Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
THRAP3	9967	genome.wustl.edu	37	1	36748231	36748231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005119.3	+1	validated	p.R23C	1.000	65	0%	65	23.1%	-	-	unknown(0)	deleterious(0)	-	NULL
KCNA10	3744	genome.wustl.edu	37	1	111060344	111060344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005549.2	-1	reviewed	p.R356C	1.000	31	0%	28	21.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_SSF81324
WDR3	10885	genome.wustl.edu	37	1	118497226	118497226	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006784.2	+1	reviewed	p.I795M	1.000	100	0%	50	54%	-	-	benign(0.042)	tolerated(0.17)	neutral(0.061)	HMMPfam_Utp12
ABL2	27	genome.wustl.edu	37	1	179077589	179077589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007314.3	-1	reviewed	p.T938N	1.000	82	0%	87	12.6%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
CFHR4	10877	genome.wustl.edu	37	1	196881909	196881909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006684.2	+1	validated	p.F99S	0.086	35	0%	32	53.1%	-	-	probably_damaging(0.994)	tolerated(0.4)	neutral(0.468)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
PTPRC	5788	genome.wustl.edu	37	1	198668743	198668743	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002838.3	+1	reviewed	p.T115S	0.002	35	0%	36	11.1%	-	-	benign(0.156)	tolerated(0.16)	neutral(0.073)	NULL
CACNA1S	779	genome.wustl.edu	37	1	201027535	201027535	+	Splice_Site	SNP	C	C	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000069.2	-1	reviewed	e28+1	1.000	42	0%	66	13.6%	-	-	-	-	-	-
RGPD8	727851	genome.wustl.edu	37	2	113145718	113145718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000302558	-1	known	p.E1602K	0.009	65	0%	49	24.5%	-	-	possibly_damaging(0.873)	tolerated(0.23)	neutral(0.381)	NULL
ABCB6	10058	genome.wustl.edu	37	2	220079780	220079780	+	Silent	SNP	G	G	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000295750	-1	known	p.P241L	1.000	89	0%	69	15.9%	-	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
WNT7A	7476	genome.wustl.edu	37	3	13916619	13916619	+	Silent	SNP	G	G	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004625.3	-1	reviewed	p.I41	1.000	30	0%	23	43.5%	-	-	-	-	-	HMMPfam_wnt,HMMSmart_SM00097
DHX30	22907	genome.wustl.edu	37	3	47890039	47890039	+	Missense_Mutation	SNP	C	C	G	rs111860479		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138615.2	+1	reviewed	p.I858M	0.549	60	0%	44	25%	-	-	possibly_damaging(0.576)	tolerated(0.21)	neutral(0.241)	HMMPfam_HA2,superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAJC13	23317	genome.wustl.edu	37	3	132247129	132247129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015268.3	+1	validated	p.V2160I	1.000	67	0%	65	29.2%	-	-	possibly_damaging(0.948)	tolerated(0.15)	deleterious(0.632)	superfamily_ARM repeat
TOPBP1	11073	genome.wustl.edu	37	3	133356971	133356971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007027.3	-1	reviewed	p.N757D	0.006	80	0%	95	34.7%	-	-	benign(0.011)	tolerated(0.61)	neutral(0.005)	superfamily_BRCT domain
ALPK1	80216	genome.wustl.edu	37	4	113353463	113353463	+	Silent	SNP	C	C	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000504176	+1	known	p.Q10*	0.299	36	0%	39	23.1%	-	-	-	-	-	NULL
FBXW7	55294	genome.wustl.edu	37	4	153249510	153249510	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033632.2	-1	reviewed	p.G423V	1.000	81	0%	69	37.7%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
GPR98	84059	genome.wustl.edu	37	5	89943434	89943435	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032119.3	+1	reviewed	p.D1051fs	0.000:0.030	-	-	-	-	-	-	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
