Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
LRRC47	57470	genome.wustl.edu	37	1	3703493	3703493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020710.2	-1	validated	p.R333W	1.000	24	0%	66	13.6%	45	2.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_B3_4
UBR4	23352	genome.wustl.edu	37	1	19433445	19433445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020765.2	-1	validated	p.A4041T	0.999	115	0%	76	15.8%	7	0%	benign(0.003)	tolerated(0.56)	neutral(0.006)	superfamily_ARM repeat
NBPF3	84224	genome.wustl.edu	37	1	21804793	21804793	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032264.2	+1	validated	p.D383	0.002	347	0%	228	20.2%	2	0%	-	-	-	HMMPfam_DUF1220
RAP1GAP	5909	genome.wustl.edu	37	1	21952879	21952879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145658.1	-1	validated	p.G31E	1.000	71	0%	237	23.6%	5	20%	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
ZBTB40	9923	genome.wustl.edu	37	1	22835706	22835706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083621.1	+1	validated	p.L605M	0.825	363	0%	346	20.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27087503	27087503	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.R693*	1.000	264	0%	207	44.4%	10	40%	-	-	-	NULL
GPATCH3	63906	genome.wustl.edu	37	1	27220804	27220804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022078.2	-1	validated	p.I325T	0.995	132	0%	255	38%	9	33.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
WDTC1	23038	genome.wustl.edu	37	1	27627865	27627865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015023.3	+1	validated	p.G460W	1.000	75	0%	88	13.6%	23	17.3%	possibly_damaging(0.729)	deleterious(0.02)	deleterious(0.649)	superfamily_WD40 repeat-like,HMMSmart_SM00028,superfamily_TPR-like
CSMD2	114784	genome.wustl.edu	37	1	33985441	33985441	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.A3425	0.900	43	0%	52	15.4%	1	0%	-	-	-	NULL
CSMD2	114784	genome.wustl.edu	37	1	34192260	34192260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.P759S	0.996	79	0%	48	12.5%	0	-	benign(0.008)	tolerated(0.8)	neutral(0.001)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
KIAA0494	9813	genome.wustl.edu	37	1	47144187	47144187	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014774.2	-1	validated	p.S478	0.116	254	0%	214	41.1%	23	30.4%	-	-	-	NULL
ODF2L	57489	genome.wustl.edu	37	1	86820361	86820361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020729.2	-1	validated	p.M511T	1.000	970	0%	475	17.5%	18	16.6%	probably_damaging(0.992)	tolerated(0.28)	deleterious(0.479)	NULL
NRAS	4893	genome.wustl.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	G	T	rs121913254	byCluster	TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002524.3	-1	reviewed	p.Q61K	1.000	389	0%	228	19.3%	27	22.2%	benign(0.006)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
WARS2	10352	genome.wustl.edu	37	1	119588247	119588247	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015836.3	-1	reviewed	p.C129	1.000	628	0%	399	12.8%	13	7.6%	-	-	-	HMMPfam_tRNA-synt_1b,superfamily_Nucleotidylyl transferase
PDE4DIP	9659	genome.wustl.edu	37	1	144921969	144921969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014644.4	-1	validated	p.E354K	1.000	411	0%	542	18.5%	16	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
VPS45	11311	genome.wustl.edu	37	1	150049849	150049849	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007259.3	+1	reviewed	p.L227	1.000	428	0%	574	11.8%	35	11.4%	-	-	-	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
SNX27	81609	genome.wustl.edu	37	1	151633285	151633285	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030918.5	+1	reviewed	p.R250*	1.000	1027	0%	1303	30%	4	50%	-	-	-	HMMPfam_PX,HMMSmart_PX,superfamily_PX
LINGO4	339398	genome.wustl.edu	37	1	151773461	151773461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004432.2	-1	provisional	p.A574T	1.000	59	0%	114	11.4%	0	-	benign(0.087)	tolerated(0.28)	neutral(0.038)	NULL
FLG	2312	genome.wustl.edu	37	1	152275687	152275687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.R3892L	0.000	279	0%	518	33.2%	0	-	unknown(0)	tolerated(0.12)	-	NULL
DENND4B	9909	genome.wustl.edu	37	1	153911490	153911490	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014856.2	-1	validated	p.H617Q	1.000	289	0%	637	58.4%	8	62.5%	benign(0.023)	tolerated(1)	neutral(0.001)	HMMPfam_dDENN,HMMSmart_dDENN
TPM3	7170	genome.wustl.edu	37	1	154148620	154148620	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152263.2	-1	reviewed	p.E116D	1.000	551	0.2%	522	30.5%	301	29.5%	possibly_damaging(0.911)	tolerated(0.05)	deleterious(0.708)	HMMPfam_Tropomyosin
ADAR	103	genome.wustl.edu	37	1	154558735	154558735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111.3	-1	reviewed	p.R1042C	1.000	60	0%	124	12.1%	123	8.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_A_deamin,HMMSmart_SM00552
DCST1	149095	genome.wustl.edu	37	1	155020385	155020385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152494.2	+1	validated	p.A579T	0.928	206	0.5%	249	14.5%	0	-	possibly_damaging(0.876)	deleterious(0.04)	deleterious(0.690)	HMMPfam_DC_STAMP
COPA	1314	genome.wustl.edu	37	1	160261966	160261966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098398.1	-1	reviewed	p.G1004C	1.000	200	0%	240	16.3%	133	13.5%	possibly_damaging(0.779)	tolerated(0.18)	neutral(0.347)	HMMPfam_COPI_C
FAM20B	9917	genome.wustl.edu	37	1	179013236	179013236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014864.3	+1	validated	p.G85V	1.000	184	0%	215	11.2%	14	7.1%	probably_damaging(0.957)	deleterious(0.01)	deleterious(0.806)	NULL
CACNA1E	777	genome.wustl.edu	37	1	181690939	181690939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.R668C	1.000	326	0%	526	32.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CACNA1E	777	genome.wustl.edu	37	1	181724387	181724387	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.C1281	0.970	328	0%	424	12.5%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
C1orf27	54953	genome.wustl.edu	37	1	186352234	186352234	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017847.5	+1	validated	p.P60	0.638	358	0%	601	34.1%	10	30%	-	-	-	NULL
PKP1	5317	genome.wustl.edu	37	1	201286743	201286743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000299.2	+1	reviewed	p.R297H	0.986	20	0%	32	21.9%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
CDK18	5129	genome.wustl.edu	37	1	205496979	205496979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212503.2	+1	validated	p.H293Y	1.000	275	0%	371	11.9%	26	7.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase
SYT14	255928	genome.wustl.edu	37	1	210334372	210334372	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153262.2	+1	validated	p.A551	0.000	287	0%	357	12%	0	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RPS6KC1	26750	genome.wustl.edu	37	1	213415961	213415961	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012424.3	+1	validated	p.S957	1.000	805	0%	873	12.7%	22	9%	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
SMYD2	56950	genome.wustl.edu	37	1	214505380	214505380	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020197.2	+1	validated	p.E319	1.000	181	0.6%	302	12.9%	100	13%	-	-	-	NULL
HLX	3142	genome.wustl.edu	37	1	221057573	221057573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021958.3	+1	validated	p.R332W	1.000	38	2.6%	39	25.6%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
MIA3	375056	genome.wustl.edu	37	1	222838874	222838874	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198551.2	+1	validated	p.L1879	0.001	183	0%	234	58.5%	80	60%	-	-	-	NULL
EPHX1	2052	genome.wustl.edu	37	1	226027718	226027718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000120.3	+1	reviewed	p.C304Y	0.930	160	0%	193	15%	699	16.4%	benign(0.013)	deleterious(0)	neutral(0.445)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
