Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
NOC2L	26155	genome.wustl.edu	37	1	892309	892309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015658.3	-1	validated	p.V151I	0.003	271	0%	435	26.2%	20	50%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
C1orf159	54991	genome.wustl.edu	37	1	1018289	1018289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017891.4	-1	validated	p.R194H	0.494	29	0%	38	36.8%	16	68.7%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
TMEM240	339453	genome.wustl.edu	37	1	1471136	1471136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114748.1	-1	validated	p.S69L	1.000	30	0%	77	15.6%	1	0%	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
SLC35E2	9906	genome.wustl.edu	37	1	1597457	1597457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001110781.1	-1	validated	p.V328I	1.000	42	0%	53	20.8%	9	22.2%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_TPT,superfamily_Multidrug resistance efflux transporter EmrE
WRAP73	49856	genome.wustl.edu	37	1	3547542	3547542	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017818.3	-1	reviewed	p.T460	0.000	39	0%	39	23.1%	30	53.3%	-	-	-	NULL
NPHP4	261734	genome.wustl.edu	37	1	5950973	5950973	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000466897	-1	known	p.R113W	0.244	55	0%	50	18%	6	50%	-	-	-	NULL
RNF207	388591	genome.wustl.edu	37	1	6272006	6272006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207396.2	+1	validated	p.V397I	0.993	27	0%	27	18.5%	5	20%	possibly_damaging(0.94)	tolerated(0.2)	neutral(0.434)	NULL
PLEKHG5	57449	genome.wustl.edu	37	1	6533313	6533313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198681.2	-1	reviewed	p.R342W	0.958	45	0%	76	23.7%	10	80%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PLEKHG5	57449	genome.wustl.edu	37	1	6556597	6556597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198681.2	-1	reviewed	p.R34C	0.995	78	0%	132	21.2%	4	50%	possibly_damaging(0.919)	deleterious(0.02)	deleterious(0.752)	NULL
KLHL21	9903	genome.wustl.edu	37	1	6653606	6653606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014851.2	-1	provisional	p.R538H	0.988	71	0%	94	31.9%	6	33.3%	probably_damaging(0.998)	tolerated(0.18)	deleterious(0.530)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
ERRFI1	54206	genome.wustl.edu	37	1	8075646	8075646	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018948.3	-1	validated	p.R12G	0.035	214	0%	146	18.5%	4	75%	probably_damaging(0.998)	tolerated(0.33)	deleterious(0.498)	HMMPfam_GTPase_binding
SLC45A1	50651	genome.wustl.edu	37	1	8390480	8390480	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080397.1	+1	provisional	p.P309	0.131	17	0%	40	30%	0	-	-	-	-	HMMPfam_MFS_1
RERE	473	genome.wustl.edu	37	1	8424243	8424243	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042681.1	-1	reviewed	p.K538I	1.000	135	0%	165	20%	19	26.3%	unknown(0)	deleterious(0)	-	HMMPfam_GATA,HMMSmart_SM00401,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
PIK3CD	5293	genome.wustl.edu	37	1	9770571	9770571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005026.3	+1	validated	p.V20I	0.967	176	0%	186	21%	3	0%	benign(0.012)	tolerated(0.51)	neutral(0.009)	NULL
PIK3CD	5293	genome.wustl.edu	37	1	9775990	9775990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005026.3	+1	validated	p.A152T	0.006	11	0%	16	37.5%	4	0%	benign(0.01)	tolerated(0.69)	neutral(0.003)	superfamily_SSF54236
PIK3CD	5293	genome.wustl.edu	37	1	9782591	9782591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005026.3	+1	validated	p.R785W	1.000	53	0%	87	19.5%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,superfamily_Kinase_like,PatternScan_PI3_4_KINASE_1
C1orf127	148345	genome.wustl.edu	37	1	11015064	11015064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000377008	-1	known	p.G153R	0.000	128	0%	165	23.6%	0	-	benign(0.012)	tolerated(0.72)	neutral(0.002)	NULL
PTCHD2	57540	genome.wustl.edu	37	1	11589626	11589626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020780.1	+1	validated	p.A938T	1.000	69	0%	98	27.6%	0	-	possibly_damaging(0.822)	deleterious(0)	deleterious(0.756)	HMMPfam_Patched
ZBTB17	7709	genome.wustl.edu	37	1	16269071	16269071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003443.2	-1	validated	p.T664M	1.000	87	0%	112	26.8%	43	41.8%	unknown(0)	deleterious(0)	-	NULL
CROCC	9696	genome.wustl.edu	37	1	17257068	17257068	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014675.3	+1	validated	p.A276	0.003	43	0%	67	16.4%	1	0%	-	-	-	NULL
PADI4	23569	genome.wustl.edu	37	1	17668843	17668843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012387.2	+1	reviewed	p.A294V	0.995	89	0%	41	34.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAD,superfamily_Pentein
IFFO2	126917	genome.wustl.edu	37	1	19236933	19236933	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136265.1	-1	validated	p.R451*	1.000	330	0%	290	26.6%	6	16.6%	-	-	-	HMMPfam_Filament
PQLC2	54896	genome.wustl.edu	37	1	19655093	19655093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040125.1	+1	validated	p.R278C	0.002	55	0%	59	18.6%	20	30%	possibly_damaging(0.56)	deleterious(0.05)	deleterious(0.536)	NULL
UBXN10	127733	genome.wustl.edu	37	1	20517177	20517177	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152376.3	+1	provisional	p.S41	0.966	80	0%	56	26.8%	14	35.7%	-	-	-	NULL
KIF17	57576	genome.wustl.edu	37	1	21024876	21024876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020816.2	-1	validated	p.R410Q	1.000	167	0%	189	20.1%	1	0%	possibly_damaging(0.525)	tolerated(0.13)	neutral(0.429)	NULL
NR0B2	8431	genome.wustl.edu	37	1	27240140	27240140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021969.2	-1	reviewed	p.L98F	0.992	28	0%	16	37.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
SLC9A1	6548	genome.wustl.edu	37	1	27440593	27440593	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003047.3	-1	validated	p.L179	1.000	126	0%	109	21.1%	21	23.8%	-	-	-	HMMPfam_Na_H_Exchanger
LOC440577	440577	genome.wustl.edu	37	1	27533589	27533589	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_496355.5	+1	model	p.L53	0.997	17	0%	53	22.6%	0	-	-	-	-	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain
AHDC1	27245	genome.wustl.edu	37	1	27874481	27874481	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029882.2	-1	validated	p.P1382	0.867	60	0%	70	27.1%	20	60%	-	-	-	NULL
PTPRU	10076	genome.wustl.edu	37	1	29585171	29585171	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005704.3	+1	reviewed	p.Y120	0.690	122	0%	170	18.8%	6	33.3%	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
BAI2	576	genome.wustl.edu	37	1	32206051	32206051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001703.2	-1	reviewed	p.R629H	1.000	38	0%	54	35.2%	3	33.3%	probably_damaging(0.973)	tolerated(0.18)	deleterious(0.471)	NULL
AK2	204	genome.wustl.edu	37	1	33480162	33480162	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001625.2	-1	reviewed	p.H153	0.141	158	0%	79	35.4%	158	46.8%	-	-	-	"HMMPfam_ADK,HMMPfam_ADK_lid,superfamily_Microbial and mitochondrial ADK insert ""zinc finger"" domain,superfamily_P-loop containing nucleoside triphosphate hydrolases"
CSMD2	114784	genome.wustl.edu	37	1	34181974	34181974	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052896.3	-1	validated	p.S1003	0.985	116	0%	86	26.7%	0	-	-	-	-	HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
KIAA0319L	79932	genome.wustl.edu	37	1	36020065	36020065	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024874.4	-1	reviewed	p.N10Y	0.130	67	0%	67	23.9%	13	7.6%	benign(0.001)	deleterious(0.02)	neutral(0.383)	NULL
EIF2C4	192670	genome.wustl.edu	37	1	36291027	36291027	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017629.2	+1	reviewed	p.H140	0.997	340	0%	168	23.8%	2	50%	-	-	-	superfamily_PAZ domain
CSF3R	1441	genome.wustl.edu	37	1	36932136	36932136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_156039.2	-1	reviewed	p.A805V	0.020	56	0%	77	32.5%	14	0%	benign(0.132)	tolerated(0.06)	neutral(0.334)	NULL
MFSD2A	84879	genome.wustl.edu	37	1	40431685	40431685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136493.1	+1	validated	p.T251M	1.000	101	0%	65	32.3%	10	20%	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	superfamily_MFS general substrate transporter
KCNQ4	9132	genome.wustl.edu	37	1	41296858	41296858	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000509682	+1	known	p.K331E	0.004	43	0%	56	19.6%	0	-	-	-	-	HMMPfam_KCNQ_channel
CCDC30	728621	genome.wustl.edu	37	1	43102988	43102988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080850.2	+1	validated	p.R526Q	0.998	76	0%	40	25%	3	66.6%	benign(0.035)	tolerated(0.12)	neutral(0.263)	NULL
C1orf210	149466	genome.wustl.edu	37	1	43748762	43748762	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182517.2	-1	validated	p.S12	0.000	52	0%	81	28.4%	15	46.6%	-	-	-	NULL
PTCH2	8643	genome.wustl.edu	37	1	45293645	45293645	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003738.4	-1	reviewed	p.R643Q	0.992	149	0%	179	25.7%	0	-	probably_damaging(1)	tolerated(0.25)	deleterious(0.537)	HMMPfam_Patched
HECTD3	79654	genome.wustl.edu	37	1	45469223	45469223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024602.5	-1	validated	p.R843C	1.000	126	0%	108	25%	42	47.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
LURAP1	541468	genome.wustl.edu	37	1	46685445	46685445	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013615.2	+1	validated	p.R91	0.844	102	0%	60	23.3%	6	16.6%	-	-	-	NULL
RAB3B	5865	genome.wustl.edu	37	1	52442593	52442593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002867.3	-1	validated	p.R66H	1.000	147	0%	84	29.8%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
GLIS1	148979	genome.wustl.edu	37	1	53974885	53974885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147193.2	-1	validated	p.A538V	0.009	69	0%	65	15.4%	1	0%	benign(0)	deleterious(0)	neutral(0.445)	NULL
FAM151A	338094	genome.wustl.edu	37	1	55080444	55080444	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176782.2	-1	validated	p.R168	1.000	333	0%	259	23.9%	0	-	-	-	-	HMMPfam_DUF2181
USP24	23358	genome.wustl.edu	37	1	55591133	55591133	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015306.2	-1	validated	p.R1114*	1.000	394	0%	235	22.6%	4	0%	-	-	-	NULL
PDE4B	5142	genome.wustl.edu	37	1	66829176	66829176	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037341.1	+1	reviewed	p.D402	0.194	187	0%	38	21.1%	8	0%	-	-	-	superfamily_HD-domain/PDEase-like
LRRC7	57554	genome.wustl.edu	37	1	70541780	70541780	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020794.2	+1	validated	p.T1379	0.213	80	0%	63	39.7%	0	-	-	-	-	NULL
COL24A1	255631	genome.wustl.edu	37	1	86453296	86453296	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152890.5	-1	validated	p.E785fs	0.999	-	-	-	-	-	-	-	-	-	HMMPfam_Collagen
LRRC8B	23507	genome.wustl.edu	37	1	90049657	90049657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134476.1	+1	validated	p.A483V	1.000	48	0%	17	29.4%	1	100%	benign(0.002)	tolerated(0.21)	neutral(0.044)	superfamily_SSF52058
HFM1	164045	genome.wustl.edu	37	1	91843673	91843673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017975.3	-1	validated	p.V435A	0.996	121	0%	28	39.3%	0	-	benign(0.122)	deleterious(0.02)	neutral(0.393)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
AHCYL1	10768	genome.wustl.edu	37	1	110561051	110561051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006621.4	+1	validated	p.V394I	1.000	152	0%	54	31.5%	68	48.5%	benign(0.059)	deleterious(0.04)	neutral(0.353)	HMMPfam_AdoHcyase,HMMPfam_AdoHcyase_NAD,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
HBXIP	10542	genome.wustl.edu	37	1	110946541	110946541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006402.2	-1	reviewed	p.G154E	1.000	145	0%	125	22.4%	216	33.7%	probably_damaging(1)	tolerated(0.21)	deleterious(0.544)	NULL
CHIA	27159	genome.wustl.edu	37	1	111854890	111854890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201653.2	+1	validated	p.N45S	0.962	145	0%	54	16.7%	0	-	benign(0)	deleterious(0.04)	neutral(0.349)	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
PTPN22	26191	genome.wustl.edu	37	1	114394680	114394680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015967.4	-1	reviewed	p.R266L	1.000	189	0.5%	58	27.6%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
AP4B1	10717	genome.wustl.edu	37	1	114438930	114438930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006594.2	-1	validated	p.R487Q	1.000	145	0%	84	23.8%	22	22.7%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_Adaptin_N,superfamily_ARM-type_fold
NBPF14	25832	genome.wustl.edu	37	1	148015651	148015651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015383.1	-1	predicted	p.R327H	0.003	297	0%	105	21.9%	0	-	benign(0.066)	tolerated(0.43)	neutral(0.018)	HMMPfam_DUF1220
FCGR1A	2209	genome.wustl.edu	37	1	149761756	149761756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000566.3	+1	reviewed	p.L236M	0.171	260	0%	253	21.7%	14	0%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PI4KB	5298	genome.wustl.edu	37	1	151271347	151271347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002651.1	-1	provisional	p.R663H	1.000	118	0%	67	28.4%	43	41.8%	possibly_damaging(0.938)	deleterious(0.01)	deleterious(0.789)	HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
S100A11	6282	genome.wustl.edu	37	1	152006245	152006245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005620.1	-1	reviewed	p.R12Q	0.989	158	0%	129	28.7%	1742	47.8%	benign(0.001)	tolerated(0.4)	neutral(0.016)	HMMPfam_S_100,superfamily_SSF47473
TCHH	7062	genome.wustl.edu	37	1	152083770	152083772	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007113.2	-1	provisional	p.E641in_frame_del	0.909:0.012:0.001	-	-	-	-	-	-	-	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152281622	152281622	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.Q1914*	0.000	691	0.1%	466	21.9%	0	-	-	-	-	HMMPfam_Filaggrin
LCE1D	353134	genome.wustl.edu	37	1	152770577	152770577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178352.2	+1	validated	p.G103S	0.984	10	0%	24	62.5%	0	-	unknown(0)	-	-	NULL
DENND4B	9909	genome.wustl.edu	37	1	153902844	153902844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014856.2	-1	validated	p.R1474W	1.000	153	0%	198	21.7%	14	21.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CRTC2	200186	genome.wustl.edu	37	1	153924524	153924524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181715.1	-1	provisional	p.M323V	1.000	89	0%	147	28.6%	23	39.1%	benign(0.001)	tolerated(0.39)	neutral(0.016)	NULL
SHE	126669	genome.wustl.edu	37	1	154461761	154461761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010846.2	-1	validated	p.A264T	0.991	91	0%	108	31.5%	0	-	benign(0.055)	deleterious(0.03)	neutral(0.368)	NULL
TRIM46	80128	genome.wustl.edu	37	1	155156430	155156430	+	Missense_Mutation	SNP	G	G	A	rs139008733	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025058.3	+1	validated	p.G682S	0.002	189	0%	253	35.6%	4	25%	benign(0.328)	tolerated(0.48)	neutral(0.113)	NULL
GBA	2629	genome.wustl.edu	37	1	155209863	155209863	+	Missense_Mutation	SNP	G	G	A	rs190207858	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000157.3	-1	reviewed	p.R41C	0.047	57	0%	56	19.6%	36	58.3%	possibly_damaging(0.675)	deleterious(0.04)	deleterious(0.589)	HMMPfam_Glyco_hydro_30,superfamily_Glycosyl hydrolase domain
LMNA	4000	genome.wustl.edu	37	1	156108510	156108510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170707.2	+1	reviewed	p.R644C	1.000	24	0%	26	15.4%	67	19.4%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
RHBG	57127	genome.wustl.edu	37	1	156339063	156339063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020407.3	+1	reviewed	p.A8V	0.014	47	0%	68	16.2%	0	-	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
MEF2D	4209	genome.wustl.edu	37	1	156449104	156449104	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005920.2	-1	provisional	p.N214	0.980	107	0%	91	27.5%	9	33.3%	-	-	-	NULL
FCRL1	115350	genome.wustl.edu	37	1	157766913	157766913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052938.4	-1	reviewed	p.L399P	0.000	154	0%	100	14%	0	-	possibly_damaging(0.833)	tolerated(0.23)	neutral(0.359)	NULL
CD1A	909	genome.wustl.edu	37	1	158225118	158225118	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001763.2	+1	reviewed	p.Y101	0.000	189	0%	86	20.9%	1	0%	-	-	-	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
ATP1A4	480	genome.wustl.edu	37	1	160144369	160144369	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144699.3	+1	reviewed	p.G715*	1.000	271	0%	143	21.7%	0	-	-	-	-	HMMPfam_Hydrolase,superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
NCSTN	23385	genome.wustl.edu	37	1	160324029	160324029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015331.2	+1	reviewed	p.R434Q	0.983	392	0%	221	26.2%	65	41.5%	benign(0.41)	tolerated(0.18)	neutral(0.189)	HMMPfam_Nicastrin,superfamily_Zn-dependent exopeptidases
NCSTN	23385	genome.wustl.edu	37	1	160328005	160328005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015331.2	+1	reviewed	p.A692T	1.000	277	0%	143	16.8%	153	18.9%	benign(0.021)	tolerated(0.53)	neutral(0.009)	NULL
B4GALT3	8703	genome.wustl.edu	37	1	161144908	161144908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003779.2	-1	reviewed	p.R122C	1.000	71	0%	89	27%	28	46.4%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
