Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
EIF4G3	8672	genome.wustl.edu	37	1	21191728	21191728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003760.3	-1	validated	p.G828S	1.000	478	0%	51	60.8%	23	73.9%	probably_damaging(0.996)	tolerated(0.19)	deleterious(0.511)	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat
ZC3H12A	80149	genome.wustl.edu	37	1	37947347	37947347	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025079.2	+1	validated	p.N243K	0.957	417	0%	637	42.7%	13	53.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PLK3	1263	genome.wustl.edu	37	1	45270453	45270453	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004073.2	+1	validated	e13+2	0.998	131	0%	268	39.2%	4	50%	-	-	-	-
AGT	183	genome.wustl.edu	37	1	230846279	230846279	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000029.3	-1	reviewed	p.V106	0.058	243	0%	309	41.1%	4	0%	-	-	-	HMMPfam_Serpin,superfamily_Serpins
UGP2	7360	genome.wustl.edu	37	2	64114749	64114807	+	Splice_Site	DEL	TTGGTTAAATTAGGCAGTTCTTTTACGAAGGTACGTAACTATAAAGATATGTGAGTTCA	TTGGTTAAATTAGGCAGTTCTTTTACGAAGGTACGTAACTATAAAGATATGTGAGTTCA	-	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	TTGGTTAAATTAGGCAGTTCTTTTACGAAGGTACGTAACTATAAAGATATGTGAGTTCA	TTGGTTAAATTAGGCAGTTCTTTTACGAAGGTACGTAACTATAAAGATATGTGAGTTCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006759.3	+1	reviewed	e9-1	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	-
DNAJB2	3300	genome.wustl.edu	37	2	220145359	220145359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006736.5	+1	validated	p.A42V	1.000	226	0%	312	29.2%	55	41.8%	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain
SLC4A7	9497	genome.wustl.edu	37	3	27427431	27427432	+	Frame_Shift_Ins	INS	-	-	TTCTCTTTTCCTTTCTGTCTTGATCTTAATCTTTCTTTTTCTTTTTGTCATCTTCTTTCTTTTTCTTACTTTCT	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003615.3	-1	validated	p.K1143fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
HTR1F	3355	genome.wustl.edu	37	3	88040175	88040175	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000866.3	+1	validated	p.G92	0.113	267	0%	58	29.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
CLSTN2	64084	genome.wustl.edu	37	3	140277628	140277628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022131.2	+1	validated	p.T657I	0.004	146	0%	25	40%	0	-	benign(0.001)	tolerated(0.4)	neutral(0.016)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916891	178916891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.R93Q	1.000	188	0.5%	70	58.6%	10	70%	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
PIK3CA	5290	genome.wustl.edu	37	3	178951957	178951957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.M1004I	1.000	321	0%	82	59.8%	44	77.2%	benign(0.008)	deleterious(0.02)	neutral(0.383)	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like
BOD1L	259282	genome.wustl.edu	37	4	13605971	13605971	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148894.2	-1	validated	p.Q851H	1.000	697	0%	136	47.8%	4	75%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_SSF81995
TBCK	93627	genome.wustl.edu	37	4	107154174	107154174	+	Silent	SNP	T	T	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033115.3	-1	validated	p.S457	0.995	298	0.7%	34	32.4%	12	41.6%	-	-	-	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
DCHS2	54798	genome.wustl.edu	37	4	155410552	155410552	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142552.1	-1	validated	p.T652	0.001	97	0%	159	11.3%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
FOXP4	116113	genome.wustl.edu	37	6	41557909	41557909	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012426.1	+1	reviewed	e10+1	1.000	58	0%	122	41.8%	1	100%	-	-	-	-
FOXO3	2309	genome.wustl.edu	37	6	108985092	108985092	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001455.3	+1	reviewed	p.A352	0.997	66	3%	46	26.1%	28	0%	-	-	-	NULL
NFE2L3	9603	genome.wustl.edu	37	7	26224435	26224435	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004289.6	+1	reviewed	p.R373fs	0.000	-	-	-	-	-	-	-	-	-	NULL
