Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
UBE4B	10277	genome.wustl.edu	37	1	10190663	10190663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105562.1	+1	reviewed	p.A601T	1.000	266	0%	208	40.9%	4	0%	probably_damaging(0.965)	deleterious(0.03)	deleterious(0.771)	HMMPfam_Ufd2P_core
C1orf127	148345	genome.wustl.edu	37	1	11008740	11008740	+	Silent	SNP	C	C	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377008	-1	known	p.S317	0.011	10	0%	16	56.2%	0	-	-	-	-	NULL
ANGPTL7	10218	genome.wustl.edu	37	1	11254588	11254588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021146.2	+1	provisional	p.R248H	1.000	107	0%	89	46.1%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
AKR7A3	22977	genome.wustl.edu	37	1	19611515	19611515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012067.2	-1	validated	p.A201T	1.000	36	0%	46	10.9%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
HSPG2	3339	genome.wustl.edu	37	1	22157773	22157773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374695	-1	known	p.H3833N	1.000	18	0%	13	46.2%	37	18.9%	possibly_damaging(0.723)	tolerated(0.34)	neutral(0.286)	superfamily_Concanavalin A-like lectins/glucanases
THRAP3	9967	genome.wustl.edu	37	1	36754757	36754757	+	Silent	SNP	T	T	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005119.3	+1	validated	p.S379	0.995	431	0%	358	40.2%	9	55.5%	-	-	-	NULL
COL9A2	1298	genome.wustl.edu	37	1	40775806	40775806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001852.3	-1	reviewed	p.A257T	0.991	92	0%	55	34.5%	4	0%	unknown(0)	tolerated(0.21)	-	NULL
PIK3R3	8503	genome.wustl.edu	37	1	46509408	46509410	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	GTT	GTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114172.1	-1	validated	p.N441in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_SH2 domain
CTH	1491	genome.wustl.edu	37	1	70896052	70896052	+	Silent	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001902.4	+1	reviewed	p.H233	0.422	109	0%	85	23.5%	0	-	-	-	-	HMMPfam_Cys_Met_Meta_PP,superfamily_PLP-dependent transferases
IFI44	10561	genome.wustl.edu	37	1	79128474	79128474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006417.4	+1	validated	p.P400H	0.000	328	0%	295	14.2%	7	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_SSF52540
SYDE2	84144	genome.wustl.edu	37	1	85656331	85656331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032184.1	-1	validated	p.V284I	1.000	387	0%	367	39.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
AMY2B	280	genome.wustl.edu	37	1	104116380	104116380	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020978.3	+1	reviewed	p.D188E	0.996	663	0%	868	38.1%	11	81.8%	benign(0.002)	tolerated(0.35)	neutral(0.021)	HMMPfam_Alpha-amylase,HMMSmart_SM00642,superfamily_(Trans)glycosidases
KCNA10	3744	genome.wustl.edu	37	1	111061203	111061203	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005549.2	-1	reviewed	p.D69	0.911	173	0%	108	39.8%	0	-	-	-	-	NULL
DDX20	11218	genome.wustl.edu	37	1	112305591	112305591	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007204.4	+1	reviewed	p.I425N	1.000	59	0%	78	51.3%	4	0%	possibly_damaging(0.858)	deleterious(0)	deleterious(0.776)	superfamily_SSF52540
CD101	9398	genome.wustl.edu	37	1	117568229	117568229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004258.3	+1	validated	p.A843T	0.001	137	0%	124	41.9%	5	100%	possibly_damaging(0.477)	tolerated(0.67)	neutral(0.160)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
IGSF9	57549	genome.wustl.edu	37	1	159900074	159900074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135050.1	-1	validated	p.V657I	0.044	250	0%	282	19.5%	21	9.5%	benign(0)	tolerated(1)	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
ATP1A4	480	genome.wustl.edu	37	1	160151574	160151574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144699.3	+1	reviewed	p.R946H	1.000	251	0%	362	21.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
ADAMTS4	9507	genome.wustl.edu	37	1	161163074	161163074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005099.4	-1	reviewed	p.A614T	1.000	23	0%	16	25%	0	-	possibly_damaging(0.76)	tolerated(0.16)	neutral(0.341)	NULL
RGS5	8490	genome.wustl.edu	37	1	163117162	163117162	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003617.3	-1	validated	p.R172	1.000	245	0%	434	19.6%	7	0%	-	-	-	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
PIGC	5279	genome.wustl.edu	37	1	172411227	172411227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002642.3	-1	reviewed	p.L179S	1.000	87	0%	148	15.5%	46	15.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_GPI2
TNR	7143	genome.wustl.edu	37	1	175293595	175293595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003285.2	-1	validated	p.V1285A	1.000	507	0%	613	19.1%	0	-	benign(0)	tolerated(0.05)	neutral(0.345)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
RNASEL	6041	genome.wustl.edu	37	1	182554499	182554499	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021133.2	-1	reviewed	p.Y481	0.015	318	0%	440	25.7%	0	-	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
LAMC1	3915	genome.wustl.edu	37	1	183109552	183109552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002293.3	+1	reviewed	p.A1496V	1.000	106	0%	226	18.6%	58	17.2%	benign(0.013)	tolerated(1)	neutral(0.001)	NULL
HMCN1	83872	genome.wustl.edu	37	1	186084537	186084537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.N3851S	1.000	143	0%	225	16.9%	0	-	probably_damaging(1)	tolerated(0.29)	deleterious(0.529)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PTPRC	5788	genome.wustl.edu	37	1	198704353	198704353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002838.3	+1	reviewed	p.Y790C	1.000	146	0%	210	15.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
KDM5B	10765	genome.wustl.edu	37	1	202710666	202710666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006618.3	-1	validated	p.Q925R	0.992	45	0%	116	17.2%	6	0%	benign(0.001)	tolerated(0.64)	neutral(0.003)	HMMPfam_PLU-1
CR1	1378	genome.wustl.edu	37	1	207783009	207783009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000651.4	+1	reviewed	p.P2091S	0.027	30	0%	28	67.9%	0	-	probably_damaging(0.954)	tolerated(0.06)	deleterious(0.720)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
HSD11B1	3290	genome.wustl.edu	37	1	209879205	209879205	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005525.2	+1	reviewed	p.I46	0.665	180	0%	290	17.9%	0	-	-	-	-	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
NEK2	4751	genome.wustl.edu	37	1	211847677	211847677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002497.2	-1	validated	p.G92V	1.000	114	0%	157	22.9%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
NENF	29937	genome.wustl.edu	37	1	212619247	212619247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013349.4	+1	reviewed	p.V140I	1.000	237	0.4%	328	24.1%	315	21.9%	probably_damaging(0.986)	tolerated(0.05)	deleterious(0.780)	HMMPfam_Cyt-b5,superfamily_Cyt_B5
JMJD4	65094	genome.wustl.edu	37	1	227920313	227920313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023007.2	-1	validated	p.A391V	1.000	6	0.000	19	0.211	28	42.8%	benign(0.16)	tolerated(0.06)	neutral(0.337)	NULL
TAF5L	27097	genome.wustl.edu	37	1	229750202	229750202	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014409.3	-1	reviewed	p.Q10E	1.000	114	0%	192	21.9%	0	-	benign(0.119)	tolerated(0.06)	neutral(0.332)	NULL