POU4F3	5459	genome.wustl.edu	37	5	145719176	145719176	+	Silent	SNP	G	G	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002700.2	+1	reviewed	p.A62	0.998	37	0%	49	34.7%	-	-	-	-	-	NULL
HLA-B	3106	genome.wustl.edu	37	6	31324431	31324432	+	In_Frame_Ins	INS	-	-	GGG	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428231	-1	known	p.116in_frame_insP	0.009:0.019	-	-	-	-	-	-	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56483447	56483447	+	Silent	SNP	A	A	G	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001723.5	-1	reviewed	p.L1795	0.886	82	0%	57	36.8%	-	-	-	-	-	NULL
ZNF451	26036	genome.wustl.edu	37	6	57017052	57017052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031623.2	+1	validated	p.C929Y	1.000	70	0%	44	40.9%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
C6orf170	221322	genome.wustl.edu	37	6	121447533	121447533	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152730.4	-1	validated	p.E992Q	0.997	35	0%	40	50%	-	-	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	NULL
HECW1	23072	genome.wustl.edu	37	7	43351602	43351602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015052.3	+1	validated	p.I90V	1.000	52	0%	41	14.6%	-	-	possibly_damaging(0.916)	deleterious(0.01)	deleterious(0.772)	NULL
EPO	2056	genome.wustl.edu	37	7	100320703	100320703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000799.2	+1	reviewed	p.R177W	0.999	35	0%	26	42.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_EPO_TPO,superfamily_4_helix_cytokine
MYOM2	9172	genome.wustl.edu	37	8	2057285	2057285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003970.2	+1	validated	p.R1048Q	0.995	61	0%	37	54.1%	-	-	benign(0.175)	tolerated(0.3)	neutral(0.044)	NULL
LRP12	29967	genome.wustl.edu	37	8	105511574	105511574	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013437.4	-1	reviewed	p.R149T	0.886	74	0%	91	26.4%	-	-	possibly_damaging(0.736)	tolerated(0.34)	neutral(0.292)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
COL22A1	169044	genome.wustl.edu	37	8	139895384	139895384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152888.1	-1	validated	p.G11D	0.000	27	0%	25	28%	-	-	unknown(0)	deleterious(0)	-	NULL
MPDZ	8777	genome.wustl.edu	37	9	13150534	13150534	+	Silent	SNP	C	C	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433359	-1	known	p.E140K	1.000	74	0%	41	63.4%	-	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
SHC3	53358	genome.wustl.edu	37	9	91652909	91652909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016848.4	-1	validated	p.T552M	1.000	10	0%	19	36.8%	-	-	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
XPA	7507	genome.wustl.edu	37	9	100449449	100449449	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000380.3	-1	reviewed	p.L162V	1.000	83	0%	92	31.5%	-	-	benign(0.187)	deleterious(0)	neutral(0.462)	HMMPfam_XPA_C,superfamily_Putativ_DNA_bind
ANAPC2	29882	genome.wustl.edu	37	9	140079477	140079477	+	Silent	SNP	G	G	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013366.3	-1	reviewed	p.P312	0.001	17	0%	18	61.1%	-	-	-	-	-	NULL
BICC1	80114	genome.wustl.edu	37	10	60577360	60577360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080512.1	+1	reviewed	p.I858V	1.000	53	0%	56	33.9%	-	-	benign(0.094)	tolerated(0.33)	neutral(0.031)	NULL
TLX1NB	100038246	genome.wustl.edu	37	10	102849421	102849421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085398.1	-1	validated	p.H81R	0.262	27	0%	26	26.9%	-	-	-	-	-	NULL
SCGB1D1	10648	genome.wustl.edu	37	11	61959695	61959695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006552.1	+1	reviewed	p.V75L	0.000	57	0%	54	42.6%	-	-	benign(0)	tolerated(0.88)	-	HMMPfam_Uteroglobin,HMMSmart_UTG,superfamily_Secretoglobin
