T146I	0.000	462	0%	558	32.3%	0	-	benign(0)	tolerated(0.81)	neutral(0.001)	NULL
TET3	200424	genome.wustl.edu	37	2	74326595	74326595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144993.1	+1	provisional	p.E1019K	1.000	13	0%	13	30.8%	0	-	possibly_damaging(0.809)	deleterious(0.02)	deleterious(0.688)	NULL
TACR1	6869	genome.wustl.edu	37	2	75425989	75425989	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001058.3	-1	reviewed	p.Q24	1.000	45	0%	63	23.8%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
KCMF1	56888	genome.wustl.edu	37	2	85276735	85276735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020122.4	+1	validated	p.Q283R	1.000	111	0%	88	34.1%	45	55.5%	benign(0.031)	tolerated(0.09)	neutral(0.298)	NULL
ST6GAL2	84620	genome.wustl.edu	37	2	107460133	107460133	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142351.1	-1	validated	p.Q101*	0.000	43	0%	45	35.6%	0	-	-	-	-	NULL
MYO7B	4648	genome.wustl.edu	37	2	128334253	128334253	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080527.1	+1	provisional	p.G273	0.000	17	0%	16	62.5%	1	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ACVR1	90	genome.wustl.edu	37	2	158630626	158630626	+	Missense_Mutation	SNP	C	C	T	rs121912678		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105.4	-1	reviewed	p.R206H	1.000	278	0.7%	312	34.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGF_beta_GS,HMMSmart_GS,superfamily_Kinase_like
GAD1	2571	genome.wustl.edu	37	2	171716307	171716307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000817.2	+1	reviewed	p.R567Q	1.000	65	0%	45	42.2%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PLP-dependent transferases
RBM45	129831	genome.wustl.edu	37	2	178988319	178988319	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152945.2	+1	provisional	p.Q308	1.000	119	0%	126	28.6%	1	0%	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
TTN	7273	genome.wustl.edu	37	2	179410297	179410297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.R29277H	1.000	491	0%	542	35.4%	0	-	probably_damaging(0.999)	-	-	HMMPfam_fn3,HMMSmart_SM00060
SSFA2	6744	genome.wustl.edu	37	2	182780007	182780007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130445.1	+1	validated	p.T547M	0.999	300	0%	284	33.1%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPATS2L	26010	genome.wustl.edu	37	2	201284208	201284208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100422.1	+1	validated	p.R145H	0.386	76	0%	80	36.2%	7	28.5%	possibly_damaging(0.7)	tolerated(0.21)	neutral(0.295)	HMMPfam_DUF1387
CASP8	841	genome.wustl.edu	37	2	202150039	202150039	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080125.1	+1	reviewed	p.R494*	0.956	242	0%	318	33%	6	16.6%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
PARD3B	117583	genome.wustl.edu	37	2	206166190	206166190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152526.4	+1	validated	p.G737S	0.995	230	0%	257	35%	0	-	probably_damaging(0.956)	tolerated(0.06)	deleterious(0.722)	NULL
INO80D	54891	genome.wustl.edu	37	2	206921231	206921233	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017759.4	-1	validated	p.S218in_frame_del	0.061:0.037:0.040	-	-	-	-	-	-	-	-	-	NULL
SPAG16	79582	genome.wustl.edu	37	2	214174843	214174843	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024532.3	+1	validated	p.C114R	1.000	197	0%	208	39.4%	0	-	benign(0.021)	tolerated(0.66)	neutral(0.004)	superfamily_WD40 repeat-like
FN1	2335	genome.wustl.edu	37	2	216272025	216272025	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212482.1	-1	reviewed	p.S846	0.063	262	0%	276	38%	14	28.5%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CDK5R2	8941	genome.wustl.edu	37	2	219825409	219825409	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003936.3	+1	reviewed	p.D289	1.000	112	0%	105	31.4%	0	-	-	-	-	HMMPfam_CDK5_activator,superfamily_Cyclin_like
SPEG	10290	genome.wustl.edu	37	2	220333959	220333959	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005876.4	+1	validated	p.L1191	1.000	11	0%	16	37.5%	0	-	-	-	-	HMMPfam_I-set,superfamily_Immunoglobulin
GMPPA	29926	genome.wustl.edu	37	2	220371038	220371038	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013335.2	+1	reviewed	p.R352	0.011	54	0%	50	38%	36	25%	-	-	-	HMMPfam_Hexapep,superfamily_Trimeric LpxA-like enzymes
ARMC9	80210	genome.wustl.edu	37	2	232087534	232087534	+	Splice_Site	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025139.3	+1	validated	e5+1	1.000	89	0%	58	36.2%	0	-	-	-	-	-
SNORA75	654321	genome.wustl.edu	37	2	232320595	232320595	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002921.1	-1	provisional	NULL	1.000	122	0%	146	39.7%	1	100%	-	-	-	-
GIGYF2	26058	genome.wustl.edu	37	2	233710483	233710483	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103147.1	+1	reviewed	p.E1137V	1.000	189	0%	196	31.1%	1	0%	unknown(0)	deleterious(0.01)	-	NULL
GRM7	2917	genome.wustl.edu	37	3	7494328	7494328	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181874.2	+1	reviewed	p.E403	1.000	239	0%	208	29.3%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
FANCD2	2177	genome.wustl.edu	37	3	10108961	10108961	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000421731	+1	known	p.T318I	1.000	46	0%	44	34.1%	0	-	-	-	-	NULL
ARPP21	10777	genome.wustl.edu	37	3	35756947	35756947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016300.4	+1	validated	p.E305G	1.000	186	0%	183	33.3%	0	-	possibly_damaging(0.658)	deleterious(0.03)	deleterious(0.597)	NULL
TRANK1	9881	genome.wustl.edu	37	3	36898196	36898196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014831.2	-1	provisional	p.R412K	0.000	547	0%	441	35.6%	1	100%	benign(0)	tolerated(1)	-	NULL
EPM2AIP1	9852	genome.wustl.edu	37	3	37032815	37032815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014805.3	-1	reviewed	p.R585Q	0.998	118	0%	147	24.5%	0	-	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	NULL
DLEC1	9940	genome.wustl.edu	37	3	38081031	38081031	+	Silent	SNP	A	A	G	rs7616776	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007337.2	+1	reviewed	p.S105	0.002	83	0%	73	54.8%	0	-	-	-	-	NULL
XIRP1	165904	genome.wustl.edu	37	3	39228932	39228932	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194293.2	-1	provisional	p.Q669*	0.992	59	0%	63	36.5%	0	-	-	-	-	HMMPfam_Xin
HHATL	57467	genome.wustl.edu	37	3	42739794	42739794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020707.3	-1	validated	p.G178V	1.000	92	0%	84	31%	0	-	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	HMMPfam_MBOAT
TGM4	7047	genome.wustl.edu	37	3	44952500	44952500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003241.3	+1	validated	p.A553T	0.000	121	0%	114	36.8%	0	-	benign(0.007)	tolerated(0.26)	neutral(0.034)	superfamily_Transglut_C
CCDC12	151903	genome.wustl.edu	37	3	46963754	46963754	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144716.3	-1	validated	p.R130	1.000	66	0%	72	29.2%	43	46.5%	-	-	-	HMMPfam_cwf18
PLXNB1	5364	genome.wustl.edu	37	3	48456705	48456705	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130082.1	-1	validated	p.T1282	0.003	9	0.000	20	0.400	13	46.1%	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
COL7A1	1294	genome.wustl.edu	37	3	48630626	48630628	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000094.3	-1	reviewed	p.F197in_frame_del	0.676:0.963:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
CELSR3	1951	genome.wustl.edu	37	3	48689046	48689046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001407.2	-1	reviewed	p.C2010Y	1.000	19	0%	30	30%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
MST1R	4486	genome.wustl.edu	37	3	49940735	49940735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002447.2	-1	validated	p.T103M	0.993	19	0%	19	42.1%	1	100%	possibly_damaging(0.945)	tolerated(0.22)	neutral(0.431)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SEMA3B	7869	genome.wustl.edu	37	3	50311359	50311359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004636.2	+1	reviewed	p.A336V	1.000	14	0%	12	33.3%	26	26.9%	unknown(0)	-	-	NULL
DOCK3	1795	genome.wustl.edu	37	3	51395481	51395481	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004947.3	+1	validated	p.F1619	1.000	139	0%	122	35.2%	0	-	-	-	-	HMMPfam_Ded_cyto
ACY1	95	genome.wustl.edu	37	3	52020476	52020476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000666.1	+1	reviewed	p.R161Q	0.999	44	0%	28	35.7%	15	26.6%	probably_damaging(0.979)	tolerated(0.33)	neutral(0.446)	HMMPfam_Peptidase_M20,superfamily_SSF53187
NISCH	11188	genome.wustl.edu	37	3	52521685	52521685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007184.3	+1	validated	p.A726V	0.962	22	0%	34	32.4%	13	46.1%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
SFMBT1	51460	genome.wustl.edu	37	3	52962221	52962221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005158.1	-1	reviewed	p.I345T	1.000	171	0%	204	28.9%	0	-	benign(0.141)	deleterious(0)	neutral(0.457)	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
SYNPR	132204	genome.wustl.edu	37	3	63466616	63466616	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130003.1	+1	validated	p.F65I	0.986	322	0%	293	29.4%	0	-	benign(0.043)	tolerated(0.1)	neutral(0.289)	HMMPfam_MARVEL
OR5H15	403274	genome.wustl.edu	37	3	97888123	97888123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005515.1	+1	provisional	p.I194V	0.020	211	0%	196	38.8%	0	-	benign(0.002)	tolerated(0.29)	neutral(0.029)	HMMPfam_7tm_1,superfamily_SSF81321
GPR15	2838	genome.wustl.edu	37	3	98251333	98251333	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005290.1	+1	provisional	p.V152	0.003	70	0%	117	37.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CD96	10225	genome.wustl.edu	37	3	111298034	111298034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198196.2	+1	reviewed	p.V251A	0.001	278	0%	289	31.8%	0	-	possibly_damaging(0.907)	tolerated(0.11)	deleterious(0.632)	HMMSmart_SM00409,superfamily_Immunoglobulin
PLXNA1	5361	genome.wustl.edu	37	3	126748834	126748834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032242.3	+1	validated	p.L1640P	0.993	12	0%	12	41.7%	11	45.4%	benign(0.003)	tolerated(0.31)	neutral(0.027)	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
ARMC8	25852	genome.wustl.edu	37	3	137964076	137964076	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000469860	+1	known	p.S110G	1.000	40	0%	49	28.6%	1	100%	-	-	-	NULL
CLSTN2	64084	genome.wustl.edu	37	3	140140113	140140114	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022131.2	+1	validated	p.D263fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PHC3	80012	genome.wustl.edu	37	3	169815044	169815044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024947.3	-1	validated	p.R988C	1.000	422	0%	431	33.4%	2	0%	possibly_damaging(0.929)	deleterious(0)	deleterious(0.821)	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
LRRC15	131578	genome.wustl.edu	37	3	194080099	194080099	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135057.2	-1	validated	p.C564	1.000	61	0%	50	34%	0	-	-	-	-	NULL
GP5	2814	genome.wustl.edu	37	3	194118451	194118451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004488.2	-1	validated	p.K187N	0.000	96	0%	136	25%	0	-	benign(0.167)	tolerated(0.29)	neutral(0.044)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
PCGF3	10336	genome.wustl.edu	37	4	727528	727528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006315.4	+1	reviewed	p.C20Y	1.000	24	0%	25	32%	5	80%	possibly_damaging(0.854)	deleterious(0.02)	deleterious(0.712)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
KIAA0232	9778	genome.wustl.edu	37	4	6826396	6826396	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100590.1	+1	validated	p.Y72*	1.000	84	0%	127	28.3%	3	0%	-	-	-	NULL
RBM47	54502	genome.wustl.edu	37	4	40438505	40438505	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098634.1	-1	validated	p.N428I	0.998	115	0%	156	31.4%	8	25%	benign(0.341)	deleterious(0)	deleterious(0.552)	NULL
RBM47	54502	genome.wustl.edu	37	4	40440652	40440652	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098634.1	-1	validated	p.L87	1.000	11	0%	21	33.3%	2	100%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
LIMCH1	22998	genome.wustl.edu	37	4	41648508	41648509	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014988.2	+1	validated	p.E425fs	0.997:1.000	-	-	-	-	-	-	-	-	-	NULL
SLC30A9	10463	genome.wustl.edu	37	4	42003634	42003634	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006345.3	+1	validated	p.E37D	0.996	202	0%	183	25.7%	4	0%	possibly_damaging(0.791)	tolerated(0.68)	neutral(0.298)	NULL