OLFML2B	25903	genome.wustl.edu	37	1	161993094	161993094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015441.1	-1	provisional	p.E43K	0.834	169	0%	167	26.3%	4	0%	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
ALDH9A1	223	genome.wustl.edu	37	1	165636557	165636557	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000696.3	-1	reviewed	p.G446	0.281	178	0%	58	25.9%	61	36%	-	-	-	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH
RCSD1	92241	genome.wustl.edu	37	1	167663515	167663515	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052862.3	+1	validated	p.G150	0.584	153	0%	74	35.1%	6	0%	-	-	-	NULL
ATP1B1	481	genome.wustl.edu	37	1	169076069	169076069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001677.3	+1	reviewed	p.M1T	1.000	47	0%	60	28.3%	22	22.7%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Na_K-ATPase
C1orf105	92346	genome.wustl.edu	37	1	172414292	172414292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139240.3	+1	validated	p.P34H	0.689	198	0%	160	15.6%	0	-	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	NULL
RALGPS2	55103	genome.wustl.edu	37	1	178854313	178854313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152663.3	+1	validated	p.H336R	1.000	95	0%	32	12.5%	4	0%	benign(0.143)	tolerated(0.37)	neutral(0.032)	NULL
FAM20B	9917	genome.wustl.edu	37	1	179041204	179041204	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014864.3	+1	validated	p.T385	0.955	176	0%	97	26.8%	7	42.8%	-	-	-	HMMPfam_DUF1193
KIAA1614	57710	genome.wustl.edu	37	1	180885793	180885793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020950.1	+1	validated	p.P185L	0.048	37	0%	62	21%	0	-	possibly_damaging(0.873)	tolerated(0.85)	neutral(0.340)	NULL
NMNAT2	23057	genome.wustl.edu	37	1	183262858	183262858	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015039.2	-1	reviewed	p.H52	1.000	157	0%	106	27.4%	0	-	-	-	-	HMMPfam_CTP_transf_2,superfamily_Nucleotidylyl transferase
HMCN1	83872	genome.wustl.edu	37	1	186057112	186057112	+	Missense_Mutation	SNP	C	C	T	rs187753126	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031935.2	+1	reviewed	p.R3138W	1.000	243	0%	91	27.5%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
TPR	7175	genome.wustl.edu	37	1	186326599	186326599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003292.2	-1	reviewed	p.R552C	1.000	291	0%	142	28.2%	4	0%	possibly_damaging(0.853)	deleterious(0)	deleterious(0.773)	NULL
ZBTB41	360023	genome.wustl.edu	37	1	197157461	197157461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194314.2	-1	validated	p.R503W	0.998	112	0%	43	16.3%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZBTB41	360023	genome.wustl.edu	37	1	197169288	197169288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194314.2	-1	validated	p.V106I	0.920	105	0%	129	23.3%	0	-	benign(0.415)	deleterious(0)	deleterious(0.579)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
LHX9	56956	genome.wustl.edu	37	1	197890459	197890459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020204.2	+1	reviewed	p.R135C	1.000	94	0%	93	16.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
CACNA1S	779	genome.wustl.edu	37	1	201054601	201054601	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000069.2	-1	reviewed	p.T371	0.014	289	0%	188	24.5%	0	-	-	-	-	superfamily_SSF81324
PKP1	5317	genome.wustl.edu	37	1	201294880	201294880	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000299.2	+1	reviewed	e13-2	0.413	74	0%	66	12.1%	0	-	-	-	-	-
PPP1R12B	4660	genome.wustl.edu	37	1	202544200	202544200	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032105.2	+1	reviewed	p.A978D	1.000	108	0%	52	28.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LEMD1	93273	genome.wustl.edu	37	1	205350915	205350915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001552.3	-1	validated	p.R92Q	0.000	524	0%	244	30.7%	2	100%	possibly_damaging(0.526)	tolerated(0.49)	neutral(0.188)	NULL
C1orf186	440712	genome.wustl.edu	37	1	206241647	206241647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000331555	-1	known	p.A48T	0.000	149	0%	62	33.9%	72	26.3%	benign(0)	deleterious(0)	neutral(0.445)	NULL
IL10	3586	genome.wustl.edu	37	1	206943174	206943174	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000572.2	-1	reviewed	p.K148	1.000	194	0%	76	18.4%	0	-	-	-	-	superfamily_4-helical cytokines,HMMPfam_IL10,HMMSmart_SM00188
LAMB3	3914	genome.wustl.edu	37	1	209791824	209791824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000228.2	-1	reviewed	p.R961Q	1.000	122	0%	86	29.1%	216	44.4%	benign(0.036)	deleterious(0)	neutral(0.447)	NULL
DIEXF	27042	genome.wustl.edu	37	1	210016949	210016949	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014388.5	+1	validated	p.T645	0.000	115	0%	39	38.5%	4	0%	-	-	-	HMMPfam_DUF1253
PTPN14	5784	genome.wustl.edu	37	1	214542938	214542938	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005401.4	-1	reviewed	p.R1045*	1.000	279	0%	130	26.2%	3	0%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
HHIPL2	79802	genome.wustl.edu	37	1	222695958	222695958	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024746.3	-1	validated	p.G720	0.004	147	0%	79	27.8%	2	0%	-	-	-	NULL
HHIPL2	79802	genome.wustl.edu	37	1	222715455	222715455	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024746.3	-1	validated	p.G339	0.506	164	0%	89	23.6%	0	-	-	-	-	superfamily_Quino_gluc_DH
TLR5	7100	genome.wustl.edu	37	1	223285784	223285784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003268.5	-1	reviewed	p.T197M	0.000	117	0%	139	25.9%	1	100%	benign(0.005)	tolerated(0.25)	neutral(0.037)	superfamily_SSF52058
MIXL1	83881	genome.wustl.edu	37	1	226413370	226413370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031944.1	+1	provisional	p.E186K	0.000	127	0%	204	26%	0	-	benign(0.002)	tolerated(0.25)	neutral(0.037)	NULL
ITPKB	3707	genome.wustl.edu	37	1	226924876	226924884	+	In_Frame_Del	DEL	CTGCCGCTG	CTGCCGCTG	-	rs147889095	byCluster;by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	CTGCCGCTG	CTGCCGCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002221.3	-1	reviewed	p.GSS94in_frame_del	0.902:0.650:0.630:0.440:0.081:0.083:0.088:0.089:0.091	-	-	-	-	-	-	-	-	-	NULL
WNT3A	89780	genome.wustl.edu	37	1	228210497	228210497	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033131.2	+1	reviewed	p.A67	0.030	66	0%	85	21.2%	0	-	-	-	-	HMMPfam_wnt,HMMSmart_WNT1
C1orf35	79169	genome.wustl.edu	37	1	228289093	228289093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024319.2	-1	provisional	p.D205E	0.180	240	0.4%	380	15.8%	17	35.2%	benign(0.376)	tolerated(0.8)	neutral(0.120)	NULL
TRIM17	51127	genome.wustl.edu	37	1	228602524	228602524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024940.2	-1	reviewed	p.A84T	1.000	54	0%	73	27.4%	16	37.5%	possibly_damaging(0.612)	tolerated(0.66)	neutral(0.214)	superfamily_SSF57850
AGT	183	genome.wustl.edu	37	1	230846279	230846279	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000029.3	-1	reviewed	p.V106	0.058	211	2.4%	192	28.1%	1	0%	-	-	-	HMMPfam_Serpin,superfamily_Serpins
NID1	4811	genome.wustl.edu	37	1	236175268	236175268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002508.2	-1	reviewed	p.Q827R	1.000	172	0%	81	18.5%	6	0%	benign(0.002)	tolerated(0.79)	neutral(0.001)	PatternScan_ASX_HYDROXYL,superfamily_Thyroglobulin type-1 domain,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA
ZNF692	55657	genome.wustl.edu	37	1	249151595	249151595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136036.1	-1	provisional	p.G110S	0.090	118	0%	190	23.2%	6	33.3%	benign(0.007)	tolerated(0.14)	neutral(0.249)	NULL
FAM150B	285016	genome.wustl.edu	37	2	286179	286179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002919.2	-1	validated	p.C111Y	1.000	382	0%	542	18.6%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MYT1L	23040	genome.wustl.edu	37	2	1812925	1812925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015025.2	-1	validated	p.P1030L	1.000	151	0%	150	28%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_zf-C2HC,superfamily_SSF103637
COLEC11	78989	genome.wustl.edu	37	2	3691339	3691339	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024027.3	+1	validated	p.T149	0.889	56	0%	86	29.1%	7	42.8%	-	-	-	HMMSmart_SM00034,superfamily_C-type lectin-like
LPIN1	23175	genome.wustl.edu	37	2	11944578	11944578	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145693.1	+1	reviewed	p.N645	0.840	145	0%	82	23.2%	2	0%	-	-	-	NULL
OTOF	9381	genome.wustl.edu	37	2	26698903	26698903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194248.2	-1	reviewed	p.K957R	1.000	77	0%	114	22.8%	0	-	probably_damaging(0.965)	tolerated(0.77)	neutral(0.408)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
KCNK3	3777	genome.wustl.edu	37	2	26950775	26950775	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002246.2	+1	reviewed	p.A175G	1.000	80	0%	138	32.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
EMILIN1	11117	genome.wustl.edu	37	2	27306765	27306765	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007046.3	+1	reviewed	p.L776	0.981	32	0%	48	29.2%	8	0%	-	-	-	NULL
CAD	790	genome.wustl.edu	37	2	27465263	27465263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004341.3	+1	reviewed	p.R2064C	1.000	61	0%	81	24.7%	22	40.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Asp/Orn_carbamoyltranf,HMMPfam_OTCace_N
SUPT7L	9913	genome.wustl.edu	37	2	27878346	27878346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014860.1	-1	provisional	p.E290K	1.000	224	0%	110	20.9%	24	33.3%	benign(0.03)	deleterious(0.05)	neutral(0.347)	NULL
CLIP4	79745	genome.wustl.edu	37	2	29366644	29366644	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024692.4	+1	validated	p.A240T	1.000	137	0%	27	37%	3	33.3%	benign(0.072)	tolerated(0.24)	neutral(0.042)	superfamily_Ankyrin repeat
CRIM1	51232	genome.wustl.edu	37	2	36764577	36764577	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016441.1	+1	provisional	p.C837	1.000	120	0%	55	20%	15	13.3%	-	-	-	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1
THADA	63892	genome.wustl.edu	37	2	43655303	43655303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083953.1	-1	validated	p.A1332T	1.000	195	0%	76	27.6%	17	29.4%	benign(0.004)	tolerated(0.09)	neutral(0.296)	NULL
SPTBN1	6711	genome.wustl.edu	37	2	54873541	54873541	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003128.2	+1	reviewed	p.F1599V	1.000	49	0%	24	37.5%	34	35.2%	possibly_damaging(0.508)	tolerated(0.1)	neutral(0.457)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
EML6	400954	genome.wustl.edu	37	2	55096450	55096450	+	Silent	SNP	C	C	T	rs183857870	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039753.2	+1	validated	p.D728	0.991	216	0%	55	36.4%	0	-	-	-	-	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
CCDC88A	55704	genome.wustl.edu	37	2	55549716	55549716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135597.1	-1	validated	p.T1036M	1.000	135	0%	56	19.6%	0	-	probably_damaging(0.958)	tolerated(0.11)	deleterious(0.673)	NULL
MDH1	4190	genome.wustl.edu	37	2	63822607	63822607	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005917.2	+1	reviewed	p.D51	0.008	278	0%	130	24.6%	101	40.5%	-	-	-	HMMPfam_Ldh_1_N,superfamily_NAD(P)-binding Rossmann-fold domains
SPRED2	200734	genome.wustl.edu	37	2	65540994	65540994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181784.2	-1	validated	p.R300W	1.000	19	0%	33	21.2%	7	42.8%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
AAK1	22848	genome.wustl.edu	37	2	69741756	69741756	+	Silent	SNP	T	T	C	rs55712143		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014911.3	-1	reviewed	p.Q541	0.988	150	16.7%	73	20.5%	0	-	-	-	-	NULL
EXOC6B	23233	genome.wustl.edu	37	2	72406493	72406493	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015189.1	-1	validated	p.R803*	1.000	418	0%	123	16.3%	4	0%	-	-	-	HMMPfam_Sec15
DCTN1	1639	genome.wustl.edu	37	2	74588705	74588705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004082.3	-1	reviewed	p.A1253V	0.914	224	0%	118	15.3%	155	20.6%	benign(0.077)	tolerated(0.09)	neutral(0.302)	NULL
DCTN1	1639	genome.wustl.edu	37	2	74590133	74590133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004082.3	-1	reviewed	p.R1173C	0.229	355	0.6%	236	22%	126	48.4%	possibly_damaging(0.946)	deleterious(0.04)	deleterious(0.739)	NULL
HK2	3099	genome.wustl.edu	37	2	75117942	75117942	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000189.4	+1	reviewed	p.H876	0.997	268	0%	158	19.6%	11	45.4%	-	-	-	HMMPfam_Hexokinase_2,superfamily_SSF53067
MRPL19	9801	genome.wustl.edu	37	2	75881867	75881867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014763.3	+1	reviewed	p.E161K	1.000	151	0.7%	82	19.5%	32	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LRRTM4	80059	genome.wustl.edu	37	2	77745596	77745596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134745.1	-1	validated	p.R467W	1.000	135	0%	44	29.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
REG3A	5068	genome.wustl.edu	37	2	79385536	79385536	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002580.1	-1	reviewed	p.A83	0.066	355	0%	148	21.6%	0	-	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
SH2D6	284948	genome.wustl.edu	37	2	85663600	85663600	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198482.1	+1	provisional	p.S141	0.289	98	0%	90	25.6%	0	-	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
EIF2AK3	9451	genome.wustl.edu	37	2	88888279	88888279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004836.5	-1	reviewed	p.H436Y	1.000	181	0.6%	53	26.4%	2	50%	probably_damaging(0.994)	tolerated(0.1)	deleterious(0.738)	NULL
CNGA3	1261	genome.wustl.edu	37	2	99013409	99013409	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001298.2	+1	reviewed	p.P592	0.000	75	0%	43	27.9%	0	-	-	-	-	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
UNC50	25972	genome.wustl.edu	37	2	99227329	99227329	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014044.5	+1	validated	p.G124	0.425	648	0%	619	27.3%	43	44.1%	-	-	-	HMMPfam_UNC-50
C2orf55	343990	genome.wustl.edu	37	2	99438545	99438545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207362.2	-1	validated	p.G731R	0.013	43	0%	52	32.7%	13	61.5%	unknown(0)	deleterious(0.02)	-	NULL
IL1RL2	8808	genome.wustl.edu	37	2	102818167	102818167	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003854.2	+1	reviewed	p.V214E	0.038	179	0%	84	13.1%	0	-	probably_damaging(0.988)	deleterious(0.01)	deleterious(0.843)	HMMSmart_IG,superfamily_SSF48726
POU3F3	5455	genome.wustl.edu	37	2	105473129	105473129	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006236.1	+1	provisional	p.A387	1.000	77	0%	144	16.7%	0	-	-	-	-	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA
SULT1C2	6819	genome.wustl.edu	37	2	108910712	108910712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176825.2	+1	reviewed	p.D60G	1.000	212	0%	81	30.9%	13	46.1%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
BCL2L11	10018	genome.wustl.edu	37	2	111907692	111907692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138621.3	+1	reviewed	p.G156R	0.993	218	0%	99	22.2%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Bclx_interact
MARCO	8685	genome.wustl.edu	37	2	119750796	119750796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006770.3	+1	reviewed	p.E450G	0.000	245	0%	90	32.2%	7	14.2%	benign(0.005)	-	-	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
PCDP1	200373	genome.wustl.edu	37	2	120369301	120369301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029996.3	+1	validated	p.V146I	0.000	147	0%	64	26.6%	3	33.3%	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
BIN1	274	genome.wustl.edu	37	2	127816725	127816725	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139343.1	-1	reviewed	p.N288	0.972	123	0%	179	11.7%	95	6.3%	-	-	-	NULL
POTEF	728378	genome.wustl.edu	37	2	130877793	130877793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099771.2	-1	validated	p.G99D	0.186	374	0%	494	14.2%	0	-	possibly_damaging(0.872)	deleterious(0)	deleterious(0.784)	NULL
TMEM163	81615	genome.wustl.edu	37	2	135308175	135308175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030923.4	-1	validated	p.A142T	0.998	205	0%	71	31%	0	-	probably_damaging(0.996)	tolerated(0.28)	deleterious(0.493)	NULL
RAB3GAP1	22930	genome.wustl.edu	37	2	135881801	135881801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012233.2	+1	reviewed	p.C272Y	1.000	335	0%	235	13.2%	20	0%	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	NULL
LCT	3938	genome.wustl.edu	37	2	136567447	136567447	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002299.2	-1	reviewed	p.D824N	1.000	188	0%	168	27.4%	0	-	benign(0.007)	tolerated(0.09)	neutral(0.296)	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
LRP1B	53353	genome.wustl.edu	37	2	141291607	141291607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.D2582G	1.000	199	0%	57	21.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,superfamily_SSF63825
ZEB2	9839	genome.wustl.edu	37	2	145161518	145161518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014795.3	-1	reviewed	p.R258W	1.000	477	0%	179	24.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CACNB4	785	genome.wustl.edu	37	2	152698528	152698528	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000726.3	-1	reviewed	p.A397	0.021	217	0%	77	24.7%	0	-	-	-	-	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