ACTN2	88	genome.wustl.edu	37	1	236925836	236925836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103.2	+1	reviewed	p.A868T	0.009	16	0%	38	31.6%	0	-	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMPfam_efhand_Ca_insen,superfamily_EF-hand
RYR2	6262	genome.wustl.edu	37	1	237813271	237813271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.A2536V	1.000	178	0.6%	342	20.8%	0	-	possibly_damaging(0.932)	-	-	NULL
FMN2	56776	genome.wustl.edu	37	1	240341299	240341299	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020066.4	+1	validated	p.R621*	0.763	158	0%	227	24.2%	0	-	-	-	-	NULL
HNRNPU	3192	genome.wustl.edu	37	1	245027595	245027595	+	Silent	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031844.2	-1	reviewed	p.P5	0.998	7	0.000	14	0.357	8	37.5%	-	-	-	superfamily_SAP domain
KIF26B	55083	genome.wustl.edu	37	1	245583046	245583046	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018012.3	+1	provisional	p.R389*	0.998	129	0%	208	13%	0	-	-	-	-	NULL
SLC4A1AP	22950	genome.wustl.edu	37	2	27900641	27900641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018158.2	+1	validated	p.A538V	0.994	212	0%	193	34.2%	3	0%	possibly_damaging(0.95)	tolerated(0.06)	deleterious(0.716)	NULL
QPCT	25797	genome.wustl.edu	37	2	37596908	37596908	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012413.3	+1	reviewed	p.F268	0.630	430	0%	421	32.8%	3	0%	-	-	-	HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases
FAM161A	84140	genome.wustl.edu	37	2	62069326	62069326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032180.2	-1	validated	p.Q118R	0.997	183	0%	147	39.5%	0	-	probably_damaging(0.995)	tolerated(0.41)	deleterious(0.473)	NULL
ZNF638	27332	genome.wustl.edu	37	2	71650385	71650387	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014972.1	+1	reviewed	p.E1248in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
RTKN	6242	genome.wustl.edu	37	2	74655844	74655844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015055.1	-1	reviewed	p.P291S	1.000	33	0%	26	34.6%	14	42.8%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
MOGS	7841	genome.wustl.edu	37	2	74691657	74691657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006302.2	-1	reviewed	p.G182V	1.000	36	0%	33	42.4%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_63
KDM3A	55818	genome.wustl.edu	37	2	86709196	86709196	+	Silent	SNP	C	C	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018433.5	+1	reviewed	p.R886	1.000	260	0%	299	34.1%	7	85.7%	-	-	-	NULL
ZNF2	7549	genome.wustl.edu	37	2	95847741	95847741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453539	+1	known	p.R403C	1.000	87	0%	86	27.9%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CNGA3	1261	genome.wustl.edu	37	2	99013075	99013075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001298.2	+1	reviewed	p.R481L	0.999	35	0%	29	51.7%	0	-	probably_damaging(0.992)	deleterious(0.02)	deleterious(0.831)	superfamily_cNMP_binding
LONRF2	164832	genome.wustl.edu	37	2	100915336	100915336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198461.3	-1	validated	p.A480T	0.999	267	0%	211	18%	1	0%	benign(0)	tolerated(0.25)	neutral(0.037)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_TPR-like,superfamily_RING/U-box
SOWAHC	65124	genome.wustl.edu	37	2	110373439	110373439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023016.3	+1	validated	p.R458H	0.997	33	0%	39	38.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NCKAP5	344148	genome.wustl.edu	37	2	133540153	133540153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207363.2	-1	validated	p.R1411C	0.000	29	0%	39	38.5%	0	-	benign(0.142)	deleterious(0)	neutral(0.457)	NULL
BAZ2B	29994	genome.wustl.edu	37	2	160176837	160176837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013450.2	-1	validated	p.A2149V	1.000	190	0%	153	42.5%	8	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
FIGN	55137	genome.wustl.edu	37	2	164467065	164467065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018086.2	-1	validated	p.V426A	0.896	268	0%	238	38.2%	0	-	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
SCN3A	6328	genome.wustl.edu	37	2	165947743	165947743	+	Silent	SNP	C	C	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006922.3	-1	reviewed	p.G1640	0.992	394	0%	371	15.4%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SCN1A	6323	genome.wustl.edu	37	2	166848233	166848233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006920.4	-1	reviewed	p.A1840V	1.000	375	0%	447	33.6%	0	-	possibly_damaging(0.884)	tolerated(0.13)	deleterious(0.597)	NULL
TTN	7273	genome.wustl.edu	37	2	179443407	179443407	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133378.4	-1	reviewed	p.W20185*	1.000	77	0%	53	34%	0	-	benign(0.001)	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179632509	179632509	+	Nonsense_Mutation	SNP	G	G	A	rs146572907	by1000genomes	TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133379.3	-1	reviewed	p.R3150*	1.000	339	0%	323	35.3%	0	-	-	-	-	HMMPfam_I-set,superfamily_SSF48726
ZC3H15	55854	genome.wustl.edu	37	2	187371444	187371444	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018471.2	+1	validated	p.D324A	1.000	117	0%	112	39.3%	5	0%	benign(0.032)	tolerated(0.1)	neutral(0.288)	NULL
ATIC	471	genome.wustl.edu	37	2	216203588	216203588	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426233	+1	known	p.R64*	0.733	184	0%	200	32%	68	41.1%	-	-	-	HMMPfam_AICARFT_IMPCHas,HMMSmart_SM00798,superfamily_AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
PID1	55022	genome.wustl.edu	37	2	229890532	229890532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017933.4	-1	validated	p.D188G	1.000	114	0%	99	30.3%	0	-	benign(0.328)	tolerated(0.13)	neutral(0.355)	superfamily_SSF50729
LOC100289441	100289441	genome.wustl.edu	37	3	9986125	9986125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342359.1	-1	model	p.Q25H	1.000	48	0%	92	34.8%	16	12.5%	-	-	-	NULL
LRRC3B	116135	genome.wustl.edu	37	3	26751671	26751671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052953.2	+1	provisional	p.V170M	1.000	108	0%	74	36.5%	0	-	benign(0.275)	deleterious(0)	deleterious(0.474)	superfamily_SSF52058
LRRFIP2	9209	genome.wustl.edu	37	3	37146969	37146969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006309.2	-1	validated	p.S254G	1.000	172	0%	167	40.7%	0	-	benign(0.098)	tolerated(0.37)	neutral(0.026)	HMMPfam_DUF2051
PLXNB1	5364	genome.wustl.edu	37	3	48456737	48456737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130082.1	-1	validated	p.V1272I	0.988	6	0.000	9	0.556	12	25%	possibly_damaging(0.849)	tolerated(0.09)	deleterious(0.623)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
CELSR3	1951	genome.wustl.edu	37	3	48694537	48694537	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001407.2	-1	reviewed	p.S1331	0.227	8	0.000	10	0.500	0	-	-	-	-	NULL
CDHR4	389118	genome.wustl.edu	37	3	49836314	49836314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007540.2	-1	provisional	p.P147H	0.847	14	0%	22	45.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DNAH1	25981	genome.wustl.edu	37	3	52400858	52400858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.T1907M	0.998	45	0%	26	23.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
GBE1	2632	genome.wustl.edu	37	3	81630361	81630361	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000158.3	-1	reviewed	p.G467D	0.997	126	0%	83	31.3%	2	50%	-	-	-	NULL