FRYL	285527	genome.wustl.edu	37	4	48545845	48545845	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000514617	-1	known	p.G727R	0.966	210	0%	172	33.1%	1	100%	-	-	-	NULL
REST	5978	genome.wustl.edu	37	4	57797394	57797394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005612.3	+1	reviewed	p.K790N	0.001	523	0%	370	30.3%	1	100%	benign(0.059)	deleterious(0.01)	neutral(0.410)	NULL
MIR1269A	100302177	genome.wustl.edu	37	4	67142610	67142610	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408636	+1	known	NULL	0.009	50	0%	69	40.6%	0	-	-	-	-	-
SULT1B1	27284	genome.wustl.edu	37	4	70599966	70599966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014465.3	-1	reviewed	p.R131H	1.000	56	0%	68	26.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_1,superfamily_SSF52540
AMBN	258	genome.wustl.edu	37	4	71467365	71467365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016519.4	+1	reviewed	p.K175N	0.000	295	0%	303	32%	0	-	benign(0.029)	tolerated(0.4)	neutral(0.018)	HMMPfam_Amelin,HMMSmart_SM00817
AREG	374	genome.wustl.edu	37	4	75314797	75314797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001657.2	+1	reviewed	p.T115M	0.987	76	0%	64	26.6%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SEC24B	10427	genome.wustl.edu	37	4	110384141	110384141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006323.2	+1	reviewed	p.Q73R	1.000	216	0.5%	226	25.2%	0	-	possibly_damaging(0.797)	deleterious(0.03)	deleterious(0.664)	NULL
SEC24B	10427	genome.wustl.edu	37	4	110433119	110433119	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006323.2	+1	reviewed	p.P595A	1.000	192	0%	153	27.5%	3	33.3%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	superfamily_Zn-finger domain of Sec23/24,superfamily_beta-sandwich domain of Sec23/24
RRH	10692	genome.wustl.edu	37	4	110757192	110757192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006583.2	+1	reviewed	p.G143S	0.000	818	0%	848	35%	0	-	benign(0)	tolerated(0.71)	neutral(0.002)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TRPC3	7222	genome.wustl.edu	37	4	122853990	122853991	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130698.1	-1	validated	p.N141fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Ank,superfamily_ANK
KIAA1109	84162	genome.wustl.edu	37	4	123225975	123225975	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000419325	+1	known	p.Y1127*	1.000	224	0%	221	31.7%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ADAD1	132612	genome.wustl.edu	37	4	123301310	123301310	+	Missense_Mutation	SNP	C	C	T	rs13106730		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139243.3	+1	validated	p.A29V	0.005	94	0%	122	29.5%	0	-	benign(0.004)	deleterious(0.05)	neutral(0.345)	NULL
NUDT6	11162	genome.wustl.edu	37	4	123838797	123838797	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007083.3	-1	validated	p.Q101*	1.000	90	0%	104	35.6%	0	-	-	-	-	NULL
TBC1D9	23158	genome.wustl.edu	37	4	141543676	141543676	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015130.2	-1	validated	p.D1158	0.998	42	0%	62	25.8%	13	38.4%	-	-	-	NULL
TBC1D9	23158	genome.wustl.edu	37	4	141590856	141590856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015130.2	-1	validated	p.P457T	1.000	40	0%	47	27.7%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FBXW7	55294	genome.wustl.edu	37	4	153247168	153247168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033632.2	-1	reviewed	p.Y545C	1.000	170	0%	191	36.1%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FBXW7	55294	genome.wustl.edu	37	4	153303342	153303342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013415.1	-1	reviewed	p.R49Q	1.000	133	0%	148	33.1%	0	-	benign(0.003)	tolerated(0.16)	neutral(0.059)	NULL
RAPGEF2	9693	genome.wustl.edu	37	4	160268128	160268128	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000510253	+1	known	p.P101L	0.001	201	0%	207	35.3%	1	0%	-	-	-	NULL
MARCH1	55016	genome.wustl.edu	37	4	164449941	164449941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017923.3	-1	validated	p.P260S	0.446	129	0%	101	39.6%	0	-	benign(0.039)	tolerated(0.6)	neutral(0.006)	NULL
SNX25	83891	genome.wustl.edu	37	4	186272627	186272627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031953.2	+1	validated	p.Q613R	1.000	266	0%	207	30%	4	50%	probably_damaging(0.965)	tolerated(0.54)	neutral(0.414)	HMMPfam_PX,HMMSmart_PX,superfamily_PX
SDHA	6389	genome.wustl.edu	37	5	251539	251539	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004168.2	+1	reviewed	p.A584T	1.000	20	0%	36	19.4%	40	42.5%	possibly_damaging(0.946)	tolerated(0.09)	deleterious(0.686)	HMMPfam_Succ_DH_flav_C,superfamily_Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
TRIP13	9319	genome.wustl.edu	37	5	908178	908178	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004237.3	+1	reviewed	p.L250	1.000	93	0%	127	29.1%	8	25%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ADAMTS16	170690	genome.wustl.edu	37	5	5239990	5239990	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139056.2	+1	reviewed	p.P825	0.009	162	0%	225	32%	0	-	-	-	-	HMMPfam_ADAM_spacer1
MRPS30	10884	genome.wustl.edu	37	5	44815068	44815068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016640.3	+1	reviewed	p.T362A	1.000	195	0%	331	31.1%	24	50%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_PDCD9
ITGA1	3672	genome.wustl.edu	37	5	52183669	52183669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181501.1	+1	reviewed	p.R266W	1.000	169	0%	166	42.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300,superfamily_SSF69318
ANKRD55	79722	genome.wustl.edu	37	5	55479392	55479392	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024669.2	-1	validated	p.L43R	1.000	177	0%	160	25%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_ANK,superfamily_ANK
RAB3C	115827	genome.wustl.edu	37	5	58120941	58120941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138453.2	+1	provisional	p.E150K	1.000	294	0%	261	31.8%	0	-	possibly_damaging(0.569)	tolerated(1)	neutral(0.195)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
MAST4	375449	genome.wustl.edu	37	5	66459517	66459517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015183.2	+1	validated	p.P1315S	0.999	5	0.000	12	0.333	1	100%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589582	67589602	+	In_Frame_Del	DEL	TTACATGAATATAACACTCAG	TTACATGAATATAACACTCAG	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	TTACATGAATATAACACTCAG	TTACATGAATATAACACTCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.LHEYNTQ449in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
RASGRF2	5924	genome.wustl.edu	37	5	80363895	80363895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006909.1	+1	validated	p.Y147C	1.000	149	0%	155	34.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NREP	9315	genome.wustl.edu	37	5	111066690	111066690	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142475.1	-1	validated	p.N89	0.001	245	0%	207	36.2%	20	35%	-	-	-	NULL
MCC	4163	genome.wustl.edu	37	5	112363113	112363113	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085377.1	-1	reviewed	p.S982	0.381	157	0%	220	31.4%	1	0%	-	-	-	HMMPfam_MCC-bdg_PDZ
RAPGEF6	51735	genome.wustl.edu	37	5	130764605	130764605	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016340.5	-1	validated	p.S1590	1.000	115	0%	127	38.6%	0	-	-	-	-	NULL
C5orf15	56951	genome.wustl.edu	37	5	133292622	133292622	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020199.2	-1	validated	p.E242D	0.999	136	0%	220	37.7%	12	41.6%	possibly_damaging(0.862)	tolerated(0.17)	neutral(0.392)	NULL
H2AFY	9555	genome.wustl.edu	37	5	134705832	134705832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138610.2	-1	reviewed	p.A58V	1.000	14	0%	15	26.7%	55	38.1%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold
IK	3550	genome.wustl.edu	37	5	140032593	140032594	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006083.3	+1	reviewed	p.R93fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RED_N
PCDHA6	56142	genome.wustl.edu	37	5	140209586	140209586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018909.2	+1	reviewed	p.L637P	0.190	30	0%	41	34.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB7	56129	genome.wustl.edu	37	5	140553265	140553265	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018940.2	+1	reviewed	p.Y283	0.573	69	0%	111	36.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB15	56121	genome.wustl.edu	37	5	140626805	140626805	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018935.2	+1	reviewed	p.D553	0.998	55	0%	74	21.6%	0	-	-	-	-	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
PCDHGA8	9708	genome.wustl.edu	37	5	140773940	140773940	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032088.1	+1	reviewed	p.F520	0.981	45	0%	70	28.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ARAP3	64411	genome.wustl.edu	37	5	141035240	141035240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022481.5	-1	reviewed	p.P1353H	1.000	51	0%	31	38.7%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TCERG1	10915	genome.wustl.edu	37	5	145834648	145834648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006706.3	+1	reviewed	p.R30Q	1.000	113	0%	148	35.1%	1	100%	unknown(0)	deleterious(0.03)	-	NULL
GRPEL2	134266	genome.wustl.edu	37	5	148730622	148730622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152407.3	+1	validated	p.A152V	1.000	157	0%	181	28.2%	3	0%	possibly_damaging(0.901)	tolerated(0.22)	neutral(0.399)	HMMPfam_GrpE
SYNPO	11346	genome.wustl.edu	37	5	150027947	150027947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007286.5	+1	validated	p.L37P	0.997	197	0%	244	29.1%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GEMIN5	25929	genome.wustl.edu	37	5	154316705	154316705	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015465.3	-1	validated	p.G69	1.000	128	0%	144	40.3%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
PANK3	79646	genome.wustl.edu	37	5	167986125	167986125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024594.2	-1	reviewed	p.R325H	1.000	54	0%	51	43.1%	4	50%	possibly_damaging(0.847)	deleterious(0)	deleterious(0.770)	HMMPfam_Fumble,superfamily_SSF53067
SLIT3	6586	genome.wustl.edu	37	5	168671719	168671719	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003062.2	-1	validated	p.L111	1.000	157	0%	112	32.1%	0	-	-	-	-	HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_L domain-like
BPHL	670	genome.wustl.edu	37	6	3127638	3127638	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004332.2	+1	reviewed	p.M125R	1.000	170	0%	244	27%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
LOC100287622	100287622	genome.wustl.edu	37	6	5999287	5999287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342600.1	+1	model	p.P67L	1.000	33	0%	53	41.5%	33	60.6%	-	-	-	NULL
PRRC2A	7916	genome.wustl.edu	37	6	31604302	31604302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080686.2	+1	reviewed	p.P1951S	1.000	259	0%	292	38.7%	146	42.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
TNXB	7148	genome.wustl.edu	37	6	32057146	32057146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019105.6	-1	reviewed	p.A790V	0.000	14	0%	17	47.1%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ITPR3	3710	genome.wustl.edu	37	6	33638467	33638467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002224.2	+1	validated	p.A821T	0.551	44	0%	47	25.5%	2	0%	benign(0.006)	tolerated(0.66)	neutral(0.003)	NULL
FKBP5	2289	genome.wustl.edu	37	6	35544775	35544775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145775.1	-1	reviewed	p.A421V	0.991	170	0%	151	32.5%	2	0%	benign(0.041)	tolerated(0.18)	neutral(0.059)	superfamily_TPR-like
MDGA1	266727	genome.wustl.edu	37	6	37606349	37606349	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153487.3	-1	validated	p.Q877	1.000	50	0%	35	48.6%	1	0%	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
DAAM2	23500	genome.wustl.edu	37	6	39824206	39824206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015345.2	+1	validated	p.P43L	1.000	11	0%	11	36.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Drf_GBD
ZNF318	24149	genome.wustl.edu	37	6	43307205	43307205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014345.2	-1	validated	p.A1511T	0.439	326	0%	86	50%	0	-	benign(0.001)	tolerated(0.88)	-	NULL
TJAP1	93643	genome.wustl.edu	37	6	43473138	43473138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080604.2	+1	reviewed	p.E397K	1.000	35	0%	41	43.9%	4	75%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CAPN11	11131	genome.wustl.edu	37	6	44145043	44145043	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007058.3	+1	reviewed	p.D434	0.632	51	0%	40	42.5%	0	-	-	-	-	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2
