Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ABL2	27	genome.wustl.edu	37	1	179077029	179077029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007314.3	-1	reviewed	p.D1125Y	1.000	107	0%	152	44.1%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_F_actin_bind,HMMSmart_SM00808
RAB3GAP2	25782	genome.wustl.edu	37	1	220363468	220363468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012414.3	-1	reviewed	p.A551G	1.000	177	0%	490	44.3%	19	47.3%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	NULL
WDR26	80232	genome.wustl.edu	37	1	224581651	224581651	+	Silent	SNP	T	T	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000480676	-1	known	p.T247S	0.969	113	0%	232	41.8%	93	47.3%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
RYR2	6262	genome.wustl.edu	37	1	237604646	237604646	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.E345*	1.000	185	0%	457	16.6%	0	-	-	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
DNAH6	1768	genome.wustl.edu	37	2	84838934	84838934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001370.1	+1	validated	p.K1144R	1.000	31	0%	97	43.3%	3	0%	benign(0.184)	tolerated(0.85)	neutral(0.018)	HMMPfam_DHC_N2
NFE2L2	4780	genome.wustl.edu	37	2	178098945	178098945	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006164.3	-1	validated	p.R34G	1.000	174	0%	337	49.6%	52	61.5%	unknown(0)	deleterious(0)	-	NULL
ORMDL1	94101	genome.wustl.edu	37	2	190647321	190647321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128150.1	-1	validated	p.M1V	1.000	262	0%	164	53.7%	56	62.5%	benign(0)	deleterious(0)	neutral(0.445)	NULL
ZFAND2B	130617	genome.wustl.edu	37	2	220072619	220072619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138802.1	+1	provisional	p.N98S	1.000	150	0%	95	16.8%	36	27.7%	possibly_damaging(0.946)	deleterious(0.05)	deleterious(0.736)	NULL
CNTN6	27255	genome.wustl.edu	37	3	1424760	1424760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014461.2	+1	reviewed	p.S767R	1.000	361	0%	345	10.7%	0	-	possibly_damaging(0.472)	deleterious(0)	deleterious(0.601)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
ZNF385D	79750	genome.wustl.edu	37	3	21792405	21792405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024697.2	-1	validated	p.R2G	1.000	129	0%	70	25.7%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	A	rs121913400	byCluster	TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.S33Y	1.000	86	0%	122	13.9%	184	8.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTPN23	25930	genome.wustl.edu	37	3	47452297	47452297	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015466.2	+1	validated	p.Q1003H	0.972	55	0%	25	24%	14	28.5%	benign(0.253)	tolerated(0.15)	neutral(0.267)	NULL
UBA5	79876	genome.wustl.edu	37	3	132379394	132379394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024818.3	+1	reviewed	p.V5L	0.952	60	0%	23	34.8%	7	57.1%	possibly_damaging(0.84)	tolerated(0.23)	neutral(0.363)	NULL
PCOLCE2	26577	genome.wustl.edu	37	3	142567144	142567144	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013363.3	-1	validated	p.K121N	1.000	72	0%	77	32.5%	1	100%	possibly_damaging(0.76)	tolerated(0.05)	deleterious(0.627)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_ABC_TRANSPORTER_1
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.H1047R	1.000	88	0%	194	36.6%	10	70%	possibly_damaging(0.926)	deleterious(0.03)	deleterious(0.739)	HMMSmart_PI3Kc,superfamily_Kinase_like
UGT2B10	7365	genome.wustl.edu	37	4	69696394	69696394	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001075.4	+1	validated	p.W462R	1.000	156	0%	398	34.9%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
ARHGAP10	79658	genome.wustl.edu	37	4	148968114	148968114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024605.3	+1	validated	p.V647M	0.654	206	0%	193	25.9%	7	57.1%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
FAT1	2195	genome.wustl.edu	37	4	187522511	187522511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.L3851S	0.823	284	0%	287	13.2%	38	5.2%	benign(0.313)	tolerated(0.41)	neutral(0.113)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases
PCDHGA5	56110	genome.wustl.edu	37	5	140746124	140746124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018918.2	+1	reviewed	p.V743M	0.538	293	0%	169	31.4%	0	-	benign(0.019)	tolerated(0.09)	neutral(0.297)	NULL
PCDHGA12	26025	genome.wustl.edu	37	5	140812105	140812105	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003735.2	+1	reviewed	p.A593	0.031	112	0%	56	26.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
AKAP9	10142	genome.wustl.edu	37	7	91712761	91712761	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005751.4	+1	reviewed	p.S2814fs	0.716	-	-	-	-	-	-	-	-	-	NULL
UNC5D	137970	genome.wustl.edu	37	8	35624453	35624453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080872.2	+1	validated	p.R783W	1.000	78	1.3%	143	16.1%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