PKP4	8502	genome.wustl.edu	37	2	159481904	159481904	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003628.3	+1	reviewed	p.E373A	1.000	101	0%	32	28.1%	19	52.6%	probably_damaging(0.965)	tolerated(0.57)	neutral(0.413)	NULL
FIGN	55137	genome.wustl.edu	37	2	164467699	164467699	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018086.2	-1	validated	p.H215Y	1.000	305	0%	104	15.4%	0	-	possibly_damaging(0.602)	deleterious(0.01)	deleterious(0.614)	NULL
GRB14	2888	genome.wustl.edu	37	2	165353908	165353908	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004490.2	-1	reviewed	p.A399	0.229	102	0%	45	24.4%	11	27.2%	-	-	-	HMMPfam_BPS
SCN2A	6326	genome.wustl.edu	37	2	166245201	166245201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040142.1	+1	reviewed	p.R1629C	1.000	313	0%	98	25.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN2A	6326	genome.wustl.edu	37	2	166245867	166245867	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040142.1	+1	reviewed	p.R1851W	1.000	224	0.9%	62	24.2%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FASTKD1	79675	genome.wustl.edu	37	2	170413751	170413751	+	Missense_Mutation	SNP	G	G	A	rs141705162	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024622.3	-1	validated	p.A343V	0.945	168	0%	136	22.8%	7	28.5%	benign(0.243)	tolerated(0.68)	neutral(0.027)	NULL
NFE2L2	4780	genome.wustl.edu	37	2	178095985	178095985	+	Missense_Mutation	SNP	C	C	T	rs181294188	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006164.3	-1	validated	p.R449H	1.000	234	0%	125	20.8%	81	29.6%	probably_damaging(0.999)	tolerated(0.26)	deleterious(0.524)	NULL
TTN	7273	genome.wustl.edu	37	2	179446301	179446301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.V19662M	0.998	246	0%	59	23.7%	0	-	probably_damaging(0.964)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179457213	179457213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.S17270N	1.000	353	0%	96	25%	0	-	benign(0.29)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179569984	179569984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.M8597V	0.999	150	0%	113	21.2%	0	-	unknown(0)	-	-	NULL
COL5A2	1290	genome.wustl.edu	37	2	189923153	189923153	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000393.3	-1	reviewed	e33+2	1.000	250	0%	74	36.5%	0	-	-	-	-	-
MYO1B	4430	genome.wustl.edu	37	2	192255112	192255112	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130158.1	+1	validated	p.R626*	1.000	154	0%	114	23.7%	20	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
HECW2	57520	genome.wustl.edu	37	2	197122583	197122583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020760.1	-1	provisional	p.R1128H	1.000	117	0%	36	27.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
HECW2	57520	genome.wustl.edu	37	2	197183615	197183615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020760.1	-1	provisional	p.R667W	0.307	101	0%	53	20.8%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
CASP10	843	genome.wustl.edu	37	2	202050825	202050825	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032977.3	+1	reviewed	p.R109*	0.000	69	1.4%	29	31%	2	0%	-	-	-	superfamily_DEATH_like
MPP4	58538	genome.wustl.edu	37	2	202557653	202557653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033066.2	-1	reviewed	p.P60L	0.990	159	0%	44	18.2%	0	-	probably_damaging(0.971)	deleterious(0.01)	deleterious(0.819)	HMMSmart_SM00569
CD28	940	genome.wustl.edu	37	2	204591705	204591705	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006139.2	+1	validated	p.H134	0.248	93	0%	35	37.1%	0	-	-	-	-	superfamily_Immunoglobulin
NDUFS1	4719	genome.wustl.edu	37	2	207007417	207007417	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005006.5	-1	reviewed	p.G376*	1.000	93	0%	61	32.8%	10	10%	-	-	-	HMMPfam_Molybdopterin,superfamily_SSF53706
UNC80	285175	genome.wustl.edu	37	2	210835673	210835673	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032504.1	+1	validated	p.Q2684*	1.000	569	0%	153	18.3%	0	-	-	-	-	NULL
FN1	2335	genome.wustl.edu	37	2	216232746	216232746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357009	-1	known	p.T2029M	0.003	135	0%	59	22%	174	7.4%	benign(0.007)	-	-	NULL
SLC11A1	6556	genome.wustl.edu	37	2	219252582	219252582	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000578.3	+1	reviewed	p.C233	0.397	51	0%	50	26%	6	0%	-	-	-	HMMPfam_Nramp
CTDSP1	58190	genome.wustl.edu	37	2	219268081	219268081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021198.1	+1	provisional	p.R200W	0.042	143	0%	208	27.4%	66	37.8%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_NIF,HMMSmart_CPDc,superfamily_SSF56784
VIL1	7429	genome.wustl.edu	37	2	219296874	219296874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007127.2	+1	reviewed	p.E437K	0.036	169	0%	115	20.9%	0	-	benign(0.002)	tolerated(0.05)	neutral(0.345)	HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF55753,superfamily_SSF82754
VIL1	7429	genome.wustl.edu	37	2	219297669	219297669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007127.2	+1	reviewed	p.Y499H	1.000	147	0%	98	14.3%	1	0%	probably_damaging(0.978)	tolerated(0.28)	neutral(0.452)	superfamily_SSF55753
ZNF142	7701	genome.wustl.edu	37	2	219509197	219509197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105537.1	-1	validated	p.G681V	0.056	46	0%	45	31.1%	4	75%	possibly_damaging(0.81)	deleterious(0.02)	deleterious(0.688)	NULL
CYP27A1	1593	genome.wustl.edu	37	2	219679181	219679181	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000784.3	+1	reviewed	p.N421	0.038	132	0%	119	24.4%	37	29.7%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
CNPPD1	27013	genome.wustl.edu	37	2	220037334	220037334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015680.4	-1	validated	p.L403I	1.000	205	0%	234	19.2%	58	27.5%	probably_damaging(0.971)	tolerated(0.41)	neutral(0.428)	NULL
ABCB6	10058	genome.wustl.edu	37	2	220074742	220074742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005689.1	-1	reviewed	p.G816E	1.000	293	0%	388	26%	41	46.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATG9A	79065	genome.wustl.edu	37	2	220089083	220089083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077198.1	-1	validated	p.R337H	1.000	52	0%	74	28.4%	31	9.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_APG9
TUBA4A	7277	genome.wustl.edu	37	2	220115760	220115760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006000.1	-1	reviewed	p.R221C	1.000	434	0%	635	22.8%	34	29.4%	possibly_damaging(0.834)	deleterious(0)	deleterious(0.762)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
DES	1674	genome.wustl.edu	37	2	220285589	220285589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001927.3	+1	reviewed	p.A313T	0.994	149	0%	168	33.3%	5	0%	benign(0.103)	deleterious(0)	neutral(0.453)	superfamily_Prefoldin,HMMPfam_Filament
OBSL1	23363	genome.wustl.edu	37	2	220432976	220432976	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015311.2	-1	reviewed	p.E361	1.000	61	1.6%	68	26.5%	38	47.3%	-	-	-	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
DGKD	8527	genome.wustl.edu	37	2	234350564	234350564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152879.2	+1	reviewed	p.R373W	1.000	555	0%	569	16%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DAGK_cat,HMMSmart_SM00046
TRPM8	79054	genome.wustl.edu	37	2	234835299	234835299	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024080.4	+1	validated	p.S39	0.372	225	0%	78	21.8%	0	-	-	-	-	NULL
SH3BP4	23677	genome.wustl.edu	37	2	235943659	235943659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014521.2	+1	reviewed	p.R5W	1.000	86	0%	86	26.7%	18	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CNTN4	152330	genome.wustl.edu	37	3	3072567	3072567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175607.1	+1	reviewed	p.R564Q	1.000	254	0%	67	28.4%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
TRNT1	51095	genome.wustl.edu	37	3	3179046	3179046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182916.2	+1	validated	p.A84V	1.000	179	0%	132	17.4%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PolyA_pol,superfamily_Nucleotidyltransferase
BRPF1	7862	genome.wustl.edu	37	3	9781555	9781555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003694.1	+1	reviewed	p.R491Q	1.000	130	0.8%	170	14.7%	9	33.3%	possibly_damaging(0.827)	deleterious(0.02)	deleterious(0.697)	NULL
RPUSD3	285367	genome.wustl.edu	37	3	9879867	9879867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173659.3	-1	validated	p.R297C	0.095	99	0%	99	24.2%	37	32.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Pseudouridine synthase
BRK1	55845	genome.wustl.edu	37	3	10167367	10167367	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018462.4	+1	validated	p.R59Q	1.000	226	0%	169	25.4%	247	31.9%	benign(0.155)	deleterious(0)	neutral(0.458)	NULL
TATDN2	9797	genome.wustl.edu	37	3	10291111	10291111	+	Missense_Mutation	SNP	G	G	A	rs193243038	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014760.3	+1	validated	p.R76H	0.024	27	0%	41	31.7%	9	11.1%	probably_damaging(0.994)	tolerated(0.23)	deleterious(0.493)	NULL
TAMM41	132001	genome.wustl.edu	37	3	11850997	11850997	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138807.2	-1	provisional	p.R290*	0.768	240	0.4%	132	23.5%	8	25%	-	-	-	HMMPfam_Mmp37
TAMM41	132001	genome.wustl.edu	37	3	11871317	11871317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138807.2	-1	provisional	p.E145K	1.000	129	0%	79	20.3%	8	50%	probably_damaging(0.956)	tolerated(0.21)	neutral(0.444)	HMMPfam_Mmp37
GRIP2	80852	genome.wustl.edu	37	3	14564550	14564550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080423.1	-1	provisional	p.P272S	1.000	63	0%	48	12.5%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
FGD5	152273	genome.wustl.edu	37	3	14863095	14863095	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457774	+1	known	p.R53C	0.011	49	0%	73	23.3%	15	20%	-	-	-	NULL
BTD	686	genome.wustl.edu	37	3	15686516	15686516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000060.2	+1	reviewed	p.K385E	0.002	119	0%	49	22.4%	2	100%	benign(0.001)	tolerated(0.9)	-	NULL
SLC4A7	9497	genome.wustl.edu	37	3	27477999	27477999	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003615.3	-1	validated	p.R148*	1.000	122	0%	39	25.6%	0	-	-	-	-	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
ZNF860	344787	genome.wustl.edu	37	3	32032364	32032364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137674.1	+1	provisional	p.D598G	0.614	144	0%	162	17.3%	2	50%	benign(0.205)	deleterious(0.01)	neutral(0.426)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
DYNC1LI1	51143	genome.wustl.edu	37	3	32586494	32586494	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016141.2	-1	validated	p.L148	1.000	193	0%	99	26.3%	19	21%	-	-	-	HMMPfam_DLIC,superfamily_P-loop containing nucleoside triphosphate hydrolases
CLASP2	23122	genome.wustl.edu	37	3	33648915	33648915	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015097.1	-1	validated	p.I496N	1.000	129	0%	69	14.5%	1	100%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	superfamily_ARM repeat
PDCD6IP	10015	genome.wustl.edu	37	3	33840424	33840424	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013374.4	+1	validated	p.L68	0.752	17	0%	19	31.6%	13	46.1%	-	-	-	HMMPfam_BRO1
ITGA9	3680	genome.wustl.edu	37	3	37514890	37514890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002207.2	+1	reviewed	p.R120H	0.998	94	0%	49	22.4%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF69318
TTC21A	199223	genome.wustl.edu	37	3	39170717	39170717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105513.2	+1	validated	p.S692F	1.000	140	0%	73	28.8%	0	-	benign(0.031)	deleterious(0)	neutral(0.446)	superfamily_TPR-like
RPL14	9045	genome.wustl.edu	37	3	40503520	40503521	+	In_Frame_Ins	INS	-	-	CTGCTGCTG	rs61749576	byFrequency	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034996.1	+1	reviewed	p.153in_frame_insAAA	0.019:0.022	-	-	-	-	-	-	-	-	-	NULL
CDCP1	64866	genome.wustl.edu	37	3	45127511	45127511	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022842.3	-1	reviewed	p.N710	0.121	165	0%	75	30.7%	16	31.2%	-	-	-	NULL
PTH1R	5745	genome.wustl.edu	37	3	46943235	46943235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000313063	+1	known	p.A630T	0.039	95	0%	127	29.9%	0	-	benign(0.047)	tolerated(0.19)	neutral(0.053)	HMMPfam_7tm_2
SHISA5	51246	genome.wustl.edu	37	3	48511234	48511234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016479.3	-1	validated	p.A108V	0.052	113	0%	118	28.8%	268	40.6%	possibly_damaging(0.942)	deleterious(0.03)	deleterious(0.752)	NULL
COL7A1	1294	genome.wustl.edu	37	3	48615778	48615778	+	Silent	SNP	G	G	A	rs2854404		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000094.3	-1	reviewed	p.G1836	1.000	311	0%	284	23.9%	1	0%	-	-	-	HMMPfam_Collagen
CELSR3	1951	genome.wustl.edu	37	3	48677851	48677851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001407.2	-1	reviewed	p.T3056M	0.987	31	0%	26	19.2%	0	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	NULL
CACNA2D2	9254	genome.wustl.edu	37	3	50417156	50417156	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005505.1	-1	reviewed	p.S331	1.000	154	0.6%	143	27.3%	1	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
CACNA2D2	9254	genome.wustl.edu	37	3	50513566	50513566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005505.1	-1	reviewed	p.V91I	0.968	98	0%	88	13.6%	0	-	benign(0.19)	tolerated(0.49)	neutral(0.028)	NULL
ENSG00000173366	0	genome.wustl.edu	37	3	52258302	52258302	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000494383	-1	known	p.A164T	0.168	82	0%	91	25.3%	0	-	-	-	-	HMMSmart_SM00102,superfamily_L domain-like
DNAH1	25981	genome.wustl.edu	37	3	52394358	52394358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.R1535C	1.000	293	0%	339	21.2%	1	0%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DNAH1	25981	genome.wustl.edu	37	3	52418872	52418872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.R2798H	1.000	149	0%	195	14.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
BAP1	8314	genome.wustl.edu	37	3	52437677	52437677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004656.2	-1	reviewed	p.T495M	1.000	92	0%	114	22.8%	20	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SEMA3G	56920	genome.wustl.edu	37	3	52476906	52476906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020163.1	-1	provisional	p.R45C	1.000	177	0%	207	33.3%	1	100%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_Sema
STAB1	23166	genome.wustl.edu	37	3	52547929	52547929	+	Missense_Mutation	SNP	G	G	A	rs2286786	byCluster;by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015136.2	+1	reviewed	p.G1127S	0.000	174	0%	219	25.1%	7	0%	benign(0)	tolerated(0.98)	-	NULL
CACNA1D	776	genome.wustl.edu	37	3	53757544	53757544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000720.2	+1	validated	p.V604I	1.000	566	0%	385	26%	0	-	probably_damaging(0.99)	tolerated(0.18)	deleterious(0.497)	HMMPfam_Ion_trans,superfamily_SSF81324
CACNA2D3	55799	genome.wustl.edu	37	3	54930881	54930881	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018398.2	+1	reviewed	p.S784	0.002	241	0%	91	26.4%	1	0%	-	-	-	NULL
CACNA2D3	55799	genome.wustl.edu	37	3	55108166	55108166	+	Missense_Mutation	SNP	C	C	T	rs186910104	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018398.2	+1	reviewed	p.A1070V	0.507	354	0%	106	21.7%	5	60%	benign(0.006)	tolerated(0.06)	neutral(0.323)	NULL
DNAH12	201625	genome.wustl.edu	37	3	57443720	57443720	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178504.4	-1	validated	p.L999V	1.000	64	0%	94	26.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
ABHD6	57406	genome.wustl.edu	37	3	58260449	58260449	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020676.5	+1	validated	p.A196	0.000	106	0%	40	22.5%	7	42.8%	-	-	-	HMMPfam_Abhydrolase_1,superfamily_SSF53474
PXK	54899	genome.wustl.edu	37	3	58382767	58382767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017771.3	+1	provisional	p.V275A	0.653	201	0%	106	28.3%	2	100%	benign(0)	tolerated(1)	-	superfamily_Protein kinase-like (PK-like)
CADPS	8618	genome.wustl.edu	37	3	62477973	62477973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003716.3	-1	reviewed	p.R959H	1.000	183	0%	89	27%	1	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
CADPS	8618	genome.wustl.edu	37	3	62570925	62570925	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003716.3	-1	reviewed	p.P504	0.000	663	0%	235	32.3%	0	-	-	-	-	NULL
C3orf64	285203	genome.wustl.edu	37	3	69056969	69056969	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173654.1	-1	provisional	p.T105	0.002	72	0%	65	20%	5	20%	-	-	-	NULL
ROBO2	6092	genome.wustl.edu	37	3	77651546	77651546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002942.3	+1	reviewed	p.D1014N	1.000	327	0.3%	167	31.7%	18	44.4%	possibly_damaging(0.894)	deleterious(0.01)	deleterious(0.758)	NULL
CPOX	1371	genome.wustl.edu	37	3	98309560	98309560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000097.5	-1	reviewed	p.V243M	0.997	234	0%	216	16.2%	11	45.4%	possibly_damaging(0.809)	deleterious(0)	deleterious(0.749)	HMMPfam_Coprogen_oxidas,superfamily_Coprogen_oxidas
ATG3	64422	genome.wustl.edu	37	3	112256681	112256681	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022488.3	-1	provisional	p.G189	1.000	178	0%	52	23.1%	52	28.8%	-	-	-	NULL