EFHC1	114327	genome.wustl.edu	37	6	52319010	52319010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018100.3	+1	reviewed	p.R281W	1.000	110	0%	159	31.4%	6	66.6%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	HMMSmart_SM00676,HMMPfam_DUF1126
ENSG00000214636	0	genome.wustl.edu	37	6	52522321	52522321	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398711	+1	known	p.R40*	0.932	31	0%	32	31.2%	0	-	-	-	-	HMMPfam_SH3BGR,superfamily_Thiordxn-like_fd
PNRC1	10957	genome.wustl.edu	37	6	89793612	89793612	+	Silent	SNP	T	T	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006813.2	+1	validated	p.S227	1.000	115	0.9%	106	42.5%	32	46.8%	-	-	-	NULL
MAP3K7	6885	genome.wustl.edu	37	6	91266291	91266291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145331.1	-1	reviewed	p.A179T	1.000	150	0%	200	31.5%	3	0%	possibly_damaging(0.764)	deleterious(0.04)	deleterious(0.632)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
UFL1	23376	genome.wustl.edu	37	6	97001300	97001300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015323.4	+1	validated	p.R769H	0.974	105	0%	117	33.3%	4	0%	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	NULL
AIM1	202	genome.wustl.edu	37	6	106968434	106968434	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001624.2	+1	validated	p.S709	0.003	131	0%	114	29.8%	1	0%	-	-	-	NULL
GOPC	57120	genome.wustl.edu	37	6	117923195	117923195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020399.2	-1	validated	p.S86F	1.000	34	0%	50	52%	2	50%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
RSPO3	84870	genome.wustl.edu	37	6	127517128	127517128	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032784.3	+1	reviewed	p.S265	1.000	149	0%	196	27%	0	-	-	-	-	NULL
LAMA2	3908	genome.wustl.edu	37	6	129465146	129465146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000426.3	+1	reviewed	p.R247M	1.000	192	0%	208	36.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Laminin_N,HMMSmart_LamNT,superfamily_Gal_bind_like
CTGF	1490	genome.wustl.edu	37	6	132270412	132270412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001901.2	-1	reviewed	p.M348V	1.000	99	0%	119	28.6%	36	36.1%	possibly_damaging(0.663)	deleterious(0.02)	deleterious(0.617)	NULL
SGK1	6446	genome.wustl.edu	37	6	134491990	134491992	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143676.1	-1	reviewed	p.K462in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_S_TK_X,superfamily_Kinase_like
SHPRH	257218	genome.wustl.edu	37	6	146262922	146262922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042683.2	-1	validated	p.R776H	1.000	104	0%	86	24.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
C6orf97	80129	genome.wustl.edu	37	6	151917544	151917546	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	GGA	GGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025059.3	+1	validated	p.E517in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
IGF2R	3482	genome.wustl.edu	37	6	160494461	160494463	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000876.2	+1	reviewed	p.F1638in_frame_del	0.984:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
MAP3K4	4216	genome.wustl.edu	37	6	161528972	161528972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005922.2	+1	reviewed	p.D1364N	1.000	57	0%	67	43.3%	4	0%	probably_damaging(1)	tolerated(0.9)	deleterious(0.500)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
QKI	9444	genome.wustl.edu	37	6	163956131	163956131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006775.2	+1	validated	p.E174K	1.000	237	0%	233	29.2%	3	33.3%	possibly_damaging(0.725)	tolerated(0.65)	neutral(0.267)	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)
RPS6KA2	6196	genome.wustl.edu	37	6	166831780	166831780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006932.1	-1	reviewed	p.A632V	1.000	76	1.3%	75	28%	0	-	benign(0)	tolerated(0.25)	neutral(0.037)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
WIPI2	26100	genome.wustl.edu	37	7	5253988	5253988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000315176	+1	known	p.R7Q	0.000	74	0%	45	28.9%	0	-	unknown(0)	-	-	NULL
AIMP2	7965	genome.wustl.edu	37	7	6049016	6049016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006303.3	+1	validated	p.P8T	1.000	17	0%	16	75%	11	45.4%	benign(0.26)	deleterious(0.03)	neutral(0.392)	NULL
C7orf70	84792	genome.wustl.edu	37	7	6370373	6370373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037163.1	-1	validated	p.T138I	0.000	79	0%	63	44.4%	3	0%	benign(0.051)	deleterious(0)	neutral(0.448)	NULL
LOC340268	340268	genome.wustl.edu	37	7	9767853	9767853	+	RNA	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_041608.1	+1	model	NULL	1.000	10	0%	17	29.4%	0	-	-	-	-	-
DNAH11	8701	genome.wustl.edu	37	7	21628211	21628211	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.R644*	0.978	250	0%	279	34.1%	0	-	-	-	-	HMMPfam_DHC_N1
OGDH	4967	genome.wustl.edu	37	7	44746917	44746917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002541.3	+1	reviewed	p.Y909C	1.000	69	0%	61	24.6%	33	36.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ABCA13	154664	genome.wustl.edu	37	7	48390269	48390269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.A3412T	0.000	152	0.7%	143	30.1%	0	-	benign(0)	-	-	NULL
POM121L12	285877	genome.wustl.edu	37	7	53104003	53104003	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182595.3	+1	validated	p.R213	0.112	46	0%	58	31%	0	-	-	-	-	NULL
ADAM22	53616	genome.wustl.edu	37	7	87759747	87759747	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021723.2	+1	reviewed	p.A266	0.006	141	0%	197	34%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
SAMD9L	219285	genome.wustl.edu	37	7	92761723	92761723	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152703.2	-1	validated	p.R1188*	0.010	624	0%	992	34.7%	5	40%	-	-	-	NULL
PEG10	23089	genome.wustl.edu	37	7	94293620	94293620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040152.1	+1	reviewed	p.R251H	0.068	28	0%	34	50%	0	-	probably_damaging(0.973)	tolerated(0.12)	deleterious(0.675)	NULL
PILRB	29990	genome.wustl.edu	37	7	99964997	99964997	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013440.3	+1	reviewed	p.F227	0.002	123	0%	95	31.6%	41	48.7%	-	-	-	NULL
AGFG2	3268	genome.wustl.edu	37	7	100160514	100160514	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000429987	+1	known	p.P114Q	0.741	39	0%	49	30.6%	2	0%	-	-	-	NULL
CFTR	1080	genome.wustl.edu	37	7	117180323	117180323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000492.3	+1	reviewed	p.R347C	1.000	139	0.7%	205	23.4%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
KCND2	3751	genome.wustl.edu	37	7	119915013	119915013	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012281.2	+1	reviewed	p.H109	0.882	97	0%	157	35.7%	0	-	-	-	-	HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_POZ domain
FLNC	2318	genome.wustl.edu	37	7	128483354	128483354	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001458.4	+1	reviewed	p.G874	0.973	9	0.000	16	0.438	0	-	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
PAXIP1	22976	genome.wustl.edu	37	7	154767932	154767932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007349.3	-1	reviewed	p.P183H	1.000	98	0%	107	40.2%	1	100%	unknown(0)	deleterious(0)	-	superfamily_BRCT domain
TNKS	8658	genome.wustl.edu	37	8	9634228	9634228	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003747.2	+1	validated	p.A1322	0.020	87	0%	76	39.5%	4	50%	-	-	-	NULL
PRSS55	203074	genome.wustl.edu	37	8	10396219	10396219	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198464.2	+1	validated	p.S325	0.000	290	0.3%	385	40.8%	0	-	-	-	-	NULL
FAM167A	83648	genome.wustl.edu	37	8	11282099	11282099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053279.2	-1	validated	p.R143H	1.000	31	0%	21	52.4%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KIAA1967	57805	genome.wustl.edu	37	8	22473644	22473644	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021174.4	+1	validated	p.E577fs	1.000	-	-	-	-	-	-	-	-	-	NULL
DPYSL2	1808	genome.wustl.edu	37	8	26501579	26501579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001386.4	+1	validated	p.R361Q	1.000	94	0%	83	38.6%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Amidohydro_1,superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
TEX15	56154	genome.wustl.edu	37	8	30694679	30694679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031271.3	-1	validated	p.Y2658H	0.104	235	0%	266	36.1%	0	-	possibly_damaging(0.911)	tolerated(0.11)	deleterious(0.635)	NULL
HOOK3	84376	genome.wustl.edu	37	8	42841910	42841910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032410.3	+1	validated	p.R502C	0.916	187	0%	249	22.9%	2	0%	probably_damaging(0.968)	deleterious(0.02)	deleterious(0.793)	HMMPfam_HOOK
PI15	51050	genome.wustl.edu	37	8	75737548	75737548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015886.3	+1	reviewed	p.V22I	0.033	577	0%	569	24.8%	0	-	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
HNF4G	3174	genome.wustl.edu	37	8	76456180	76456180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004133.4	+1	validated	p.R75C	1.000	442	0.2%	429	33.1%	0	-	probably_damaging(0.984)	deleterious(0)	deleterious(0.875)	HMMPfam_zf-C4,HMMSmart_ZnF_C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_SSF57716
TPD52	7163	genome.wustl.edu	37	8	80976753	80976753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025252.1	-1	validated	p.S72L	0.093	244	0%	350	33.1%	11	18.1%	possibly_damaging(0.902)	deleterious(0)	deleterious(0.801)	HMMPfam_TPD52
ATP6V0D2	245972	genome.wustl.edu	37	8	87125949	87125949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152565.1	+1	validated	p.H48Y	1.000	357	0%	258	33.3%	1	0%	probably_damaging(0.979)	tolerated(0.09)	deleterious(0.718)	HMMPfam_vATP-synt_AC39,superfamily_ATPase_V0/A0_c/d
KIAA1429	25962	genome.wustl.edu	37	8	95539346	95539346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015496.3	-1	validated	p.S376P	1.000	437	0%	299	34.4%	0	-	probably_damaging(0.959)	tolerated(0.22)	neutral(0.445)	NULL
CCNE2	9134	genome.wustl.edu	37	8	95893903	95893905	+	In_Frame_Del	DEL	ATA	ATA	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	ATA	ATA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057749.1	-1	reviewed	p.I390in_frame_del	1.000:0.998:0.921	-	-	-	-	-	-	-	-	-	NULL
ST3GAL1	6482	genome.wustl.edu	37	8	134472014	134472014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003033.3	-1	reviewed	p.G339E	1.000	70	0%	87	19.5%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_29
FLJ43860	389690	genome.wustl.edu	37	8	142504974	142504974	+	Missense_Mutation	SNP	C	C	T	rs150372378	by1000genomes	TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207414.2	-1	validated	p.V158I	0.000	9	0.000	16	0.438	0	-	benign(0.134)	tolerated(0.69)	neutral(0.013)	NULL
LY6K	54742	genome.wustl.edu	37	8	143783116	143783116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017527.3	+1	validated	p.V126I	0.000	18	0%	17	47.1%	14	0%	possibly_damaging(0.792)	-	-	superfamily_Snake toxin-like
C9orf93	203238	genome.wustl.edu	37	9	15745572	15745574	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173550.2	+1	predicted	p.L873in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
C9orf93	203238	genome.wustl.edu	37	9	15745626	15745626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173550.2	+1	predicted	p.A890T	1.000	469	0%	561	35.3%	0	-	benign(0)	tolerated(0.8)	neutral(0.001)	NULL
ELAVL2	1993	genome.wustl.edu	37	9	23704957	23704957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004432.3	-1	reviewed	p.G149E	1.000	291	0%	284	32.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NFX1	4799	genome.wustl.edu	37	9	33347103	33347103	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002504.3	+1	reviewed	p.G805fs	1.000	-	-	-	-	-	-	-	-	-	NULL
TRBV25OR9-2	6960	genome.wustl.edu	37	9	33662478	33662478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000438417	+1	known	p.Y52H	0.998	337	0%	285	35.4%	0	-	probably_damaging(0.988)	deleterious(0.03)	deleterious(0.802)	superfamily_Immunoglobulin
DNAI1	27019	genome.wustl.edu	37	9	34506703	34506703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012144.2	+1	reviewed	p.S381N	1.000	49	0%	61	23%	1	0%	benign(0.002)	tolerated(1)	-	HMMSmart_WD40,superfamily_WD40_like
IL11RA	3590	genome.wustl.edu	37	9	34657098	34657098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142784.1	+1	reviewed	p.S133N	1.000	146	0%	127	40.9%	3	33.3%	possibly_damaging(0.819)	tolerated(0.42)	neutral(0.324)	HMMSmart_SM00060,superfamily_Fibronectin type III