GRHL2	79977	genome.wustl.edu	37	8	102644594	102644594	+	Splice_Site	SNP	G	G	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024915.3	+1	reviewed	e11+1	1.000	65	0%	175	57.7%	2	100%	-	-	-	-
BAI1	575	genome.wustl.edu	37	8	143558888	143558888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001702.2	+1	reviewed	p.F455L	1.000	231	0%	104	13.5%	0	-	benign(0.152)	tolerated(0.79)	neutral(0.014)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
C9orf66	157983	genome.wustl.edu	37	9	215060	215060	+	Missense_Mutation	SNP	G	G	T	rs141134256	by1000genomes	TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152569.2	-1	validated	p.R113S	0.098	1	0.000	5	1.000	0	-	unknown(0)	-	-	NULL
CYLC2	1539	genome.wustl.edu	37	9	105767017	105767017	+	Missense_Mutation	SNP	C	C	A	rs188765977	by1000genomes	TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001340.3	+1	reviewed	p.P74Q	0.942	226	0%	246	32.5%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
ENSG00000228637	0	genome.wustl.edu	37	10	42396342	42396343	+	RNA	INS	-	-	A	rs71240314		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000439345	-1	novel	NULL	0.000:0.000	-	-	-	-	-	-	-	-	-	-
ARID5B	84159	genome.wustl.edu	37	10	63829471	63829471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.R372C	1.000	67	0%	168	19%	14	21.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like
ZMIZ1	57178	genome.wustl.edu	37	10	81063871	81063871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020338.3	+1	validated	p.C742F	1.000	108	0%	77	20.8%	60	23.3%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_zf-MIZ,superfamily_RING/U-box
PTEN	5728	genome.wustl.edu	37	10	89720799	89720802	+	Frame_Shift_Del	DEL	TACT	TACT	-	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	TACT	TACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.T319fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
FGFR2	2263	genome.wustl.edu	37	10	123279677	123279677	+	Missense_Mutation	SNP	G	G	C	rs79184941	byCluster	TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.S252W	1.000	102	0%	135	17%	91	10.9%	probably_damaging(0.963)	tolerated(0.07)	deleterious(0.725)	NULL
BRMS1	25855	genome.wustl.edu	37	11	66108730	66108730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024957.1	-1	reviewed	p.T102M	0.149	71	0%	30	26.7%	71	30.9%	possibly_damaging(0.944)	tolerated(0.07)	deleterious(0.708)	HMMPfam_Sds3
ENSG00000204455	0	genome.wustl.edu	37	11	89595740	89595740	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000311917	+1	known	p.H357	0.001	1286	0.1%	954	26.2%	0	-	-	-	-	HMMPfam_SPRY
SCARNA9	619383	genome.wustl.edu	37	11	93454832	93454835	+	RNA	DEL	GTGT	GTGT	-	rs143635317	by1000genomes	TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	GTGT	GTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_002569.1	+1	provisional	NULL	0.007:0.008:0.006:0.000	-	-	-	-	-	-	-	-	-	-
PTPN6	5777	genome.wustl.edu	37	12	7069296	7069296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080549.3	+1	reviewed	p.R492Q	1.000	113	0%	61	29.5%	76	35.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
MLL2	8085	genome.wustl.edu	37	12	49425664	49425665	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.Q4275fs	1.000:0.998	-	-	-	-	-	-	-	-	-	NULL
KRT83	3889	genome.wustl.edu	37	12	52708455	52708455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002282.3	-1	reviewed	p.T481I	0.933	66	0%	19	21.1%	0	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
UBE2N	7334	genome.wustl.edu	37	12	93805013	93805013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003348.3	-1	reviewed	p.N31K	1.000	72	0%	115	29.6%	85	49.4%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
C12orf51	283450	genome.wustl.edu	37	12	112600888	112600888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109662.2	-1	validated	p.P3938S	1.000	150	0%	48	25%	19	31.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
MYH7	4625	genome.wustl.edu	37	14	23885349	23885349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.R1606H	0.977	572	0%	370	33.8%	0	-	benign(0.041)	deleterious(0)	neutral(0.447)	HMMPfam_Myosin_tail_1
DUOX1	53905	genome.wustl.edu	37	15	45437188	45437188	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017434.3	+1	reviewed	p.E744	0.997	235	0%	166	11.4%	2	0%	-	-	-	NULL
IGDCC3	9543	genome.wustl.edu	37	15	65623975	65623975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004884.3	-1	validated	p.G391S	1.000	91	0%	49	16.3%	0	-	benign(0)	tolerated(0.9)	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TMED3	23423	genome.wustl.edu	37	15	79614432	79614432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007364.2	+1	validated	p.S177N	0.040	118	0%	107	28%	161	32.9%	benign(0.051)	tolerated(0.07)	neutral(0.322)	HMMPfam_EMP24_GP25L