OR2C3	81472	genome.wustl.edu	37	1	247695681	247695681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198074.4	-1	validated	p.I45V	0.000	363	0%	431	11.6%	0	-	benign(0)	tolerated(0.86)	neutral(0.001)	HMMPfam_7tm_1,superfamily_SSF81321
OR2T33	391195	genome.wustl.edu	37	1	248436963	248436963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004695.1	-1	provisional	p.R52W	0.000	698	0%	912	29.6%	1	0%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ACP1	52	genome.wustl.edu	37	2	272206	272206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040649.2	+1	reviewed	p.A96V	0.986	394	0%	426	20%	34	32.3%	unknown(0)	deleterious(0.04)	-	HMMSmart_LMWPc
FNDC4	64838	genome.wustl.edu	37	2	27716824	27716824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022823.2	-1	validated	p.R143W	1.000	65	0%	114	14.9%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
MAP4K3	8491	genome.wustl.edu	37	2	39559086	39559086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003618.2	-1	reviewed	p.R168W	1.000	306	0%	147	18.4%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SPTBN1	6711	genome.wustl.edu	37	2	54876986	54876986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003128.2	+1	reviewed	p.D1813N	1.000	238	0%	144	16.7%	53	24.5%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
CCDC142	84865	genome.wustl.edu	37	2	74708942	74708942	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032779.3	-1	validated	e1+2	1.000	43	0%	83	38.6%	0	-	-	-	-	-
MRPS9	64965	genome.wustl.edu	37	2	105708908	105708908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182640.2	+1	reviewed	p.G234D	0.000	520	0%	475	10.7%	28	17.8%	benign(0.01)	tolerated(0.11)	neutral(0.272)	NULL
RGPD8	727851	genome.wustl.edu	37	2	113147650	113147650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000302558	-1	known	p.R958C	0.393	965	0%	1122	15.4%	0	-	benign(0.014)	deleterious(0)	neutral(0.445)	NULL
RALB	5899	genome.wustl.edu	37	2	121047207	121047207	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002881.2	+1	reviewed	p.V125	0.078	308	0%	228	43%	20	60%	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO7B	4648	genome.wustl.edu	37	2	128331594	128331594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080527.1	+1	provisional	p.R231H	0.992	74	0%	84	21.4%	0	-	benign(0.249)	tolerated(0.09)	neutral(0.322)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO7B	4648	genome.wustl.edu	37	2	128389273	128389273	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080527.1	+1	provisional	p.L1706I	0.954	9	0.000	31	0.645	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_MyTH4,HMMSmart_SM00139
MYO7B	4648	genome.wustl.edu	37	2	128394133	128394133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080527.1	+1	provisional	p.P2020H	1.000	36	0%	108	15.7%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
DARS	1615	genome.wustl.edu	37	2	136664912	136664912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001349.2	-1	validated	p.R494C	1.000	259	0%	319	17.9%	161	21.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases
LRP1B	53353	genome.wustl.edu	37	2	141081613	141081613	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000437977	-1	known	p.S353L	1.000	185	0.5%	105	19%	0	-	-	-	-	HMMPfam_Ldl_recept_b,superfamily_YWTD domain
TUBA4A	7277	genome.wustl.edu	37	2	220115433	220115433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006000.1	-1	reviewed	p.A330T	1.000	122	0%	91	61.5%	102	43.1%	benign(0)	tolerated(0.06)	neutral(0.323)	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C
DNPEP	23549	genome.wustl.edu	37	2	220250247	220250247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012100.2	-1	reviewed	p.R225W	0.998	74	0%	85	42.4%	91	40.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Peptidase_M18,superfamily_SSF53187
NEU2	4759	genome.wustl.edu	37	2	233899246	233899246	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005383.2	+1	reviewed	p.R208*	0.000	71	0%	51	41.2%	0	-	-	-	-	superfamily_Sialidase
CAPN10	11132	genome.wustl.edu	37	2	241530423	241530423	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023083.2	+1	reviewed	p.Y155	0.998	34	0%	92	40.2%	8	37.5%	-	-	-	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
AQP12A	375318	genome.wustl.edu	37	2	241631576	241631576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198998.1	+1	provisional	p.A70V	0.020	42	0%	58	37.9%	11	0%	benign(0)	tolerated(1)	-	superfamily_MIP
SETMAR	6419	genome.wustl.edu	37	3	4358391	4358391	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006515.3	+1	validated	p.R506*	0.788	23	0%	41	46.3%	22	31.8%	-	-	-	HMMPfam_Transposase_1
NEK10	152110	genome.wustl.edu	37	3	27204088	27204088	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000396636	-1	known	p.L958	1.000	433	0%	254	21.7%	1	0%	-	-	-	NULL
TRANK1	9881	genome.wustl.edu	37	3	36896793	36896793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014831.2	-1	provisional	p.V880M	0.999	127	0%	90	21.1%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ALAS1	211	genome.wustl.edu	37	3	52245357	52245357	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000493402	+1	known	p.P60L	0.000	387	0%	254	18.9%	72	18%	-	-	-	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ITIH4	3700	genome.wustl.edu	37	3	52861123	52861123	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002218.4	-1	reviewed	p.S114	0.076	99	0%	237	40.9%	1	100%	-	-	-	HMMSmart_SM00609,HMMPfam_VIT
IL17RB	55540	genome.wustl.edu	37	3	53894168	53894168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018725.3	+1	reviewed	p.P287S	0.000	131	0%	116	22.4%	17	17.6%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
FEZF2	55079	genome.wustl.edu	37	3	62356963	62356963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018008.3	-1	validated	p.T350M	1.000	103	0%	218	19.7%	0	-	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LMOD3	56203	genome.wustl.edu	37	3	69167864	69167864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198271.3	-1	validated	p.A548T	1.000	249	0.4%	193	18.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_WH2
PPP4R2	151987	genome.wustl.edu	37	3	73096426	73096426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174907.2	+1	provisional	p.G69V	1.000	453	0%	294	18%	9	11.1%	probably_damaging(1)	tolerated(0.61)	deleterious(0.504)	HMMPfam_PPP4R2
MYH15	22989	genome.wustl.edu	37	3	108158648	108158648	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014981.1	-1	validated	p.M1024T	0.001	408	0%	350	22.9%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
MORC1	27136	genome.wustl.edu	37	3	108688528	108688528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014429.3	-1	reviewed	p.M864I	0.992	379	0.3%	346	24%	0	-	benign(0.001)	tolerated(0.14)	neutral(0.249)	NULL
ZBTB20	26137	genome.wustl.edu	37	3	114069377	114069377	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015642.4	-1	validated	p.P443	0.052	68	0%	76	39.5%	1	0%	-	-	-	NULL
PLA1A	51365	genome.wustl.edu	37	3	119336904	119336904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015900.2	+1	validated	p.H265Y	0.998	750	0%	488	20.9%	18	16.6%	benign(0.004)	tolerated(0.46)	neutral(0.012)	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
STXBP5L	9515	genome.wustl.edu	37	3	121097634	121097634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014980.2	+1	validated	p.D774N	1.000	108	0%	136	12.5%	0	-	benign(0.005)	tolerated(0.17)	neutral(0.059)	NULL
GPR87	53836	genome.wustl.edu	37	3	151012383	151012383	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023915.3	-1	validated	p.A217	0.000	468	0%	322	40.4%	1	100%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SHOX2	6474	genome.wustl.edu	37	3	157820489	157820489	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006884.3	-1	reviewed	p.G178fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
GFM1	85476	genome.wustl.edu	37	3	158362443	158362443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024996.5	+1	reviewed	p.A7V	0.001	4	0.000	11	0.545	5	20%	unknown(0)	tolerated(0.28)	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.E542K	1.000	242	0%	193	38.3%	3	33.3%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