KIAA2018	205717	genome.wustl.edu	37	3	113377243	113377243	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009899.2	-1	validated	p.R1096C	1.000	198	0%	63	19%	1	0%	benign(0.148)	deleterious(0)	neutral(0.458)	NULL
C3orf30	152405	genome.wustl.edu	37	3	118866132	118866132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152539.2	+1	validated	p.R366C	0.000	133	0%	84	22.6%	2	50%	possibly_damaging(0.633)	tolerated(0.08)	deleterious(0.521)	NULL
ARHGAP31	57514	genome.wustl.edu	37	3	119121096	119121096	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020754.2	+1	reviewed	p.S499	0.604	63	0%	42	23.8%	1	0%	-	-	-	NULL
HCLS1	3059	genome.wustl.edu	37	3	121353085	121353085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005335.4	-1	validated	p.P291L	0.018	150	0%	70	24.3%	86	34.8%	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	NULL
KALRN	8997	genome.wustl.edu	37	3	123988076	123988076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024660.3	+1	reviewed	p.R313W	1.000	22	0%	15	33.3%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
COPG1	22820	genome.wustl.edu	37	3	128973560	128973560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016128.3	+1	validated	p.V125M	1.000	122	0%	101	30.7%	81	43.2%	possibly_damaging(0.768)	deleterious(0)	deleterious(0.730)	HMMPfam_Adaptin_N,superfamily_ARM repeat
IFT122	55764	genome.wustl.edu	37	3	129183537	129183537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052985.2	+1	reviewed	p.R210Q	0.995	240	0.4%	111	16.2%	6	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00320,superfamily_WD40 repeat-like
RHO	6010	genome.wustl.edu	37	3	129251378	129251378	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000539.3	+1	reviewed	p.A233	0.049	170	0%	185	21.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
BFSP2	8419	genome.wustl.edu	37	3	133119387	133119387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003571.2	+1	reviewed	p.R154W	0.678	18	0%	36	25%	0	-	probably_damaging(0.997)	tolerated(0.19)	deleterious(0.516)	HMMPfam_Filament
TOPBP1	11073	genome.wustl.edu	37	3	133342208	133342208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007027.3	-1	reviewed	p.R1008W	0.001	208	0%	91	29.7%	4	25%	probably_damaging(0.986)	deleterious(0.04)	deleterious(0.783)	superfamily_BRCT domain
AMOTL2	51421	genome.wustl.edu	37	3	134080535	134080535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016201.2	-1	reviewed	p.A465V	0.995	20	0%	20	25%	13	23%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
CPB1	1360	genome.wustl.edu	37	3	148558743	148558743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001871.2	+1	reviewed	p.R152H	0.985	235	0.4%	78	30.8%	3	66.6%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
BCHE	590	genome.wustl.edu	37	3	165548799	165548799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000055.2	-1	reviewed	p.I8T	0.000	54	0%	14	28.6%	0	-	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
MYNN	55892	genome.wustl.edu	37	3	169498450	169498450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018657.3	+1	provisional	p.R378H	1.000	201	0%	100	33%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PHC3	80012	genome.wustl.edu	37	3	169867013	169867013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024947.3	-1	validated	p.P145H	1.000	237	0%	105	9.5%	12	8.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178916891	178916891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.R93Q	1.000	76	1.3%	58	25.9%	1	0%	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
PIK3CA	5290	genome.wustl.edu	37	3	178921548	178921548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.V344M	1.000	39	0%	39	30.8%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
PIK3CA	5290	genome.wustl.edu	37	3	178952086	178952086	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.H1047Q	0.722	174	0%	32	34.4%	3	33.3%	probably_damaging(0.964)	deleterious(0.03)	deleterious(0.771)	HMMSmart_PI3Kc,superfamily_Kinase_like
ZNF639	51193	genome.wustl.edu	37	3	179051071	179051071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016331.1	+1	provisional	p.I107V	0.662	34	0%	58	17.2%	12	25%	benign(0)	tolerated(0.91)	-	NULL
YEATS2	55689	genome.wustl.edu	37	3	183490341	183490341	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018023.4	+1	validated	p.S732	1.000	82	0%	51	27.5%	4	50%	-	-	-	NULL
DVL3	1857	genome.wustl.edu	37	3	183881485	183881485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004423.3	+1	reviewed	p.P68S	1.000	305	0%	368	26.9%	13	30.7%	benign(0.024)	deleterious(0)	neutral(0.446)	HMMPfam_DIX,HMMSmart_DAX
CLCN2	1181	genome.wustl.edu	37	3	184064584	184064584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004366.4	-1	reviewed	p.R836Q	1.000	116	0%	142	33.1%	7	0%	possibly_damaging(0.872)	tolerated(0.27)	neutral(0.373)	HMMPfam_CBS,superfamily_CBS-domain
AHSG	197	genome.wustl.edu	37	3	186338451	186338451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001622.2	+1	reviewed	p.P279L	0.000	86	0%	49	20.4%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
IL1RAP	3556	genome.wustl.edu	37	3	190326882	190326904	+	Frame_Shift_Del	DEL	ATATAGAATATGGCATTCAGAGG	ATATAGAATATGGCATTCAGAGG	-	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	ATATAGAATATGGCATTCAGAGG	ATATAGAATATGGCATTCAGAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002182.3	+1	reviewed	p.I151fs	0.183:0.057:0.002:0.247:0.264:0.831:0.829:0.512:0.005:0.008:0.000:0.002:0.001:0.000:0.001:0.287:0.309:0.596:0.600:0.328:0.125:0.007:0.008	-	-	-	-	-	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
MUC4	4585	genome.wustl.edu	37	3	195512220	195512220	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.H2077	0.669	1101	0%	1619	9.7%	2	0%	-	-	-	NULL
PCYT1A	5130	genome.wustl.edu	37	3	195956929	195956929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000419333	-1	known	p.E367K	1.000	134	0%	134	26.1%	15	80%	benign(0)	tolerated(0.51)	neutral(0.009)	NULL
UBXN7	26043	genome.wustl.edu	37	3	196083675	196083675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015562.1	-1	validated	p.R451C	1.000	265	0%	136	20.6%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_UBX,HMMSmart_SM00166,superfamily_Ubiquitin-like
FGFRL1	53834	genome.wustl.edu	37	4	1016144	1016144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004356.2	+1	reviewed	p.R78H	0.996	38	0%	48	14.6%	4	100%	possibly_damaging(0.637)	tolerated(0.09)	deleterious(0.519)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
WHSC1	7468	genome.wustl.edu	37	4	1918615	1918615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042424.2	+1	reviewed	p.R260C	1.000	118	0%	59	27.1%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT
ZFYVE28	57732	genome.wustl.edu	37	4	2306025	2306025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020972.2	-1	validated	p.S681L	0.001	24	0%	43	34.9%	5	40%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
SH3TC1	54436	genome.wustl.edu	37	4	8217960	8217960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018986.3	+1	validated	p.H202N	0.055	107	0%	152	24.3%	5	0%	possibly_damaging(0.926)	tolerated(0.07)	deleterious(0.694)	NULL
ZNF518B	85460	genome.wustl.edu	37	4	10444984	10444984	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053042.2	-1	validated	p.V990E	0.003	296	0%	159	14.5%	4	25%	benign(0.085)	tolerated(0.06)	neutral(0.329)	NULL
ZNF518B	85460	genome.wustl.edu	37	4	10445094	10445094	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053042.2	-1	validated	p.S953	0.007	240	0%	95	29.5%	3	33.3%	-	-	-	NULL
SLIT2	9353	genome.wustl.edu	37	4	20597382	20597384	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004787.1	+1	provisional	p.N1083in_frame_del	1.000:0.774:0.992	-	-	-	-	-	-	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_CA,superfamily_EGF/Laminin
C4orf52	389203	genome.wustl.edu	37	4	25929958	25929958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145432.1	+1	validated	p.A45T	1.000	162	0%	98	27.6%	37	40.5%	possibly_damaging(0.842)	tolerated(0.44)	neutral(0.335)	NULL
ARAP2	116984	genome.wustl.edu	37	4	36214067	36214067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015230.2	-1	reviewed	p.L362F	0.026	319	0%	106	21.7%	3	33.3%	benign(0.079)	tolerated(0.05)	neutral(0.351)	NULL
C4orf19	55286	genome.wustl.edu	37	4	37592462	37592462	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104629.1	+1	validated	p.H262R	0.000	143	0%	94	26.6%	28	17.8%	possibly_damaging(0.776)	tolerated(0.31)	neutral(0.317)	NULL
TMEM156	80008	genome.wustl.edu	37	4	39000433	39000433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024943.1	-1	provisional	p.Q62R	0.907	126	0%	61	27.9%	0	-	benign(0.004)	tolerated(0.1)	neutral(0.286)	NULL
SLC10A4	201780	genome.wustl.edu	37	4	48490832	48490832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152679.3	+1	validated	p.D397G	0.887	80	0%	189	24.9%	0	-	benign(0.009)	tolerated(0.08)	neutral(0.300)	NULL
USP46	64854	genome.wustl.edu	37	4	53468044	53468044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022832.3	-1	validated	p.A300V	1.000	219	0%	69	24.6%	9	55.5%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_Cysteine proteinases
TMPRSS11D	9407	genome.wustl.edu	37	4	68699023	68699023	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004262.2	-1	reviewed	p.S197	0.361	128	0%	38	23.7%	2	0%	-	-	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
YTHDC1	91746	genome.wustl.edu	37	4	69189940	69189940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031732.2	-1	validated	p.R451C	1.000	130	0%	33	33.3%	18	27.7%	unknown(0)	tolerated(0.09)	-	HMMPfam_YTH
SLC4A4	8671	genome.wustl.edu	37	4	72306364	72306364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134742.1	+1	reviewed	p.R280H	0.997	538	0%	148	31.1%	1	0%	probably_damaging(0.994)	deleterious(0.05)	deleterious(0.797)	HMMPfam_Band_3_cyto,superfamily_PTrfase/Anion_transptr
NUP54	53371	genome.wustl.edu	37	4	77051862	77051862	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017426.2	-1	reviewed	p.R335*	0.992	133	0%	67	23.9%	10	10%	-	-	-	NULL
GK2	2712	genome.wustl.edu	37	4	80328865	80328865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033214.2	-1	validated	p.V164I	0.488	284	0%	223	25.6%	0	-	benign(0.047)	tolerated(0.09)	neutral(0.299)	HMMPfam_FGGY_N,superfamily_SSF53067
WDFY3	23001	genome.wustl.edu	37	4	85731274	85731274	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014991.4	-1	reviewed	p.H704R	1.000	134	0%	31	22.6%	1	0%	benign(0.026)	tolerated(0.21)	neutral(0.045)	superfamily_ARM repeat
ARHGAP24	83478	genome.wustl.edu	37	4	86921730	86921730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025616.2	+1	validated	p.M701T	1.000	91	0%	56	17.9%	4	25%	possibly_damaging(0.7)	deleterious(0)	deleterious(0.696)	NULL
PTPN13	5783	genome.wustl.edu	37	4	87687592	87687592	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080685.2	+1	reviewed	p.R1422	0.965	310	0%	66	18.2%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
IBSP	3381	genome.wustl.edu	37	4	88732877	88732877	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004967.3	+1	reviewed	p.V257I	0.000	134	0.7%	80	36.2%	0	-	benign(0.051)	tolerated(0.28)	neutral(0.035)	HMMPfam_BSP_II
LEF1	51176	genome.wustl.edu	37	4	109000748	109000748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016269.4	-1	reviewed	p.G249S	1.000	534	0%	494	28.9%	2	50%	benign(0.049)	tolerated(0.71)	neutral(0.005)	NULL
AGXT2L1	64850	genome.wustl.edu	37	4	109677584	109677584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031279.3	-1	validated	p.T134A	1.000	157	0%	120	20%	0	-	benign(0.026)	tolerated(0.33)	neutral(0.025)	HMMPfam_Aminotran_3,superfamily_PLP-dependent transferases
PITX2	5308	genome.wustl.edu	37	4	111543595	111543595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000325.5	-1	reviewed	p.L8F	1.000	46	0%	48	14.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ARSJ	79642	genome.wustl.edu	37	4	114899941	114899941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024590.3	-1	validated	p.A17V	0.126	47	0%	56	19.6%	2	50%	benign(0.01)	deleterious(0.03)	neutral(0.365)	NULL
SEC24D	9871	genome.wustl.edu	37	4	119652625	119652625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014822.2	-1	reviewed	p.A905V	0.986	180	0%	71	28.2%	45	46.6%	benign(0.089)	tolerated(0.17)	neutral(0.066)	HMMPfam_Gelsolin,superfamily_C-terminal gelsolin-like domain of Sec23/24
ANKRD50	57182	genome.wustl.edu	37	4	125591640	125591640	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020337.2	-1	validated	p.L931*	0.815	120	0%	44	29.5%	1	0%	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
LARP1B	55132	genome.wustl.edu	37	4	129131184	129131184	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018078.2	+1	reviewed	p.P907	0.983	145	0%	115	21.7%	0	-	-	-	-	NULL
PCDH18	54510	genome.wustl.edu	37	4	138449703	138449703	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019035.3	-1	reviewed	p.D890G	1.000	203	0%	76	22.4%	3	33.3%	benign(0.032)	tolerated(0.45)	neutral(0.013)	NULL
SETD7	80854	genome.wustl.edu	37	4	140432984	140432984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030648.2	-1	validated	p.R312C	1.000	83	0%	26	15.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
GRIA2	2891	genome.wustl.edu	37	4	158234027	158234027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000826.3	+1	reviewed	p.Q222H	1.000	71	0%	29	31%	13	100%	probably_damaging(0.987)	tolerated(0.07)	deleterious(0.756)	HMMPfam_ANF_receptor,superfamily_SSF53822
FAM198B	51313	genome.wustl.edu	37	4	159076918	159076918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128424.1	-1	validated	p.T324A	0.747	164	0%	57	22.8%	12	0%	benign(0.044)	tolerated(0.44)	neutral(0.015)	NULL
SH3RF1	57630	genome.wustl.edu	37	4	170190191	170190191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020870.3	-1	reviewed	p.S58L	1.000	96	0%	102	21.6%	9	44.4%	benign(0)	tolerated(0.28)	neutral(0.032)	superfamily_RING/U-box
ASB5	140458	genome.wustl.edu	37	4	177136806	177136806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080874.2	-1	reviewed	p.L312P	1.000	265	0%	86	11.6%	0	-	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	HMMPfam_SOCS_box
ODZ3	55714	genome.wustl.edu	37	4	183675791	183675791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080477.1	+1	provisional	p.K1424R	1.000	131	0%	91	35.2%	0	-	benign(0.006)	tolerated(0.81)	neutral(0.001)	superfamily_ConA_like_lec_gl,superfamily_SSF101898,superfamily_SSF63829
MLF1IP	79682	genome.wustl.edu	37	4	185652122	185652122	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024629.3	-1	validated	p.G16	0.127	93	0%	178	24.2%	3	33.3%	-	-	-	NULL
FAT1	2195	genome.wustl.edu	37	4	187527259	187527259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.V3439I	0.000	241	0%	112	28.6%	14	42.8%	benign(0.005)	tolerated(0.72)	neutral(0.002)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
AHRR	57491	genome.wustl.edu	37	5	434213	434213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020731.3	+1	reviewed	p.P475Q	0.000	41	0%	53	22.6%	0	-	benign(0.284)	tolerated(0.2)	neutral(0.136)	NULL
SLC9A3	6550	genome.wustl.edu	37	5	476772	476772	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004174.2	-1	validated	p.S592	0.142	50	0%	80	23.7%	1	100%	-	-	-	NULL
KIAA0947	23379	genome.wustl.edu	37	5	5462905	5462905	+	Missense_Mutation	SNP	C	C	T	rs142087337	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015325.1	+1	validated	p.T1153M	0.995	225	0%	106	25.5%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
UBE2QL1	134111	genome.wustl.edu	37	5	6491409	6491409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145161.1	+1	provisional	p.V145M	1.000	124	0%	72	19.4%	2	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
PAPD7	11044	genome.wustl.edu	37	5	6754919	6754919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006999.4	+1	reviewed	p.G497D	0.197	36	0%	44	27.3%	7	42.8%	benign(0.029)	deleterious(0.01)	neutral(0.407)	NULL
CTNND2	1501	genome.wustl.edu	37	5	11159793	11159793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001332.2	-1	validated	p.A685V	0.996	359	0%	93	24.7%	4	25%	possibly_damaging(0.636)	tolerated(0.06)	deleterious(0.545)	HMMSmart_SM00185,superfamily_ARM repeat
CDH6	1004	genome.wustl.edu	37	5	31323144	31323144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004932.2	+1	reviewed	p.R701Q	1.000	133	0.8%	65	16.9%	9	33.3%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_Cadherin_C
ADAMTS12	81792	genome.wustl.edu	37	5	33662041	33662041	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030955.2	-1	reviewed	p.D340	1.000	376	0%	82	32.9%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
IL7R	3575	genome.wustl.edu	37	5	35876450	35876450	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002185.2	+1	reviewed	p.T414	0.000	186	0%	56	21.4%	3	0%	-	-	-	NULL
NADKD1	133686	genome.wustl.edu	37	5	36219756	36219756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085411.1	-1	validated	p.V196I	1.000	137	0%	59	30.5%	7	28.5%	probably_damaging(0.965)	tolerated(0.06)	deleterious(0.730)	superfamily_NAD kinase (Pfam 01513)
NIPBL	25836	genome.wustl.edu	37	5	37052613	37052613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133433.3	+1	reviewed	p.R2403H	1.000	175	0%	67	31.3%	23	4.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM repeat