COL8A1	1295	genome.wustl.edu	37	3	99513797	99513797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001850.3	+1	reviewed	p.G351E	1.000	23	0%	15	46.7%	1	0%	unknown(0)	deleterious(0)	-	NULL
TRAT1	50852	genome.wustl.edu	37	3	108572633	108572633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016388.2	+1	validated	p.S157Y	0.003	156	0%	163	40.5%	0	-	possibly_damaging(0.745)	deleterious(0.01)	deleterious(0.679)	NULL
SIDT1	54847	genome.wustl.edu	37	3	113285274	113285274	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017699.2	+1	validated	p.A77V	0.951	203	0%	170	31.2%	0	-	probably_damaging(0.99)	tolerated(0.17)	deleterious(0.500)	NULL
NPHP3	27031	genome.wustl.edu	37	3	132403536	132403536	+	Silent	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153240.3	-1	reviewed	p.L1144	0.042	120	0%	92	30.4%	2	100%	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
ESYT3	83850	genome.wustl.edu	37	3	138191606	138191606	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031913.3	+1	validated	p.F714	0.998	66	0%	75	41.3%	1	0%	-	-	-	NULL
PIK3CB	5291	genome.wustl.edu	37	3	138461602	138461602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006219.1	-1	provisional	p.L140S	1.000	215	0.9%	189	30.2%	0	-	possibly_damaging(0.623)	deleterious(0)	deleterious(0.661)	superfamily_SSF54236
PHC3	80012	genome.wustl.edu	37	3	169820422	169820422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024947.3	-1	validated	p.R893H	0.999	168	0.6%	196	35.2%	10	20%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916944	178916944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.K111E	1.000	220	0%	219	37%	3	100%	probably_damaging(0.984)	deleterious(0.04)	deleterious(0.779)	superfamily_SSF54236
EIF4A2	1974	genome.wustl.edu	37	3	186505598	186505598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001967.3	+1	validated	p.G336W	1.000	113	0%	141	36.9%	81	37%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAM193A	8603	genome.wustl.edu	37	4	2692615	2692615	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003704.3	+1	validated	p.T616	0.086	85	0%	48	37.5%	3	33.3%	-	-	-	NULL
KIAA0232	9778	genome.wustl.edu	37	4	6826188	6826188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100590.1	+1	validated	p.P3H	0.998	164	0%	167	32.3%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
FBXL5	26234	genome.wustl.edu	37	4	15627095	15627095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012161.2	-1	reviewed	p.A544T	0.252	54	0%	78	34.6%	11	45.4%	benign(0)	tolerated(0.44)	neutral(0.013)	superfamily_RNI-like
GC	2638	genome.wustl.edu	37	4	72634136	72634136	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000583.2	-1	reviewed	p.Y48F	0.993	89	0%	75	37.3%	0	-	benign(0.367)	tolerated(0.77)	neutral(0.118)	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
ALB	213	genome.wustl.edu	37	4	74283930	74283930	+	Silent	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000511370	+1	known	p.*363R	0.743	261	0%	244	39.8%	0	-	-	-	-	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
MTHFD2L	441024	genome.wustl.edu	37	4	75065631	75065631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144978.1	+1	provisional	p.A191V	1.000	144	0%	168	33.3%	0	-	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	HMMPfam_THF_DHG_CYH_C,superfamily_NAD(P)-binding Rossmann-fold domains
NEIL3	55247	genome.wustl.edu	37	4	178243640	178243640	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018248.2	+1	validated	p.Q62*	0.000	453	0%	420	34.3%	6	33.3%	-	-	-	superfamily_N-terminal domain of MutM-like DNA repair proteins
LRP2BP	55805	genome.wustl.edu	37	4	186291888	186291888	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018409.3	-1	validated	p.G295D	1.000	92	0%	84	34.5%	2	100%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_HCP-like
ADAMTS16	170690	genome.wustl.edu	37	5	5209253	5209253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139056.2	+1	reviewed	p.E500V	0.992	321	0%	321	37.7%	0	-	probably_damaging(0.987)	tolerated(0.14)	deleterious(0.686)	NULL
TRIM23	373	genome.wustl.edu	37	5	64887675	64887675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001656.3	-1	reviewed	p.R549Q	1.000	195	0%	218	36.2%	0	-	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,PatternScan_ARF,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
CSNK1G3	1456	genome.wustl.edu	37	5	122927046	122927046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044723.1	+1	validated	p.A342T	1.000	206	0%	189	33.3%	3	66.6%	benign(0.001)	tolerated(0.32)	neutral(0.024)	NULL
SLC12A2	6558	genome.wustl.edu	37	5	127497359	127497359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001046.2	+1	validated	p.R828Q	1.000	54	0%	46	39.1%	18	0%	probably_damaging(0.973)	tolerated(0.37)	neutral(0.434)	NULL
IK	3550	genome.wustl.edu	37	5	140032592	140032593	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006083.3	+1	reviewed	p.R93fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RED_N
PCDHA13	56136	genome.wustl.edu	37	5	140263206	140263206	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018904.2	+1	reviewed	p.N451	1.000	51	0%	69	42%	0	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGC5	56097	genome.wustl.edu	37	5	140871069	140871069	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018929.2	+1	reviewed	p.D754	0.596	57	0%	67	44.8%	0	-	-	-	-	NULL
GABRG2	2566	genome.wustl.edu	37	5	161524689	161524689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198903.2	+1	reviewed	p.R125C	1.000	311	0%	389	39.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
ZNF184	7738	genome.wustl.edu	37	6	27420591	27420591	+	Silent	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007149.2	-1	validated	p.P249	0.991	621	0%	428	32.7%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
PRRC2A	7916	genome.wustl.edu	37	6	31600147	31600147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080686.2	+1	reviewed	p.G1233C	0.124	39	0%	33	24.2%	17	41.1%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
PRRC2A	7916	genome.wustl.edu	37	6	31600203	31600203	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080686.2	+1	reviewed	p.Q1251H	1.000	50	0%	51	35.3%	18	16.6%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
TNXB	7148	genome.wustl.edu	37	6	32049263	32049263	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019105.6	-1	reviewed	p.A1308	0.000	43	0%	35	34.3%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TAPBP	6892	genome.wustl.edu	37	6	33273011	33273011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003190.4	-1	reviewed	p.R208H	1.000	41	0%	35	37.1%	21	14.2%	probably_damaging(1)	tolerated(0.26)	deleterious(0.534)	NULL
TFAP2D	83741	genome.wustl.edu	37	6	50681798	50681798	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172238.3	+1	validated	p.H10	1.000	259	0%	236	36.9%	0	-	-	-	-	NULL
KCNQ5	56479	genome.wustl.edu	37	6	73751664	73751664	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019842.3	+1	reviewed	p.F165	0.998	536	0%	492	39.6%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CD109	135228	genome.wustl.edu	37	6	74521932	74521932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133493.3	+1	reviewed	p.A1236V	0.786	185	0%	221	32.6%	1	0%	benign(0.005)	tolerated(0.34)	neutral(0.023)	NULL