TTC14	151613	genome.wustl.edu	37	3	180320986	180320986	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133462.3	+1	validated	p.R121*	1.000	953	0.1%	927	39.9%	4	25%	-	-	-	NULL
CCDC50	152137	genome.wustl.edu	37	3	191093124	191093124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178335.2	+1	reviewed	p.I241T	0.971	250	0%	242	47.5%	11	27.2%	possibly_damaging(0.438)	tolerated(0.32)	neutral(0.167)	NULL
MUC4	4585	genome.wustl.edu	37	3	195505719	195505719	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.S4116	0.005	21	0%	406	19%	0	-	-	-	-	NULL
CPLX1	10815	genome.wustl.edu	37	4	786320	786322	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006651.3	-1	reviewed	p.E36in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Synaphin
WFS1	7466	genome.wustl.edu	37	4	6303353	6303353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006005.3	+1	reviewed	p.R611C	0.960	62	0%	196	14.8%	108	10.1%	probably_damaging(0.999)	tolerated(0.16)	deleterious(0.550)	NULL
ABLIM2	84448	genome.wustl.edu	37	4	8009786	8009786	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130083.1	-1	validated	p.R540*	1.000	108	0%	134	44.8%	0	-	-	-	-	NULL
KIAA1211	57482	genome.wustl.edu	37	4	57180633	57180633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020722.1	+1	validated	p.R322H	0.000	36	0%	21	42.9%	0	-	unknown(0)	tolerated(0.16)	-	NULL
ANKRD17	26057	genome.wustl.edu	37	4	74013046	74013046	+	Silent	SNP	T	T	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032217.3	-1	reviewed	p.G557	1.000	246	0%	127	23.6%	3	33.3%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
LIN54	132660	genome.wustl.edu	37	4	83905797	83905798	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194282.2	-1	validated	p.T67fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
FAT4	79633	genome.wustl.edu	37	4	126238080	126238080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.R172C	0.997	27	0%	22	50%	0	-	benign(0.357)	tolerated(0.18)	neutral(0.169)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
MFSD8	256471	genome.wustl.edu	37	4	128851956	128851956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152778.2	-1	reviewed	p.T294S	1.000	156	0%	142	18.3%	2	0%	benign(0.08)	tolerated(0.09)	neutral(0.302)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
DCLK2	166614	genome.wustl.edu	37	4	151142889	151142889	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040260.2	+1	validated	p.K398M	1.000	432	0%	456	17.5%	0	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LRBA	987	genome.wustl.edu	37	4	151511893	151511893	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000509835	-1	known	p.W708*	0.999	314	0%	261	16.5%	24	16.6%	-	-	-	NULL
SFRP2	6423	genome.wustl.edu	37	4	154702746	154702746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003013.2	-1	reviewed	p.E249K	1.000	432	0%	467	45.6%	0	-	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	superfamily_TIMP-like,HMMPfam_NTR,HMMSmart_SM00643
HELT	391723	genome.wustl.edu	37	4	185941547	185941547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029887.1	+1	provisional	p.R202H	1.000	24	0%	38	21.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hairy_orange
EXOC3	11336	genome.wustl.edu	37	5	447746	447746	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007277.4	+1	reviewed	p.D81	0.635	37	0%	44	18.2%	29	10.3%	-	-	-	NULL
BRD9	65980	genome.wustl.edu	37	5	891803	891805	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000467963	-1	known	p.K73in_frame_del	0.975:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82817499	82817499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004385.4	+1	reviewed	p.R1125H	0.000	186	0%	147	45.6%	2	50%	possibly_damaging(0.484)	tolerated(0.08)	neutral(0.461)	NULL
EPB41L4A	64097	genome.wustl.edu	37	5	111540123	111540123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022140.3	-1	validated	p.R442Q	0.985	409	0%	434	42.2%	1	0%	benign(0.373)	tolerated(0.07)	neutral(0.438)	NULL
TSSK1B	83942	genome.wustl.edu	37	5	112770389	112770389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032028.3	-1	validated	p.A50T	0.006	174	0%	121	20.7%	0	-	benign(0)	tolerated(0.76)	neutral(0.001)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PSD2	84249	genome.wustl.edu	37	5	139216544	139216544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032289.2	+1	provisional	p.V518I	0.973	77	0%	143	17.5%	0	-	benign(0.002)	tolerated(0.26)	neutral(0.034)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PCDHA3	56145	genome.wustl.edu	37	5	140181048	140181048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018906.2	+1	reviewed	p.R89Q	0.994	120	0%	155	21.9%	0	-	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140229367	140229367	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031857.1	+1	reviewed	p.D429	0.229	45	0%	79	45.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
GPX3	2878	genome.wustl.edu	37	5	150407669	150407669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002084.3	+1	reviewed	p.A220V	0.029	51	0%	69	15.9%	249	10.4%	unknown(0)	-	-	NULL
HRH2	3274	genome.wustl.edu	37	5	175110632	175110632	+	Silent	SNP	A	A	C	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001131055.1	+1	reviewed	p.P132	0.000	326	0%	214	20.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MBOAT1	154141	genome.wustl.edu	37	6	20152860	20152860	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080480.1	-1	provisional	p.F80	1.000	234	0%	252	19%	14	57.1%	-	-	-	NULL
CUL7	9820	genome.wustl.edu	37	6	43014744	43014744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014780.4	-1	reviewed	p.K757N	0.996	203	0%	129	46.5%	14	57.1%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
MRPL2	51069	genome.wustl.edu	37	6	43023356	43023356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015950.3	-1	reviewed	p.G211V	1.000	164	0%	121	14%	51	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ribosomal_L2_C,superfamily_Transl_SH3_like
MUT	4594	genome.wustl.edu	37	6	49415412	49415412	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000255.3	-1	reviewed	p.R511*	1.000	600	0%	264	18.6%	10	0%	-	-	-	HMMPfam_MM_CoA_mutase,superfamily_Cobalamin (vitamin B12)-dependent enzymes
GCM1	8521	genome.wustl.edu	37	6	52995722	52995722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003643.3	-1	reviewed	p.G150E	1.000	739	0%	738	22.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GCM,superfamily_GCM_motif
GCM1	8521	genome.wustl.edu	37	6	52995723	52995723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003643.3	-1	reviewed	p.G150R	1.000	752	0%	743	21.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GCM,superfamily_GCM_motif
HCRTR2	3062	genome.wustl.edu	37	6	55147082	55147082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001526.3	+1	reviewed	p.R389C	0.998	190	0%	183	43.7%	0	-	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_Orexin_rec2,superfamily_SSF81321
IMPG1	3617	genome.wustl.edu	37	6	76744412	76744412	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001563.2	-1	provisional	p.Q132*	0.966	131	0%	162	21.6%	0	-	-	-	-	NULL
RNF146	81847	genome.wustl.edu	37	6	127608679	127608679	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030963.2	+1	provisional	p.S306	1.000	316	0.3%	305	20.3%	30	30%	-	-	-	NULL
EYA4	2070	genome.wustl.edu	37	6	133789775	133789775	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004100.4	+1	reviewed	p.A292	0.407	274	0%	207	12.1%	0	-	-	-	-	NULL
GRM1	2911	genome.wustl.edu	37	6	146351082	146351082	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000838.3	+1	reviewed	p.D143	0.039	85	0%	104	12.5%	0	-	-	-	-	HMMPfam_ANF_receptor,superfamily_SSF53822
FNDC1	84624	genome.wustl.edu	37	6	159654465	159654465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032532.2	+1	validated	p.R974H	0.019	57	0%	66	19.7%	0	-	unknown(0)	deleterious(0.01)	-	NULL