MSMP	692094	genome.wustl.edu	37	9	35753674	35753674	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044264.1	-1	provisional	p.G74	0.993	44	0%	47	23.4%	4	0%	-	-	-	NULL
RECK	8434	genome.wustl.edu	37	9	36118808	36118809	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021111.2	+1	reviewed	p.A773fs	0.883:0.868	-	-	-	-	-	-	-	-	-	HMMSmart_SM00280,HMMPfam_Kazal_2,superfamily_Kazal-type serine protease inhibitors
FRMPD1	22844	genome.wustl.edu	37	9	37735655	37735655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014907.2	+1	validated	p.A442V	1.000	165	0%	156	35.3%	0	-	possibly_damaging(0.527)	tolerated(0.11)	neutral(0.450)	NULL
FAM122A	116224	genome.wustl.edu	37	9	71395787	71395788	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138333.3	+1	validated	p.V239fs	0.152:0.077	-	-	-	-	-	-	-	-	-	NULL
ALDH1A1	216	genome.wustl.edu	37	9	75545819	75545819	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000689.3	-1	reviewed	p.I96	0.991	154	0%	224	36.6%	19	21%	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
AGTPBP1	23287	genome.wustl.edu	37	9	88233965	88233965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015239.2	-1	validated	p.M716I	1.000	88	0%	101	32.7%	3	0%	benign(0.39)	deleterious(0.03)	deleterious(0.489)	NULL
ZNF782	158431	genome.wustl.edu	37	9	99580912	99580912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001662.1	-1	provisional	p.L465I	0.998	746	0.1%	744	25.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CTSL2	1515	genome.wustl.edu	37	9	99798927	99798927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001333.2	-1	reviewed	p.V167M	1.000	92	0%	108	40.7%	24	37.5%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
XPA	7507	genome.wustl.edu	37	9	100437818	100437818	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000380.3	-1	reviewed	p.H242L	1.000	85	0%	109	29.4%	6	16.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CYLC2	1539	genome.wustl.edu	37	9	105767444	105767444	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001340.3	+1	reviewed	p.E177D	0.534	465	0%	399	34.8%	0	-	unknown(0)	tolerated(0.29)	-	NULL
SLC44A1	23446	genome.wustl.edu	37	9	108118592	108118592	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080546.3	+1	validated	p.V200	1.000	198	0%	261	32.6%	2	100%	-	-	-	NULL
RPL35	11224	genome.wustl.edu	37	9	127620293	127620293	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007209.3	-1	reviewed	p.R92	1.000	8	0.000	15	0.400	1454	51.3%	-	-	-	NULL
ZBTB34	403341	genome.wustl.edu	37	9	129642988	129642988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099270.1	+1	validated	p.C433Y	1.000	49	0%	43	25.6%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF79	7633	genome.wustl.edu	37	9	130207396	130207396	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007135.2	+1	validated	p.Y473N	0.820	362	0%	332	41.6%	5	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
METTL11A	28989	genome.wustl.edu	37	9	132397697	132397697	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014064.2	+1	validated	p.N209I	1.000	22	0%	31	45.2%	18	27.7%	benign(0.3)	tolerated(0.12)	neutral(0.354)	HMMPfam_DUF858,superfamily_SSF53335
USP20	10868	genome.wustl.edu	37	9	132636948	132636948	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008563.3	+1	validated	p.L612M	1.000	25	0%	36	38.9%	4	25%	possibly_damaging(0.565)	tolerated(1)	neutral(0.193)	HMMPfam_UCH,superfamily_SSF54001
C9orf86	55684	genome.wustl.edu	37	9	139726288	139726288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024718.4	+1	validated	p.R192C	1.000	9	0.000	12	0.417	25	44%	unknown(0)	deleterious(0.01)	-	HMMSmart_SM00175,superfamily_P-loop containing nucleoside triphosphate hydrolases
PFKP	5214	genome.wustl.edu	37	10	3176690	3176690	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002627.3	+1	validated	p.P680A	1.000	161	0%	331	22.7%	83	24%	probably_damaging(0.984)	tolerated(0.06)	deleterious(0.753)	HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE
RBM17	84991	genome.wustl.edu	37	10	6154289	6154289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145547.1	+1	reviewed	p.G274D	1.000	24	0%	35	31.4%	29	27.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-patch,HMMSmart_SM00443
SFMBT2	57713	genome.wustl.edu	37	10	7218058	7218058	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029880.1	-1	provisional	p.C626	1.000	204	0%	203	27.1%	0	-	-	-	-	NULL
SEPHS1	22929	genome.wustl.edu	37	10	13370373	13370373	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012247.3	-1	reviewed	p.N243	0.971	142	0%	196	21.9%	43	16.2%	-	-	-	HMMPfam_AIRS_C,superfamily_PurM C-terminal domain-like
C1QL3	389941	genome.wustl.edu	37	10	16562570	16562570	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010908.1	-1	validated	p.C165	1.000	11	0%	36	44.4%	0	-	-	-	-	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
DNAJC1	64215	genome.wustl.edu	37	10	22048223	22048223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022365.3	-1	provisional	p.R491Q	0.012	111	0.9%	215	27%	36	16.6%	benign(0.097)	tolerated(0.31)	neutral(0.035)	NULL
MASTL	84930	genome.wustl.edu	37	10	27459301	27459301	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032844.3	+1	reviewed	p.N471	0.005	156	0%	178	24.7%	3	33.3%	-	-	-	superfamily_Kinase_like
PTCHD3	374308	genome.wustl.edu	37	10	27702635	27702635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034842.3	-1	validated	p.R182Q	0.207	32	0%	74	24.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Patched
MPP7	143098	genome.wustl.edu	37	10	28378641	28378641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173496.3	-1	validated	p.R361Q	1.000	273	0%	413	22.5%	2	50%	benign(0.026)	tolerated(0.54)	neutral(0.009)	superfamily_SSF52540
ANKRD30A	91074	genome.wustl.edu	37	10	37419199	37419199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	p.V79I	0.000	55	0%	104	23.1%	0	-	benign(0)	tolerated(0.15)	neutral(0.241)	PatternScan_ASP_PROTEASE,HMMPfam_Ank,superfamily_Ankyrin repeat
VSTM4	196740	genome.wustl.edu	37	10	50315780	50315780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031746.3	-1	validated	p.R106W	0.003	52	0%	95	20%	0	-	possibly_damaging(0.544)	deleterious(0.02)	deleterious(0.568)	HMMSmart_SM00409,superfamily_Immunoglobulin
PCDH15	65217	genome.wustl.edu	37	10	55566601	55566601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142771.1	-1	reviewed	p.L1596S	0.094	510	0%	854	23.8%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
MYPN	84665	genome.wustl.edu	37	10	69881344	69881344	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032578.2	+1	validated	p.A50G	1.000	142	0%	136	24.3%	0	-	benign(0.27)	deleterious(0.05)	neutral(0.374)	NULL
MYPN	84665	genome.wustl.edu	37	10	69902806	69902806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032578.2	+1	validated	p.R338C	1.000	280	0%	275	29.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
UNC5B	219699	genome.wustl.edu	37	10	73053193	73053193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170744.3	+1	validated	p.S602G	1.000	91	0%	108	16.7%	6	33.3%	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	HMMPfam_ZU5,HMMSmart_SM00218
MCU	90550	genome.wustl.edu	37	10	74619090	74619090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138357.1	+1	provisional	p.A126T	1.000	532	0%	732	24%	6	0%	benign(0.006)	tolerated(0.3)	neutral(0.029)	HMMPfam_DUF607
ANXA7	310	genome.wustl.edu	37	10	75139867	75139867	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004034.2	-1	reviewed	p.T359	0.922	999	0%	1187	24.6%	62	29%	-	-	-	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335
PTEN	5728	genome.wustl.edu	37	10	89720741	89720741	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.Q298*	1.000	316	0.3%	401	78.3%	18	72.2%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
HTR7	3363	genome.wustl.edu	37	10	92616932	92616932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019859.3	-1	reviewed	p.C166Y	1.000	11	0%	25	32%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ABCC2	1244	genome.wustl.edu	37	10	101559079	101559079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000392.3	+1	reviewed	p.L328P	0.977	905	0%	947	23.4%	1	0%	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
PPRC1	23082	genome.wustl.edu	37	10	103899212	103899212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015062.3	+1	reviewed	p.C316Y	1.000	81	0%	115	33.9%	2	0%	benign(0.121)	deleterious(0)	neutral(0.454)	NULL
PDCD11	22984	genome.wustl.edu	37	10	105184985	105184985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014976.1	+1	validated	p.M1003T	0.087	117	0%	141	24.1%	3	66.6%	benign(0.003)	tolerated(0.78)	neutral(0.001)	NULL
SORCS1	114815	genome.wustl.edu	37	10	108366977	108366977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013031.1	-1	reviewed	p.P1038S	1.000	134	0%	156	29.5%	0	-	benign(0.294)	deleterious(0.04)	neutral(0.440)	NULL
TCF7L2	6934	genome.wustl.edu	37	10	114901026	114901026	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030756.4	+1	reviewed	p.T189	0.995	198	0%	255	29.8%	4	25%	-	-	-	HMMPfam_CTNNB1_binding
ATRNL1	26033	genome.wustl.edu	37	10	117026389	117026389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207303.2	+1	validated	p.G630R	1.000	136	0%	288	18.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00423,superfamily_Plexin repeat
KRTAP5-6	440023	genome.wustl.edu	37	11	1718786	1718786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012416.1	+1	validated	p.C104Y	0.985	150	0%	154	40.3%	0	-	unknown(0)	deleterious(0.04)	-	PatternScan_VWFC_1
FAM160A2	84067	genome.wustl.edu	37	11	6244358	6244358	+	Silent	SNP	G	G	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032127.3	-1	validated	p.A296	0.840	373	0%	357	38.1%	6	16.6%	-	-	-	HMMPfam_RAI16-like
MRGPRX3	117195	genome.wustl.edu	37	11	18158964	18158964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054031.3	+1	reviewed	p.D72G	0.998	131	0%	196	32.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
NAV2	89797	genome.wustl.edu	37	11	20078094	20078094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396087	+1	known	p.S1640F	0.000	81	0%	67	34.3%	0	-	benign(0.133)	tolerated(0.09)	neutral(0.307)	NULL
CAPRIN1	4076	genome.wustl.edu	37	11	34110996	34110996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005898.4	+1	validated	p.A429V	1.000	82	0%	72	26.4%	16	37.5%	possibly_damaging(0.538)	tolerated(0.2)	neutral(0.231)	NULL
OR5D13	390142	genome.wustl.edu	37	11	55541737	55541737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001967.1	+1	provisional	p.V275A	0.004	260	0%	250	35.2%	0	-	possibly_damaging(0.527)	deleterious(0.01)	deleterious(0.584)	HMMPfam_7tm_1,superfamily_SSF81321
CTNND1	1500	genome.wustl.edu	37	11	57564239	57564239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085458.1	+1	validated	p.S244N	1.000	169	0%	169	30.8%	6	0%	probably_damaging(0.964)	tolerated(0.31)	neutral(0.433)	NULL
OR9I1	219954	genome.wustl.edu	37	11	57886332	57886332	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005211.1	-1	validated	p.I195	0.000	174	0%	191	26.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
DAK	26007	genome.wustl.edu	37	11	61113950	61113950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015533.3	+1	reviewed	p.A568V	1.000	30	0%	25	32%	27	55.5%	unknown(0)	deleterious(0.01)	-	HMMPfam_Dak2,superfamily_Citrobacter dihydroxyacetone kinase extra ATP-binding domain
TUT1	64852	genome.wustl.edu	37	11	62349083	62349083	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022830.2	-1	reviewed	p.R122C	0.974	33	0%	36	25%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ROM1	6094	genome.wustl.edu	37	11	62382116	62382116	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000327.3	+1	reviewed	p.R287	1.000	51	0%	44	20.5%	6	33.3%	unknown(0)	-	-	HMMPfam_Tetraspannin
SLC22A9	114571	genome.wustl.edu	37	11	63137718	63137718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080866.2	+1	validated	p.T64A	0.026	315	0.3%	379	34.3%	0	-	possibly_damaging(0.796)	tolerated(0.15)	deleterious(0.540)	NULL
ATG2A	23130	genome.wustl.edu	37	11	64684453	64684453	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015104.2	-1	validated	p.I52N	1.000	5	0.000	12	0.417	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
LOC440043	440043	genome.wustl.edu	37	11	64942732	64942732	+	RNA	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_015843.3	-1	model	NULL	0.998	192	0%	217	31.3%	8	12.5%	-	-	-	-