LIFR	3977	genome.wustl.edu	37	5	38511953	38511953	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127671.1	-1	reviewed	p.D225	0.011	152	0.7%	32	25%	0	-	-	-	-	NULL
DAB2	1601	genome.wustl.edu	37	5	39377259	39377259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001343.2	-1	validated	p.V544I	0.000	115	0%	53	34%	18	5.5%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
HEATR7B2	133558	genome.wustl.edu	37	5	41018039	41018039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173489.4	-1	validated	p.G933R	0.675	118	0%	50	30%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
PLCXD3	345557	genome.wustl.edu	37	5	41382519	41382519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005473.2	-1	validated	p.R74Q	1.000	72	0%	25	20%	0	-	benign(0.209)	tolerated(0.47)	neutral(0.032)	superfamily_PLC-like_Pdiesterase_TIM-brl
PAIP1	10605	genome.wustl.edu	37	5	43527495	43527495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006451.4	-1	reviewed	p.R475C	1.000	190	0%	243	24.7%	91	41.7%	possibly_damaging(0.891)	deleterious(0.03)	deleterious(0.715)	NULL
SNX18	112574	genome.wustl.edu	37	5	53814691	53814691	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052870.2	+1	reviewed	p.T303	1.000	82	0%	118	22.9%	8	50%	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
SNX18	112574	genome.wustl.edu	37	5	53839092	53839092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102575.1	+1	reviewed	p.R569C	1.000	208	0.5%	111	29.7%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_BAR_3_WASP_bdg
LOC345645	345645	genome.wustl.edu	37	5	55572009	55572009	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342506.1	-1	model	p.S136	1.000	26	0%	44	27.3%	0	-	-	-	-	NULL
C5orf44	80006	genome.wustl.edu	37	5	64956625	64956625	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093755.1	+1	validated	p.G266	0.998	198	0.5%	70	22.9%	9	0%	-	-	-	HMMPfam_DUF974
MAP1B	4131	genome.wustl.edu	37	5	71492660	71492660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005909.3	+1	validated	p.V1160I	0.836	124	0%	53	26.4%	0	-	unknown(0)	tolerated(0.25)	-	NULL
ZNF366	167465	genome.wustl.edu	37	5	71756473	71756473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152625.1	-1	provisional	p.T284M	0.000	133	0%	142	29.6%	1	0%	benign(0.03)	deleterious(0.05)	neutral(0.347)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GFM2	84340	genome.wustl.edu	37	5	74028873	74028873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032380.3	-1	reviewed	p.V521M	1.000	175	0%	56	16.1%	13	38.4%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	superfamily_EF-G C-terminal domain-like
SV2C	22987	genome.wustl.edu	37	5	75428011	75428011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014979.1	+1	provisional	p.G146S	1.000	523	0%	120	32.5%	0	-	possibly_damaging(0.861)	deleterious(0.03)	deleterious(0.698)	superfamily_MFS_gen_substrate_transporter
AGGF1	55109	genome.wustl.edu	37	5	76358892	76358892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018046.3	+1	validated	p.R654W	0.962	140	0%	71	22.5%	15	53.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_G-patch,HMMSmart_SM00443
BHMT	635	genome.wustl.edu	37	5	78415122	78415122	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001713.2	+1	reviewed	p.N69	0.988	155	0%	107	35.5%	0	-	-	-	-	HMMPfam_S-methyl_trans,superfamily_S_methyl_trans
MSH3	4437	genome.wustl.edu	37	5	80150106	80150106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002439.3	+1	reviewed	p.Y991H	1.000	134	0%	42	19%	9	33.3%	possibly_damaging(0.655)	tolerated(0.32)	neutral(0.255)	HMMPfam_MutS_V,HMMSmart_SM00534,superfamily_P-loop containing nucleoside triphosphate hydrolases
MCC	4163	genome.wustl.edu	37	5	112439958	112439958	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085377.1	-1	reviewed	p.S374	0.006	158	0%	54	22.2%	0	-	-	-	-	NULL
TICAM2	353376	genome.wustl.edu	37	5	114916629	114916629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021649.5	-1	validated	p.G109R	0.936	252	0%	147	24.5%	5	80%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TIR
DMXL1	1657	genome.wustl.edu	37	5	118539073	118539073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005509.4	+1	validated	p.E2602G	1.000	145	0.7%	64	21.9%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
ACSL6	23305	genome.wustl.edu	37	5	131308493	131308493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009185.1	-1	validated	p.R421H	1.000	133	0%	68	29.4%	0	-	benign(0.21)	tolerated(0.19)	neutral(0.070)	superfamily_SSF56801
AFF4	27125	genome.wustl.edu	37	5	132269930	132269930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014423.3	-1	validated	p.S276N	1.000	446	0%	218	21.6%	6	16.6%	probably_damaging(0.987)	tolerated(1)	neutral(0.436)	HMMPfam_AF-4
TCF7	6932	genome.wustl.edu	37	5	133479302	133479302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003202.3	+1	validated	p.S349L	0.970	90	0%	71	25.4%	4	0%	benign(0.074)	deleterious(0.03)	neutral(0.369)	superfamily_HMG-box
H2AFY	9555	genome.wustl.edu	37	5	134670675	134670675	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138610.2	-1	reviewed	p.D370	0.934	190	0%	119	21%	312	43.2%	-	-	-	NULL
HSPA9	3313	genome.wustl.edu	37	5	137903249	137903249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004134.6	-1	reviewed	p.A204D	1.000	154	0%	146	21.2%	55	45.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HSP70,superfamily_SSF53067
SIL1	64374	genome.wustl.edu	37	5	138286898	138286898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037633.1	-1	reviewed	p.R331C	1.000	59	0%	37	24.3%	92	46.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139885338	139885338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020690.4	+1	reviewed	p.A1098T	1.000	267	0%	111	20.7%	7	14.2%	probably_damaging(0.991)	tolerated(0.08)	deleterious(0.744)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
HARS2	23438	genome.wustl.edu	37	5	140077641	140077641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012208.2	+1	reviewed	p.R480H	1.000	214	0%	165	24.8%	18	61.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HGTP_anticodon,superfamily_Anticodon_bd
PCDHA3	56145	genome.wustl.edu	37	5	140182165	140182165	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018906.2	+1	reviewed	p.T461	0.833	175	0%	268	28%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA4	56144	genome.wustl.edu	37	5	140188703	140188703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018907.2	+1	reviewed	p.R644H	0.013	112	0%	206	22.8%	0	-	possibly_damaging(0.485)	deleterious(0.03)	deleterious(0.525)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140229709	140229709	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031857.1	+1	reviewed	p.P543	0.316	47	0%	68	54.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140256905	140256905	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018903.2	+1	reviewed	p.V616	0.000	301	0%	606	27.9%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB4	56131	genome.wustl.edu	37	5	140503711	140503711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018938.2	+1	reviewed	p.R711W	0.001	60	0%	126	25.4%	9	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PCDHB10	56126	genome.wustl.edu	37	5	140574261	140574261	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018930.3	+1	reviewed	p.A712	0.000	59	0%	143	35%	9	22.2%	-	-	-	NULL
PCDHB12	56124	genome.wustl.edu	37	5	140589075	140589075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018932.3	+1	reviewed	p.A199V	0.001	176	0%	400	27.8%	0	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGA3	56112	genome.wustl.edu	37	5	140723745	140723745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018916.3	+1	reviewed	p.A49T	0.989	61	0%	102	12.7%	0	-	benign(0.015)	deleterious(0.02)	neutral(0.384)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA3	56112	genome.wustl.edu	37	5	140723837	140723837	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018916.3	+1	reviewed	p.P79	0.002	45	0%	117	23.1%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGB2	56103	genome.wustl.edu	37	5	140739909	140739909	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018923.2	+1	reviewed	p.S69	0.020	70	0%	123	35.8%	0	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140744697	140744697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018918.2	+1	reviewed	p.T267M	0.938	47	0%	108	10.2%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA5	56110	genome.wustl.edu	37	5	140745886	140745886	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018918.2	+1	reviewed	p.A663	0.013	90	0%	169	16.6%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140802950	140802950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018914.2	+1	reviewed	p.R719H	0.150	165	0%	282	26.2%	3	0%	possibly_damaging(0.496)	tolerated(0.13)	neutral(0.418)	NULL
RELL2	285613	genome.wustl.edu	37	5	141019613	141019613	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130029.1	+1	validated	p.G210	0.009	22	0%	44	20.5%	1	0%	-	-	-	NULL
NR3C1	2908	genome.wustl.edu	37	5	142779763	142779763	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024094.1	-1	reviewed	p.R214	0.986	94	0%	158	21.5%	3	0%	-	-	-	HMMPfam_GCR
AFAP1L1	134265	genome.wustl.edu	37	5	148695476	148695476	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152406.2	+1	validated	p.H371	0.172	98	0%	92	22.8%	3	0%	-	-	-	NULL
NDST1	3340	genome.wustl.edu	37	5	149915419	149915419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001543.4	+1	validated	p.R470H	1.000	69	0%	81	21%	10	20%	probably_damaging(0.995)	tolerated(0.06)	deleterious(0.780)	NULL
LSM11	134353	genome.wustl.edu	37	5	157178402	157178402	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173491.2	+1	provisional	p.H151	0.310	145	0%	103	11.7%	1	0%	-	-	-	NULL
GABRB2	2561	genome.wustl.edu	37	5	160763741	160763741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021911.2	-1	reviewed	p.R193C	1.000	134	0%	75	32%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
WWC1	23286	genome.wustl.edu	37	5	167835561	167835561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015238.2	+1	reviewed	p.S257L	0.998	114	0%	36	19.4%	31	22.5%	benign(0.188)	deleterious(0.05)	neutral(0.363)	NULL
SLIT3	6586	genome.wustl.edu	37	5	168244395	168244395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003062.2	-1	validated	p.T235A	0.361	129	0.8%	61	16.4%	2	0%	benign(0.023)	tolerated(0.79)	neutral(0.002)	HMMSmart_SM00082,superfamily_L domain-like
STK10	6793	genome.wustl.edu	37	5	171509422	171509422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005990.3	-1	reviewed	p.V633M	0.001	204	0%	185	18.9%	10	20%	benign(0.394)	tolerated(0.25)	neutral(0.164)	NULL
NKX2-5	1482	genome.wustl.edu	37	5	172661927	172661927	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004387.3	-1	reviewed	p.E54*	1.000	15	0%	22	31.8%	0	-	-	-	-	NULL
DRD1	1812	genome.wustl.edu	37	5	174868816	174868816	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000794.3	-1	reviewed	p.D429	0.127	402	0%	403	27.5%	0	-	-	-	-	NULL
FGFR4	2264	genome.wustl.edu	37	5	176520336	176520336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022963.2	+1	reviewed	p.T354I	0.650	38	0%	65	13.8%	0	-	benign(0.099)	tolerated(0.27)	neutral(0.041)	NULL
LMAN2	10960	genome.wustl.edu	37	5	176761349	176761349	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006816.2	-1	reviewed	p.P282	0.014	153	0%	106	14.2%	343	23.9%	-	-	-	NULL
DBN1	1627	genome.wustl.edu	37	5	176887655	176887655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080881.2	-1	reviewed	p.S276L	0.751	330	0%	535	23%	122	45.9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DBN1	1627	genome.wustl.edu	37	5	176894494	176894494	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080881.2	-1	reviewed	p.N157	0.759	56	0%	95	21.1%	78	46.1%	-	-	-	NULL
B4GALT7	11285	genome.wustl.edu	37	5	177031311	177031311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007255.2	+1	reviewed	p.V61A	0.089	15	0%	29	27.6%	20	25%	benign(0)	tolerated(0.22)	neutral(0.042)	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
RNF130	55819	genome.wustl.edu	37	5	179407199	179407199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018434.4	-1	reviewed	p.R232H	1.000	472	0%	340	25.3%	153	30%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FLT4	2324	genome.wustl.edu	37	5	180046744	180046744	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182925.4	-1	reviewed	p.F856	0.991	36	0%	37	40.5%	2	0%	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP
BTNL3	10917	genome.wustl.edu	37	5	180431751	180431751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_197975.1	+1	validated	p.R284Q	0.001	267	0.4%	183	27.9%	1	0%	possibly_damaging(0.945)	tolerated(0.32)	neutral(0.414)	NULL
BTNL3	10917	genome.wustl.edu	37	5	180432378	180432378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_197975.1	+1	validated	p.V303I	0.095	148	0%	144	18.1%	0	-	possibly_damaging(0.574)	tolerated(0.08)	deleterious(0.497)	HMMSmart_PRY
IRF4	3662	genome.wustl.edu	37	6	397164	397164	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002460.2	+1	validated	p.P183	0.203	120	0%	167	25.1%	2	0%	-	-	-	NULL
RREB1	6239	genome.wustl.edu	37	6	7231669	7231669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003699.3	+1	reviewed	p.T1113A	0.008	16	0%	26	19.2%	8	50%	benign(0)	tolerated(0.41)	neutral(0.015)	NULL
BTN1A1	696	genome.wustl.edu	37	6	26508941	26508941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001732.2	+1	validated	p.V374M	1.000	178	0%	146	21.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SPRY,HMMSmart_SM00449
SCAND3	114821	genome.wustl.edu	37	6	28540488	28540488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052923.1	-1	provisional	p.R1060W	0.999	62	0%	30	23.3%	1	0%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	NULL
SCAND3	114821	genome.wustl.edu	37	6	28540694	28540694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052923.1	-1	provisional	p.A991V	0.923	114	0%	45	22.2%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
GABBR1	2550	genome.wustl.edu	37	6	29599357	29599357	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001470.2	-1	reviewed	p.P35	1.000	84	0%	127	25.2%	0	-	-	-	-	HMMSmart_SM00032,superfamily_Complement control module/SCR domain
DHX16	8449	genome.wustl.edu	37	6	30623004	30623004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003587.4	-1	reviewed	p.R924H	1.000	155	0%	129	20.9%	45	40%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_DUF1605
HLA-C	3107	genome.wustl.edu	37	6	31239108	31239108	+	Missense_Mutation	SNP	T	T	C	rs112994647		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002117.4	-1	reviewed	p.R121G	0.002	12	0%	12	41.7%	3476	49.1%	possibly_damaging(0.813)	tolerated(0.06)	deleterious(0.629)	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
ZBTB22	9278	genome.wustl.edu	37	6	33284384	33284384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145338.1	-1	validated	p.A104T	1.000	95	0%	76	28.9%	13	53.8%	probably_damaging(0.98)	tolerated(0.09)	deleterious(0.720)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
GRM4	2914	genome.wustl.edu	37	6	34026904	34026904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000841.1	-1	reviewed	p.R292C	1.000	39	0%	45	22.2%	0	-	benign(0.036)	deleterious(0.01)	neutral(0.408)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
FTSJD2	23070	genome.wustl.edu	37	6	37429829	37429829	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015050.2	+1	validated	p.R426*	1.000	454	0%	207	24.6%	8	0%	-	-	-	HMMPfam_FtsJ,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
CCDC167	154467	genome.wustl.edu	37	6	37450966	37450966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138493.2	-1	validated	p.M97T	0.958	299	0%	263	25.5%	75	32%	benign(0.004)	deleterious(0.02)	neutral(0.383)	NULL
KCNK5	8645	genome.wustl.edu	37	6	39158853	39158853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003740.3	-1	reviewed	p.S438L	0.997	114	0%	97	20.6%	2	0%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
KLHDC3	116138	genome.wustl.edu	37	6	42986253	42986253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057161.2	+1	reviewed	p.P231L	0.928	142	0%	196	24.5%	49	32.6%	benign(0.001)	tolerated(0.32)	neutral(0.024)	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
TJAP1	93643	genome.wustl.edu	37	6	43470039	43470039	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454762	+1	known	p.G61S	0.015	151	0%	141	23.4%	11	45.4%	-	-	-	NULL
POLH	5429	genome.wustl.edu	37	6	43565515	43565515	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006502.2	+1	reviewed	p.T191	0.671	357	0%	185	17.3%	9	0%	-	-	-	HMMPfam_IMS,superfamily_DNA/RNA polymerases
TMEM151B	441151	genome.wustl.edu	37	6	44240886	44240886	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137560.1	+1	validated	p.Y73	1.000	321	0%	419	26.5%	0	-	-	-	-	NULL
PKHD1	5314	genome.wustl.edu	37	6	51618115	51618115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138694.3	-1	reviewed	p.R2945H	0.010	113	0%	29	20.7%	0	-	benign(0.001)	tolerated(0.16)	neutral(0.059)	NULL
PKHD1	5314	genome.wustl.edu	37	6	51929823	51929823	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138694.3	-1	reviewed	p.V302	0.998	135	0%	85	9.4%	0	-	-	-	-	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