SYNCRIP	10492	genome.wustl.edu	37	6	86332381	86332381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006372.4	-1	validated	p.Y276C	1.000	374	0%	347	42.9%	12	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
MAP3K7	6885	genome.wustl.edu	37	6	91266269	91266269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145331.1	-1	reviewed	p.M186T	1.000	188	0%	194	33%	4	0%	possibly_damaging(0.88)	tolerated(0.19)	neutral(0.393)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RPA3	6119	genome.wustl.edu	37	7	7677605	7677605	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002947.3	-1	validated	e3-2	0.998	131	0%	124	37.9%	2	0%	-	-	-	-
ABCA13	154664	genome.wustl.edu	37	7	48313304	48313304	+	Silent	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.A1347	0.037	48	2.1%	58	27.6%	0	-	-	-	-	NULL
ABCB1	5243	genome.wustl.edu	37	7	87225099	87225099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000927.3	-1	reviewed	p.V34I	1.000	147	0%	187	41.2%	0	-	unknown(0)	deleterious(0)	-	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
ADAM22	53616	genome.wustl.edu	37	7	87759724	87759724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021723.2	+1	reviewed	p.V259I	0.992	197	0%	160	37.5%	0	-	benign(0.429)	tolerated(0.28)	neutral(0.171)	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
TRRAP	8295	genome.wustl.edu	37	7	98576479	98576479	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456197	+1	known	p.A2577V	0.996	42	0%	48	41.7%	0	-	-	-	-	HMMPfam_FAT,superfamily_ARM repeat,superfamily_Protein prenylyltransferase
FSCN3	29999	genome.wustl.edu	37	7	127235937	127235937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020369.1	+1	provisional	p.H241Y	0.010	114	0%	95	36.8%	0	-	benign(0.335)	tolerated(0.07)	neutral(0.424)	superfamily_Actin_crosslink
IRF5	3663	genome.wustl.edu	37	7	128587352	128587381	+	Splice_Site	DEL	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098627.2	+1	reviewed	e5+1	0.766:0.707:0.638:0.562:0.538:0.511:0.480:0.444:0.402:0.360:0.317:0.273:0.262:0.251:0.239:0.226:0.213:0.199:0.185:0.170:0.155:0.138:0.122:0.120:0.118:0.116:0.113:0.110:0.107:0.104	-	-	-	-	-	-	-	-	-	-
AHCYL2	23382	genome.wustl.edu	37	7	129028949	129028949	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000466924	+1	known	p.S83N	1.000	217	0%	208	38.9%	1	0%	-	-	-	NULL
C7orf45	136263	genome.wustl.edu	37	7	129847928	129847928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145268.3	+1	validated	p.V60I	0.839	304	0%	283	36.4%	0	-	benign(0.094)	tolerated(0.34)	neutral(0.030)	NULL
NUP205	23165	genome.wustl.edu	37	7	135304210	135304210	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015135.2	+1	validated	p.V1335L	0.999	105	0%	109	35.8%	7	28.5%	possibly_damaging(0.88)	tolerated(0.2)	neutral(0.392)	NULL
KIAA1147	57189	genome.wustl.edu	37	7	141385359	141385359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080392.1	-1	provisional	p.A149V	0.996	172	0%	148	15.5%	2	0%	possibly_damaging(0.568)	tolerated(0.37)	neutral(0.213)	HMMPfam_DUF2347
CUL1	8454	genome.wustl.edu	37	7	148451124	148451124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003592.2	+1	validated	p.G66V	1.000	86	0%	101	31.7%	5	0%	benign(0.028)	tolerated(0.08)	neutral(0.301)	HMMPfam_Cullin,superfamily_Cullin repeat
NOM1	64434	genome.wustl.edu	37	7	156759022	156759022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138400.1	+1	provisional	p.L698I	1.000	138	0%	179	38%	2	100%	probably_damaging(0.991)	tolerated(0.11)	deleterious(0.716)	HMMPfam_MA3,HMMSmart_MA3
SLC39A14	23516	genome.wustl.edu	37	8	22273681	22273681	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128431.2	+1	validated	p.G345	1.000	68	0%	61	31.1%	5	0%	-	-	-	HMMPfam_Zip
ADAM7	8756	genome.wustl.edu	37	8	24350032	24350032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380789	+1	known	p.C526Y	0.998	150	0%	199	41.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ADAM_CR,HMMSmart_SM00608
IDO2	169355	genome.wustl.edu	37	8	39873100	39873100	+	Silent	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194294.2	+1	validated	p.S414	0.000	228	0%	217	35.9%	0	-	-	-	-	HMMPfam_IDO
AGPAT6	137964	genome.wustl.edu	37	8	41476434	41476434	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178819.3	+1	validated	p.V400	0.989	33	0%	36	16.7%	43	16.2%	-	-	-	NULL
SNTG1	54212	genome.wustl.edu	37	8	51569577	51569577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018967.2	+1	reviewed	p.A320T	0.998	212	0%	172	14.5%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00233,superfamily_PH domain-like
MTFR1	9650	genome.wustl.edu	37	8	66605984	66605984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014637.3	+1	reviewed	p.A91S	0.996	55	0%	44	43.2%	3	33.3%	benign(0.007)	tolerated(0.5)	neutral(0.010)	HMMPfam_DUF729
PABPC1	26986	genome.wustl.edu	37	8	101721709	101721709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002568.3	-1	validated	p.Y408C	1.000	217	0%	189	17.5%	627	9.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FBXO32	114907	genome.wustl.edu	37	8	124526528	124526528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058229.2	-1	reviewed	p.I140V	1.000	51	0%	59	40.7%	2	0%	benign(0)	tolerated(0.94)	-	NULL
KCNQ3	3786	genome.wustl.edu	37	8	133196530	133196530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004519.2	-1	reviewed	p.R188W	1.000	202	0%	175	27.4%	0	-	probably_damaging(1)	tolerated(0.3)	deleterious(0.528)	HMMPfam_Ion_trans,superfamily_SSF81324
TG	7038	genome.wustl.edu	37	8	133918935	133918935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.P1213S	0.995	35	0%	26	30.8%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00211
ST3GAL1	6482	genome.wustl.edu	37	8	134478220	134478220	+	Silent	SNP	C	C	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003033.3	-1	reviewed	p.R140	1.000	64	0%	36	33.3%	0	-	-	-	-	HMMPfam_Glyco_transf_29
AK3	50808	genome.wustl.edu	37	9	4719209	4719211	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	GTT	GTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016282.2	-1	validated	p.Q123in_frame_del	0.999:0.774:0.958	-	-	-	-	-	-	-	-	-	HMMPfam_ADK,superfamily_SSF52540
CER1	9350	genome.wustl.edu	37	9	14720245	14720245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005454.2	-1	reviewed	p.T216M	0.531	145	0%	186	40.9%	0	-	benign(0.008)	tolerated(0.15)	neutral(0.241)	HMMPfam_DAN,HMMSmart_CT
TJP2	9414	genome.wustl.edu	37	9	71851948	71851948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004817.3	+1	reviewed	p.R692M	1.000	190	0.5%	240	35%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SH3-domain,HMMSmart_SM00072
TRPM6	140803	genome.wustl.edu	37	9	77353322	77353322	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017662.4	-1	reviewed	e36+1	1.000	152	0%	152	28.3%	0	-	-	-	-	-
PRUNE2	158471	genome.wustl.edu	37	9	79328552	79328552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015225.2	-1	validated	p.S281N	0.350	43	0%	22	31.8%	0	-	benign(0.042)	deleterious(0.01)	neutral(0.408)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79895123	79895123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033305.2	+1	reviewed	p.M958T	0.949	175	0.6%	145	31.7%	0	-	benign(0.001)	tolerated(0.4)	neutral(0.016)	NULL
FAM75C1	441452	genome.wustl.edu	37	9	90536629	90536629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145124.1	+1	validated	p.R603C	0.001	285	0%	288	41.7%	0	-	-	-	-	NULL