SF3B2	10992	genome.wustl.edu	37	11	65831171	65831173	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006842.2	+1	reviewed	p.K770in_frame_del	0.999:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MRPL11	65003	genome.wustl.edu	37	11	66204588	66204588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016050.3	-1	reviewed	p.R154C	0.130	75	0%	108	41.7%	36	38.8%	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Ribosomal_L11,HMMSmart_SM00649,superfamily_Ribosomal protein L11 C-terminal domain
SPTBN2	6712	genome.wustl.edu	37	11	66460481	66460481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006946.2	-1	reviewed	p.A1649T	1.000	72	0%	95	40%	6	50%	benign(0.002)	tolerated(0.41)	neutral(0.015)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
IGHMBP2	3508	genome.wustl.edu	37	11	68703791	68703791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002180.2	+1	reviewed	p.R615C	0.636	108	0%	107	29.9%	3	0%	possibly_damaging(0.693)	deleterious(0.01)	deleterious(0.653)	superfamily_P-loop containing nucleoside triphosphate hydrolases
POLD3	10714	genome.wustl.edu	37	11	74336609	74336609	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006591.1	+1	validated	p.E297G	0.998	153	0%	125	28.8%	4	75%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_CDC27
KCTD21	283219	genome.wustl.edu	37	11	77885236	77885236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029859.1	-1	provisional	p.T122M	0.446	100	0%	104	47.1%	0	-	possibly_damaging(0.95)	tolerated(0.24)	neutral(0.431)	NULL
CCDC89	220388	genome.wustl.edu	37	11	85396653	85396653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152723.1	-1	provisional	p.A174E	0.959	258	0%	209	30.6%	2	0%	benign(0.249)	tolerated(1)	neutral(0.025)	NULL
HTR3A	3359	genome.wustl.edu	37	11	113853984	113853984	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213621.3	+1	reviewed	p.L173	0.952	315	0%	289	36%	3	0%	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
CBL	867	genome.wustl.edu	37	11	119170373	119170373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005188.2	+1	reviewed	p.G868E	1.000	641	0%	613	35.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UBA,HMMSmart_UBA
ARHGEF12	23365	genome.wustl.edu	37	11	120346178	120346182	+	Frame_Shift_Del	DEL	TTAAG	TTAAG	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	TTAAG	TTAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015313.1	+1	reviewed	p.K1081fs	1.000:1.000:1.000:1.000:0.996	-	-	-	-	-	-	-	-	-	HMMSmart_SM00233,superfamily_PH domain-like
ARHGAP32	9743	genome.wustl.edu	37	11	128842407	128842407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142685.1	-1	validated	p.P1318S	0.589	132	0%	147	45.6%	3	100%	benign(0.014)	tolerated(0.21)	neutral(0.044)	NULL
ZBTB44	29068	genome.wustl.edu	37	11	130106776	130106776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000397753	-1	known	p.A494T	1.000	18	0%	17	47.1%	1	100%	probably_damaging(0.99)	tolerated(0.15)	deleterious(0.682)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
KDM5A	5927	genome.wustl.edu	37	12	432830	432830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042603.1	-1	reviewed	p.R696W	1.000	132	0%	157	37.6%	0	-	probably_damaging(0.993)	tolerated(0.06)	deleterious(0.772)	HMMPfam_zf-C5HC2
WNK1	65125	genome.wustl.edu	37	12	1017742	1017742	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018979.3	+1	reviewed	p.T2311	1.000	107	0%	103	27.2%	14	35.7%	-	-	-	NULL
ATN1	1822	genome.wustl.edu	37	12	7047786	7047786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007026.1	+1	reviewed	p.S887T	1.000	99	0%	117	29.9%	75	41.3%	possibly_damaging(0.444)	deleterious(0)	deleterious(0.590)	HMMPfam_Atrophin-1
KLRB1	3820	genome.wustl.edu	37	12	9760353	9760353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002258.2	-1	reviewed	p.R28Q	0.138	225	0%	201	37.8%	1	0%	benign(0.018)	tolerated(0.35)	neutral(0.021)	NULL
GPRC5A	9052	genome.wustl.edu	37	12	13061997	13061997	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003979.3	+1	reviewed	p.R272*	0.310	275	0%	251	38.2%	14	7.1%	-	-	-	HMMPfam_7tm_3
GUCY2C	2984	genome.wustl.edu	37	12	14774035	14774035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004963.3	-1	validated	p.T906I	1.000	189	0%	193	31.1%	1	0%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
AMN1	196394	genome.wustl.edu	37	12	31862291	31862291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113402.1	-1	validated	p.I36T	1.000	212	0%	228	39.9%	0	-	possibly_damaging(0.795)	deleterious(0.01)	deleterious(0.704)	NULL
C12orf35	55196	genome.wustl.edu	37	12	32138766	32138766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018169.3	+1	validated	p.N1626I	0.000	117	0%	106	31.1%	13	38.4%	benign(0.003)	tolerated(0.17)	neutral(0.059)	NULL
CPNE8	144402	genome.wustl.edu	37	12	39161536	39161536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153634.2	-1	reviewed	p.A159V	1.000	179	0%	197	33%	1	0%	benign(0)	tolerated(1)	-	HMMSmart_C2,superfamily_C2_CaLB
NELL2	4753	genome.wustl.edu	37	12	45059329	45059329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145107.1	-1	reviewed	p.P511L	1.000	239	0%	215	43.7%	0	-	possibly_damaging(0.917)	tolerated(0.25)	neutral(0.405)	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,superfamily_ConA_like_lec_gl,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
PRPF40B	25766	genome.wustl.edu	37	12	50027226	50027226	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031698.1	+1	provisional	p.C137Y	1.000	360	0%	374	35.3%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WW,HMMSmart_SM00456,superfamily_WW domain
KRT6C	286887	genome.wustl.edu	37	12	52862991	52862991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173086.4	-1	reviewed	p.Y517C	0.859	106	0%	136	37.5%	9	44.4%	unknown(0)	tolerated(0.18)	-	NULL
OR6C3	254786	genome.wustl.edu	37	12	55725804	55725804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054104.1	+1	provisional	p.T107I	0.001	469	0%	484	31.8%	0	-	possibly_damaging(0.688)	deleterious(0.01)	deleterious(0.651)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
GPR182	11318	genome.wustl.edu	37	12	57389789	57389789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007264.3	+1	reviewed	p.V266I	0.984	171	0.6%	183	35%	1	0%	benign(0.018)	tolerated(0.11)	neutral(0.272)	HMMPfam_7tm_1,superfamily_SSF81321
NAB2	4665	genome.wustl.edu	37	12	57485292	57485292	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005967.3	+1	reviewed	p.R156	0.613	77	0%	57	40.4%	4	50%	-	-	-	NULL
MBD6	114785	genome.wustl.edu	37	12	57919721	57919722	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052897.3	+1	validated	p.S325fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CEP290	80184	genome.wustl.edu	37	12	88487606	88487606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025114.3	-1	reviewed	p.R1084W	0.894	73	0%	49	36.7%	3	66.6%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
SLC41A2	84102	genome.wustl.edu	37	12	105239709	105239709	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032148.3	-1	validated	p.S433	1.000	113	0%	126	34.1%	1	0%	-	-	-	HMMPfam_MgtE
TBX5	6910	genome.wustl.edu	37	12	114793313	114793313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448888	-1	known	p.H378Y	0.000	48	0%	47	31.9%	0	-	unknown(0)	-	-	NULL
TBX5	6910	genome.wustl.edu	37	12	114803961	114803961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080718.1	-1	reviewed	p.D331N	0.000	268	0%	243	28.4%	0	-	benign(0.125)	tolerated(0.25)	neutral(0.048)	NULL
SRRM4	84530	genome.wustl.edu	37	12	119563191	119563191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194286.2	+1	validated	p.R174Q	1.000	57	0%	56	35.7%	0	-	unknown(0)	tolerated(0.13)	-	NULL
ATP12A	479	genome.wustl.edu	37	13	25283521	25283521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001676.5	+1	reviewed	p.A838V	1.000	32	0%	46	21.7%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
GPR12	2835	genome.wustl.edu	37	13	27333009	27333009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005288.3	-1	validated	p.C319Y	1.000	12	0%	17	35.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
GSX1	219409	genome.wustl.edu	37	13	28367883	28367883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145657.1	+1	provisional	p.R198H	1.000	58	1.7%	59	45.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
ALOX5AP	241	genome.wustl.edu	37	13	31338107	31338107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001629.2	+1	reviewed	p.R117H	1.000	436	0%	364	32.7%	9	0%	probably_damaging(0.999)	tolerated(0.25)	deleterious(0.527)	HMMPfam_MAPEG
POSTN	10631	genome.wustl.edu	37	13	38154760	38154760	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006475.2	-1	validated	p.R489	0.992	226	0%	316	30.7%	4	0%	-	-	-	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
MRPS31	10240	genome.wustl.edu	37	13	41340976	41340976	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005830.3	-1	reviewed	p.R116*	0.661	196	0.5%	251	33.9%	5	20%	-	-	-	NULL
NAA16	79612	genome.wustl.edu	37	13	41947888	41947888	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024561.4	+1	validated	p.N757	0.101	301	0%	334	36.5%	0	-	-	-	-	NULL
VPS36	51028	genome.wustl.edu	37	13	53016551	53016553	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016075.2	-1	validated	p.L42in_frame_del	0.991:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SLAIN1	122060	genome.wustl.edu	37	13	78320678	78320678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040153.2	+1	validated	p.A75T	0.997	232	0%	282	27.7%	1	100%	possibly_damaging(0.566)	deleterious(0.01)	deleterious(0.599)	NULL
MBNL2	10150	genome.wustl.edu	37	13	98009779	98009779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144778.2	+1	reviewed	p.A283E	1.000	238	0%	224	32.6%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RAP2A	5911	genome.wustl.edu	37	13	98116573	98116573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021033.6	+1	validated	p.M143I	1.000	134	0%	122	35.2%	2	0%	benign(0)	tolerated(0.77)	neutral(0.001)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
SLC10A2	6555	genome.wustl.edu	37	13	103718332	103718332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000452.2	-1	reviewed	p.F90L	1.000	262	0%	280	32.5%	0	-	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	HMMPfam_SBF
COL4A1	1282	genome.wustl.edu	37	13	110845222	110845222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001845.4	-1	reviewed	p.G474R	0.593	37	2.7%	30	43.3%	12	8.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Collagen
TM9SF1	10548	genome.wustl.edu	37	14	24662463	24662463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006405.5	-1	validated	p.R120C	1.000	71	0%	73	35.6%	35	48.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_EMP70
MDGA2	161357	genome.wustl.edu	37	14	47426750	47426750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113498.1	-1	validated	p.R570Q	1.000	182	0%	160	23.1%	0	-	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	superfamily_SSF48726
C14orf135	64430	genome.wustl.edu	37	14	60591543	60591543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022495.5	+1	validated	p.A651V	0.966	332	0%	322	30.1%	1	0%	benign(0.02)	tolerated(0.16)	neutral(0.060)	NULL
SYNE2	23224	genome.wustl.edu	37	14	64469641	64469641	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.A1330	0.001	251	0.4%	229	30.1%	0	-	-	-	-	NULL
TMEM229B	161145	genome.wustl.edu	37	14	67940517	67940517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182526.2	-1	provisional	p.P42S	1.000	9	0.000	18	0.222	1	0%	possibly_damaging(0.67)	tolerated(0.19)	neutral(0.287)	NULL
ZFYVE26	23503	genome.wustl.edu	37	14	68249976	68249976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015346.3	-1	reviewed	p.P1298L	0.363	342	1.5%	131	35.9%	5	20%	benign(0.014)	deleterious(0)	neutral(0.445)	NULL
ALDH6A1	4329	genome.wustl.edu	37	14	74534089	74534089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005589.2	-1	reviewed	p.N346D	1.000	126	0%	103	28.2%	3	33.3%	benign(0.003)	tolerated(0.14)	neutral(0.249)	HMMPfam_Aldedh,superfamily_ALDH-like
LTBP2	4053	genome.wustl.edu	37	14	74969606	74969606	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000428.2	-1	reviewed	p.R1640	0.979	25	0%	37	29.7%	5	20%	-	-	-	superfamily_TB module/8-cys domain
TTLL5	23093	genome.wustl.edu	37	14	76420772	76420772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015072.4	+1	reviewed	p.A1277T	0.856	356	0%	334	37.7%	6	50%	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
SPATA7	55812	genome.wustl.edu	37	14	88895757	88895757	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018418.4	+1	reviewed	p.D326	0.000	105	0%	158	25.3%	3	66.6%	-	-	-	NULL