DST	667	genome.wustl.edu	37	6	56510679	56510679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370769	-1	known	p.R377H	0.997	117	0%	53	18.9%	1	100%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	superfamily_Spectrin repeat
COL19A1	1310	genome.wustl.edu	37	6	70890359	70890359	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001858.4	+1	reviewed	p.R907*	0.997	580	0%	229	27.1%	0	-	-	-	-	HMMPfam_Collagen
HTR1B	3351	genome.wustl.edu	37	6	78172393	78172393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000863.1	-1	provisional	p.T243M	1.000	101	0%	123	19.5%	1	0%	probably_damaging(0.967)	tolerated(0.1)	deleterious(0.696)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF292	23036	genome.wustl.edu	37	6	87965639	87965639	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015021.1	+1	validated	p.Y764	0.754	90	0%	23	21.7%	0	-	-	-	-	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NCOA7	135112	genome.wustl.edu	37	6	126242113	126242113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181782.3	+1	validated	p.R757C	1.000	112	0%	41	17.1%	22	59%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MED23	9439	genome.wustl.edu	37	6	131919864	131919864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004830.2	-1	reviewed	p.R753H	1.000	340	0%	117	23.9%	8	12.5%	probably_damaging(0.976)	deleterious(0.01)	deleterious(0.824)	NULL
PCMT1	5110	genome.wustl.edu	37	6	150123392	150123392	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005389.2	+1	validated	p.G187	0.964	95	0%	49	20.4%	70	44.2%	-	-	-	HMMPfam_PCMT,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
RAET1E	135250	genome.wustl.edu	37	6	150210538	150210538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139165.1	-1	provisional	p.D190N	0.000	248	0%	168	23.2%	0	-	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain
TIAM2	26230	genome.wustl.edu	37	6	155571046	155571046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012454.3	+1	reviewed	p.E1298D	1.000	237	0%	206	23.3%	1	100%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	superfamily_DBL homology domain (DH-domain)
MLLT4	4301	genome.wustl.edu	37	6	168363235	168363235	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000507704	+1	known	p.T134M	0.969	116	0%	135	25.9%	28	46.4%	-	-	-	NULL
DACT2	168002	genome.wustl.edu	37	6	168708497	168708497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_214462.3	-1	validated	p.R647H	0.003	27	0%	36	33.3%	25	52%	probably_damaging(0.957)	tolerated(0.19)	neutral(0.450)	NULL
THBS2	7058	genome.wustl.edu	37	6	169648886	169648886	+	Missense_Mutation	SNP	G	G	A	rs149505756	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003247.2	-1	reviewed	p.R79W	0.939	263	0%	244	27.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_TSPN,superfamily_ConA_like_lec_gl
FAM20C	56975	genome.wustl.edu	37	7	208950	208950	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020223.2	+1	validated	p.Y279	0.974	178	0.6%	278	23.7%	29	27.5%	-	-	-	NULL
BRAT1	221927	genome.wustl.edu	37	7	2577967	2577967	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152743.2	-1	provisional	p.S734	0.000	29	0%	56	19.6%	47	36.1%	-	-	-	NULL
CARD11	84433	genome.wustl.edu	37	7	2962846	2962846	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032415.3	-1	validated	p.R688*	0.010	27	0%	23	21.7%	7	0%	-	-	-	HMMSmart_PDZ,superfamily_PDZ
SDK1	221935	genome.wustl.edu	37	7	4285306	4285306	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152744.3	+1	validated	e44-2	0.996	76	0%	49	26.5%	0	-	-	-	-	-
FSCN1	6624	genome.wustl.edu	37	7	5643002	5643002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003088.2	+1	validated	p.T316M	1.000	89	0%	92	17.4%	29	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Actin_crosslink,HMMPfam_Fascin
GRID2IP	392862	genome.wustl.edu	37	7	6537806	6537806	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145118.1	-1	validated	p.R1151	0.000	45	0%	41	31.7%	0	-	-	-	-	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
SP4	6671	genome.wustl.edu	37	7	21469657	21469657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003112.3	+1	validated	p.S292G	1.000	198	0%	221	29.4%	1	0%	benign(0)	tolerated(1)	-	NULL
MIR1183	100302122	genome.wustl.edu	37	7	21510691	21510691	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408856	+1	known	NULL	0.001	194	0%	109	22.9%	0	-	-	-	-	-
DNAH11	8701	genome.wustl.edu	37	7	21840783	21840783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003777.3	+1	reviewed	p.T3359M	0.998	113	0%	44	20.5%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
CDCA7L	55536	genome.wustl.edu	37	7	21951373	21951373	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018719.4	-1	validated	e3-1	0.444	294	0%	129	27.9%	0	-	-	-	-	-
OSBPL3	26031	genome.wustl.edu	37	7	24874256	24874256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015550.2	-1	reviewed	p.L532P	1.000	162	0%	57	17.5%	14	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Oxysterol_BP
C7orf72	100130988	genome.wustl.edu	37	7	50179777	50179777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000297001	+1	known	p.T326I	1.000	54	0%	27	29.6%	0	-	benign(0.381)	tolerated(0.05)	neutral(0.467)	NULL
LOC100132308	100132308	genome.wustl.edu	37	7	63022839	63022839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001715240.2	+1	model	p.T287I	1.000	68	1.5%	72	12.5%	0	-	-	-	-	HMMPfam_Nucleoside_tran
ELN	2006	genome.wustl.edu	37	7	73471025	73471025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000501.2	+1	reviewed	p.A447T	0.956	40	0%	58	25.9%	9	0%	unknown(0)	tolerated(0.08)	-	NULL
CLIP2	7461	genome.wustl.edu	37	7	73790905	73790905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003388.4	+1	reviewed	p.R725H	0.698	38	0%	60	16.7%	2	0%	possibly_damaging(0.478)	tolerated(0.12)	neutral(0.418)	NULL
RHBDD2	57414	genome.wustl.edu	37	7	75513122	75513122	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040456.1	+1	validated	p.Y231	0.271	152	0%	184	25%	144	41.6%	possibly_damaging(0.704)	deleterious(0)	deleterious(0.698)	NULL
MAGI2	9863	genome.wustl.edu	37	7	77885378	77885378	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012301.3	-1	reviewed	p.G643	0.130	164	0%	46	15.2%	0	-	-	-	-	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
ENSG00000240720	0	genome.wustl.edu	37	7	91793685	91793685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430130	-1	known	p.S278G	0.000	8	0.000	13	0.308	0	-	benign(0)	tolerated(0.55)	neutral(0.007)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
TECPR1	25851	genome.wustl.edu	37	7	97857397	97857397	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015395.1	-1	provisional	p.T814	0.071	255	0%	308	24%	4	25%	-	-	-	NULL
C7orf43	55262	genome.wustl.edu	37	7	99753036	99753036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018275.3	-1	predicted	p.V480M	0.989	119	0%	140	26.4%	30	36.6%	possibly_damaging(0.701)	tolerated(0.1)	deleterious(0.538)	NULL
TSC22D4	81628	genome.wustl.edu	37	7	100064725	100064725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030935.3	-1	provisional	p.R349W	1.000	60	0%	85	23.5%	62	25.8%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_TSC22
SLC26A5	375611	genome.wustl.edu	37	7	103033465	103033465	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198999.2	-1	reviewed	p.Y340	0.917	366	0%	141	27.7%	1	0%	-	-	-	HMMPfam_Sulfate_transp
MLL5	55904	genome.wustl.edu	37	7	104748202	104748202	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018682.3	+1	reviewed	p.R1100*	1.000	233	0.4%	69	14.5%	9	0%	-	-	-	NULL
ATXN7L1	222255	genome.wustl.edu	37	7	105254972	105254972	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020725.1	-1	validated	p.A603	0.999	712	0.3%	640	23.7%	3	0%	-	-	-	NULL
LMOD2	442721	genome.wustl.edu	37	7	123296225	123296225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207163.1	+1	validated	p.M70V	1.000	101	0%	31	12.9%	0	-	possibly_damaging(0.866)	tolerated(0.17)	neutral(0.395)	HMMPfam_Tropomodulin
GCC1	79571	genome.wustl.edu	37	7	127223256	127223256	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024523.5	-1	reviewed	p.Y380	0.139	116	0%	109	22.9%	7	42.8%	-	-	-	NULL
CPA1	1357	genome.wustl.edu	37	7	130021599	130021599	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001868.2	+1	reviewed	p.D92	0.059	60	0%	53	26.4%	0	-	-	-	-	HMMPfam_Propep_M14,superfamily_Prot_inh_propept
PLXNA4	91584	genome.wustl.edu	37	7	131844247	131844247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.A1549T	1.000	275	0%	204	21.1%	1	100%	benign(0.018)	tolerated(0.46)	neutral(0.013)	superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl
PLXNA4	91584	genome.wustl.edu	37	7	131912337	131912337	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.P585	0.460	149	0%	96	19.8%	1	0%	-	-	-	NULL
EXOC4	60412	genome.wustl.edu	37	7	133689780	133689780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021807.3	+1	reviewed	p.S822G	1.000	143	0%	50	18%	17	29.4%	probably_damaging(0.979)	deleterious(0.03)	deleterious(0.786)	NULL
CREB3L2	64764	genome.wustl.edu	37	7	137593098	137593098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194071.2	-1	validated	p.R223H	0.995	122	0%	61	24.6%	7	14.2%	possibly_damaging(0.897)	tolerated(0.06)	deleterious(0.676)	NULL
WEE2	494551	genome.wustl.edu	37	7	141427170	141427170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105558.1	+1	validated	p.R487W	0.018	125	0%	59	35.6%	0	-	benign(0.032)	tolerated(0.1)	neutral(0.288)	NULL
MGAM	8972	genome.wustl.edu	37	7	141803073	141803073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.T1777M	0.001	97	0%	48	29.2%	0	-	possibly_damaging(0.468)	tolerated(0.31)	neutral(0.180)	NULL
TRBJ2-2	28628	genome.wustl.edu	37	7	142494252	142494252	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390413	+1	known	p.P3	0.001	96	0%	131	29%	3	0%	unknown(0)	-	-	NULL
KEL	3792	genome.wustl.edu	37	7	142658918	142658918	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000460479	-1	known	p.P26S	0.000	325	0%	103	31.1%	0	-	-	-	-	NULL
ZYX	7791	genome.wustl.edu	37	7	143087677	143087677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010972.1	+1	reviewed	p.G541R	1.000	106	0%	111	32.4%	332	27.4%	benign(0.39)	deleterious(0)	deleterious(0.570)	HMMPfam_LIM,HMMSmart_LIM
ARHGEF5	7984	genome.wustl.edu	37	7	144059845	144059845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005435.3	+1	reviewed	p.M28T	0.818	487	0%	410	8.5%	14	14.2%	possibly_damaging(0.55)	deleterious(0.01)	deleterious(0.593)	NULL
ZNF786	136051	genome.wustl.edu	37	7	148768734	148768734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152411.3	-1	validated	p.R377H	0.101	5	0.000	16	0.250	3	33.3%	benign(0.108)	tolerated(0.06)	neutral(0.331)	NULL
SSPO	23145	genome.wustl.edu	37	7	149486424	149486424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378016	+1	known	p.P1467L	0.008	18	0%	37	24.3%	0	-	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
SSPO	23145	genome.wustl.edu	37	7	149488759	149488759	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000378016	+1	known	p.H1737R	0.002	22	0%	24	29.2%	0	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
SSPO	23145	genome.wustl.edu	37	7	149492764	149492764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000262089	+1	known	p.A1226T	0.000	91	0%	105	22.9%	0	-	-	-	-	NULL
ABP1	26	genome.wustl.edu	37	7	150555924	150555924	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000480582	+1	known	p.A61V	0.028	29	0%	38	26.3%	203	52.7%	-	-	-	HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain
KCNH2	3757	genome.wustl.edu	37	7	150648174	150648174	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000238.2	-1	reviewed	p.S660	0.992	104	0%	111	30.6%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
KCNH2	3757	genome.wustl.edu	37	7	150648826	150648826	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000238.2	-1	reviewed	p.L552S	1.000	86	0%	77	19.5%	3	66.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KCNH2	3757	genome.wustl.edu	37	7	150648890	150648890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000238.2	-1	reviewed	p.R531W	1.000	67	0%	64	31.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NOS3	4846	genome.wustl.edu	37	7	150696408	150696408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000603.4	+1	reviewed	p.G363S	1.000	34	0%	44	18.2%	3	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_NO_synthase,superfamily_Nitric oxide (NO) synthase oxygenase domain
ASIC3	9311	genome.wustl.edu	37	7	150746413	150746413	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020321.2	+1	reviewed	p.A147	0.373	65	0%	91	26.4%	0	-	-	-	-	HMMPfam_ASC
PTPRN2	5799	genome.wustl.edu	37	7	157475601	157475601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002847.3	-1	reviewed	p.Q606R	0.001	318	0%	404	24.3%	0	-	benign(0.004)	tolerated(0.14)	neutral(0.249)	NULL
ARHGEF10	9639	genome.wustl.edu	37	8	1882048	1882048	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014629.2	+1	reviewed	p.T1054	0.000	352	0%	362	22.4%	7	57.1%	-	-	-	superfamily_WD40_like
SGK223	157285	genome.wustl.edu	37	8	8175905	8175905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080826.1	-1	validated	p.G1327E	1.000	56	0%	69	17.4%	12	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
KIAA1456	57604	genome.wustl.edu	37	8	12863856	12863856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020844.2	+1	validated	p.A49T	0.994	155	0.6%	46	8.7%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_Methyltransf_11,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
SLC7A2	6542	genome.wustl.edu	37	8	17417900	17417900	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003046.5	+1	validated	p.S493	0.000	154	0%	64	29.7%	0	-	-	-	-	NULL
MTUS1	57509	genome.wustl.edu	37	8	17612057	17612057	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001924.2	-1	reviewed	p.I420	0.000	149	0%	134	20.9%	7	14.2%	-	-	-	NULL
XPO7	23039	genome.wustl.edu	37	8	21856273	21856273	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100161.1	+1	validated	p.R794*	1.000	340	0%	227	26.9%	9	0%	-	-	-	superfamily_ARM repeat
SORBS3	10174	genome.wustl.edu	37	8	22423964	22423964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005775.4	+1	validated	p.R353W	0.926	89	1.1%	124	26.6%	9	22.2%	probably_damaging(0.968)	deleterious(0.02)	deleterious(0.793)	superfamily_SH3-domain
NEFL	4747	genome.wustl.edu	37	8	24813515	24813515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000221169	-1	known	p.R172H	0.997	11	0%	25	28%	0	-	-	-	-	HMMPfam_Filament
ADRA1A	148	genome.wustl.edu	37	8	26721757	26721757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033303.3	-1	reviewed	p.G244R	0.001	108	0%	127	22.8%	0	-	benign(0.133)	deleterious(0.02)	neutral(0.394)	HMMPfam_7tm_1,superfamily_SSF81321
PTK2B	2185	genome.wustl.edu	37	8	27277461	27277461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004103.3	+1	reviewed	p.R85Q	1.000	179	0.6%	80	26.3%	8	25%	benign(0)	tolerated(0.99)	-	HMMSmart_SM00295
INTS9	55756	genome.wustl.edu	37	8	28627424	28627424	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018250.3	-1	reviewed	p.F594	0.401	152	0.7%	104	19.2%	27	37%	-	-	-	NULL
KIF13B	23303	genome.wustl.edu	37	8	29023195	29023195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015254.3	-1	validated	p.T418M	1.000	331	0%	122	27%	8	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MBOAT4	619373	genome.wustl.edu	37	8	29990077	29990077	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100916.1	-1	validated	p.A230	0.000	200	0%	70	25.7%	0	-	-	-	-	HMMPfam_MBOAT
FUT10	84750	genome.wustl.edu	37	8	33318925	33318925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032664.3	-1	validated	p.V16I	0.049	156	0%	68	20.6%	2	50%	benign(0.001)	tolerated(0.76)	neutral(0.001)	HMMPfam_Glyco_transf_10
C8orf86	389649	genome.wustl.edu	37	8	38370055	38370055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000437935	-1	known	p.L117M	0.000	130	0%	104	26%	0	-	unknown(0)	-	-	NULL
AP3M2	10947	genome.wustl.edu	37	8	42025187	42025187	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134296.1	+1	reviewed	p.L339	1.000	215	0%	137	21.2%	4	25%	-	-	-	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
HGSNAT	138050	genome.wustl.edu	37	8	43013804	43013804	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152419.2	+1	reviewed	p.H107	0.001	218	0.5%	106	16%	5	20%	-	-	-	NULL
OPRK1	4986	genome.wustl.edu	37	8	54147372	54147372	+	Missense_Mutation	SNP	G	G	A	rs143457105		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000912.3	-1	validated	p.S186L	1.000	175	0%	104	19.2%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMPfam_7tm_1,superfamily_SSF81321
SDR16C6P	442388	genome.wustl.edu	37	8	57294520	57294520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444271	-1	known	p.T238I	0.000	98	0%	45	28.9%	0	-	-	-	-	superfamily_NAD(P)-binding Rossmann-fold domains
CA8	767	genome.wustl.edu	37	8	61137107	61137107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004056.4	-1	reviewed	p.T205I	1.000	145	0%	50	14%	17	29.4%	benign(0.006)	tolerated(0.21)	neutral(0.044)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
ZNF704	619279	genome.wustl.edu	37	8	81553673	81553673	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033723.1	-1	provisional	p.Y389	0.972	203	0.5%	94	16%	4	25%	-	-	-	NULL
RUNX1T1	862	genome.wustl.edu	37	8	93088199	93088199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175634.1	-1	reviewed	p.C28R	1.000	158	0%	81	27.2%	0	-	possibly_damaging(0.526)	deleterious(0.01)	deleterious(0.583)	NULL
