Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MTHFR	4524	genome.wustl.edu	37	1	11854000	11854000	+	Silent	SNP	C	C	G	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005957.4	-1	reviewed	p.V498	1.000	21	0%	38	26.3%	-	-	-	-	-	NULL
VPS13D	55187	genome.wustl.edu	37	1	12382011	12382011	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015378.2	+1	reviewed	p.P2565R	1.000	41	0%	48	25%	-	-	possibly_damaging(0.456)	tolerated(0.57)	neutral(0.155)	NULL
PUM1	9698	genome.wustl.edu	37	1	31409607	31409607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001020658.1	-1	reviewed	p.M1106I	1.000	53	0%	58	29.3%	-	-	benign(0.001)	tolerated(0.29)	neutral(0.029)	superfamily_ARM repeat
KIAA1522	57648	genome.wustl.edu	37	1	33235325	33235325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020888.2	+1	validated	p.R213L	0.461	20	0%	22	27.3%	-	-	probably_damaging(0.996)	-	-	NULL
CLSPN	63967	genome.wustl.edu	37	1	36204805	36204805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022111.2	-1	reviewed	p.Y1121S	1.000	57	0%	103	63.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC5A9	200010	genome.wustl.edu	37	1	48703475	48703475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135181.1	+1	validated	p.A498T	0.978	53	0%	50	42%	-	-	benign(0.007)	tolerated(0.08)	neutral(0.300)	HMMPfam_SSF
PRELP	5549	genome.wustl.edu	37	1	203452383	203452383	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002725.3	+1	reviewed	p.R24T	0.433	10	0%	23	52.2%	-	-	benign(0.014)	tolerated(0.15)	neutral(0.241)	NULL
PSD4	23550	genome.wustl.edu	37	2	113956734	113956734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409378	+1	known	p.C113Y	0.011	3	0.000	16	0.938	-	-	unknown(0)	deleterious(0)	-	NULL
DLX2	1746	genome.wustl.edu	37	2	172966196	172966196	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004405.3	-1	reviewed	p.Q193H	1.000	10	0%	20	35%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
CPS1	1373	genome.wustl.edu	37	2	211518806	211518806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122633.1	+1	reviewed	p.A1186T	1.000	74	0%	87	44.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Glutathione synthetase ATP-binding domain-like
GOLGB1	2804	genome.wustl.edu	37	3	121410554	121410554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004487.3	-1	validated	p.D2548N	1.000	62	0%	128	22.7%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
TMEM212	389177	genome.wustl.edu	37	3	171569799	171569799	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000334567	+1	known	p.L63V	0.000	66	0%	118	34.7%	-	-	possibly_damaging(0.558)	deleterious(0)	deleterious(0.635)	NULL
EHHADH	1962	genome.wustl.edu	37	3	184971805	184971805	+	Silent	SNP	G	G	C	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001966.3	-1	reviewed	p.A2	0.964	20	0%	36	41.7%	-	-	-	-	-	superfamily_SSF52096
RFC1	5981	genome.wustl.edu	37	4	39293387	39293389	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002913.3	-1	reviewed	p.G1013in_frame_del	0.224:0.226:0.999	-	-	-	-	-	-	-	-	-	HMMPfam_RFC1
PRSS12	8492	genome.wustl.edu	37	4	119204151	119204151	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003619.2	-1	reviewed	p.R719G	0.837	67	0%	69	58%	-	-	benign(0.192)	deleterious(0)	neutral(0.463)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
GALNT7	51809	genome.wustl.edu	37	4	174203622	174203623	+	Splice_Site	INS	-	-	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000502407	+1	known	NULL	0.050:0.152	-	-	-	-	-	-	-	-	-	-
SV2C	22987	genome.wustl.edu	37	5	75587594	75587594	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014979.1	+1	provisional	p.I417S	1.000	76	0%	85	47.1%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
PDE8B	8622	genome.wustl.edu	37	5	76721598	76721598	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003719.2	+1	validated	p.E809K	1.000	39	0%	68	30.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PDEase_I,superfamily_HD-domain/PDEase-like
SLC12A2	6558	genome.wustl.edu	37	5	127514260	127514260	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001046.2	+1	validated	p.E993D	0.997	52	0%	81	42%	-	-	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
PCDHB12	56124	genome.wustl.edu	37	5	140590188	140590188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018932.3	+1	reviewed	p.A570V	0.033	19	0%	28	39.3%	-	-	benign(0.008)	deleterious(0.03)	neutral(0.364)	superfamily_Cadherin
HIST1H2AM	8336	genome.wustl.edu	37	6	27860583	27860584	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003514.2	-1	reviewed	p.L116fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00414,superfamily_Histone-fold