FBLN5	10516	genome.wustl.edu	37	14	92349298	92349298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006329.3	-1	reviewed	p.D288N	1.000	99	1%	66	31.8%	17	11.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00179,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
SLC24A4	123041	genome.wustl.edu	37	14	92920290	92920290	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153646.2	+1	validated	p.D292	0.663	51	0%	42	33.3%	0	-	-	-	-	NULL
LGMN	5641	genome.wustl.edu	37	14	93178024	93178024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008530.1	-1	reviewed	p.V267I	1.000	219	0%	276	26.4%	35	34.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C13
HHIPL1	84439	genome.wustl.edu	37	14	100118886	100118886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127258.1	+1	validated	p.R194H	1.000	23	0%	20	35%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_Soluble quinoprotein glucose dehydrogenase
DYNC1H1	1778	genome.wustl.edu	37	14	102516208	102516208	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.F4558C	1.000	51	0%	74	31.1%	289	46%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Dynein_heavy
MARK3	4140	genome.wustl.edu	37	14	103932313	103932314	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128918.1	+1	validated	p.R265fs	1.000:0.999	-	-	-	-	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LOC727924	727924	genome.wustl.edu	37	15	22332707	22332707	+	RNA	DEL	C	C	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_015416.1	+1	predicted	NULL	0.978	-	-	-	-	-	-	-	-	-	-
APBA2	321	genome.wustl.edu	37	15	29346574	29346574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005503.3	+1	reviewed	p.G163S	0.001	50	2%	49	32.7%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	NULL
CHAC1	79094	genome.wustl.edu	37	15	41247912	41247912	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024111.3	+1	validated	p.D245	0.017	32	0%	22	45.5%	5	20%	-	-	-	HMMPfam_ChaC
ZNF280D	54816	genome.wustl.edu	37	15	56959143	56959143	+	Silent	SNP	A	A	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017661.2	-1	validated	p.A529	0.890	118	0%	131	29%	1	0%	-	-	-	NULL
SLTM	79811	genome.wustl.edu	37	15	59182564	59182565	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024755.2	-1	validated	p.E665fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
LDHAL6B	92483	genome.wustl.edu	37	15	59499241	59499241	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033195.1	+1	provisional	p.T34	0.000	71	0%	89	38.2%	0	-	-	-	-	NULL
CA12	771	genome.wustl.edu	37	15	63619395	63619395	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001218.3	-1	reviewed	p.G315	0.998	46	0%	59	20.3%	1	0%	-	-	-	NULL
DENND4A	10260	genome.wustl.edu	37	15	65962417	65962417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144823.1	-1	validated	p.P1524L	1.000	40	0%	40	32.5%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
STRA6	64220	genome.wustl.edu	37	15	74476278	74476278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142617.1	-1	reviewed	p.H407Y	0.000	39	0%	34	41.2%	15	26.6%	benign(0.011)	tolerated(0.23)	neutral(0.042)	NULL
SH2D7	646892	genome.wustl.edu	37	15	78390287	78390287	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101404.1	+1	provisional	p.R95*	1.000	71	0%	68	26.5%	0	-	-	-	-	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
ALPK3	57538	genome.wustl.edu	37	15	85410568	85410568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020778.4	+1	validated	p.D1784N	1.000	68	0%	72	44.4%	1	100%	benign(0.264)	tolerated(0.11)	neutral(0.299)	HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like)
AKAP13	11214	genome.wustl.edu	37	15	86287029	86287031	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006738.4	+1	reviewed	p.N2793in_frame_del	1.000:0.998:1.000	-	-	-	-	-	-	-	-	-	NULL
NTRK3	4916	genome.wustl.edu	37	15	88483980	88483980	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012338.1	-1	reviewed	p.V530	0.747	253	0%	284	35.6%	0	-	-	-	-	superfamily_Protein kinase-like (PK-like)
PRR25	388199	genome.wustl.edu	37	16	855518	855523	+	In_Frame_Del	DEL	GCAGCT	GCAGCT	-	rs137876084	byCluster;by1000genomes	TCGA-AX-A05S-01	TCGA-AX-A05S-01	GCAGCT	GCAGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013638.1	+1	provisional	p.AA27in_frame_del	0.001:0.001:0.001:0.002:0.003:0.001	-	-	-	-	-	-	-	-	-	NULL
IFT140	9742	genome.wustl.edu	37	16	1657232	1657232	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014714.3	-1	validated	p.P12	0.003	122	0%	123	32.5%	0	-	-	-	-	NULL
ZNF213	7760	genome.wustl.edu	37	16	3188488	3188488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134655.1	+1	validated	p.T157A	0.000	21	0%	30	53.3%	7	42.8%	benign(0.011)	tolerated(0.53)	neutral(0.008)	NULL
ABCC6	368	genome.wustl.edu	37	16	16315596	16315596	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001171.5	-1	reviewed	p.Y43*	1.000	45	0%	52	42.3%	0	-	-	-	-	NULL
SMG1	23049	genome.wustl.edu	37	16	18847420	18847420	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015092.4	-1	reviewed	p.R2631H	1.000	40	0%	39	20.5%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
EEF2K	29904	genome.wustl.edu	37	16	22237173	22237173	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013302.3	+1	reviewed	p.P41	1.000	124	0%	96	28.1%	0	-	-	-	-	NULL
ENSG00000245868	0	genome.wustl.edu	37	16	23489655	23489655	+	RNA	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000498959	+1	novel	NULL	0.001	265	0%	140	27.9%	0	-	-	-	-	-
GGA2	23062	genome.wustl.edu	37	16	23491143	23491143	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015044.4	-1	reviewed	p.P358A	0.006	89	0%	46	37%	5	40%	benign(0.005)	tolerated(0.11)	neutral(0.272)	NULL
GSG1L	146395	genome.wustl.edu	37	16	27802695	27802695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109763.1	-1	validated	p.V331A	1.000	24	0%	18	27.8%	0	-	benign(0.029)	deleterious(0)	neutral(0.446)	NULL
SEZ6L2	26470	genome.wustl.edu	37	16	29897042	29897042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201575.2	-1	validated	p.L413I	0.983	48	0%	38	36.8%	6	16.6%	benign(0.362)	tolerated(0.18)	neutral(0.171)	HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SETD1A	9739	genome.wustl.edu	37	16	30977325	30977325	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014712.1	+1	provisional	p.G708A	0.948	72	0%	46	32.6%	1	100%	possibly_damaging(0.845)	-	-	NULL
SHCBP1	79801	genome.wustl.edu	37	16	46615863	46615863	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024745.4	-1	validated	p.C599*	0.031	319	0%	465	32.5%	2	50%	-	-	-	NULL
LONP2	83752	genome.wustl.edu	37	16	48295468	48295468	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031490.2	+1	provisional	p.A286V	1.000	229	0%	283	29%	6	66.6%	probably_damaging(0.999)	tolerated(1)	deleterious(0.490)	NULL
SLC6A2	6530	genome.wustl.edu	37	16	55719140	55719140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001043.3	+1	reviewed	p.V244I	1.000	59	0%	50	30%	0	-	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	HMMPfam_SNF
NUP93	9688	genome.wustl.edu	37	16	56870621	56870621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014669.3	+1	validated	p.L631I	1.000	200	0.5%	150	34%	18	55.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nic96
THAP11	57215	genome.wustl.edu	37	16	67876890	67876890	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020457.2	+1	reviewed	p.L145	1.000	55	0%	53	41.5%	16	37.5%	-	-	-	NULL
IRF8	3394	genome.wustl.edu	37	16	85952310	85952310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002163.2	+1	reviewed	p.V297M	1.000	10	0%	23	43.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SMAD_FHA,HMMPfam_IRF-3
MIS12	79003	genome.wustl.edu	37	17	5392339	5392340	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024039.1	+1	provisional	p.C53fs	0.020:0.016	-	-	-	-	-	-	-	-	-	HMMPfam_Mis12
ZBTB4	57659	genome.wustl.edu	37	17	7366166	7366166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128833.1	-1	validated	p.A712V	0.001	45	0%	50	36%	4	75%	benign(0.253)	deleterious(0.01)	neutral(0.432)	NULL
CTC1	80169	genome.wustl.edu	37	17	8138476	8138476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025099.5	-1	validated	p.R445H	0.000	113	0%	100	30%	0	-	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
USP43	124739	genome.wustl.edu	37	17	9631549	9631549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153210.3	+1	validated	p.L872I	0.000	30	0%	28	39.3%	8	50%	possibly_damaging(0.736)	deleterious(0.01)	deleterious(0.675)	NULL
MYH13	8735	genome.wustl.edu	37	17	10212664	10212664	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003802.2	-1	validated	p.L1686	0.309	19	0%	24	41.7%	0	-	-	-	-	HMMPfam_Myosin_tail_1
TEKT3	64518	genome.wustl.edu	37	17	15234814	15234814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031898.2	-1	reviewed	p.A30V	0.976	203	0%	168	41.1%	1	100%	benign(0.277)	deleterious(0.04)	neutral(0.378)	NULL
ENSG00000251537	0	genome.wustl.edu	37	17	15554750	15554750	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455584	-1	known	p.R73K	0.001	426	0.2%	375	34.4%	4	25%	-	-	-	NULL
MAPK7	5598	genome.wustl.edu	37	17	19284406	19284406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002749.3	+1	reviewed	p.R295L	1.000	24	0%	44	38.6%	9	44.4%	unknown(0)	deleterious(0.01)	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ALDH3A2	224	genome.wustl.edu	37	17	19575092	19575092	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031806.1	+1	reviewed	p.Q422	0.009	173	0%	132	31.1%	34	67.6%	-	-	-	superfamily_Aldehyde_DH/Histidinol_DH
SUPT6H	6830	genome.wustl.edu	37	17	27016476	27016476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003170.3	+1	validated	p.A1080V	1.000	91	1.1%	119	26.9%	13	46.1%	benign(0.33)	tolerated(0.1)	neutral(0.390)	NULL
SEZ6	124925	genome.wustl.edu	37	17	27284458	27284458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178860.4	-1	validated	p.Q801R	1.000	67	0%	89	32.6%	0	-	benign(0.311)	tolerated(0.32)	neutral(0.121)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CORO6	84940	genome.wustl.edu	37	17	27945918	27945918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032854.3	-1	validated	p.P175T	1.000	7	0.000	22	0.500	1	0%	benign(0.001)	tolerated(0.35)	neutral(0.021)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
TMEM132E	124842	genome.wustl.edu	37	17	32961879	32961879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207313.1	+1	provisional	p.R494C	1.000	14	0%	19	26.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UNC45B	146862	genome.wustl.edu	37	17	33477187	33477187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173167.2	+1	validated	p.R109Q	0.230	62	0%	54	38.9%	0	-	benign(0.33)	tolerated(0.19)	neutral(0.153)	HMMPfam_TPR_1,superfamily_ARM repeat,HMMSmart_SM00028,superfamily_TPR-like
SLFN11	91607	genome.wustl.edu	37	17	33680666	33680666	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104587.1	-1	validated	p.A537	0.000	92	0%	115	15.7%	2	0%	-	-	-	NULL
KRT20	54474	genome.wustl.edu	37	17	39041174	39041174	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019010.1	-1	reviewed	p.V88	1.000	119	0%	73	34.2%	2	0%	-	-	-	HMMPfam_Filament
KRT32	3882	genome.wustl.edu	37	17	39623297	39623297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002278.3	-1	reviewed	p.G94D	0.997	50	0%	50	40%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
DHX8	1659	genome.wustl.edu	37	17	41599511	41599511	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004941.1	+1	reviewed	p.P1120	0.012	91	0%	90	36.7%	20	40%	-	-	-	HMMPfam_DUF1605
DCAKD	79877	genome.wustl.edu	37	17	43102073	43102073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128631.1	-1	validated	p.A142T	0.064	32	0%	42	38.1%	9	22.2%	benign(0.271)	tolerated(0.52)	neutral(0.038)	HMMPfam_CoaE,superfamily_P-loop containing nucleoside triphosphate hydrolases
HOXB9	3219	genome.wustl.edu	37	17	46700309	46700309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024017.4	-1	reviewed	p.R236W	1.000	317	0%	300	35.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
IGF2BP1	10642	genome.wustl.edu	37	17	47115720	47115720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006546.3	+1	reviewed	p.L198I	0.902	265	0%	46	37%	0	-	benign(0.196)	tolerated(0.08)	neutral(0.319)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
BRIP1	83990	genome.wustl.edu	37	17	59761337	59761337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032043.1	-1	reviewed	p.G1024R	0.002	263	0%	233	30.5%	0	-	benign(0)	tolerated(0.86)	neutral(0.001)	NULL
ACE	1636	genome.wustl.edu	37	17	61557836	61557836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000789.2	+1	reviewed	p.R265Q	0.996	26	0%	36	47.2%	2	0%	benign(0.059)	tolerated(0.74)	neutral(0.005)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