SPAG1	6674	genome.wustl.edu	37	8	101190137	101190137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003114.3	+1	reviewed	p.R132C	1.000	198	0%	79	16.5%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ABRA	137735	genome.wustl.edu	37	8	107782309	107782309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139166.4	-1	validated	p.A37V	0.992	148	0%	119	22.7%	0	-	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	NULL
TAF2	6873	genome.wustl.edu	37	8	120744387	120744387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003184.3	-1	reviewed	p.A1126V	0.000	439	0%	143	24.5%	16	18.7%	benign(0)	tolerated(1)	-	NULL
HAS2	3037	genome.wustl.edu	37	8	122641117	122641117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005328.2	-1	reviewed	p.K155R	0.986	337	0%	164	25.6%	0	-	benign(0)	tolerated(0.69)	neutral(0.002)	superfamily_SSF53448
ATAD2	29028	genome.wustl.edu	37	8	124382176	124382176	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014109.3	-1	reviewed	p.D272	0.998	458	0%	219	22.8%	3	33.3%	-	-	-	HMMPfam_YL1
KLHL38	340359	genome.wustl.edu	37	8	124665040	124665040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081675.2	-1	validated	p.R43W	0.000	104	0%	56	28.6%	0	-	benign(0)	tolerated(0.22)	neutral(0.042)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
LRRC6	23639	genome.wustl.edu	37	8	133637585	133637585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012472.3	-1	provisional	p.T257A	1.000	543	0%	227	25.1%	11	36.3%	probably_damaging(0.998)	tolerated(0.18)	deleterious(0.530)	NULL
TG	7038	genome.wustl.edu	37	8	133900283	133900283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.A744V	0.003	122	0%	44	27.3%	0	-	benign(0.001)	tolerated(0.99)	-	superfamily_Thyroglobulin type-1 domain
COL22A1	169044	genome.wustl.edu	37	8	139768056	139768056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152888.1	-1	validated	p.A640V	0.027	184	0%	133	29.3%	1	100%	unknown(0)	tolerated(0.39)	-	NULL
FLJ43860	389690	genome.wustl.edu	37	8	142459701	142459701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207414.2	-1	validated	p.R876C	0.166	59	0%	43	23.3%	0	-	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	superfamily_ARM repeat
C8orf73	642475	genome.wustl.edu	37	8	144650399	144650399	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100878.1	-1	validated	p.H559	0.615	59	0%	94	27.7%	9	33.3%	-	-	-	superfamily_ARM-type_fold
FBXL6	26233	genome.wustl.edu	37	8	145579318	145579318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012162.1	-1	reviewed	p.P498L	0.973	48	0%	76	21.1%	52	34.6%	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	HMMSmart_SM00367,superfamily_RNI-like
CPSF1	29894	genome.wustl.edu	37	8	145619001	145619001	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013291.2	-1	validated	p.D1342	0.434	125	0%	215	25.6%	89	44.9%	-	-	-	HMMPfam_CPSF_A
FOXD4	2298	genome.wustl.edu	37	9	116972	116972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207305.3	-1	validated	p.A383V	0.103	204	0%	234	12%	0	-	possibly_damaging(0.842)	tolerated(0.54)	neutral(0.330)	NULL
DOCK8	81704	genome.wustl.edu	37	9	328086	328086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203447.3	+1	reviewed	p.T252M	0.994	244	0%	93	25.8%	2	0%	probably_damaging(0.973)	tolerated(0.13)	deleterious(0.667)	NULL
CDC37L1	55664	genome.wustl.edu	37	9	4702007	4702007	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017913.2	+1	validated	p.G297	0.656	131	0%	67	25.4%	23	47.8%	-	-	-	superfamily_SSF101391
UHRF2	115426	genome.wustl.edu	37	9	6498151	6498151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152896.1	+1	reviewed	p.R634H	0.862	290	0.3%	102	26.5%	9	33.3%	possibly_damaging(0.938)	tolerated(0.11)	deleterious(0.655)	NULL
PTPRD	5789	genome.wustl.edu	37	9	8485847	8485847	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002839.3	-1	reviewed	p.Y990	0.836	279	0%	113	27.4%	1	100%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FREM1	158326	genome.wustl.edu	37	9	14868942	14868942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144966.5	-1	reviewed	p.V12M	0.011	99	0%	35	20%	2	0%	benign(0.002)	tolerated(0.08)	neutral(0.300)	NULL
DNAJB5	25822	genome.wustl.edu	37	9	34997192	34997192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135005.1	+1	validated	p.R400H	1.000	156	0%	151	30.5%	9	33.3%	benign(0.071)	tolerated(0.16)	neutral(0.065)	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
C9orf128	392307	genome.wustl.edu	37	9	35825358	35825358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012446.2	-1	validated	p.R204H	0.000	197	0%	248	26.2%	0	-	benign(0.007)	tolerated(0.23)	neutral(0.042)	NULL
FBXO10	26267	genome.wustl.edu	37	9	37537464	37537464	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012166.2	-1	validated	p.S354	0.984	81	0%	50	22%	2	0%	-	-	-	HMMSmart_CASH
FXN	2395	genome.wustl.edu	37	9	71679951	71679951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000144.4	+1	reviewed	p.S161I	0.994	292	0%	271	16.6%	30	40%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	HMMPfam_Frataxin_Cyay,superfamily_Frataxin-like
TJP2	9414	genome.wustl.edu	37	9	71836092	71836092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004817.3	+1	reviewed	p.R211H	0.000	10	0%	23	26.1%	7	14.2%	possibly_damaging(0.95)	tolerated(0.1)	deleterious(0.680)	NULL
KIF27	55582	genome.wustl.edu	37	9	86523391	86523391	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017576.1	-1	provisional	p.R159*	1.000	203	0%	91	17.6%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
C9orf64	84267	genome.wustl.edu	37	9	86570359	86570359	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032307.3	-1	validated	p.A178	0.223	44	0%	83	20.5%	6	50%	-	-	-	HMMPfam_DUF2419
NTRK2	4915	genome.wustl.edu	37	9	87285747	87285747	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006180.3	+1	reviewed	p.A28	0.778	181	0.6%	227	28.2%	0	-	-	-	-	superfamily_SSF52058
NXNL2	158046	genome.wustl.edu	37	9	91150414	91150414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145283.2	+1	validated	p.A22E	1.000	49	0%	65	29.2%	17	17.6%	benign(0)	tolerated(1)	-	superfamily_Thiordxn-like_fd
BICD2	23299	genome.wustl.edu	37	9	95477462	95477462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003800.1	-1	reviewed	p.E848K	1.000	54	0%	46	32.6%	1	0%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
PTPDC1	138639	genome.wustl.edu	37	9	96847545	96847545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152422.3	+1	reviewed	p.R84H	0.990	180	0%	132	17.4%	0	-	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	NULL
ZNF462	58499	genome.wustl.edu	37	9	109687834	109687834	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021224.4	+1	validated	p.P547	0.196	258	0%	233	30.5%	3	33.3%	-	-	-	superfamily_beta-sandwich domain of Sec23/24
ACTL7B	10880	genome.wustl.edu	37	9	111617666	111617666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006686.3	-1	reviewed	p.S182L	1.000	39	2.6%	44	27.3%	0	-	benign(0.042)	deleterious(0)	neutral(0.447)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
PALM2-AKAP2	445815	genome.wustl.edu	37	9	112642906	112642906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007203.4	+1	validated	p.R68W	0.994	149	0%	66	28.8%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
COL27A1	85301	genome.wustl.edu	37	9	116930259	116930259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032888.2	+1	validated	p.R142W	1.000	23	0%	40	37.5%	5	20%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
COL27A1	85301	genome.wustl.edu	37	9	117014903	117014903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032888.2	+1	validated	p.V1022M	0.009	170	0%	109	21.1%	4	25%	unknown(0)	tolerated(0.11)	-	NULL
CNTRL	11064	genome.wustl.edu	37	9	123927235	123927235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007018.4	+1	reviewed	p.A1813E	0.984	120	0%	57	36.8%	2	0%	benign(0.014)	tolerated(0.33)	neutral(0.025)	superfamily_tRNA-binding arm
RC3H2	54542	genome.wustl.edu	37	9	125611951	125611951	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100588.1	-1	validated	p.N1177	0.868	160	0%	220	28.2%	7	57.1%	-	-	-	NULL
NEK6	10783	genome.wustl.edu	37	9	127110081	127110081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145001.2	+1	reviewed	p.G305R	0.011	123	0.8%	146	30.8%	65	43%	benign(0.001)	tolerated(0.05)	neutral(0.345)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
GPR144	347088	genome.wustl.edu	37	9	127237853	127237853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000334810	+1	known	p.R909W	0.911	153	0%	200	24.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
OLFML2A	169611	genome.wustl.edu	37	9	127572427	127572427	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182487.2	+1	validated	p.T565	0.876	62	0%	77	28.6%	0	-	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
WDR38	401551	genome.wustl.edu	37	9	127616566	127616566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001045476.1	+1	provisional	p.R51Q	0.038	138	0%	197	23.4%	3	66.6%	benign(0.001)	tolerated(0.58)	neutral(0.005)	superfamily_WD40_like
GARNL3	84253	genome.wustl.edu	37	9	130095371	130095371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032293.4	+1	validated	p.T247M	1.000	152	0%	70	38.6%	0	-	possibly_damaging(0.87)	tolerated(0.08)	deleterious(0.638)	HMMPfam_Rap_GAP,superfamily_Rap/Ran-GAP (Pfam 02145)
SPTAN1	6709	genome.wustl.edu	37	9	131345016	131345016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130438.1	+1	validated	p.R565H	1.000	193	0%	116	23.3%	14	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
DOLPP1	57171	genome.wustl.edu	37	9	131847514	131847514	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020438.4	+1	validated	p.Y97	1.000	259	0%	426	24.2%	12	41.6%	probably_damaging(0.983)	-	-	HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase
CRAT	1384	genome.wustl.edu	37	9	131860346	131860346	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455396	-1	known	p.G69S	0.000	151	0%	146	28.1%	46	45.6%	-	-	-	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
QRFP	347148	genome.wustl.edu	37	9	133768893	133768893	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198180.1	-1	validated	p.P111	0.000	42	0%	52	23.1%	0	-	-	-	-	NULL
NUP214	8021	genome.wustl.edu	37	9	134103662	134103662	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005085.2	+1	reviewed	p.S2006	1.000	126	0%	69	21.7%	35	45.7%	unknown(0)	-	-	NULL
RAPGEF1	2889	genome.wustl.edu	37	9	134471752	134471752	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000414781	-1	known	p.R116W	0.657	200	0.5%	167	36.5%	14	7.1%	-	-	-	HMMSmart_SM00229,superfamily_Ras GEF
VAV2	7410	genome.wustl.edu	37	9	136677304	136677304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134398.1	-1	reviewed	p.V162I	1.000	183	0%	182	25.3%	6	0%	possibly_damaging(0.889)	tolerated(0.23)	neutral(0.391)	superfamily_Calponin-homology domain CH-domain
COL5A1	1289	genome.wustl.edu	37	9	137653806	137653806	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000093.3	+1	reviewed	p.P657	0.377	150	0%	176	26.7%	2	0%	-	-	-	HMMPfam_Collagen
FCN1	2219	genome.wustl.edu	37	9	137804966	137804966	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002003.3	-1	reviewed	p.L122	0.072	113	0%	117	19.7%	0	-	-	-	-	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
KCNT1	57582	genome.wustl.edu	37	9	138642833	138642833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020822.2	+1	validated	p.C127Y	1.000	81	0%	104	26%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SDCCAG3	10807	genome.wustl.edu	37	9	139298566	139298566	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000417512	-1	known	p.T115M	1.000	66	0%	79	15.2%	25	28%	-	-	-	NULL
NOTCH1	4851	genome.wustl.edu	37	9	139395179	139395179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017617.3	-1	reviewed	p.L1920P	1.000	53	0%	94	19.1%	16	6.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
LOC100289474	100289474	genome.wustl.edu	37	9	139399349	139399349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344210.1	+1	model	p.A105T	0.489	34	0%	35	20%	13	38.4%	-	-	-	NULL
COBRA1	25920	genome.wustl.edu	37	9	140166980	140166980	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015456.3	+1	validated	p.H503	0.236	20	0%	40	25%	80	32.5%	-	-	-	HMMPfam_COBRA1
EHMT1	79813	genome.wustl.edu	37	9	140638532	140638532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000460843	+1	known	p.R387H	0.013	109	0%	91	20.9%	18	61.1%	benign(0.003)	tolerated(0.19)	neutral(0.050)	NULL
DIP2C	22982	genome.wustl.edu	37	10	415437	415437	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014974.2	-1	reviewed	p.G710*	1.000	119	0%	111	24.3%	1	0%	-	-	-	superfamily_SSF56801
ADARB2	105	genome.wustl.edu	37	10	1246080	1246080	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018702.2	-1	reviewed	p.V564I	0.218	21	0%	34	29.4%	0	-	benign(0.272)	tolerated(0.13)	neutral(0.282)	HMMPfam_A_deamin,HMMSmart_ADEAMc
MCM10	55388	genome.wustl.edu	37	10	13225033	13225033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182751.2	+1	validated	p.T345M	1.000	146	0.7%	53	32.1%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
SLC39A12	221074	genome.wustl.edu	37	10	18254611	18254611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145195.1	+1	validated	p.R248H	0.499	63	0%	38	34.2%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
ZNF33B	7582	genome.wustl.edu	37	10	43088760	43088760	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006955.1	-1	provisional	p.T546	0.981	271	0%	116	33.6%	4	75%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
HNRNPF	3185	genome.wustl.edu	37	10	43882850	43882850	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098204.1	-1	reviewed	p.S161	0.035	262	0.4%	286	24.5%	176	44.3%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ZNF32	7580	genome.wustl.edu	37	10	44140042	44140042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005368.1	-1	validated	p.T93M	0.877	387	0%	317	27.1%	41	51.2%	probably_damaging(0.98)	tolerated(0.06)	deleterious(0.746)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RBP3	5949	genome.wustl.edu	37	10	48382255	48382255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002900.2	-1	reviewed	p.R1132C	0.999	38	0%	48	20.8%	0	-	possibly_damaging(0.919)	deleterious(0)	deleterious(0.814)	HMMPfam_Peptidase_S41,HMMSmart_SM00245,superfamily_ClpP/crotonase
GDF2	2658	genome.wustl.edu	37	10	48413998	48413998	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016204.1	-1	reviewed	p.D290	0.000	202	0%	199	29.6%	0	-	-	-	-	NULL
VSTM4	196740	genome.wustl.edu	37	10	50315807	50315807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031746.3	-1	validated	p.R97W	0.868	89	0%	96	25%	3	33.3%	probably_damaging(0.968)	deleterious(0.03)	deleterious(0.774)	HMMSmart_SM00409,superfamily_Immunoglobulin
ERCC6	2074	genome.wustl.edu	37	10	50667132	50667132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000124.2	-1	reviewed	p.R1404H	0.988	101	0%	41	19.5%	3	33.3%	probably_damaging(0.988)	deleterious(0.04)	deleterious(0.786)	NULL
CSTF2T	23283	genome.wustl.edu	37	10	53458297	53458297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015235.2	-1	validated	p.R338H	1.000	61	0%	23	17.4%	15	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EGR2	1959	genome.wustl.edu	37	10	64573350	64573350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000399.3	-1	reviewed	p.R350W	1.000	108	0%	184	28.3%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CDH23	64072	genome.wustl.edu	37	10	73468939	73468939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.A1064V	0.998	184	0%	162	53.7%	0	-	possibly_damaging(0.69)	tolerated(0.08)	deleterious(0.547)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73537564	73537564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.Q1658R	1.000	161	0%	149	20.8%	0	-	benign(0.004)	tolerated(1)	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
VCL	7414	genome.wustl.edu	37	10	75874625	75874625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014000.2	+1	reviewed	p.R1076W	0.999	269	0%	101	20.8%	43	20.9%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin
WAPAL	23063	genome.wustl.edu	37	10	88206193	88206193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015045.2	-1	validated	p.R1043Q	1.000	231	0%	165	55.2%	19	73.6%	probably_damaging(0.997)	tolerated(0.23)	deleterious(0.508)	superfamily_ARM repeat
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Nonsense_Mutation	SNP	C	C	T	rs121909224	byCluster	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130*	1.000	256	0%	72	45.8%	6	50%	-	-	-	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
KIF20B	9585	genome.wustl.edu	37	10	91532536	91532536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016195.2	+1	validated	p.R1738Q	1.000	121	0%	30	43.3%	1	100%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TCTN3	26123	genome.wustl.edu	37	10	97447073	97447073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015631.5	-1	validated	p.V223I	0.154	71	0%	46	56.5%	27	88.8%	benign(0.002)	tolerated(0.31)	neutral(0.027)	HMMPfam_DUF1619
ABCC2	1244	genome.wustl.edu	37	10	101563849	101563849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000392.3	+1	reviewed	p.A428D	1.000	345	0%	99	27.3%	0	-	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