MAS1L	116511	genome.wustl.edu	37	6	29454573	29454573	+	Silent	SNP	G	G	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052967.1	-1	provisional	p.P369	0.002	59	0%	78	38.5%	-	-	-	-	-	NULL
FAM135A	57579	genome.wustl.edu	37	6	71233761	71233761	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105531.2	+1	validated	p.D399H	1.000	50	0%	58	55.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UFL1	23376	genome.wustl.edu	37	6	96974288	96974288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015323.4	+1	validated	p.L148F	1.000	79	0%	76	48.7%	-	-	possibly_damaging(0.565)	deleterious(0)	deleterious(0.637)	HMMPfam_DUF2042
HOXA1	3198	genome.wustl.edu	37	7	27134370	27134370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005522.4	-1	reviewed	p.R233C	1.000	49	0%	62	58.1%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
POLM	27434	genome.wustl.edu	37	7	44119984	44119984	+	Missense_Mutation	SNP	T	T	C	rs143971135	by1000genomes	TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000445616	-1	known	p.I153M	0.001	1	0.000	4	1.000	-	-	benign(0.022)	-	-	NULL
ENSG00000245043	0	genome.wustl.edu	37	7	64534207	64534208	+	RNA	DEL	TG	TG	-	rs147092229		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501153	-1	known	NULL	1.000:1.000	-	-	-	-	-	-	-	-	-	-
POLR2J	5439	genome.wustl.edu	37	7	102119254	102119256	+	Splice_Site	DEL	CTT	CTT	-	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006234.4	-1	reviewed	e2-1	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	-
RELN	5649	genome.wustl.edu	37	7	103237001	103237001	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.D1147E	1.000	53	0%	39	64.1%	-	-	possibly_damaging(0.942)	tolerated(0.31)	neutral(0.414)	NULL
IMPDH1	3614	genome.wustl.edu	37	7	128036662	128036662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000883.3	-1	reviewed	p.T418I	1.000	29	0%	25	20%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IMPDH,PatternScan_IMP_DH_GMP_RED,superfamily_SSF51412
ZNF212	7988	genome.wustl.edu	37	7	148947810	148947810	+	Silent	SNP	C	C	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000488917	+1	known	p.R4*	0.058	69	0%	53	58.5%	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
PHYHIP	9796	genome.wustl.edu	37	8	22078985	22078985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099335.1	-1	validated	p.V292I	0.998	30	0%	11	100%	-	-	possibly_damaging(0.646)	tolerated(0.29)	neutral(0.256)	NULL
CNTNAP3	79937	genome.wustl.edu	37	9	39086755	39086755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033655.3	-1	reviewed	p.H1104Q	0.523	97	0%	75	18.7%	-	-	benign(0.015)	deleterious(0)	neutral(0.445)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
ITGA8	8516	genome.wustl.edu	37	10	15697357	15697357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003638.1	-1	provisional	p.D333N	1.000	43	0%	60	60%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FG-GAP,HMMSmart_Int_alpha,superfamily_SSF69318
RSU1	6251	genome.wustl.edu	37	10	16794564	16794564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012425.3	-1	reviewed	p.R191H	1.000	19	0%	32	31.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058
OR51V1	283111	genome.wustl.edu	37	11	5221439	5221442	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	rs150098602	by1000genomes	TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	AAAG	AAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004760.2	-1	validated	p.F163fs	0.000:0.001:0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PTPRQ	374462	genome.wustl.edu	37	12	81014104	81014104	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000266688	+1	known	p.G1854A	0.991	24	0%	51	15.7%	-	-	probably_damaging(0.979)	tolerated(0.25)	neutral(0.459)	NULL
KIAA1033	23325	genome.wustl.edu	37	12	105520916	105520916	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015275.1	+1	validated	p.I350F	1.000	32	0%	83	65.1%	-	-	benign(0.006)	tolerated(0.1)	neutral(0.286)	NULL
GSX1	219409	genome.wustl.edu	37	13	28368041	28368043	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145657.1	+1	provisional	p.S253in_frame_del	1.000:1.000:0.998	-	-	-	-	-	-	-	-	-	NULL
TTLL5	23093	genome.wustl.edu	37	14	76232563	76232563	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015072.4	+1	reviewed	p.T623S	0.199	31	0%	41	61%	-	-	benign(0.044)	tolerated(0.37)	neutral(0.021)	NULL
BUB1B	701	genome.wustl.edu	37	15	40457304	40457304	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001211.5	+1	reviewed	p.V29E	1.000	32	0%	35	42.9%	-	-	possibly_damaging(0.5)	deleterious(0)	deleterious(0.612)	NULL