KCNH6	81033	genome.wustl.edu	37	17	61611293	61611293	+	Missense_Mutation	SNP	C	C	T	rs184322799	by1000genomes	TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030779.2	+1	reviewed	p.A241V	0.998	45	0%	42	45.2%	0	-	benign(0.023)	deleterious(0.03)	neutral(0.365)	NULL
BPTF	2186	genome.wustl.edu	37	17	65850503	65850503	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182641.3	+1	reviewed	p.Y354F	0.997	244	0%	239	35.6%	0	-	possibly_damaging(0.767)	tolerated(0.54)	neutral(0.292)	NULL
BPTF	2186	genome.wustl.edu	37	17	65882299	65882299	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004459.6	+1	reviewed	p.I703	0.967	307	0%	313	35.8%	1	100%	-	-	-	NULL
KCNJ2	3759	genome.wustl.edu	37	17	68171387	68171387	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000891.2	+1	reviewed	p.L69	0.465	113	0%	122	32%	0	-	-	-	-	HMMPfam_IRK,superfamily_Voltage-gated potassium channels
SEPT9	10801	genome.wustl.edu	37	17	75398198	75398198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113491.1	+1	reviewed	p.R45Q	1.000	34	0%	23	60.9%	27	37%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CANT1	124583	genome.wustl.edu	37	17	76989737	76989737	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138793.3	-1	reviewed	p.S367	0.002	38	0%	39	38.5%	10	10%	-	-	-	HMMPfam_Apyrase,superfamily_Apyrase
GAA	2548	genome.wustl.edu	37	17	78081446	78081446	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000152.3	+1	reviewed	p.A261	0.943	12	0%	12	33.3%	7	14.2%	-	-	-	NULL
RNF213	57674	genome.wustl.edu	37	17	78335565	78335565	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.Q3744	1.000	24	0%	54	29.6%	0	-	-	-	-	NULL
RNF213	57674	genome.wustl.edu	37	17	78355489	78355489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.R4647H	0.674	36	0%	42	28.6%	9	33.3%	benign(0.001)	tolerated(0.2)	neutral(0.049)	NULL
SLC38A10	124565	genome.wustl.edu	37	17	79226360	79226360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037984.1	-1	validated	p.A527V	0.000	29	0%	33	24.2%	24	45.8%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
CCDC137	339230	genome.wustl.edu	37	17	79638853	79638853	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199287.2	+1	validated	p.R193*	0.973	16	0%	19	31.6%	5	0%	-	-	-	NULL
MYOM1	8736	genome.wustl.edu	37	18	3079267	3079267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003803.3	-1	reviewed	p.E1520K	1.000	64	0%	77	29.9%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_Immunoglobulin
CIDEA	1149	genome.wustl.edu	37	18	12264321	12264321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198289.2	+1	reviewed	p.V101I	0.000	81	0%	79	27.8%	0	-	benign(0.002)	tolerated(0.45)	neutral(0.012)	HMMPfam_CIDE-N,HMMSmart_CAD,superfamily_SSF54277
DSG2	1829	genome.wustl.edu	37	18	29110980	29110980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001943.3	+1	reviewed	p.D349N	0.720	191	0%	186	36.6%	7	85.7%	benign(0.001)	tolerated(0.09)	neutral(0.296)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
FAM59A	64762	genome.wustl.edu	37	18	29848074	29848074	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022751.1	-1	provisional	p.G796	0.143	59	0%	54	38.9%	3	66.6%	-	-	-	NULL
GALNT1	2589	genome.wustl.edu	37	18	33272178	33272178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020474.3	+1	reviewed	p.S398L	1.000	201	0%	203	33%	7	42.8%	benign(0.015)	tolerated(0.08)	neutral(0.300)	superfamily_Nucleotide-diphospho-sugar transferases
SLC39A6	25800	genome.wustl.edu	37	18	33694087	33694087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012319.3	-1	validated	p.H606Y	1.000	137	0%	103	29.1%	16	68.7%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Zip
WDR7	23335	genome.wustl.edu	37	18	54448877	54448877	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015285.2	+1	reviewed	p.H1060	0.043	103	0%	86	11.6%	0	-	-	-	-	NULL
ALPK2	115701	genome.wustl.edu	37	18	56203528	56203528	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052947.3	-1	validated	p.A1297	0.001	177	0%	154	37.7%	0	-	-	-	-	NULL
SERPINB11	89778	genome.wustl.edu	37	18	61379911	61379911	+	Missense_Mutation	SNP	C	C	T	rs193224810	by1000genomes	TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080475.2	+1	validated	p.T114M	0.000	212	0%	241	33.6%	0	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
AP3D1	8943	genome.wustl.edu	37	19	2121046	2121046	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003938.5	-1	validated	p.R432	0.988	9	0.000	14	0.500	17	17.6%	-	-	-	HMMPfam_Adaptin_N,superfamily_ARM repeat
ZNF555	148254	genome.wustl.edu	37	19	2853461	2853461	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152791.4	+1	validated	p.C466	0.001	89	0%	77	31.2%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
STAP2	55620	genome.wustl.edu	37	19	4327199	4327199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017720.2	-1	reviewed	p.V229M	0.975	65	0%	74	40.5%	52	36.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SH2 domain
LOC100133070	100133070	genome.wustl.edu	37	19	4793669	4793669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719147.1	-1	model	p.D103N	0.553	27	0%	32	56.2%	2	0%	-	-	-	NULL
LONP1	9361	genome.wustl.edu	37	19	5693662	5693662	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004793.2	-1	reviewed	p.S813	0.652	11	0%	22	40.9%	60	45%	-	-	-	HMMPfam_Lon_C,superfamily_Ribosomal_S5_D2-typ_fold
CAMSAP3	57662	genome.wustl.edu	37	19	7682892	7682892	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080429.2	+1	validated	p.W1260*	1.000	29	0%	31	41.9%	50	48%	-	-	-	superfamily_PRC-barrel domain,HMMPfam_DUF1781
FBN3	84467	genome.wustl.edu	37	19	8182069	8182069	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032447.3	-1	reviewed	p.D1190	0.965	51	0%	58	44.8%	0	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
LOC100287659	100287659	genome.wustl.edu	37	19	11169410	11169410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343639.1	-1	model	p.R37H	0.000	14	0%	20	50%	0	-	-	-	-	NULL
ENSG00000188474	0	genome.wustl.edu	37	19	12223780	12223780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000339302	+1	known	p.P473L	0.984	75	0%	94	22.3%	1	0%	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	superfamily_SSF57667
WDR83OS	51398	genome.wustl.edu	37	19	12780035	12780035	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016145.3	-1	validated	p.P21	0.986	21	0%	30	43.3%	100	46%	-	-	-	HMMPfam_UPF0139
SAMD1	90378	genome.wustl.edu	37	19	14199247	14199247	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138352.1	-1	provisional	p.P427	0.795	21	0%	24	33.3%	112	48.2%	-	-	-	NULL
DDX39A	10212	genome.wustl.edu	37	19	14520641	14520641	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005804.2	-1	reviewed	p.H259	0.746	33	0%	41	36.6%	56	53.5%	-	-	-	HMMSmart_DEXDc,superfamily_SSF52540
SLC1A6	6511	genome.wustl.edu	37	19	15065049	15065049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005071.1	-1	provisional	p.T421M	1.000	47	0%	36	30.6%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_SDF,PatternScan_NA_DICARBOXYL_SYMP_2
NOTCH3	4854	genome.wustl.edu	37	19	15281257	15281257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000435.2	-1	reviewed	p.R1667C	0.977	28	0%	29	34.5%	18	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CYP4F3	4051	genome.wustl.edu	37	19	15752370	15752370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000896.2	+1	reviewed	p.R49W	0.000	53	0%	42	38.1%	1	0%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
OR10H2	26538	genome.wustl.edu	37	19	15839245	15839245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013939.2	+1	validated	p.R131H	0.999	149	0%	168	30.4%	0	-	benign(0.061)	tolerated(0.47)	neutral(0.015)	HMMPfam_7tm_1,superfamily_SSF81321
USE1	55850	genome.wustl.edu	37	19	17330117	17330117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018467.3	+1	validated	p.A173V	1.000	18	0%	13	30.8%	17	47%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Use1
PDE4C	5143	genome.wustl.edu	37	19	18329174	18329174	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000923.3	-1	validated	p.T400	0.985	54	0%	54	27.8%	0	-	-	-	-	HMMPfam_PDEase_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like
FKBP8	23770	genome.wustl.edu	37	19	18650434	18650434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012181.3	-1	reviewed	p.S130L	0.012	53	0%	57	21.1%	115	21.7%	probably_damaging(0.961)	tolerated(0.43)	neutral(0.418)	HMMPfam_FKBP_C,superfamily_SSF54534
ZNF93	81931	genome.wustl.edu	37	19	20045476	20045476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031218.3	+1	validated	p.G571D	0.151	245	0%	282	39%	4	100%	benign(0.128)	tolerated(0.09)	neutral(0.307)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LSR	51599	genome.wustl.edu	37	19	35758600	35758600	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205834.2	+1	validated	p.T626S	0.971	12	0%	18	44.4%	186	38.7%	possibly_damaging(0.942)	tolerated(0.48)	neutral(0.398)	NULL
ARHGAP33	115703	genome.wustl.edu	37	19	36272095	36272095	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052948.3	+1	reviewed	p.H342	0.581	43	0%	39	38.5%	0	-	-	-	-	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
SIPA1L3	23094	genome.wustl.edu	37	19	38610381	38610381	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015073.1	+1	validated	p.F909	1.000	79	0%	78	38.5%	5	60%	-	-	-	NULL
CYP2A7P1	1550	genome.wustl.edu	37	19	41530280	41530280	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000301171	-1	known	p.E237	0.879	104	0%	78	19.2%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome_P450
ARHGEF1	9138	genome.wustl.edu	37	19	42396677	42396677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199002.1	+1	reviewed	p.R139H	1.000	26	0%	30	23.3%	6	16.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam
GRIK5	2901	genome.wustl.edu	37	19	42507499	42507499	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454993	-1	known	p.S210G	0.976	72	0%	44	45.5%	0	-	-	-	-	NULL
LIPE	3991	genome.wustl.edu	37	19	42914764	42914764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005357.2	-1	reviewed	p.G372R	0.999	109	0%	98	29.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSL_N
CCDC114	93233	genome.wustl.edu	37	19	48805992	48805992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144577.3	-1	validated	p.R363H	0.002	37	0%	44	52.3%	3	66.6%	benign(0.004)	deleterious(0.03)	neutral(0.364)	NULL
SCAF1	58506	genome.wustl.edu	37	19	50148366	50148366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021228.2	+1	validated	p.T28M	0.989	16	0%	38	18.4%	4	75%	unknown(0)	deleterious(0)	-	NULL
CPT1C	126129	genome.wustl.edu	37	19	50208272	50208272	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152359.1	+1	provisional	p.Y261fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
ZNF616	90317	genome.wustl.edu	37	19	52618314	52618314	+	Silent	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178523.3	-1	validated	p.S701	0.000	420	0%	338	30.5%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF160	90338	genome.wustl.edu	37	19	53571638	53571638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102603.1	-1	reviewed	p.R717C	0.000	292	0%	278	31.3%	0	-	possibly_damaging(0.864)	tolerated(0.08)	deleterious(0.635)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF347	84671	genome.wustl.edu	37	19	53652530	53652530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032584.2	-1	validated	p.V36M	0.866	493	0%	411	33.1%	4	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
LENG8	114823	genome.wustl.edu	37	19	54967522	54967522	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052925.2	+1	validated	p.S441	0.276	46	0%	63	25.4%	6	33.3%	-	-	-	NULL
ZNF548	147694	genome.wustl.edu	37	19	57910152	57910152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152909.3	+1	validated	p.S166L	0.001	432	0%	322	25.2%	2	0%	possibly_damaging(0.845)	tolerated(0.67)	neutral(0.327)	NULL
ZNF551	90233	genome.wustl.edu	37	19	58198747	58198747	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138347.3	+1	validated	p.C352	0.998	250	0.8%	297	34.3%	1	0%	benign(0)	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C20orf194	25943	genome.wustl.edu	37	20	3305558	3305558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009984.1	-1	validated	p.P416S	0.006	249	0%	241	27.8%	1	0%	benign(0.009)	tolerated(0.14)	neutral(0.250)	NULL
SMOX	54498	genome.wustl.edu	37	20	4167953	4167953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175839.1	+1	reviewed	p.R523C	1.000	55	0%	50	32%	18	22.2%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