CHD2	1106	genome.wustl.edu	37	15	93567735	93567735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001271.3	+1	reviewed	p.R1763C	1.000	290	0.3%	253	43.1%	26	53.8%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
DNAH3	55567	genome.wustl.edu	37	16	21011750	21011750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.V2073M	1.000	443	0.2%	597	12.2%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
DPEP1	1800	genome.wustl.edu	37	16	89696827	89696827	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128141.1	+1	validated	p.S3	0.103	144	0%	68	17.6%	6	0%	-	-	-	NULL
TMEM107	84314	genome.wustl.edu	37	17	8079527	8079527	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032354.3	-1	validated	p.F26	1.000	147	0%	96	36.5%	31	48.3%	-	-	-	NULL
LRRC37B	114659	genome.wustl.edu	37	17	30349423	30349423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052888.2	+1	validated	p.D420Y	0.000	298	0%	178	34.3%	11	63.6%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
KRT36	8689	genome.wustl.edu	37	17	39643383	39643383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003771.4	-1	reviewed	p.R343C	0.994	220	0%	109	14.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Filament
VAPA	9218	genome.wustl.edu	37	18	9950399	9950399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003574.5	+1	reviewed	p.M187T	0.977	166	0%	150	16.7%	186	9.1%	benign(0.001)	tolerated(0.35)	neutral(0.021)	NULL
CALR3	125972	genome.wustl.edu	37	19	16606600	16606600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145046.3	-1	validated	p.S52L	1.000	392	0.3%	267	34.8%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_Calreticulin,superfamily_ConA_like_lec_gl
HNRNPUL1	11100	genome.wustl.edu	37	19	41808777	41808777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007040.3	+1	reviewed	p.R632Q	1.000	98	1%	63	42.9%	115	40.8%	unknown(0)	deleterious(0.02)	-	NULL
NUCB1	4924	genome.wustl.edu	37	19	49422495	49422495	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424608	+1	known	p.S288L	0.007	139	0%	148	36.5%	211	51.6%	-	-	-	superfamily_EF-hand
CDH4	1002	genome.wustl.edu	37	20	60427926	60427926	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001794.2	+1	reviewed	p.N283	1.000	225	0%	195	23.6%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin
OPRL1	4987	genome.wustl.edu	37	20	62730031	62730031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000913.3	+1	reviewed	p.R331H	0.998	150	0.7%	94	26.6%	0	-	benign(0.095)	deleterious(0)	neutral(0.452)	superfamily_Family A G protein-coupled receptor-like
PRDM15	63977	genome.wustl.edu	37	21	43236112	43236112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022115.3	-1	validated	p.R1147C	1.000	230	0%	74	36.5%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
UMODL1	89766	genome.wustl.edu	37	21	43542987	43542987	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173568.3	+1	validated	p.L1087fs	0.000	-	-	-	-	-	-	-	-	-	NULL
ENSG00000211459	0	genome.wustl.edu	37	MT	1134	1134	+	RNA	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000389680	+1	known	NULL	NULL	14	0%	14	92.9%	908	76.9%	-	-	-	-
ENSG00000210117	0	genome.wustl.edu	37	MT	5560	5560	+	RNA	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000387382	+1	novel	NULL	NULL	998	0%	1277	11.9%	1	0%	-	-	-	-
DCAF8L2	347442	genome.wustl.edu	37	X	27766140	27766140	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136533.1	+1	provisional	p.P376	0.839	387	0%	388	37.1%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
FTHL17	53940	genome.wustl.edu	37	X	31089933	31089933	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031894.2	-1	reviewed	p.D46	0.601	222	0%	95	36.8%	0	-	-	-	-	HMMPfam_Ferritin,superfamily_Ferritin/RR_like
CACNA1F	778	genome.wustl.edu	37	X	49074246	49074246	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005183.2	-1	reviewed	p.T1030	0.805	493	0%	375	34.7%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
PPP1R3F	89801	genome.wustl.edu	37	X	49157909	49157909	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000471261	+1	known	p.N158H	0.001	139	0%	140	34.3%	1	100%	unknown(0)	-	-	NULL
IQSEC2	23096	genome.wustl.edu	37	X	53270998	53270998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111125.1	-1	validated	p.R995W	1.000	166	0%	114	43%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_PH,superfamily_SSF50729
RHOXF2	84528	genome.wustl.edu	37	X	119293082	119293082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032498.1	+1	provisional	p.G81S	0.000	459	0.2%	224	22.8%	0	-	possibly_damaging(0.903)	tolerated(0.09)	deleterious(0.654)	NULL
ARHGAP36	158763	genome.wustl.edu	37	X	130220356	130220356	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JT-01	TCGA-B5-A0JT-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144967.3	+1	validated	p.P445	0.978	294	0%	155	34.2%	0	-	-	-	-	NULL