LINC00574	80069	genome.wustl.edu	37	6	170201273	170201273	+	RNA	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026780.1	+1	validated	NULL	0.000	409	0.2%	341	19.4%	0	-	-	-	-	-
EIF3B	8662	genome.wustl.edu	37	7	2412411	2412411	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037283.1	+1	validated	p.N597	0.647	91	0%	192	11.5%	109	13.7%	-	-	-	HMMPfam_eIF2A,superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
PMS2	5395	genome.wustl.edu	37	7	6027101	6027101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000535.5	-1	reviewed	p.N432S	0.000	97	0%	221	19.5%	9	44.4%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21784597	21784597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.T2816M	0.000	209	0%	357	20.2%	0	-	benign(0.006)	deleterious(0.03)	neutral(0.364)	superfamily_P-loop containing nucleoside triphosphate hydrolases
WBSCR17	64409	genome.wustl.edu	37	7	70885989	70885989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022479.1	+1	reviewed	p.R287Q	1.000	115	0%	146	14.4%	0	-	benign(0.033)	tolerated(0.42)	neutral(0.015)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
BAZ1B	9031	genome.wustl.edu	37	7	72883891	72883891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032408.3	-1	validated	p.C941Y	0.866	400	0%	530	20.2%	33	24.2%	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
PCOLCE	5118	genome.wustl.edu	37	7	100201096	100201096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002593.3	+1	reviewed	p.Y47H	1.000	310	0%	231	45%	17	0%	probably_damaging(0.978)	tolerated(0.53)	neutral(0.428)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
MUC12	10071	genome.wustl.edu	37	7	100647880	100647880	+	Missense_Mutation	SNP	G	G	A	rs144292724	by1000genomes	TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000379442	+1	known	p.R4822H	0.001	479	0%	798	44.4%	0	-	probably_damaging(0.997)	-	-	NULL
SLC26A3	1811	genome.wustl.edu	37	7	107427351	107427351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000111.2	-1	reviewed	p.V298M	0.997	364	0%	407	23.1%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Sulfate_transp
SND1	27044	genome.wustl.edu	37	7	127292440	127292440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014390.2	+1	validated	p.A5T	1.000	65	0%	30	36.7%	104	26.9%	unknown(0)	tolerated(0.68)	-	NULL
CNOT4	4850	genome.wustl.edu	37	7	135080546	135080546	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013316.2	-1	validated	p.R320	1.000	958	0%	701	45.4%	7	57.1%	-	-	-	NULL
PRSS1	5644	genome.wustl.edu	37	7	142459721	142459721	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002769.3	+1	reviewed	p.Y99	0.204	325	0.3%	392	37%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
ATP6V0E2	155066	genome.wustl.edu	37	7	149575787	149575787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145230.2	+1	validated	p.A107V	1.000	14	0%	31	25.8%	61	24.5%	benign(0.001)	deleterious(0.03)	neutral(0.364)	HMMPfam_ATP_synt_H
LMBR1	64327	genome.wustl.edu	37	7	156480753	156480753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022458.3	-1	reviewed	p.A453V	1.000	306	0%	159	19.5%	15	0%	possibly_damaging(0.919)	deleterious(0.03)	deleterious(0.734)	NULL
EFCAB1	79645	genome.wustl.edu	37	8	49643197	49643197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024593.3	-1	validated	p.R74Q	1.000	263	0%	393	42%	3	33.3%	probably_damaging(0.987)	tolerated(0.61)	neutral(0.441)	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
KCNB2	9312	genome.wustl.edu	37	8	73849033	73849033	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004770.2	+1	reviewed	p.S481	0.000	73	1.4%	57	45.6%	0	-	-	-	-	HMMPfam_Kv2channel
CSMD3	114788	genome.wustl.edu	37	8	113678638	113678638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.C895Y	1.000	332	0%	179	39.1%	0	-	benign(0.007)	deleterious(0)	neutral(0.445)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TG	7038	genome.wustl.edu	37	8	133911051	133911051	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.T1076S	0.000	178	0%	139	46%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00211,superfamily_Thyroglobulin type-1 domain
EPPK1	83481	genome.wustl.edu	37	8	144942328	144942328	+	Silent	SNP	G	G	A	rs146777869	by1000genomes	TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031308.1	-1	validated	p.R1698	0.081	3	0.000	112	0.464	0	-	-	-	-	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
EPPK1	83481	genome.wustl.edu	37	8	144945174	144945174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031308.1	-1	validated	p.D750N	1.000	9	0.000	129	0.450	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
CYC1	1537	genome.wustl.edu	37	8	145151587	145151587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001916.3	+1	validated	p.P238T	1.000	30	0%	74	47.3%	203	41.8%	benign(0.018)	deleterious(0.02)	neutral(0.384)	HMMPfam_Cytochrom_C1,superfamily_Cytochrome c
FOXD4	2298	genome.wustl.edu	37	9	117000	117000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207305.3	-1	validated	p.A374T	0.013	83	0%	111	33.3%	2	50%	benign(0.118)	deleterious(0)	neutral(0.454)	NULL
TAF1L	138474	genome.wustl.edu	37	9	32633201	32633201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153809.2	-1	provisional	p.R793W	1.000	1102	0%	904	43.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DCTN3	11258	genome.wustl.edu	37	9	34617877	34617877	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447983	-1	known	p.N91	0.882	182	0%	212	42.5%	0	-	-	-	-	HMMPfam_Dynactin_p22
C9orf80	58493	genome.wustl.edu	37	9	115456311	115456311	+	Splice_Site	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000476599	-1	known	NULL	0.003	175	0%	115	26.1%	0	-	-	-	-	-
DFNB31	25861	genome.wustl.edu	37	9	117170230	117170230	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015404.3	-1	reviewed	p.S565	0.989	128	0%	155	14.8%	4	0%	-	-	-	NULL
STRBP	55342	genome.wustl.edu	37	9	125920700	125920700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018387.4	-1	validated	p.G282S	1.000	542	0%	316	47.2%	31	38.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DZF,HMMSmart_SM00572
ENG	2022	genome.wustl.edu	37	9	130605436	130605436	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114753.1	-1	reviewed	p.G52	1.000	65	0%	98	21.4%	32	21.8%	-	-	-	NULL
PTGES2	80142	genome.wustl.edu	37	9	130883534	130883534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025072.5	-1	reviewed	p.R342C	0.997	49	0%	124	18.5%	177	19.7%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_GST_C,superfamily_GST_C_like
LCN1	3933	genome.wustl.edu	37	9	138414010	138414010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002297.2	+1	reviewed	p.K70E	0.000	56	0%	54	40.7%	0	-	benign(0.026)	tolerated(0.57)	neutral(0.007)	HMMPfam_Lipocalin,superfamily_Calycin
FBXW5	54461	genome.wustl.edu	37	9	139836545	139836545	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018998.2	-1	reviewed	p.Y350F	1.000	37	0%	213	16.9%	85	28.2%	benign(0.207)	tolerated(0.34)	neutral(0.043)	superfamily_WD40 repeat-like
CACNA1B	774	genome.wustl.edu	37	9	140846741	140846741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000718.2	+1	validated	p.G328S	1.000	242	0%	303	15.5%	0	-	possibly_damaging(0.848)	deleterious(0)	deleterious(0.770)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ZMYND11	10771	genome.wustl.edu	37	10	226059	226059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000381591	+1	known	p.R36H	1.000	339	0%	194	15.5%	19	21%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
ADARB2	105	genome.wustl.edu	37	10	1262908	1262908	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018702.2	-1	reviewed	p.C555	1.000	31	0%	53	26.4%	0	-	-	-	-	HMMPfam_A_deamin,HMMSmart_ADEAMc
ITIH2	3698	genome.wustl.edu	37	10	7791261	7791261	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002216.2	+1	validated	p.F935	0.810	191	0%	214	42.5%	2	100%	-	-	-	NULL