SSTR4	6754	genome.wustl.edu	37	20	23016483	23016483	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001052.2	+1	validated	p.A121	0.408	19	0%	28	46.4%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
HM13	81502	genome.wustl.edu	37	20	30149471	30149471	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178581.1	+1	reviewed	p.S294R	1.000	87	0%	78	35.9%	171	43.2%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMSmart_PSN,HMMPfam_Peptidase_A22B
PXMP4	11264	genome.wustl.edu	37	20	32295752	32295752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183397.2	-1	validated	p.A67V	0.000	39	0%	50	20%	9	22.2%	unknown(0)	-	-	NULL
ITCH	83737	genome.wustl.edu	37	20	33001684	33001687	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	AAGT	AAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031483.4	+1	reviewed	p.S159fs	0.998:0.999	-	-	-	-	-	-	-	-	-	NULL
NCOA6	23054	genome.wustl.edu	37	20	33345759	33345759	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.Q264	0.969	61	0%	74	35.1%	0	-	-	-	-	NULL
TTI1	9675	genome.wustl.edu	37	20	36631111	36631111	+	Silent	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014657.1	-1	predicted	p.P857	0.000	127	0%	142	38.7%	8	50%	-	-	-	superfamily_ARM-type_fold
LBP	3929	genome.wustl.edu	37	20	36974959	36974959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004139.2	+1	reviewed	p.A14T	0.007	17	0%	18	38.9%	0	-	unknown(0)	tolerated(0.13)	-	NULL
MMP9	4318	genome.wustl.edu	37	20	44639602	44639602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004994.2	+1	reviewed	p.L188M	0.999	99	0%	119	40.3%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
FAM65C	140876	genome.wustl.edu	37	20	49218765	49218765	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080829.2	-1	predicted	p.H497	0.000	14	0%	21	38.1%	1	0%	-	-	-	NULL
GNAS	2778	genome.wustl.edu	37	20	57485864	57485864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080425.2	+1	reviewed	p.R1032C	1.000	79	0%	76	15.8%	1910	26.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
YTHDF1	54915	genome.wustl.edu	37	20	61834124	61834124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017798.3	-1	validated	p.R390C	1.000	60	0%	63	38.1%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SON	6651	genome.wustl.edu	37	21	34926723	34926723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138927.1	+1	reviewed	p.N1729S	1.000	86	0%	131	29%	6	16.6%	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	NULL
DYRK1A	1859	genome.wustl.edu	37	21	38853090	38853090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001396.3	+1	reviewed	p.E160K	1.000	153	0%	208	31.7%	0	-	benign(0.216)	deleterious(0.04)	neutral(0.370)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
TRAPPC10	7109	genome.wustl.edu	37	21	45502961	45502961	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003274.4	+1	reviewed	p.P672	0.000	140	0%	137	27%	5	60%	-	-	-	NULL
TRPM2	7226	genome.wustl.edu	37	21	45855083	45855083	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003307.3	+1	reviewed	p.L1348	0.998	45	0%	37	48.6%	10	30%	-	-	-	superfamily_Nudix
POFUT2	23275	genome.wustl.edu	37	21	46698047	46698047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133635.4	-1	validated	p.D226N	1.000	143	0%	172	29.1%	3	0%	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	HMMPfam_O-FucT
LSS	4047	genome.wustl.edu	37	21	47636307	47636307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001438.2	-1	reviewed	p.R260H	1.000	13	0%	21	33.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Terp_cyc_toroid
MICAL3	57553	genome.wustl.edu	37	22	18305733	18305733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015241.2	-1	provisional	p.T1096I	1.000	17	0%	18	44.4%	0	-	possibly_damaging(0.85)	deleterious(0.02)	deleterious(0.710)	NULL
DGCR14	8220	genome.wustl.edu	37	22	19121896	19121896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022719.2	-1	reviewed	p.R415Q	1.000	8	0.000	12	0.583	25	48%	probably_damaging(0.992)	tolerated(0.27)	deleterious(0.481)	NULL
PI4KA	5297	genome.wustl.edu	37	22	21065053	21065053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058004.2	-1	reviewed	p.G1948V	1.000	35	0%	27	14.8%	18	38.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
IGLV6-57	28778	genome.wustl.edu	37	22	22550437	22550437	+	Silent	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390285	+1	known	p.T38	0.001	47	0%	77	28.6%	1	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CABIN1	23523	genome.wustl.edu	37	22	24479195	24479195	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012295.2	+1	reviewed	p.Q921	0.955	31	0%	32	40.6%	3	33.3%	-	-	-	superfamily_SSF48452
SUSD2	56241	genome.wustl.edu	37	22	24580151	24580151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019601.3	+1	validated	p.E163K	1.000	22	0%	19	26.3%	3	33.3%	possibly_damaging(0.916)	tolerated(0.43)	neutral(0.381)	NULL
MORC2	22880	genome.wustl.edu	37	22	31330918	31330919	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014941.1	-1	provisional	p.L619fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
CSNK1E	1454	genome.wustl.edu	37	22	38695977	38695977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001894.4	-1	reviewed	p.T220I	1.000	72	0%	58	36.2%	49	40.8%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
L3MBTL2	83746	genome.wustl.edu	37	22	41605722	41605722	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031488.4	+1	validated	p.M16K	1.000	393	0%	231	29.9%	0	-	unknown(0)	deleterious(0)	-	NULL
TCF20	6942	genome.wustl.edu	37	22	42608372	42608372	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005650.1	-1	reviewed	p.P980	0.003	109	0%	100	32%	0	-	-	-	-	NULL
ENSG00000198888	0	genome.wustl.edu	37	MT	3454	3454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000361390	+1	known	p.A50T	NULL	110	0%	12	58.3%	8006	62.3%	possibly_damaging(0.908)	deleterious(0.01)	deleterious(0.767)	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1
CSF2RA	1438	genome.wustl.edu	37	X	1413240	1413240	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006140.4	+1	reviewed	p.S222	0.002	59	0%	101	33.7%	2	0%	-	-	-	superfamily_Fibronectin type III
ARSH	347527	genome.wustl.edu	37	X	2933043	2933043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011719.1	+1	validated	p.R125W	0.000	126	0%	102	45.1%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
ARSH	347527	genome.wustl.edu	37	X	2942143	2942143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011719.1	+1	validated	p.L328P	0.976	18	0%	16	56.2%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
STS	412	genome.wustl.edu	37	X	7267972	7267972	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000351.4	+1	reviewed	p.N474	0.000	283	0%	247	29.6%	5	0%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
DMD	1756	genome.wustl.edu	37	X	31838106	31838106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.T2432I	0.000	156	0%	168	41.7%	1	0%	benign(0.009)	tolerated(0.15)	neutral(0.241)	NULL
FAM47A	158724	genome.wustl.edu	37	X	34149162	34149162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203408.3	-1	validated	p.R412C	0.003	183	0%	249	25.3%	0	-	benign(0.034)	deleterious(0.01)	neutral(0.408)	NULL
BCOR	54880	genome.wustl.edu	37	X	39933048	39933048	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001123385.1	-1	reviewed	p.N517	0.189	43	0%	51	37.3%	3	0%	-	-	-	NULL
RBM10	8241	genome.wustl.edu	37	X	47030473	47030473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005676.3	+1	reviewed	p.R83Q	1.000	42	0%	41	48.8%	3	0%	probably_damaging(0.982)	tolerated(0.11)	deleterious(0.698)	NULL
RBM10	8241	genome.wustl.edu	37	X	47039373	47039373	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005676.3	+1	reviewed	p.R332	0.976	28	0%	17	29.4%	10	100%	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
CFP	5199	genome.wustl.edu	37	X	47487912	47487913	+	Frame_Shift_Ins	INS	-	-	G	rs11436787	byCluster	TCGA-AX-A05S-01	TCGA-AX-A05S-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000480317	-1	known	p.S89fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
ZNF182	7569	genome.wustl.edu	37	X	47837015	47837015	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006962.1	-1	reviewed	p.P157	0.013	181	0%	155	26.5%	0	-	-	-	-	NULL
EBP	10682	genome.wustl.edu	37	X	48382317	48382317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006579.2	+1	reviewed	p.A53V	0.695	100	0%	139	30.9%	11	0%	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_EBP
MIR500A	574502	genome.wustl.edu	37	X	49773063	49773063	+	RNA	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385051	+1	known	NULL	0.830	454	0%	422	38.2%	0	-	-	-	-	-
FAM123B	139285	genome.wustl.edu	37	X	63411057	63411057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152424.3	-1	reviewed	p.R704C	0.999	205	0%	153	28.8%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
EDA2R	60401	genome.wustl.edu	37	X	65819474	65819474	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021783.2	-1	reviewed	p.H249L	1.000	35	0%	57	36.8%	0	-	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
NLGN3	54413	genome.wustl.edu	37	X	70389868	70389868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018977.3	+1	reviewed	p.T803I	0.995	55	0%	57	15.8%	0	-	benign(0.266)	deleterious(0.01)	neutral(0.434)	NULL
TAF1	6872	genome.wustl.edu	37	X	70683821	70683821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004606.3	+1	reviewed	p.H1869Q	0.919	43	0%	34	32.4%	3	0%	benign(0)	tolerated(0.97)	-	NULL
CXCR3	2833	genome.wustl.edu	37	X	70837274	70837274	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001504.1	-1	reviewed	p.A17fs	0.000	-	-	-	-	-	-	-	-	-	NULL
CXorf26	51260	genome.wustl.edu	37	X	75395384	75395384	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016500.3	+1	predicted	p.N78I	0.015	84	0%	82	29.3%	15	60%	benign(0.004)	tolerated(0.32)	neutral(0.024)	HMMPfam_DUF757
POU3F4	5456	genome.wustl.edu	37	X	82763801	82763801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000307.3	+1	reviewed	p.A157T	0.753	44	0%	37	43.2%	0	-	benign(0.001)	tolerated(0.61)	neutral(0.004)	NULL
POF1B	79983	genome.wustl.edu	37	X	84560852	84560852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024921.3	-1	reviewed	p.T461M	1.000	203	0%	267	37.5%	0	-	benign(0)	tolerated(0.69)	neutral(0.002)	NULL
SRPX2	27286	genome.wustl.edu	37	X	99920260	99920260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014467.2	+1	reviewed	p.R185C	0.993	59	0%	55	36.4%	2	0%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_HYR
THOC2	57187	genome.wustl.edu	37	X	122759783	122759783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081550.1	-1	validated	p.T1013A	1.000	421	0.2%	459	34.2%	6	0%	possibly_damaging(0.945)	deleterious(0.01)	deleterious(0.795)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123518611	123518612	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014253.3	-1	reviewed	p.S2050fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
BCORL1	63035	genome.wustl.edu	37	X	129147630	129147630	+	Silent	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021946.3	+1	reviewed	p.P294	0.000	177	0%	168	35.7%	2	0%	-	-	-	NULL
TFDP3	51270	genome.wustl.edu	37	X	132352180	132352180	+	Silent	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016521.2	-1	reviewed	p.P36	0.083	56	0%	41	26.8%	0	-	-	-	-	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135772879	135772879	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004840.2	-1	reviewed	p.Q359E	1.000	145	0%	139	37.4%	0	-	benign(0.289)	tolerated(0.06)	neutral(0.411)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
RBMX	27316	genome.wustl.edu	37	X	135961586	135961588	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	TGT	TGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002139.3	-1	reviewed	p.MVEA1in_frame_delWLK	1.000	-	-	-	-	-	-	-	-	-	NULL
LDOC1	23641	genome.wustl.edu	37	X	140271020	140271020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012317.2	-1	reviewed	p.R63W	0.957	90	0%	76	28.9%	30	93.3%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
IDH3G	3421	genome.wustl.edu	37	X	153052955	153052955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004135.2	-1	reviewed	p.R213H	1.000	10	0%	18	33.3%	61	67.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Iso_dh,superfamily_SSF53659
HCFC1	3054	genome.wustl.edu	37	X	153225348	153225348	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A05S-01	TCGA-AX-A05S-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000354233	-1	known	e9-2	1.000	9	0.000	9	0.444	2	50%	-	-	-	-