NOL8	55035	genome.wustl.edu	37	9	95063896	95063896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017948.5	-1	validated	p.A1038T	0.000	34	0%	42	38.1%	18	22.2%	benign(0.03)	tolerated(0.09)	neutral(0.298)	NULL
NUP214	8021	genome.wustl.edu	37	9	134004848	134004848	+	Silent	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005085.2	+1	reviewed	p.T192	0.000	187	0.5%	243	42%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
RAPGEF1	2889	genome.wustl.edu	37	9	134504617	134504617	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198679.1	-1	reviewed	p.D256	0.963	61	0%	59	44.1%	1	0%	-	-	-	NULL
FAM208B	54906	genome.wustl.edu	37	10	5790624	5790624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017782.4	+1	validated	p.V1747A	0.000	77	1.3%	73	19.2%	2	0%	benign(0.001)	tolerated(1)	-	NULL
FAM171A1	221061	genome.wustl.edu	37	10	15255183	15255184	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010924.1	-1	validated	p.G801fs	0.999:0.869	-	-	-	-	-	-	-	-	-	HMMPfam_UPF0560
SVIL	6840	genome.wustl.edu	37	10	29821797	29821797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021738.2	-1	reviewed	p.P500H	0.001	157	0%	126	36.5%	0	-	benign(0.029)	tolerated(0.14)	neutral(0.251)	NULL
NAMPTL	646309	genome.wustl.edu	37	10	36811915	36811915	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440465	-1	known	p.T416	1.000	138	0%	130	42.3%	0	-	-	-	-	HMMPfam_NAPRTase
BICC1	80114	genome.wustl.edu	37	10	60548140	60548140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080512.1	+1	reviewed	p.A186V	1.000	82	0%	98	35.7%	0	-	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
TTC18	118491	genome.wustl.edu	37	10	75101254	75101255	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145170.3	-1	validated	p.I232fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SYNPO2L	79933	genome.wustl.edu	37	10	75407268	75407268	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114133.1	-1	validated	p.P714	0.990	64	0%	47	44.7%	0	-	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130G	1.000	412	0%	378	37%	32	21.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89717778	89717778	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	e7+2	1.000	249	0%	283	37.5%	0	-	-	-	-	-
ACTA2	59	genome.wustl.edu	37	10	90699335	90699335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141945.1	-1	reviewed	p.D246G	0.998	91	0%	100	23%	246	0%	benign(0.013)	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
CNNM1	26507	genome.wustl.edu	37	10	101147663	101147663	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020348.2	+1	validated	p.D809	0.026	37	2.7%	40	35%	0	-	-	-	-	NULL
HPS6	79803	genome.wustl.edu	37	10	103825926	103825926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024747.4	+1	reviewed	p.R232L	0.000	38	0%	37	27%	5	0%	benign(0.007)	tolerated(0.72)	neutral(0.002)	NULL
FGFR2	2263	genome.wustl.edu	37	10	123274774	123274774	+	Missense_Mutation	SNP	A	A	G	rs121913474		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.C383R	1.000	141	0%	99	31.3%	3	33.3%	possibly_damaging(0.477)	deleterious(0.01)	deleterious(0.563)	NULL
MKI67	4288	genome.wustl.edu	37	10	129905111	129905112	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002417.4	-1	reviewed	p.E1664fs	0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_K167R
KNDC1	85442	genome.wustl.edu	37	10	135027554	135027554	+	Silent	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152643.6	+1	validated	p.L1535	0.140	30	0%	26	19.2%	0	-	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
TUBGCP2	10844	genome.wustl.edu	37	10	135106648	135106648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006659.2	-1	validated	p.V307M	0.997	12	0.000	8	0.625	7	57.1%	probably_damaging(0.964)	deleterious(0)	deleterious(0.851)	HMMPfam_Spc97_Spc98
OR52E2	119678	genome.wustl.edu	37	11	5080614	5080614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005164.2	-1	validated	p.K82E	0.979	193	0%	149	31.5%	0	-	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TRIM5	85363	genome.wustl.edu	37	11	5686429	5686429	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033034.2	-1	reviewed	p.D364	0.992	681	0.1%	487	11.7%	1	0%	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
SBF2	81846	genome.wustl.edu	37	11	9864283	9864283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030962.3	-1	reviewed	p.R1049G	1.000	144	0%	144	34%	0	-	benign(0.155)	deleterious(0)	neutral(0.458)	NULL
MICAL2	9645	genome.wustl.edu	37	11	12261110	12261110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014632.2	+1	provisional	p.R731Q	0.996	91	0%	67	52.2%	2	50%	possibly_damaging(0.451)	tolerated(0.47)	neutral(0.159)	NULL
RAG2	5897	genome.wustl.edu	37	11	36614412	36614412	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000536.3	-1	reviewed	p.T436S	1.000	116	0%	102	37.3%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_RAG2
RAG2	5897	genome.wustl.edu	37	11	36615270	36615270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000536.3	-1	reviewed	p.K150R	1.000	253	0%	216	13.4%	0	-	benign(0.001)	tolerated(0.07)	neutral(0.319)	HMMPfam_RAG2
CD82	3732	genome.wustl.edu	37	11	44639909	44639909	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002231.3	+1	reviewed	p.Y212	0.019	7	0.000	14	0.500	21	4.7%	-	-	-	superfamily_Tetraspanin,HMMPfam_Tetraspannin
OR8J1	219477	genome.wustl.edu	37	11	56127752	56127752	+	Silent	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005205.1	+1	provisional	p.T10	0.110	332	0%	382	35.1%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR5R1	219479	genome.wustl.edu	37	11	56185349	56185349	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004744.1	-1	provisional	p.Y120	0.998	166	0%	171	35.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
ZDHHC5	25921	genome.wustl.edu	37	11	57455981	57455981	+	Silent	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015457.2	+1	validated	p.A76	1.000	106	0%	89	34.8%	3	0%	-	-	-	NULL
AHNAK	79026	genome.wustl.edu	37	11	62300112	62300112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.R593G	0.040	94	0%	83	10.8%	0	-	benign(0.13)	tolerated(0.37)	neutral(0.030)	NULL
FERMT3	83706	genome.wustl.edu	37	11	63974956	63974956	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178443.2	+1	reviewed	p.S40	0.524	33	0%	30	46.7%	0	-	-	-	-	NULL
SPDYC	387778	genome.wustl.edu	37	11	64940484	64940484	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008778.1	+1	provisional	p.R282	0.034	69	1.4%	64	54.7%	0	-	-	-	-	NULL
ODZ4	26011	genome.wustl.edu	37	11	78443601	78443601	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098816.2	-1	validated	p.G966	0.344	65	0%	31	22.6%	0	-	-	-	-	NULL
STT3A	3703	genome.wustl.edu	37	11	125478178	125478178	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152713.3	+1	validated	p.L319	1.000	231	0%	208	32.2%	12	0%	-	-	-	HMMPfam_STT3
NFRKB	4798	genome.wustl.edu	37	11	129754722	129754722	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006165.3	-1	validated	p.P245	0.987	24	0%	30	56.7%	0	-	-	-	-	NULL
PRDM10	56980	genome.wustl.edu	37	11	129805068	129805068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020228.2	-1	reviewed	p.R362H	1.000	285	0%	249	33.3%	2	50%	possibly_damaging(0.926)	deleterious(0.01)	deleterious(0.780)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF384	171017	genome.wustl.edu	37	12	6778258	6778258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135734.1	-1	reviewed	p.T424M	1.000	76	0%	75	25.3%	11	45.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CD4	920	genome.wustl.edu	37	12	6923437	6923439	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000616.3	+1	validated	p.E117in_frame_del	0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