WDR60	55112	genome.wustl.edu	37	7	158734723	158734723	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018051.4	+1	validated	p.W962C	1.000	38	0%	19	57.9%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
MCM4	4173	genome.wustl.edu	37	8	48878888	48878888	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005914.2	+1	reviewed	p.P325R	1.000	50	0%	143	36.4%	101	27.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_MCM,superfamily_Nucleic_acid_OB
HEATR7A	727957	genome.wustl.edu	37	8	145246629	145246629	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032450.2	+1	provisional	p.A242	0.049	77	0%	201	25.4%	23	17.3%	-	-	-	superfamily_ARM repeat
IARS	3376	genome.wustl.edu	37	9	95050494	95050494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002161.4	-1	reviewed	p.I64V	1.000	274	0%	102	21.6%	28	53.5%	possibly_damaging(0.705)	tolerated(0.13)	deleterious(0.506)	HMMPfam_tRNA-synt_1,superfamily_SSF52374
FRMD4A	55691	genome.wustl.edu	37	10	13735744	13735744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342409	-1	known	p.A440V	0.000	20	0%	13	38.5%	0	-	unknown(0)	-	-	NULL
ZNF25	219749	genome.wustl.edu	37	10	38246020	38246020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145011.2	-1	provisional	p.A56T	0.000	397	0%	136	26.5%	1	0%	benign(0)	tolerated(0.16)	neutral(0.059)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
PLCE1	51196	genome.wustl.edu	37	10	96076346	96076373	+	Frame_Shift_Del	DEL	TATTTTTTGATGGAAGAAAAATATTTTA	TATTTTTTGATGGAAGAAAAATATTTTA	-	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	TATTTTTTGATGGAAGAAAAATATTTTA	TATTTTTTGATGGAAGAAAAATATTTTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016341.3	+1	reviewed	p.F2060fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
OR5P2	120065	genome.wustl.edu	37	11	7818013	7818013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153444.1	-1	provisional	p.F159L	0.000	122	0%	24	41.7%	0	-	benign(0.001)	tolerated(0.95)	-	HMMPfam_7tm_1,superfamily_SSF81321
SCUBE2	57758	genome.wustl.edu	37	11	9111264	9111264	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020974.2	-1	validated	p.R82	0.997	290	0%	435	38.2%	1	0%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
PTPRJ	5795	genome.wustl.edu	37	11	48157628	48157628	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002843.3	+1	reviewed	p.V551	0.010	391	0.3%	119	28.6%	1	100%	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
OR4X1	390113	genome.wustl.edu	37	11	48286000	48286000	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004726.1	+1	provisional	p.L196	0.000	430	0%	99	33.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
PVRL1	5818	genome.wustl.edu	37	11	119549377	119549377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002855.4	-1	reviewed	p.V60M	1.000	76	0%	79	49.4%	4	0%	probably_damaging(1)	tolerated(0.22)	deleterious(0.542)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
GLIPR1	11010	genome.wustl.edu	37	12	75875788	75875789	+	Frame_Shift_Ins	INS	-	-	TGACCTAGAATTCATTCACTGGGAGAGAACATCTGGACTGGGTCTGTGCCCATTTTTTCTGTGTCTTCCGCCATCACAAACT	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006851.2	+1	reviewed	p.W117fs	0.991:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SCP,HMMPfam_SCP,superfamily_SCP-like_extracellular
NID2	22795	genome.wustl.edu	37	14	52507530	52507530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007361.3	-1	validated	p.P622L	1.000	449	0.2%	139	46.8%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like
ZFYVE19	84936	genome.wustl.edu	37	15	41105602	41105602	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077268.1	+1	validated	p.R366T	1.000	129	0%	69	21.7%	10	20%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
CLPX	10845	genome.wustl.edu	37	15	65451045	65451045	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006660.3	-1	provisional	p.G254*	1.000	589	0%	92	27.2%	27	7.4%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