RPAP1	26015	genome.wustl.edu	37	15	41828368	41828368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015540.2	-1	reviewed	p.V127I	0.142	55	0%	48	37.5%	-	-	benign(0.106)	tolerated(0.55)	neutral(0.015)	NULL
HERC1	8925	genome.wustl.edu	37	15	63961737	63961737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.A2736T	1.000	23	0%	40	47.5%	-	-	possibly_damaging(0.815)	-	-	NULL
SETD1A	9739	genome.wustl.edu	37	16	30995306	30995306	+	Silent	SNP	C	C	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014712.1	+1	provisional	p.L1696	0.994	20	0%	40	25%	-	-	-	-	-	HMMSmart_PostSET,superfamily_SSF82199
WWOX	51741	genome.wustl.edu	37	16	79245873	79245874	+	Frame_Shift_Ins	INS	-	-	GTAAA	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000402655	+1	known	p.S263fs	0.036:0.005	-	-	-	-	-	-	-	-	-	NULL
SLC52A1	55065	genome.wustl.edu	37	17	4936803	4936818	+	Frame_Shift_Del	DEL	GGCAAGGGGGTTGGCG	GGCAAGGGGGTTGGCG	-	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	GGCAAGGGGGTTGGCG	GGCAAGGGGGTTGGCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104577.1	-1	validated	p.N324fs	1.000:1.000:1.000:0.987:0.980:0.911:0.928:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.951	-	-	-	-	-	-	-	-	-	HMMPfam_DUF1011
TP53	7157	genome.wustl.edu	37	17	7577141	7577141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.G266V	1.000	36	0%	47	95.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_P53
SLC38A10	124565	genome.wustl.edu	37	17	79225015	79225075	+	Frame_Shift_Del	DEL	TTTAAAGGGGAGCAAGGGAGATAAAACGGTAATCACAAGCCATGTGACGATGCCGCAGGTG	TTTAAAGGGGAGCAAGGGAGATAAAACGGTAATCACAAGCCATGTGACGATGCCGCAGGTG	-	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	TTTAAAGGGGAGCAAGGGAGATAAAACGGTAATCACAAGCCATGTGACGATGCCGCAGGTG	TTTAAAGGGGAGCAAGGGAGATAAAACGGTAATCACAAGCCATGTGACGATGCCGCAGGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138570.2	-1	validated	p.H762fs	0.002:0.004:0.002:0.002:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.003:0.042:0.255:0.328:0.327:0.277:0.004:0.001:0.001:0.001:0.016:0.018:0.004:0.003:0.001:0.002:0.003:0.004:0.003:0.003:0.004:0.006:0.010:0.021:0.037:0.045:0.046:0.043:0.045:0.049:0.048:0.050:0.047:0.049:0.046:0.006:0.007:0.010:0.010:0.005:0.002:0.001:0.000:0.000:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
LAMA1	284217	genome.wustl.edu	37	18	6956505	6956516	+	In_Frame_Del	DEL	CAGCTCCAGCTC	CAGCTCCAGCTC	-	rs11270496	byCluster;by1000genomes	TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	CAGCTCCAGCTC	CAGCTCCAGCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000344342	-1	known	p.GAGA189in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.002:0.001:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
TJP3	27134	genome.wustl.edu	37	19	3743959	3743959	+	Silent	SNP	G	G	A	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014428.1	+1	provisional	p.V655	0.996	54	0%	36	11.1%	-	-	-	-	-	HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
FBXO17	115290	genome.wustl.edu	37	19	39433382	39433382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148169.1	-1	reviewed	p.V244I	0.981	13	0%	17	76.5%	-	-	possibly_damaging(0.484)	deleterious(0)	deleterious(0.605)	HMMPfam_FBA,superfamily_Galactose-binding domain-like
CHGB	1114	genome.wustl.edu	37	20	5903841	5903841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001819.2	+1	reviewed	p.V351I	0.000	11	0%	30	46.7%	-	-	benign(0)	tolerated(0.82)	neutral(0.001)	HMMPfam_Granin
PDXK	8566	genome.wustl.edu	37	21	45163688	45163688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003681.4	+1	reviewed	p.V111M	1.000	35	0%	90	14.4%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Ribokinase-like
TRAPPC10	7109	genome.wustl.edu	37	21	45499917	45499917	+	Silent	SNP	C	C	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003274.4	+1	reviewed	p.L544	0.004	38	0%	102	24.5%	-	-	-	-	-	NULL
CELSR1	9620	genome.wustl.edu	37	22	46762988	46762988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014246.1	-1	reviewed	p.V2703M	0.994	13	0.000	5	0.800	-	-	possibly_damaging(0.522)	deleterious(0.01)	deleterious(0.582)	HMMPfam_7tm_2
SMC1A	8243	genome.wustl.edu	37	X	53432009	53432009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006306.2	-1	reviewed	p.R711W	1.000	35	0%	38	50%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SMC_N,superfamily_SSF52540
HUWE1	10075	genome.wustl.edu	37	X	53585660	53585660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AX-A2H5-01	TCGA-AX-A2H5-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.D2706N	1.000	138	0%	133	50.4%	-	-	unknown(0)	deleterious(0.02)	-	NULL