LRRK2	120892	genome.wustl.edu	37	12	40702483	40702483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198578.3	+1	reviewed	p.V1392L	1.000	105	0%	112	30.4%	2	0%	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_Miro,superfamily_SSF52540
CSRNP2	81566	genome.wustl.edu	37	12	51458139	51458141	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030809.1	-1	provisional	p.E340in_frame_del	1.000:1.000:0.995	-	-	-	-	-	-	-	-	-	NULL
SLC26A10	65012	genome.wustl.edu	37	12	58014175	58014175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133489.2	+1	validated	p.T58A	1.000	631	0%	502	12.7%	0	-	probably_damaging(0.988)	tolerated(0.23)	deleterious(0.479)	NULL
CAND1	55832	genome.wustl.edu	37	12	67700273	67700273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018448.3	+1	validated	p.C942Y	1.000	108	0%	102	40.2%	11	0%	possibly_damaging(0.952)	tolerated(0.06)	deleterious(0.718)	superfamily_ARM repeat
BEST3	144453	genome.wustl.edu	37	12	70070977	70070977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032735.2	-1	validated	p.P233S	1.000	133	0%	80	43.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Bestrophin
UTP20	27340	genome.wustl.edu	37	12	101703551	101703551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014503.2	+1	validated	p.R722H	1.000	200	0%	160	12.5%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_ARM repeat
C12orf51	283450	genome.wustl.edu	37	12	112617164	112617164	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109662.2	-1	validated	p.T3253	0.752	10	0%	15	53.3%	0	-	-	-	-	NULL
CLIP1	6249	genome.wustl.edu	37	12	122848583	122848583	+	Silent	SNP	G	G	A	rs150042847	by1000genomes	TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002956.2	-1	validated	p.G243	0.169	67	0%	58	32.8%	1	0%	-	-	-	HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Cap-Gly domain
GPR133	283383	genome.wustl.edu	37	12	131466566	131466566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198827.3	+1	validated	p.R150W	0.990	95	0%	87	31%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Concanavalin A-like lectins/glucanases
PABPC3	5042	genome.wustl.edu	37	13	25671873	25671873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030979.2	+1	validated	p.R513C	1.000	94	0%	101	36.6%	0	-	benign(0.082)	deleterious(0)	neutral(0.451)	superfamily_PABC (PABP) domain
RCBTB2	1102	genome.wustl.edu	37	13	49076986	49076986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001268.2	-1	reviewed	p.V331M	1.000	61	0%	29	48.3%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_RCC1/BLIP-II
GPC5	2262	genome.wustl.edu	37	13	92346023	92346023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004466.4	+1	reviewed	p.S303L	1.000	103	0%	133	41.4%	0	-	benign(0.378)	tolerated(0.21)	neutral(0.164)	HMMPfam_Glypican
FARP1	10160	genome.wustl.edu	37	13	99020449	99020449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005766.2	+1	reviewed	p.R133M	1.000	224	0.4%	193	39.4%	14	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295
WDHD1	11169	genome.wustl.edu	37	14	55493501	55493501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007086.2	-1	reviewed	p.P2H	1.000	99	1%	62	38.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
NEK9	91754	genome.wustl.edu	37	14	75553935	75553935	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033116.4	-1	validated	e21-2	0.997	75	0%	65	40%	0	-	-	-	-	-
CEP128	145508	genome.wustl.edu	37	14	81382836	81382836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152446.3	-1	validated	p.P19Q	0.823	209	0%	189	34.4%	0	-	benign(0.079)	tolerated(0.18)	neutral(0.061)	NULL
IGHV5-51	28388	genome.wustl.edu	37	14	107035150	107035150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390626	-1	known	p.A5T	0.001	35	0%	27	29.6%	2	0%	benign(0.021)	tolerated(0.2)	neutral(0.050)	NULL
ENSG00000215407	0	genome.wustl.edu	37	15	20444691	20444691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400226	-1	known	p.M485I	1.000	166	0%	90	12.2%	0	-	-	-	-	HMMSmart_SM00228,superfamily_PDZ domain-like
C15orf2	23742	genome.wustl.edu	37	15	24921560	24921560	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018958.2	+1	reviewed	p.S182	0.000	52	0%	46	43.5%	0	-	-	-	-	NULL
ADAMTSL3	57188	genome.wustl.edu	37	15	84639294	84639294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207517.2	+1	validated	p.A850V	0.995	337	0%	399	31.8%	0	-	benign(0.001)	tolerated(0.39)	neutral(0.016)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
SLX4	84464	genome.wustl.edu	37	16	3641251	3641251	+	Missense_Mutation	SNP	C	C	A	rs113965715		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032444.2	-1	provisional	p.E796D	0.059	40	0%	50	42%	0	-	benign(0.014)	tolerated(0.05)	neutral(0.346)	NULL
DCTN5	84516	genome.wustl.edu	37	16	23652886	23652888	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032486.2	+1	provisional	p.N9in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ZNF423	23090	genome.wustl.edu	37	16	49559331	49559331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015069.2	-1	reviewed	p.I1218V	1.000	45	0%	34	32.4%	3	33.3%	benign(0.428)	deleterious(0.03)	deleterious(0.504)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
DUS2L	54920	genome.wustl.edu	37	16	68112416	68112416	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017803.3	+1	provisional	p.T413	0.774	35	0%	58	44.8%	9	22.2%	-	-	-	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
SMPD3	55512	genome.wustl.edu	37	16	68395533	68395533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018667.3	-1	validated	p.E613D	1.000	23	0%	20	55%	4	0%	probably_damaging(0.987)	tolerated(0.3)	neutral(0.465)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
PLCG2	5336	genome.wustl.edu	37	16	81990347	81990347	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002661.2	+1	validated	p.R1206	1.000	96	0%	74	23%	15	60%	-	-	-	NULL
OR3A2	4995	genome.wustl.edu	37	17	3181760	3181760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002551.3	-1	validated	p.S157F	0.981	372	0%	317	34.7%	0	-	possibly_damaging(0.927)	deleterious(0)	deleterious(0.820)	HMMPfam_7tm_1,superfamily_SSF81321
C17orf85	55421	genome.wustl.edu	37	17	3725323	3725323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114118.1	-1	provisional	p.A274T	1.000	290	0%	250	29.2%	7	71.4%	probably_damaging(0.982)	tolerated(0.08)	deleterious(0.726)	NULL
USP6	9098	genome.wustl.edu	37	17	5072277	5072277	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004505.2	+1	validated	p.S1148	0.002	121	0%	115	34.8%	0	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
DVL2	1856	genome.wustl.edu	37	17	7132917	7132917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004422.2	-1	reviewed	p.R246H	1.000	41	0%	27	25.9%	3	0%	probably_damaging(0.997)	tolerated(0.16)	deleterious(0.526)	superfamily_PDZ domain-like
CHRNB1	1140	genome.wustl.edu	37	17	7358672	7358672	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000747.2	+1	reviewed	p.E372Q	0.983	110	0%	67	46.3%	0	-	benign(0.062)	tolerated(0.34)	neutral(0.027)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