RPP38	10557	genome.wustl.edu	37	10	15145353	15145353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001097590.1	+1	validated	p.R14C	0.661	78	0%	99	19.2%	18	22.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CUBN	8029	genome.wustl.edu	37	10	17145225	17145225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.S477P	0.004	220	0%	283	16.3%	0	-	possibly_damaging(0.819)	tolerated(0.18)	neutral(0.365)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
GPR158	57512	genome.wustl.edu	37	10	25887338	25887338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020752.2	+1	validated	p.R928H	0.003	174	0%	129	15.5%	0	-	possibly_damaging(0.861)	deleterious(0.02)	deleterious(0.716)	NULL
MYO3A	53904	genome.wustl.edu	37	10	26463197	26463197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017433.4	+1	reviewed	p.Q1335R	0.004	369	0%	402	43.5%	0	-	benign(0.261)	tolerated(0.4)	neutral(0.043)	superfamily_SSF52540
TET1	80312	genome.wustl.edu	37	10	70332337	70332337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030625.2	+1	validated	p.R81H	0.997	138	0%	126	35.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
NEUROG3	50674	genome.wustl.edu	37	10	71332229	71332229	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020999.3	-1	reviewed	p.R191*	0.016	18	0%	11	36.4%	0	-	-	-	-	NULL
AIFM2	84883	genome.wustl.edu	37	10	71874762	71874762	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032797.4	-1	reviewed	p.A295D	1.000	36	0%	70	15.7%	39	17.9%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_FAD/NAD(P)-binding domain
KIAA0913	23053	genome.wustl.edu	37	10	75557209	75557209	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015037.2	+1	validated	p.R1170*	1.000	83	0%	119	15.1%	29	6.8%	-	-	-	NULL
C10orf11	83938	genome.wustl.edu	37	10	77807059	77807059	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032024.3	+1	provisional	p.Y104	1.000	196	0%	225	24%	36	16.6%	-	-	-	superfamily_Outer arm dynein light chain 1
PTEN	5728	genome.wustl.edu	37	10	89692802	89692802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.P96T	1.000	838	0.1%	468	22.9%	17	11.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
RRP12	23223	genome.wustl.edu	37	10	99148070	99148070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015179.3	-1	validated	p.P319L	1.000	61	0%	138	47.1%	37	56.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
DMBT1	1755	genome.wustl.edu	37	10	124402766	124402766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007329.2	+1	reviewed	p.C2365Y	1.000	162	0%	175	20.6%	18	61.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
RIC8A	60626	genome.wustl.edu	37	11	209505	209505	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021932.4	+1	provisional	p.R77	0.613	34	0%	63	44.4%	47	46.8%	-	-	-	HMMPfam_Ric8
CDHR5	53841	genome.wustl.edu	37	11	618014	618014	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021924.4	-1	reviewed	p.L686	0.000	5	0.000	35	0.171	0	-	-	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1155589	1155589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000406844	+1	known	p.D93N	1.000	9	0.000	33	0.485	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWD,HMMSmart_SM00216
MUC5B	727897	genome.wustl.edu	37	11	1267706	1267706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.T3202M	0.000	174	0%	685	15.8%	33	21.2%	unknown(0)	-	-	NULL
CTR9	9646	genome.wustl.edu	37	11	10797148	10797148	+	Silent	SNP	G	G	A	rs182230438	by1000genomes	TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014633.3	+1	provisional	p.S1021	0.025	323	0%	232	39.2%	50	50%	-	-	-	NULL
KCNC1	3746	genome.wustl.edu	37	11	17793415	17793415	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112741.1	+1	reviewed	p.F258	1.000	589	0.2%	467	38.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
MUC15	143662	genome.wustl.edu	37	11	26587113	26587113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135091.1	-1	validated	p.G125D	0.000	566	0%	608	23%	0	-	probably_damaging(0.993)	tolerated(0.75)	neutral(0.452)	NULL
LOC120824	120824	genome.wustl.edu	37	11	49000454	49000454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_062300.6	-1	model	p.M236I	0.070	95	0%	98	52%	0	-	-	-	-	NULL
CCND1	595	genome.wustl.edu	37	11	69466019	69466019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053056.2	+1	reviewed	p.T286I	1.000	8	0.000	18	0.500	30	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STARD10	10809	genome.wustl.edu	37	11	72466074	72466074	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006645.2	-1	validated	p.A248	0.769	33	0%	43	39.5%	121	47.1%	-	-	-	NULL
FAT3	120114	genome.wustl.edu	37	11	92600211	92600211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.S3988L	1.000	13	0%	14	42.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
CWF19L2	143884	genome.wustl.edu	37	11	107312295	107312295	+	Silent	SNP	T	T	C	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152434.2	-1	validated	p.S168	0.831	965	0%	417	39.6%	2	0%	-	-	-	NULL
FOXR1	283150	genome.wustl.edu	37	11	118849746	118849746	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181721.2	+1	reviewed	p.G72	0.000	144	0%	141	37.6%	0	-	-	-	-	NULL
ARHGEF12	23365	genome.wustl.edu	37	11	120278499	120278499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015313.1	+1	reviewed	p.E37K	1.000	540	0%	344	48%	6	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ETS1	2113	genome.wustl.edu	37	11	128354833	128354833	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143820.1	-1	validated	p.Y249	1.000	487	0%	305	45.2%	10	20%	-	-	-	NULL
TEAD4	7004	genome.wustl.edu	37	12	3104123	3104123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003213.2	+1	reviewed	p.R64H	1.000	45	0%	74	43.2%	22	36.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TEA,HMMSmart_TEA
COPS7A	50813	genome.wustl.edu	37	12	6838576	6838576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016319.2	+1	validated	p.R164H	1.000	183	0%	157	16.6%	112	23.2%	benign(0.158)	tolerated(0.12)	neutral(0.275)	HMMSmart_SM00088
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	byCluster	TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.G12D	1.000	250	0%	344	20.6%	8	12.5%	possibly_damaging(0.886)	deleterious(0)	deleterious(0.791)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTHLH	5744	genome.wustl.edu	37	12	28116635	28116635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198965.1	-1	reviewed	p.R57Q	0.873	246	0%	177	47.5%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Parathyroid,HMMSmart_SM00087
PUS7L	83448	genome.wustl.edu	37	12	44124341	44124341	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098614.1	-1	validated	p.P648	0.611	578	0%	389	19%	2	0%	-	-	-	HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom
OR10AD1	121275	genome.wustl.edu	37	12	48596997	48596997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004134.1	-1	provisional	p.L27I	0.568	288	0%	151	15.2%	0	-	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	superfamily_Family A G protein-coupled receptor-like
FAM186A	121006	genome.wustl.edu	37	12	50746182	50746182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145475.1	-1	provisional	p.A1478V	0.000	390	0%	373	10.7%	0	-	possibly_damaging(0.454)	tolerated(0.17)	neutral(0.207)	NULL
KRT7	3855	genome.wustl.edu	37	12	52639249	52639249	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005556.3	+1	reviewed	p.A346	0.010	38	0%	45	44.4%	81	38.2%	-	-	-	HMMPfam_Filament
KRT81	3887	genome.wustl.edu	37	12	52680144	52680144	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002281.3	-1	reviewed	p.C471	0.246	29	0%	24	29.2%	0	-	-	-	-	NULL
OR10P1	121130	genome.wustl.edu	37	12	56031574	56031574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206899.1	+1	provisional	p.R300M	0.000	94	0%	87	16.1%	0	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	superfamily_SSF81321
SRGAP1	57522	genome.wustl.edu	37	12	64519843	64519843	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020762.2	+1	validated	p.L771	1.000	362	0%	348	14.9%	0	-	-	-	-	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain
PTPRB	5787	genome.wustl.edu	37	12	70964964	70964964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109754.1	-1	reviewed	p.L1071P	1.000	222	0%	272	21.3%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
STAB2	55576	genome.wustl.edu	37	12	104067696	104067696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017564.9	+1	reviewed	p.V795I	0.236	102	0%	113	43.4%	0	-	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
TCTN1	79600	genome.wustl.edu	37	12	111085688	111085688	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082538.2	+1	reviewed	p.P590	0.120	134	0%	175	21.1%	69	18.8%	unknown(0)	-	-	NULL
TMEM132D	121256	genome.wustl.edu	37	12	130184746	130184746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133448.2	-1	validated	p.V193M	0.996	10	0%	24	41.7%	0	-	probably_damaging(0.988)	tolerated(0.09)	deleterious(0.734)	NULL
CDX2	1045	genome.wustl.edu	37	13	28537390	28537390	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001265.3	-1	validated	p.P268	1.000	107	0%	236	44.1%	4	75%	-	-	-	NULL
MTUS2	23281	genome.wustl.edu	37	13	29600584	29600584	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033602.2	+1	validated	p.T593	0.000	139	0%	115	33%	0	-	-	-	-	NULL
GTF2F2	2963	genome.wustl.edu	37	13	45725855	45725855	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004128.2	+1	validated	p.I65F	1.000	460	0%	336	45.5%	44	54.5%	possibly_damaging(0.455)	tolerated(0.07)	neutral(0.468)	HMMPfam_TFIIF_beta,superfamily_TFIIF_interactn
CDADC1	81602	genome.wustl.edu	37	13	49854644	49854644	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030911.2	+1	validated	e8-1	1.000	359	0%	171	47.4%	0	-	-	-	-	-
DACH1	1602	genome.wustl.edu	37	13	72131220	72131220	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080759.4	-1	reviewed	p.P502	0.998	349	0%	362	42.5%	5	20%	-	-	-	NULL
SLITRK5	26050	genome.wustl.edu	37	13	88329881	88329881	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015567.1	+1	validated	p.G746	1.000	42	0%	39	38.5%	0	-	-	-	-	NULL
SLC15A1	6564	genome.wustl.edu	37	13	99358445	99358445	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005073.3	-1	reviewed	p.N404K	0.000	1037	0.1%	550	14.5%	3	33.3%	benign(0.002)	tolerated(0.2)	neutral(0.049)	HMMPfam_PTR2,superfamily_MFS general substrate transporter
NALCN	259232	genome.wustl.edu	37	13	102047577	102047577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052867.2	-1	validated	p.T83M	1.000	146	0%	138	15.9%	0	-	probably_damaging(1)	tolerated(0.33)	deleterious(0.524)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
TEP1	7011	genome.wustl.edu	37	14	20863724	20863724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007110.4	-1	reviewed	p.R605C	0.000	352	0%	284	20.4%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_TROVE
HECTD1	25831	genome.wustl.edu	37	14	31585572	31585572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015382.2	-1	validated	p.R1830C	1.000	348	0.3%	299	14%	13	7.6%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
KIAA0586	9786	genome.wustl.edu	37	14	58924494	58924494	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014749.3	+1	validated	p.S460R	0.000	516	0%	369	40.9%	4	25%	benign(0.282)	tolerated(0.1)	neutral(0.373)	NULL
C14orf38	729665	genome.wustl.edu	37	14	59992037	59992037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000281581	-1	known	p.A653V	0.000	1853	0%	563	45.1%	0	-	benign(0.001)	tolerated(1)	-	NULL
SLC10A1	6554	genome.wustl.edu	37	14	70263788	70263788	+	Missense_Mutation	SNP	C	C	T	rs148905100	by1000genomes	TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003049.3	-1	validated	p.V29I	0.000	142	0%	168	13.7%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
SIPA1L1	26037	genome.wustl.edu	37	14	72152328	72152328	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015556.1	+1	provisional	p.D1118	0.749	102	0%	56	17.9%	5	40%	-	-	-	NULL
TC2N	123036	genome.wustl.edu	37	14	92268600	92268600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128595.1	-1	validated	p.S156L	1.000	150	0%	181	19.9%	16	25%	possibly_damaging(0.727)	deleterious(0)	deleterious(0.709)	NULL
UNC79	57578	genome.wustl.edu	37	14	94173206	94173206	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020818.3	+1	validated	p.E2445*	1.000	187	0%	180	17.2%	0	-	-	-	-	NULL
MAGEL2	54551	genome.wustl.edu	37	15	23890252	23890252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019066.4	-1	reviewed	p.R277C	0.003	44	0%	47	19.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GABRA5	2558	genome.wustl.edu	37	15	27188418	27188418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000810.3	+1	reviewed	p.P312S	1.000	83	0%	64	46.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
TRPM1	4308	genome.wustl.edu	37	15	31294507	31294507	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002420.4	-1	reviewed	p.R1444	0.003	301	0.3%	209	47.8%	0	-	-	-	-	NULL
LCMT2	9836	genome.wustl.edu	37	15	43621889	43621889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014793.3	-1	reviewed	p.G267C	0.149	18	0%	43	27.9%	5	0%	benign(0.002)	tolerated(0.08)	neutral(0.300)	HMMPfam_LCM,superfamily_SSF53335
GNB5	10681	genome.wustl.edu	37	15	52446255	52446255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016194.3	-1	reviewed	p.R86Q	1.000	169	0%	154	14.9%	31	16.1%	benign(0.217)	tolerated(0.32)	neutral(0.045)	superfamily_WD40 repeat-like
NARG2	79664	genome.wustl.edu	37	15	60741457	60741457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024611.4	-1	validated	p.S570I	0.001	322	0%	259	12%	12	16.6%	benign(0.16)	deleterious(0.04)	neutral(0.363)	NULL
SEMA7A	8482	genome.wustl.edu	37	15	74703179	74703179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003612.3	-1	reviewed	p.C596Y	1.000	61	0%	151	11.9%	14	7.1%	probably_damaging(0.998)	tolerated(0.3)	deleterious(0.503)	HMMSmart_IG,superfamily_SSF48726
ALPK3	57538	genome.wustl.edu	37	15	85411452	85411452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020778.4	+1	validated	p.P1830L	0.960	60	0%	81	21%	16	56.2%	benign(0.195)	deleterious(0.02)	neutral(0.402)	superfamily_Protein kinase-like (PK-like)
AKAP13	11214	genome.wustl.edu	37	15	86123779	86123779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006738.4	+1	reviewed	p.G827D	0.000	88	0%	61	47.5%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RGS11	8786	genome.wustl.edu	37	16	321412	321412	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183337.1	-1	reviewed	p.S245	0.366	52	0%	128	48.4%	0	-	-	-	-	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
LMF1	64788	genome.wustl.edu	37	16	1004463	1004463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022773.2	-1	reviewed	p.G133R	0.997	33	0%	130	19.2%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CLCN7	1186	genome.wustl.edu	37	16	1501651	1501651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001287.4	-1	reviewed	p.V474M	1.000	10	0%	72	37.5%	27	33.3%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Voltage_CLC,superfamily_Cl-channel_core
SLX4	84464	genome.wustl.edu	37	16	3640473	3640473	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032444.2	-1	provisional	p.L1056fs	0.014	-	-	-	-	-	-	-	-	-	NULL
PYDC1	260434	genome.wustl.edu	37	16	31228130	31228130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152901.2	-1	provisional	p.R74C	0.000	14	0%	25	24%	0	-	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_PAAD_DAPIN,superfamily_DEATH domain
ZNF423	23090	genome.wustl.edu	37	16	49671396	49671396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015069.2	-1	reviewed	p.T556M	0.901	103	0%	277	19.1%	0	-	possibly_damaging(0.732)	deleterious(0.01)	deleterious(0.673)	NULL
NLRC5	84166	genome.wustl.edu	37	16	57111676	57111677	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032206.3	+1	validated	p.E1656fs	0.000:0.001	-	-	-	-	-	-	-	-	-	HMMSmart_SM00368,HMMSmart_SM00367,superfamily_RNI-like