PIWIL4	143689	genome.wustl.edu	37	11	94351149	94351149	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152431.2	+1	validated	p.H682D	1.000	32	0%	31	48.4%	-	-	benign(0.019)	tolerated(0.55)	neutral(0.008)	HMMPfam_Piwi,superfamily_Ribonuclease H-like
C1RL	51279	genome.wustl.edu	37	12	7249442	7249442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016546.2	-1	validated	p.S337G	0.018	53	0%	50	36%	-	-	benign(0.003)	deleterious(0.02)	neutral(0.383)	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ITPR2	3709	genome.wustl.edu	37	12	26639102	26639102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002223.2	-1	validated	p.A1916T	0.999	155	0%	119	28.6%	-	-	benign(0)	tolerated(0.68)	neutral(0.002)	HMMPfam_RIH_assoc
PTPN11	5781	genome.wustl.edu	37	12	112926249	112926249	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002834.3	+1	reviewed	p.A461G	1.000	63	0%	70	37.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
MED13L	23389	genome.wustl.edu	37	12	116429385	116429385	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015335.3	-1	validated	p.D1125V	1.000	38	0%	37	48.6%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TMEM132B	114795	genome.wustl.edu	37	12	126003992	126003992	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052907.2	+1	provisional	p.G367R	0.987	70	0%	47	40.4%	-	-	benign(0.244)	tolerated(0.52)	neutral(0.033)	NULL
HIF1A	3091	genome.wustl.edu	37	14	62193491	62193491	+	Silent	SNP	A	A	G	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001530.3	+1	validated	p.L175	0.971	70	0%	54	46.3%	-	-	-	-	-	NULL
SYNE2	23224	genome.wustl.edu	37	14	64519073	64519073	+	Silent	SNP	A	A	G	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182914.2	+1	reviewed	p.Q2814	0.020	20	0%	31	35.5%	-	-	-	-	-	HMMSmart_SPEC,superfamily_Spectrin
GOLGA5	9950	genome.wustl.edu	37	14	93282627	93282627	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005113.2	+1	reviewed	p.G452fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_Prefoldin,HMMPfam_Golgin_A5
MYEF2	50804	genome.wustl.edu	37	15	48446043	48446043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016132.3	-1	validated	p.I345V	1.000	37	0%	38	36.8%	-	-	probably_damaging(0.97)	tolerated(0.1)	deleterious(0.699)	superfamily_RNA-binding domain RBD
C15orf26	161502	genome.wustl.edu	37	15	81426729	81426729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173528.2	+1	predicted	p.Y20C	0.999	37	0%	30	50%	-	-	benign(0.026)	tolerated(0.5)	neutral(0.011)	NULL
SMG1	23049	genome.wustl.edu	37	16	18846262	18846262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015092.4	-1	reviewed	p.S2761Y	0.997	60	0%	115	19.1%	-	-	possibly_damaging(0.745)	deleterious(0.04)	deleterious(0.623)	NULL
PRMT7	54496	genome.wustl.edu	37	16	68386282	68386282	+	Silent	SNP	C	C	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019023.2	+1	validated	p.A515	0.999	31	0%	47	29.8%	-	-	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ABR	29	genome.wustl.edu	37	17	953369	953369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021962.2	-1	reviewed	p.E571G	1.000	138	0%	109	69.7%	-	-	possibly_damaging(0.778)	deleterious(0.01)	deleterious(0.697)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TP53	7157	genome.wustl.edu	37	17	7578540	7578548	+	In_Frame_Del	DEL	GAGGGCAGG	GAGGGCAGG	-	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	GAGGGCAGG	GAGGGCAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.PAL128in_frame_del	0.961:0.992:0.985:0.023:0.000:0.000:0.000:0.106:0.116	-	-	-	-	-	-	-	-	-	superfamily_p53-like transcription factors,HMMPfam_P53
ULK2	9706	genome.wustl.edu	37	17	19720149	19720149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142610.1	-1	reviewed	p.D337Y	1.000	70	0%	81	24.7%	-	-	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	superfamily_Protein kinase-like (PK-like)