WDR16	146845	genome.wustl.edu	37	17	9511492	9511492	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145054.4	+1	validated	p.A270	0.257	39	0%	66	40.9%	0	-	-	-	-	superfamily_WD40 repeat-like
ARHGAP44	9912	genome.wustl.edu	37	17	12888090	12888090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014859.4	+1	validated	p.P728S	1.000	45	0%	37	40.5%	1	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
CACNB1	782	genome.wustl.edu	37	17	37347759	37347759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000723.3	-1	reviewed	p.R87C	1.000	89	0%	76	27.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SH3-domain
ERBB2	2064	genome.wustl.edu	37	17	37864650	37864650	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004448.2	+1	reviewed	p.I101S	1.000	56	0%	59	25.4%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Recep_L_domain,superfamily_L domain-like
KRT222	125113	genome.wustl.edu	37	17	38813964	38813964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152349.2	-1	validated	p.K162R	0.991	112	0%	143	11.2%	0	-	probably_damaging(0.989)	deleterious(0.02)	deleterious(0.823)	NULL
C17orf57	124989	genome.wustl.edu	37	17	45487056	45487056	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152347.3	+1	provisional	p.N759	0.030	587	0.2%	590	36.9%	0	-	-	-	-	superfamily_EF-hand
TBKBP1	9755	genome.wustl.edu	37	17	45777026	45777026	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014726.2	+1	validated	p.R279*	1.000	159	0%	127	40.2%	3	33.3%	-	-	-	NULL
SNX11	29916	genome.wustl.edu	37	17	46189967	46189967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013323.2	+1	reviewed	p.R25Q	0.999	506	0%	384	37.5%	1	0%	probably_damaging(0.976)	tolerated(0.2)	neutral(0.467)	HMMPfam_PX,HMMSmart_PX,superfamily_PX
MIR10A	406902	genome.wustl.edu	37	17	46657308	46657310	+	RNA	DEL	TCT	TCT	-	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385043	-1	known	NULL	1.000:1.000	-	-	-	-	-	-	-	-	-	-
BRIP1	83990	genome.wustl.edu	37	17	59934534	59934536	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032043.1	-1	reviewed	p.C88in_frame_del	0.892:0.997:0.999	-	-	-	-	-	-	-	-	-	HMMSmart_SM00488,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
RPTOR	57521	genome.wustl.edu	37	17	78704415	78704415	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020761.2	+1	reviewed	p.S188N	1.000	49	0%	69	37.7%	0	-	benign(0.005)	tolerated(0.13)	neutral(0.253)	NULL
DSC3	1825	genome.wustl.edu	37	18	28609519	28609519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001941.3	-1	reviewed	p.M144V	0.999	304	0%	262	12.6%	0	-	benign(0.001)	tolerated(0.65)	neutral(0.003)	HMMPfam_Cadherin,superfamily_Cadherin-like
MCART2	147407	genome.wustl.edu	37	18	29340344	29340344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034172.2	-1	validated	p.T94M	0.999	170	0%	180	31.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
SLC39A6	25800	genome.wustl.edu	37	18	33692496	33692496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012319.3	-1	validated	p.A631V	1.000	268	0%	250	11.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Zip
FHOD3	80206	genome.wustl.edu	37	18	34320732	34320732	+	Silent	SNP	C	C	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025135.2	+1	validated	p.S1055	0.997	87	0%	91	38.5%	2	0%	-	-	-	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
SMAD7	4092	genome.wustl.edu	37	18	46448258	46448258	+	Silent	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005904.2	-1	provisional	p.P255	0.999	73	0%	53	45.3%	0	-	-	-	-	HMMPfam_MH2,superfamily_SMAD_FHA
RTTN	25914	genome.wustl.edu	37	18	67812951	67812951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173630.3	-1	validated	p.R793H	1.000	298	0%	397	31%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ARM repeat
FBN3	84467	genome.wustl.edu	37	19	8167628	8167628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032447.3	-1	reviewed	p.A1690V	1.000	68	0%	55	36.4%	0	-	possibly_damaging(0.659)	tolerated(0.25)	neutral(0.270)	HMMPfam_TB,superfamily_TB module/8-cys domain
ZNF177	7730	genome.wustl.edu	37	19	9492334	9492334	+	Missense_Mutation	SNP	G	G	A	rs140200535	by1000genomes	TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003451.2	+1	validated	p.V283M	0.054	298	0.7%	316	42.7%	4	50%	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ICAM5	7087	genome.wustl.edu	37	19	10403523	10403523	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003259.3	+1	reviewed	p.S399	0.765	15	0%	14	42.9%	1	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
ZNF491	126069	genome.wustl.edu	37	19	11917795	11917795	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152356.3	+1	validated	p.R343*	0.004	138	0.7%	163	34.4%	1	100%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC440518	440518	genome.wustl.edu	37	19	22785987	22785987	+	RNA	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_041921.2	+1	model	NULL	0.002	17	0%	15	40%	0	-	-	-	-	-
LSM14A	26065	genome.wustl.edu	37	19	34706512	34706513	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114093.1	+1	validated	p.K243fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SPTBN4	57731	genome.wustl.edu	37	19	41066292	41066292	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020971.2	+1	reviewed	p.G1966	1.000	36	0%	38	31.6%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
EXOSC5	56915	genome.wustl.edu	37	19	41897771	41897771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020158.3	-1	validated	p.L120P	1.000	53	0%	35	42.9%	26	34.6%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_RNase_PH,superfamily_Ribosomal_S5_D2-typ_fold
ARHGAP35	2909	genome.wustl.edu	37	19	47503727	47503728	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.F1428fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00324,superfamily_GTPase activation domain GAP
SIGLEC16	400709	genome.wustl.edu	37	19	50473392	50473393	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000417280	+1	known	p.G136fs	0.023:0.025	-	-	-	-	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
MYH14	79784	genome.wustl.edu	37	19	50755952	50755952	+	Silent	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077186.1	+1	reviewed	p.N629	0.205	27	0.000	9	0.556	10	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF320	162967	genome.wustl.edu	37	19	53384492	53384492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207333.2	-1	validated	p.T296I	1.000	533	0%	377	37.1%	7	57.1%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	superfamily_SSF57667
PTPRH	5794	genome.wustl.edu	37	19	55697006	55697006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002842.3	-1	validated	p.V976M	0.035	25	0%	21	38.1%	0	-	possibly_damaging(0.915)	deleterious(0.03)	deleterious(0.731)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
NLRP5	126206	genome.wustl.edu	37	19	56539846	56539846	+	Silent	SNP	C	C	T	rs149649207	by1000genomes	TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153447.4	+1	reviewed	p.S749	0.000	140	0%	123	33.3%	0	-	-	-	-	superfamily_SSF52047
ZNF71	58491	genome.wustl.edu	37	19	57132960	57132960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021216.4	+1	validated	p.C102Y	0.000	47	0%	47	21.3%	0	-	possibly_damaging(0.49)	tolerated(1)	neutral(0.163)	NULL
ZNF835	90485	genome.wustl.edu	37	19	57176341	57176341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005850.1	-1	provisional	p.D98N	0.000	23	0%	25	44%	0	-	benign(0.006)	deleterious(0.04)	neutral(0.349)	NULL