CES3	23491	genome.wustl.edu	37	16	67006865	67006865	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024922.4	+1	validated	p.W543*	0.000	67	0%	113	33.6%	17	35.2%	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
CTCF	10664	genome.wustl.edu	37	16	67662451	67662451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.R566H	1.000	404	0%	355	46.5%	35	74.2%	possibly_damaging(0.848)	tolerated(0.61)	neutral(0.330)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TSNAXIP1	55815	genome.wustl.edu	37	16	67859094	67859094	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018430.2	+1	validated	p.R191*	0.999	64	1.6%	112	13.4%	5	20%	-	-	-	NULL
ATXN1L	342371	genome.wustl.edu	37	16	71885093	71885093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137675.2	+1	validated	p.R484W	1.000	139	0%	241	22%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AXH,superfamily_Ataxin-1_HBP1
MAP2K4	6416	genome.wustl.edu	37	17	12044509	12044509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003010.2	+1	reviewed	p.A378T	1.000	483	0%	348	39.7%	7	42.8%	possibly_damaging(0.905)	deleterious(0)	deleterious(0.804)	superfamily_Kinase_like
UTP6	55813	genome.wustl.edu	37	17	30221991	30221993	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018428.2	-1	validated	p.R72in_frame_del	0.807:0.980:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_U3_assoc_6
GPATCH8	23131	genome.wustl.edu	37	17	42476381	42476381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002909.1	-1	validated	p.R1022C	0.876	286	0%	172	19.8%	11	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TRIM25	7706	genome.wustl.edu	37	17	54969559	54969559	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005082.4	-1	reviewed	p.T465	0.049	66	0%	66	18.2%	12	8.3%	-	-	-	HMMSmart_SM00589
MPO	4353	genome.wustl.edu	37	17	56349219	56349219	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000250.1	-1	reviewed	p.P609	0.009	26	0%	63	41.3%	0	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
BRIP1	83990	genome.wustl.edu	37	17	59878795	59878795	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032043.1	-1	reviewed	p.S320T	1.000	591	0%	364	47%	1	100%	benign(0.027)	tolerated(0.24)	neutral(0.039)	HMMSmart_SM00488,HMMPfam_DEAD_2,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX42	11325	genome.wustl.edu	37	17	61889430	61889430	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007372.2	+1	reviewed	p.E513*	1.000	324	0%	262	12.6%	31	0%	-	-	-	HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
TEX2	55852	genome.wustl.edu	37	17	62291282	62291282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018469.3	-1	validated	p.S99F	0.885	73	0%	107	15%	3	33.3%	probably_damaging(0.961)	deleterious(0.04)	deleterious(0.753)	NULL
GNA13	10672	genome.wustl.edu	37	17	63010815	63010815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006572.4	-1	validated	p.R232C	1.000	367	0%	243	22.2%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
SDK2	54549	genome.wustl.edu	37	17	71395349	71395349	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144952.1	-1	provisional	p.Y1017	0.967	29	0%	64	51.6%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
RECQL5	9400	genome.wustl.edu	37	17	73654449	73654449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004259.5	-1	validated	p.R360C	1.000	77	1.3%	136	20.6%	15	53.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TBC1D16	125058	genome.wustl.edu	37	17	77987190	77987190	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019020.2	-1	provisional	p.Q53*	1.000	10	0%	26	42.3%	13	61.5%	-	-	-	NULL
LRRC30	339291	genome.wustl.edu	37	18	7231617	7231617	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105581.1	+1	provisional	p.D161N	0.977	61	0%	78	16.7%	0	-	benign(0.136)	tolerated(0.3)	neutral(0.040)	HMMPfam_LRR_1,superfamily_SSF52058
CTAGE1	64693	genome.wustl.edu	37	18	19997364	19997364	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172241.2	-1	validated	p.A137	0.001	986	0%	415	21.4%	0	-	-	-	-	NULL
DSG3	1830	genome.wustl.edu	37	18	29045299	29045299	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001944.2	+1	reviewed	p.N430	0.003	301	0%	202	41.1%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
KATNAL2	83473	genome.wustl.edu	37	18	44584616	44584616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031303.2	+1	validated	p.D43N	0.817	261	0%	294	40.8%	6	50%	benign(0.002)	tolerated(0.5)	neutral(0.010)	NULL
ZNF532	55205	genome.wustl.edu	37	18	56651407	56651407	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018181.4	+1	validated	p.C1205	1.000	86	0%	54	44.4%	25	28%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
WDR18	57418	genome.wustl.edu	37	19	985937	985937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024100.3	+1	reviewed	p.V95I	0.495	16	0%	92	28.3%	121	14.8%	benign(0.045)	tolerated(0.72)	neutral(0.004)	HMMSmart_WD40,superfamily_WD40_like
PTPRS	5802	genome.wustl.edu	37	19	5221156	5221156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002850.3	-1	reviewed	p.S1104G	1.000	33	0%	119	14.3%	38	21%	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FUT5	2527	genome.wustl.edu	37	19	5867492	5867492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002034.2	-1	validated	p.T82M	0.758	13	0%	64	15.6%	1	0%	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	HMMPfam_Glyco_transf_10
MUC16	94025	genome.wustl.edu	37	19	9067527	9067527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.G6640D	0.000	547	0%	267	19.9%	6	0%	unknown(0)	-	-	NULL
NWD1	284434	genome.wustl.edu	37	19	16860863	16860863	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007525.2	+1	validated	p.S335	0.000	20	0%	33	42.4%	1	100%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
USHBP1	83878	genome.wustl.edu	37	19	17362437	17362437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031941.3	-1	validated	p.R626W	0.000	19	0%	87	46%	6	16.6%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	NULL
DDX49	54555	genome.wustl.edu	37	19	19035777	19035777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019070.4	+1	validated	p.T339M	1.000	31	0%	95	41.1%	106	49%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
ATP13A1	57130	genome.wustl.edu	37	19	19756473	19756473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020410.2	-1	validated	p.V1163M	1.000	21	0%	58	41.4%	236	39.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RBM42	79171	genome.wustl.edu	37	19	36128138	36128138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024321.3	+1	provisional	p.P405L	1.000	85	0%	91	47.3%	237	41.3%	unknown(0)	deleterious(0)	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
SIRT2	22933	genome.wustl.edu	37	19	39384477	39384477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012237.2	-1	reviewed	p.A32T	0.002	105	0%	139	53.2%	24	75%	unknown(0)	tolerated(0.49)	-	NULL
HIPK4	147746	genome.wustl.edu	37	19	40886516	40886516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144685.3	-1	provisional	p.I461T	0.000	67	0%	43	16.3%	0	-	benign(0)	tolerated(1)	-	NULL
ATP1A3	478	genome.wustl.edu	37	19	42474633	42474633	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152296.3	-1	reviewed	p.P775	0.121	611	0.2%	345	48.4%	0	-	-	-	-	superfamily_SSF81665
KLK6	5653	genome.wustl.edu	37	19	51466770	51466770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012964.1	-1	reviewed	p.R78Q	0.001	55	0%	125	41.6%	0	-	benign(0)	tolerated(0.68)	neutral(0.002)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
VSIG10L	147645	genome.wustl.edu	37	19	51840493	51840493	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000335624	-1	known	p.A323	0.104	136	0%	99	40.4%	1	100%	-	-	-	NULL
MBOAT7	79143	genome.wustl.edu	37	19	54684695	54684695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024298.3	-1	reviewed	p.V217M	1.000	4	0.000	20	0.650	26	57.6%	benign(0.414)	deleterious(0.03)	deleterious(0.498)	HMMPfam_MBOAT