LRRK1	79705	genome.wustl.edu	37	15	101605860	101605860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024652.3	+1	validated	p.V1740M	0.002	166	1.8%	224	37.5%	13	61.5%	possibly_damaging(0.801)	deleterious(0)	deleterious(0.746)	NULL
CACNA1H	8912	genome.wustl.edu	37	16	1265066	1265066	+	Missense_Mutation	SNP	G	G	A	rs149367557	by1000genomes	TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021098.2	+1	reviewed	p.R1675Q	1.000	809	0%	797	63.4%	1	0%	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ASPHD1	253982	genome.wustl.edu	37	16	29912847	29912847	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181718.3	+1	validated	p.Q185	1.000	83	0%	187	40.1%	0	-	-	-	-	NULL
CES3	23491	genome.wustl.edu	37	16	67000757	67000757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024922.4	+1	validated	p.L351I	0.387	132	0%	84	17.9%	10	50%	probably_damaging(0.979)	tolerated(1)	neutral(0.422)	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
JPH3	57338	genome.wustl.edu	37	16	87637893	87637894	+	In_Frame_Ins	INS	-	-	CTG	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000301008	+1	known	p.148in_frame_insA	0.000:0.030	-	-	-	-	-	-	-	-	-	NULL
TP53	7157	genome.wustl.edu	37	17	7577022	7577022	+	Nonsense_Mutation	SNP	G	G	A	rs121913344		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.R306*	1.000	361	0%	192	62%	26	53.8%	-	-	-	NULL
KRT32	3882	genome.wustl.edu	37	17	39620625	39620625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002278.3	-1	reviewed	p.D260G	1.000	202	0%	127	44.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
XYLT2	64132	genome.wustl.edu	37	17	48433313	48433313	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022167.2	+1	reviewed	p.V420	0.999	184	0%	332	40.1%	26	57.6%	-	-	-	HMMPfam_Branch
ARL16	339231	genome.wustl.edu	37	17	79648803	79648803	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040025.1	-1	validated	p.R177G	0.029	62	0%	162	15.4%	22	27.2%	possibly_damaging(0.847)	tolerated(0.2)	neutral(0.374)	HMMPfam_Arf,superfamily_SSF52540
ZNF611	81856	genome.wustl.edu	37	19	53209650	53209650	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030972.3	-1	validated	p.Q220E	0.018	483	0%	146	36.3%	2	100%	possibly_damaging(0.804)	tolerated(0.74)	neutral(0.304)	superfamily_C2H2 and C2HC zinc fingers
CHD6	84181	genome.wustl.edu	37	20	40053975	40053975	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032221.3	-1	reviewed	p.R1397G	1.000	338	0%	81	32.1%	13	46.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SULF2	55959	genome.wustl.edu	37	20	46288475	46288475	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018837.3	-1	validated	e18-1	1.000	306	0%	124	37.9%	2	100%	-	-	-	-
FAM65C	140876	genome.wustl.edu	37	20	49226165	49226165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080829.2	-1	predicted	p.R170H	0.992	12	0%	32	28.1%	0	-	possibly_damaging(0.843)	deleterious(0.01)	deleterious(0.729)	NULL
SLC5A1	6523	genome.wustl.edu	37	22	32480899	32480899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000343.3	+1	reviewed	p.R300C	1.000	230	0%	53	58.5%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SSF
ENSG00000210082	0	genome.wustl.edu	37	MT	2702	2702	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000387347	+1	known	NULL	NULL	181	0%	69	91.3%	2621	83.2%	-	-	-	-
WWC3	55841	genome.wustl.edu	37	X	10085463	10085463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015691.3	+1	validated	p.R455H	1.000	31	0%	60	30%	5	0%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	NULL
TAF1	6872	genome.wustl.edu	37	X	70603920	70603920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004606.3	+1	reviewed	p.E706K	1.000	401	0%	141	39%	8	87.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GPR112	139378	genome.wustl.edu	37	X	135405545	135405545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11I-01	TCGA-B5-A11I-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153834.3	+1	reviewed	p.R227C	1.000	114	0%	16	43.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ConA_like_lec_gl