IDH3B	3420	genome.wustl.edu	37	20	2640405	2640405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006899.2	-1	reviewed	p.R317K	1.000	179	0%	152	40.8%	42	33.3%	benign(0.001)	tolerated(1)	-	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
PANK2	80025	genome.wustl.edu	37	20	3888790	3888790	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153638.2	+1	reviewed	p.L282	1.000	106	0%	97	33%	0	-	-	-	-	HMMPfam_Fumble,superfamily_Actin-like ATPase domain
RBM12	10137	genome.wustl.edu	37	20	34240548	34240548	+	Silent	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006047.4	-1	reviewed	p.E899	1.000	144	0%	124	38.7%	13	15.3%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
PLTP	5360	genome.wustl.edu	37	20	44538177	44538177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006227.2	-1	reviewed	p.A155T	0.731	60	0%	52	38.5%	11	0%	possibly_damaging(0.942)	tolerated(0.21)	neutral(0.431)	HMMPfam_LBP_BPI_CETP,HMMSmart_SM00328,superfamily_Bactericidal permeability-increasing protein BPI
PCIF1	63935	genome.wustl.edu	37	20	44567661	44567661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022104.3	+1	validated	p.S8N	1.000	16	0%	18	38.9%	8	37.5%	benign(0.184)	deleterious(0.02)	neutral(0.400)	NULL
ZNFX1	57169	genome.wustl.edu	37	20	47863983	47863983	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021035.2	-1	validated	p.C1860S	1.000	85	0%	88	52.3%	9	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RAE1	8480	genome.wustl.edu	37	20	55948793	55948793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001015885.1	+1	reviewed	p.A275V	1.000	330	0%	288	36.1%	12	8.3%	possibly_damaging(0.582)	deleterious(0.02)	deleterious(0.583)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ZBP1	81030	genome.wustl.edu	37	20	56191173	56191174	+	Frame_Shift_Del	DEL	AG	AG	-	rs68090526	byCluster;by1000genomes	TCGA-AX-A064-01	TCGA-AX-A064-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000432548	-1	known	p.L129fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
EDN3	1908	genome.wustl.edu	37	20	57899426	57899426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000114.2	+1	reviewed	p.L210P	0.000	178	0%	166	38%	0	-	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
TAF4	6874	genome.wustl.edu	37	20	60589727	60589729	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003185.3	-1	reviewed	p.L466in_frame_del	0.996:0.988:0.991	-	-	-	-	-	-	-	-	-	NULL
BTG3	10950	genome.wustl.edu	37	21	18966451	18966451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130914.1	-1	reviewed	p.R284L	1.000	148	0%	149	38.3%	59	35.5%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
CLDN8	9073	genome.wustl.edu	37	21	31587911	31587911	+	Silent	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199328.2	-1	reviewed	p.N111	0.005	105	0%	118	38.1%	0	-	-	-	-	HMMPfam_PMP22_Claudin
ETS2	2114	genome.wustl.edu	37	21	40190562	40190562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005239.4	+1	validated	p.N268S	0.000	197	0%	275	38.5%	43	13.9%	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
DSCAM	1826	genome.wustl.edu	37	21	41648130	41648130	+	Silent	SNP	C	C	T	rs139291190	by1000genomes	TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.S750	0.239	49	0%	68	41.2%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
CCT8L2	150160	genome.wustl.edu	37	22	17072258	17072258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014406.4	-1	validated	p.G395S	0.854	43	0%	34	47.1%	0	-	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL-intermediate domain like
TSSK2	23617	genome.wustl.edu	37	22	19119522	19119522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053006.4	+1	validated	p.V204M	1.000	66	0%	65	40%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SEPT5	5413	genome.wustl.edu	37	22	19708324	19708324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002688.4	+1	reviewed	p.V217I	0.963	8	0.000	7	0.857	0	-	benign(0.005)	tolerated(1)	-	HMMPfam_Septin,superfamily_SSF52540
GNB1L	54584	genome.wustl.edu	37	22	19789664	19789664	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053004.2	-1	validated	p.Q198*	0.869	5	0.000	11	0.455	6	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
LOC100133224	100133224	genome.wustl.edu	37	22	31552503	31552503	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716151.1	-1	model	p.C188	0.988	53	0%	54	40.7%	0	-	-	-	-	HMMPfam_LSM,HMMSmart_SM00651,superfamily_Sm-like ribonucleoproteins
SGSM3	27352	genome.wustl.edu	37	22	40803251	40803251	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015705.4	+1	validated	p.T429	0.992	19	0%	20	25%	22	40.9%	-	-	-	NULL
TUBGCP6	85378	genome.wustl.edu	37	22	50662687	50662687	+	Splice_Site	SNP	T	T	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020461.3	-1	reviewed	e13-2	0.997	26	0%	31	29%	0	-	-	-	-	-
MXRA5	25878	genome.wustl.edu	37	X	3228929	3228929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.P2439S	0.028	42	0%	27	40.7%	2	0%	benign(0.001)	tolerated(0.27)	neutral(0.034)	NULL
GPM6B	2824	genome.wustl.edu	37	X	13798043	13798043	+	Silent	SNP	G	G	T	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000472735	-1	known	p.R53S	0.000	444	0%	260	38.8%	0	-	-	-	-	HMMPfam_Myelin_PLP
SCML2	10389	genome.wustl.edu	37	X	18342125	18342125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006089.2	-1	validated	p.T84M	0.998	222	0%	203	38.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
GRIPAP1	56850	genome.wustl.edu	37	X	48855906	48855906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020137.3	-1	reviewed	p.L18P	1.000	156	0%	117	40.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ZXDB	158586	genome.wustl.edu	37	X	57620268	57620268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007157.3	+1	validated	p.S596N	0.999	133	0%	134	41.8%	0	-	possibly_damaging(0.484)	deleterious(0.01)	deleterious(0.566)	NULL
HEPH	9843	genome.wustl.edu	37	X	65423396	65423396	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138737.3	+1	reviewed	p.W759*	0.999	196	0%	156	32.1%	3	0%	-	-	-	superfamily_Cupredoxins
TAF1	6872	genome.wustl.edu	37	X	70607122	70607122	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004606.3	+1	reviewed	p.N766K	1.000	275	0%	234	32.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CDX4	1046	genome.wustl.edu	37	X	72674213	72674213	+	Splice_Site	SNP	A	A	G	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005193.1	+1	provisional	e3-2	1.000	73	0%	73	32.9%	0	-	-	-	-	-
PCDH11X	27328	genome.wustl.edu	37	X	91133855	91133855	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032968.3	+1	reviewed	p.K872N	1.000	182	0%	190	42.6%	0	-	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	HMMPfam_Protocadherin
ZIC3	7547	genome.wustl.edu	37	X	136651209	136651209	+	Silent	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003413.3	+1	reviewed	p.L403	1.000	80	0%	82	35.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC392555	392555	genome.wustl.edu	37	X	141261383	141261383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343852.1	-1	model	p.Q208H	0.000	134	0%	128	39.1%	0	-	-	-	-	HMMPfam_MAGE
CD99L2	83692	genome.wustl.edu	37	X	149963706	149963706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A064-01	TCGA-AX-A064-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031462.3	-1	reviewed	p.R135C	0.007	183	0%	188	35.6%	2	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