PPP6R1	22870	genome.wustl.edu	37	19	55758375	55758375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014931.3	-1	validated	p.V33M	1.000	18	0%	29	24.1%	16	12.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
EPN1	29924	genome.wustl.edu	37	19	56206349	56206349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130071.1	+1	validated	p.G594R	0.988	31	0%	42	50%	140	24.2%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
ZSCAN5B	342933	genome.wustl.edu	37	19	56701381	56701381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080456.2	-1	validated	p.G435R	0.000	548	0%	317	44.5%	0	-	possibly_damaging(0.908)	tolerated(0.22)	neutral(0.403)	superfamily_SSF57667
ZFP28	140612	genome.wustl.edu	37	19	57065671	57065671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020828.1	+1	provisional	p.D506G	0.671	249	0%	167	16.2%	2	50%	probably_damaging(0.976)	tolerated(0.19)	neutral(0.467)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SMOX	54498	genome.wustl.edu	37	20	4162837	4162837	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175839.1	+1	reviewed	p.S237	0.001	31	0%	36	22.2%	9	22.2%	-	-	-	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain
BPIFB1	92747	genome.wustl.edu	37	20	31890779	31890779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033197.2	+1	reviewed	p.E347K	0.000	237	0%	131	42.7%	0	-	benign(0.086)	tolerated(0.61)	neutral(0.010)	superfamily_Bactericidal permeability-increasing protein BPI
ITCH	83737	genome.wustl.edu	37	20	33077688	33077688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031483.4	+1	reviewed	p.R759H	1.000	358	0%	498	42.2%	11	54.5%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
NCOA6	23054	genome.wustl.edu	37	20	33328871	33328871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.R1730Q	0.905	117	0%	280	41.1%	29	51.7%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
C20orf111	51526	genome.wustl.edu	37	20	42826067	42826067	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016470.6	-1	provisional	p.D168	0.000	244	0%	232	13.8%	52	7.6%	-	-	-	HMMPfam_DUF776
PCIF1	63935	genome.wustl.edu	37	20	44576373	44576373	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022104.3	+1	validated	p.S698	0.999	9	0.000	25	0.360	91	53.8%	-	-	-	NULL
SULF2	55959	genome.wustl.edu	37	20	46331358	46331358	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018837.3	-1	validated	p.K158*	1.000	70	0%	66	19.7%	5	20%	-	-	-	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
PTGIS	5740	genome.wustl.edu	37	20	48129747	48129747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000961.3	-1	reviewed	p.R359H	0.999	197	0%	121	22.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
SALL4	57167	genome.wustl.edu	37	20	50408175	50408175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020436.3	-1	reviewed	p.G283C	0.765	50	0%	81	23.5%	0	-	possibly_damaging(0.928)	deleterious(0.02)	deleterious(0.758)	NULL
YTHDF1	54915	genome.wustl.edu	37	20	61834477	61834477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017798.3	-1	validated	p.G272D	1.000	11	0%	32	21.9%	23	17.3%	benign(0.398)	deleterious(0.03)	deleterious(0.492)	NULL
CHAF1B	8208	genome.wustl.edu	37	21	37785268	37785268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005441.2	+1	reviewed	p.P383H	0.991	244	0%	143	15.4%	16	25%	probably_damaging(1)	tolerated(0.23)	deleterious(0.541)	superfamily_WD40_like
MX2	4600	genome.wustl.edu	37	21	42749779	42749779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002463.1	+1	reviewed	p.D105N	1.000	43	0%	81	46.9%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_DYNc,superfamily_SSF52540
DNMT3L	29947	genome.wustl.edu	37	21	45671549	45671549	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013369.2	-1	reviewed	p.Y242	0.979	50	0%	82	18.3%	0	-	-	-	-	NULL
HIRA	7290	genome.wustl.edu	37	22	19393342	19393342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003325.3	-1	reviewed	p.R122W	1.000	39	0%	85	17.6%	13	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
C22orf25	128989	genome.wustl.edu	37	22	20043533	20043533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152906.4	+1	validated	p.P150S	0.975	189	0%	215	19.1%	9	11.1%	possibly_damaging(0.741)	tolerated(0.17)	neutral(0.331)	HMMPfam_DUF833
NEFH	4744	genome.wustl.edu	37	22	29886096	29886096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021076.3	+1	reviewed	p.P823T	0.991	161	0%	166	26.5%	0	-	unknown(0)	deleterious(0.01)	-	NULL
PES1	23481	genome.wustl.edu	37	22	30975268	30975268	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000441668	-1	known	p.G66R	0.873	84	0%	224	40.2%	104	43.2%	-	-	-	NULL
NCF4	4689	genome.wustl.edu	37	22	37271769	37271769	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415063	+1	known	p.R98*	0.269	235	0.4%	97	20.6%	5	0%	-	-	-	superfamily_SH3-domain
GGA1	26088	genome.wustl.edu	37	22	38017631	38017631	+	Silent	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013365.4	+1	reviewed	p.A179	0.985	35	0%	71	14.1%	41	21.9%	-	-	-	superfamily_GAT-like domain
KCNJ4	3761	genome.wustl.edu	37	22	38823367	38823367	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004981.1	-1	reviewed	p.S257	0.135	33	0%	105	47.6%	0	-	-	-	-	HMMPfam_IRK,superfamily_Ig_E-set
C22orf40	150383	genome.wustl.edu	37	22	46643085	46643085	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207327.4	-1	validated	p.P49	1.000	53	0%	122	10.7%	12	25%	-	-	-	HMMPfam_C6_DPF
TTC38	55020	genome.wustl.edu	37	22	46668266	46668266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017931.2	+1	validated	p.G49D	1.000	58	0%	153	20.9%	22	27.2%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
SBF1	6305	genome.wustl.edu	37	22	50903452	50903452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002972.2	-1	validated	p.R437H	1.000	49	0%	105	16.2%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TLR8	51311	genome.wustl.edu	37	X	12937829	12937829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138636.4	+1	reviewed	p.L224I	0.584	144	0%	80	38.8%	0	-	probably_damaging(0.964)	deleterious(0.04)	deleterious(0.755)	HMMPfam_LRR_1,superfamily_SSF52047
REPS2	9185	genome.wustl.edu	37	X	17043253	17043253	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004726.2	+1	reviewed	p.V206	1.000	406	0%	288	39.9%	3	0%	-	-	-	NULL
GAGE1	2543	genome.wustl.edu	37	X	49368385	49368385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001468.3	+1	reviewed	p.T107M	0.000	789	0%	496	11.9%	0	-	benign(0.008)	tolerated(0.32)	neutral(0.024)	HMMPfam_GAGE
COL4A5	1287	genome.wustl.edu	37	X	107936002	107936002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033380.1	+1	reviewed	p.R1518H	1.000	365	0%	344	16.9%	24	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold
LRCH2	57631	genome.wustl.edu	37	X	114468287	114468287	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020871.3	-1	validated	p.S106	0.118	66	0%	68	47.1%	0	-	-	-	-	superfamily_SSF52058
NKRF	55922	genome.wustl.edu	37	X	118724258	118724258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017544.3	-1	reviewed	p.R377H	1.000	171	0.6%	281	37.7%	6	0%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
SLC9A6	10479	genome.wustl.edu	37	X	135106589	135106589	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042537.1	+1	reviewed	p.T521	0.102	739	0.1%	610	40.7%	9	88.8%	-	-	-	HMMPfam_Na_H_Exchanger
FAM58A	92002	genome.wustl.edu	37	X	152858167	152858167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000276345	-1	known	p.L150I	0.823	29	0%	55	23.6%	36	47.2%	possibly_damaging(0.653)	deleterious(0.01)	deleterious(0.635)	HMMSmart_CYCLIN,superfamily_Cyclin_like
PNCK	139728	genome.wustl.edu	37	X	152937105	152937105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039582.3	-1	validated	p.T229M	0.979	82	0%	203	20.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ENSG00000203870	0	genome.wustl.edu	37	X	154059066	154059066	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JV-01	TCGA-B5-A0JV-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000369529	-1	known	p.E22	0.000	576	0%	348	17.8%	0	-	-	-	-	NULL