SUPT6H	6830	genome.wustl.edu	37	17	27004799	27004799	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003170.3	+1	validated	p.R322W	1.000	50	0%	42	45.2%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
GRB7	2886	genome.wustl.edu	37	17	37901530	37901531	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030002.1	+1	reviewed	p.Q350fs	0.998:0.996	-	-	-	-	-	-	-	-	-	NULL
BZRAP1	9256	genome.wustl.edu	37	17	56400891	56400891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004758.2	-1	validated	p.D320N	0.974	65	0%	137	17.5%	-	-	benign(0.349)	tolerated(0.06)	neutral(0.433)	NULL
BZRAP1	9256	genome.wustl.edu	37	17	56403692	56403692	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004758.2	-1	validated	p.E178Q	1.000	74	0%	119	21%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
PSTPIP2	9050	genome.wustl.edu	37	18	43570717	43570717	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024430.3	-1	validated	p.G309A	1.000	66	0%	74	9.5%	-	-	benign(0.34)	deleterious(0.05)	neutral(0.453)	NULL
CDH19	28513	genome.wustl.edu	37	18	64239412	64239412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021153.2	-1	reviewed	p.M10I	0.003	64	0%	50	46%	-	-	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
MUC16	94025	genome.wustl.edu	37	19	9090262	9090262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.S518L	0.002	70	0%	40	55%	-	-	unknown(0)	-	-	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31769600	31769600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020856.2	-1	validated	p.G367S	1.000	143	0%	265	17%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RHPN2	85415	genome.wustl.edu	37	19	33471017	33471017	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033103.4	-1	reviewed	p.R649T	1.000	78	0%	157	21%	-	-	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	NULL
PSG6	5675	genome.wustl.edu	37	19	43414696	43414696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000402456	-1	known	p.H248N	0.000	34	0%	37	59.5%	-	-	benign(0.017)	tolerated(0.17)	neutral(0.059)	NULL
EHD2	30846	genome.wustl.edu	37	19	48239659	48239659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014601.3	+1	reviewed	p.E317K	1.000	44	0%	47	31.9%	-	-	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
PPP2R1A	5518	genome.wustl.edu	37	19	52715971	52715971	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014225.5	+1	reviewed	p.P179R	1.000	31	0%	13	53.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
PYGB	5834	genome.wustl.edu	37	20	25274857	25274857	+	Silent	SNP	C	C	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428458	+1	known	p.A166V	0.004	65	0%	44	43.2%	-	-	-	-	-	HMMPfam_Phosphorylase,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
PSMG1	8624	genome.wustl.edu	37	21	40553791	40553791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003720.2	-1	validated	p.L50F	0.899	38	0%	36	30.6%	-	-	benign(0)	tolerated(0.24)	neutral(0.037)	NULL
MYO18B	84700	genome.wustl.edu	37	22	26422788	26422788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.T2283M	1.000	23	0.000	9	0.778	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UQCR10	29796	genome.wustl.edu	37	22	30163451	30163451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013387.3	+1	validated	p.A22T	1.000	37	0%	53	13.2%	-	-	benign(0.227)	tolerated(0.19)	neutral(0.072)	HMMPfam_UCR_UQCRX_QCR9,superfamily_Ubiquinol_cytC_Reductase_QCR9
USP9X	8239	genome.wustl.edu	37	X	41073894	41073894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A1C8-01	TCGA-AX-A1C8-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039590.2	+1	reviewed	p.E1755K	1.000	46	0%	49	22.4%	-	-	benign(0.033)	tolerated(0.15)	neutral(0.242)	HMMPfam_UCH,superfamily_Cysteine proteinases