CNNM2	54805	genome.wustl.edu	37	10	104836928	104836928	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017649.3	+1	validated	p.G873	0.970	62	0%	47	25.5%	4	75%	-	-	-	NULL
PDCD11	22984	genome.wustl.edu	37	10	105178197	105178197	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014976.1	+1	validated	p.L638	1.000	347	0%	262	52.3%	4	100%	-	-	-	superfamily_Nucleic_acid_OB,HMMSmart_S1
CCDC147	159686	genome.wustl.edu	37	10	106139944	106139944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008723.1	+1	validated	p.R444Q	1.000	92	0%	30	50%	0	-	benign(0.027)	tolerated(0.11)	neutral(0.273)	NULL
SLC18A2	6571	genome.wustl.edu	37	10	119013617	119013617	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003054.4	+1	reviewed	p.I194	0.030	144	0.7%	82	26.8%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
EIF3A	8661	genome.wustl.edu	37	10	120802002	120802002	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003750.2	-1	validated	p.R1010	0.011	410	0.2%	300	49.3%	84	80.9%	-	-	-	NULL
INPP5F	22876	genome.wustl.edu	37	10	121586592	121586592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014937.2	+1	reviewed	p.R900Q	0.944	186	0%	108	57.4%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FGFR2	2263	genome.wustl.edu	37	10	123274794	123274794	+	Missense_Mutation	SNP	T	T	C	rs121913478	byCluster	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.Y376C	1.000	183	0%	102	36.3%	52	100%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
CPXM2	119587	genome.wustl.edu	37	10	125528173	125528174	+	In_Frame_Ins	INS	-	-	CAGCAGCTCCCGGCC	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198148.2	-1	validated	p.389in_frame_insGRELL	1.000:0.929	-	-	-	-	-	-	-	-	-	HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases
MUC6	4588	genome.wustl.edu	37	11	1025271	1025271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005961.2	-1	validated	p.V966M	0.172	54	0%	59	20.3%	1	0%	unknown(0)	deleterious(0.01)	-	HMMPfam_VWD,HMMSmart_SM00216
SYT8	90019	genome.wustl.edu	37	11	1857515	1857515	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138567.3	+1	validated	e5+1	0.978	53	0%	42	19%	0	-	-	-	-	-
OSBPL5	114879	genome.wustl.edu	37	11	3121470	3121470	+	Silent	SNP	C	C	T	rs181441297	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020896.3	-1	reviewed	p.A513	0.813	229	0%	251	27.1%	14	35.7%	-	-	-	HMMPfam_Oxysterol_BP
ENSG00000225101	0	genome.wustl.edu	37	11	4496854	4496854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000416879	+1	known	p.V56I	0.060	119	0%	81	28.4%	1	0%	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR51T1	401665	genome.wustl.edu	37	11	4903353	4903353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004759.1	+1	provisional	p.L102P	0.093	813	0.1%	312	12.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR51A7	119687	genome.wustl.edu	37	11	4929151	4929151	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004749.1	+1	provisional	p.T184	0.807	327	0%	116	11.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TRIM6	117854	genome.wustl.edu	37	11	5632396	5632396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003818.1	+1	reviewed	p.R459C	0.614	273	0.4%	232	19%	1	100%	benign(0.06)	deleterious(0.04)	neutral(0.353)	HMMPfam_SPRY,HMMSmart_SPRY
FAM160A2	84067	genome.wustl.edu	37	11	6232747	6232747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032127.3	-1	validated	p.L984I	1.000	24	0%	25	36%	17	23.5%	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	NULL
TRIM66	9866	genome.wustl.edu	37	11	8662129	8662129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014818.1	-1	validated	p.P453Q	0.997	179	0%	130	15.4%	0	-	possibly_damaging(0.574)	deleterious(0)	deleterious(0.641)	NULL
ST5	6764	genome.wustl.edu	37	11	8734190	8734190	+	Missense_Mutation	SNP	G	G	A	rs75648256		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005418.3	-1	reviewed	p.R694W	1.000	84	0%	129	24.8%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_uDENN,HMMSmart_SM00800
COPB1	1315	genome.wustl.edu	37	11	14486473	14486473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144061.1	-1	reviewed	p.I798M	1.000	260	0%	127	31.5%	77	40.2%	possibly_damaging(0.822)	deleterious(0)	deleterious(0.756)	HMMPfam_Coatamer_beta_C
KCNC1	3746	genome.wustl.edu	37	11	17793787	17793787	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112741.1	+1	reviewed	p.T382	0.990	54	0%	61	31.1%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ANO3	63982	genome.wustl.edu	37	11	26655760	26655760	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031418.2	+1	validated	p.R628P	1.000	162	0%	42	21.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NAT10	55226	genome.wustl.edu	37	11	34133706	34133706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024662.2	+1	validated	p.R103H	1.000	204	0%	88	33%	12	33.3%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
RAG1	5896	genome.wustl.edu	37	11	36597145	36597145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000448.2	+1	reviewed	p.R764H	1.000	121	0%	54	24.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DGKZ	8525	genome.wustl.edu	37	11	46393321	46393321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105540.1	+1	reviewed	p.P464L	1.000	58	0%	95	20%	8	50%	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
MADD	8567	genome.wustl.edu	37	11	47330219	47330219	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003682.3	+1	reviewed	p.S1279	1.000	100	0%	69	23.2%	15	40%	-	-	-	NULL
MADD	8567	genome.wustl.edu	37	11	47345320	47345320	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003682.3	+1	reviewed	p.T1492	1.000	291	0%	179	28.5%	18	38.8%	-	-	-	NULL
PTPRJ	5795	genome.wustl.edu	37	11	48177607	48177607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002843.3	+1	reviewed	p.R1125H	1.000	177	0%	77	14.3%	5	20%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
ENSG00000230416	0	genome.wustl.edu	37	11	56216613	56216613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415874	+1	known	p.T156A	0.001	83	3.6%	32	12.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TNKS1BP1	85456	genome.wustl.edu	37	11	57087670	57087670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033396.2	-1	validated	p.T204M	0.000	90	0%	130	32.3%	28	32.1%	benign(0.235)	tolerated(0.08)	neutral(0.324)	NULL
LPXN	9404	genome.wustl.edu	37	11	58317335	58317335	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143995.1	-1	reviewed	p.V227	1.000	211	0%	59	22%	9	11.1%	-	-	-	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716
MPEG1	219972	genome.wustl.edu	37	11	58979321	58979321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039396.1	-1	validated	p.R340C	0.128	123	0%	71	14.1%	3	0%	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	HMMPfam_MACPF,HMMSmart_MACPF
MS4A12	54860	genome.wustl.edu	37	11	60264857	60264857	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017716.2	+1	reviewed	p.P22	0.002	231	0%	243	19.3%	0	-	-	-	-	NULL
MS4A10	341116	genome.wustl.edu	37	11	60557840	60557840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206893.3	+1	validated	p.R11H	0.000	78	0%	75	20%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
CD6	923	genome.wustl.edu	37	11	60783215	60783215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006725.3	+1	validated	p.P473L	0.144	288	0%	294	21.1%	7	14.2%	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
ENSG00000251217	0	genome.wustl.edu	37	11	60783694	60783694	+	RNA	SNP	T	T	C	rs188849132	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000505761	-1	known	NULL	0.487	3	0.000	6	1.000	0	-	-	-	-	-
VPS37C	55048	genome.wustl.edu	37	11	60901616	60901616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017966.4	-1	validated	p.N53D	1.000	68	0%	67	20.9%	9	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Mod_r
TUT1	64852	genome.wustl.edu	37	11	62342979	62342979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022830.2	-1	reviewed	p.R738W	0.004	78	0%	112	24.1%	18	33.3%	possibly_damaging(0.487)	deleterious(0)	deleterious(0.607)	NULL
TUT1	64852	genome.wustl.edu	37	11	62343264	62343264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022830.2	-1	reviewed	p.R643W	0.016	289	0%	267	16.5%	12	41.6%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
MTA2	9219	genome.wustl.edu	37	11	62362777	62362777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004739.2	-1	reviewed	p.R481Q	0.995	175	0%	199	23.1%	70	20%	possibly_damaging(0.843)	tolerated(0.3)	neutral(0.352)	NULL
NRXN2	9379	genome.wustl.edu	37	11	64434791	64434791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015080.2	-1	reviewed	p.R577W	1.000	76	0%	72	29.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
PYGM	5837	genome.wustl.edu	37	11	64523005	64523005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005609.2	-1	reviewed	p.T229M	0.998	176	0%	228	26.8%	0	-	probably_damaging(0.997)	tolerated(0.14)	deleterious(0.716)	HMMPfam_Phosphorylase,superfamily_SSF53756
CDCA5	113130	genome.wustl.edu	37	11	64847107	64847107	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080668.3	-1	validated	p.D132	0.001	32	0%	46	23.9%	5	20%	-	-	-	HMMPfam_Sororin
MAP3K11	4296	genome.wustl.edu	37	11	65373232	65373232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002419.3	-1	reviewed	p.G611C	1.000	160	0.6%	162	24.1%	22	31.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MUS81	80198	genome.wustl.edu	37	11	65631995	65631995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025128.4	+1	validated	p.R363C	0.007	204	0%	234	19.7%	22	22.7%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_ERCC4,superfamily_Restrict_endonuc_II-like_core
CATSPER1	117144	genome.wustl.edu	37	11	65792903	65792903	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053054.3	-1	reviewed	p.G316	0.000	848	0%	806	19.1%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
PC	5091	genome.wustl.edu	37	11	66616797	66616797	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000920.3	-1	reviewed	p.A1064	0.951	42	0%	62	29%	12	25%	-	-	-	HMMPfam_PYC_OADA
PC	5091	genome.wustl.edu	37	11	66617871	66617871	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000920.3	-1	reviewed	p.A846	0.352	85	0%	145	27.6%	7	28.5%	-	-	-	superfamily_SSF51569
CABP4	57010	genome.wustl.edu	37	11	67223844	67223844	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145200.3	+1	reviewed	p.M158V	1.000	105	0%	119	26.9%	4	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
PITPNM1	9600	genome.wustl.edu	37	11	67261262	67261262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004910.2	-1	validated	p.G1019S	1.000	24	0%	26	26.9%	37	40.5%	probably_damaging(0.99)	tolerated(0.59)	neutral(0.446)	superfamily_HAD-like
MRGPRD	116512	genome.wustl.edu	37	11	68748046	68748046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198923.2	-1	validated	p.R137Q	0.015	111	0%	116	28.4%	0	-	benign(0.295)	deleterious(0.04)	neutral(0.441)	HMMPfam_7tm_1,superfamily_SSF81321
NUMA1	4926	genome.wustl.edu	37	11	71726933	71726933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006185.2	-1	validated	p.L539P	0.015	193	0.5%	186	27.4%	33	45.4%	probably_damaging(0.983)	tolerated(0.07)	deleterious(0.748)	NULL
LRTOMT	220074	genome.wustl.edu	37	11	71800165	71800165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145309.2	+1	validated	p.Q12H	1.000	222	0%	131	20.6%	24	29.1%	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	NULL
INPPL1	3636	genome.wustl.edu	37	11	71946494	71946494	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001567.3	+1	reviewed	p.Y886	0.995	49	0%	90	16.7%	43	9.3%	-	-	-	NULL
SERPINH1	871	genome.wustl.edu	37	11	75277692	75277692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001235.2	+1	reviewed	p.E100K	0.977	18	5.6%	23	39.1%	115	32.1%	benign(0.001)	tolerated(0.15)	neutral(0.241)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
CAPN5	726	genome.wustl.edu	37	11	76832988	76832988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004055.4	+1	reviewed	p.R499H	0.965	68	0%	66	30.3%	34	47%	benign(0.048)	tolerated(0.58)	neutral(0.008)	superfamily_Peptidase_C2,superfamily_C2_CaLB
MYO7A	4647	genome.wustl.edu	37	11	76885835	76885835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000260.3	+1	reviewed	p.R657W	0.998	111	0%	121	26.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
GDPD4	220032	genome.wustl.edu	37	11	76944177	76944177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182833.1	-1	provisional	p.V428I	0.006	205	0%	64	29.7%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	HMMPfam_GDPD,superfamily_PLC-like_Pdiesterase_TIM-brl
C11orf67	28971	genome.wustl.edu	37	11	77583260	77583260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024684.2	+1	predicted	p.I90V	1.000	265	0%	116	11.2%	42	14.2%	benign(0)	tolerated(0.57)	neutral(0.006)	HMMPfam_DUF498,superfamily_Hypothetical protein MT938 (MTH938)
ODZ4	26011	genome.wustl.edu	37	11	78614398	78614398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098816.2	-1	validated	p.G222R	0.976	32	0%	40	15%	0	-	probably_damaging(0.976)	tolerated(0.17)	deleterious(0.477)	HMMPfam_Ten_N
TMEM135	65084	genome.wustl.edu	37	11	87020588	87020588	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022918.3	+1	validated	p.C270	1.000	101	0%	38	15.8%	4	25%	-	-	-	NULL
NAALAD2	10003	genome.wustl.edu	37	11	89896526	89896526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005467.3	+1	reviewed	p.A375D	0.857	110	0%	150	31.3%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Peptidase_M28,superfamily_Zn-dependent exopeptidases
ENDOD1	23052	genome.wustl.edu	37	11	94861564	94861564	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015036.2	+1	validated	p.L108	0.001	108	0%	62	17.7%	3	0%	-	-	-	HMMPfam_Endonuclease_NS,HMMSmart_NUC,superfamily_SSF54060
PIH1D2	120379	genome.wustl.edu	37	11	111943844	111943844	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138789.3	-1	validated	p.L19	0.997	238	0%	143	16.1%	4	0%	-	-	-	HMMPfam_PIH1
BCO2	83875	genome.wustl.edu	37	11	112064224	112064224	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031938.4	+1	validated	p.A107	0.396	247	0%	109	22%	1	0%	unknown(0)	-	-	HMMPfam_RPE65
ZW10	9183	genome.wustl.edu	37	11	113614598	113614598	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004724.2	-1	reviewed	p.I479	1.000	285	0%	136	34.6%	9	33.3%	-	-	-	HMMPfam_Zw10
DSCAML1	57453	genome.wustl.edu	37	11	117387201	117387201	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020693.2	-1	provisional	p.S648	0.404	135	0%	114	28.9%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
VPS11	55823	genome.wustl.edu	37	11	118949009	118949009	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000300793	+1	known	p.R629*	0.424	83	0%	107	22.4%	19	0%	-	-	-	NULL
CBL	867	genome.wustl.edu	37	11	119155972	119155972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005188.2	+1	reviewed	p.P546L	1.000	229	0%	137	27.7%	1	0%	probably_damaging(0.999)	tolerated(0.21)	deleterious(0.534)	NULL
POU2F3	25833	genome.wustl.edu	37	11	120170334	120170334	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014352.2	+1	validated	p.D87G	1.000	201	0%	73	24.7%	0	-	benign(0.07)	deleterious(0)	neutral(0.450)	NULL
TECTA	7007	genome.wustl.edu	37	11	120998718	120998718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005422.2	+1	reviewed	p.E678K	1.000	84	0%	81	19.8%	0	-	benign(0.158)	tolerated(0.38)	neutral(0.032)	HMMSmart_SM00215
VWA5A	4013	genome.wustl.edu	37	11	124012409	124012409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130142.1	+1	validated	p.L662I	0.000	324	0%	134	21.6%	45	71.1%	benign(0.03)	tolerated(0.2)	neutral(0.051)	NULL
OR8D2	283160	genome.wustl.edu	37	11	124189609	124189609	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002918.1	-1	provisional	p.R162H	0.001	109	0%	47	29.8%	0	-	benign(0.001)	tolerated(0.18)	neutral(0.056)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FLI1	2313	genome.wustl.edu	37	11	128680830	128680830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002017.3	+1	validated	p.V436I	0.999	258	0%	157	26.1%	9	0%	possibly_damaging(0.893)	tolerated(0.24)	neutral(0.389)	NULL
KCNJ5	3762	genome.wustl.edu	37	11	128781427	128781427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000890.3	+1	reviewed	p.R87C	1.000	227	0%	212	25.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IRK,superfamily_SSF81324
ARHGAP32	9743	genome.wustl.edu	37	11	128844224	128844224	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142685.1	-1	validated	p.C942	0.000	574	0%	291	24.4%	1	100%	-	-	-	NULL
GLB1L3	112937	genome.wustl.edu	37	11	134182366	134182366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080407.2	+1	validated	p.A471T	0.001	53	0%	44	25%	0	-	benign(0.124)	deleterious(0.01)	neutral(0.416)	NULL
WNK1	65125	genome.wustl.edu	37	12	922855	922855	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018979.3	+1	reviewed	p.A269	0.998	169	0%	95	30.5%	4	25%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
FBXL14	144699	genome.wustl.edu	37	12	1702232	1702232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152441.2	-1	validated	p.T334M	1.000	159	0%	190	23.7%	13	53.8%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	superfamily_SSF52047
CACNA1C	775	genome.wustl.edu	37	12	2224680	2224680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199460.2	+1	reviewed	p.R114W	1.000	24	0%	31	29%	1	0%	probably_damaging(0.966)	deleterious(0)	deleterious(0.853)	superfamily_Voltage-gated potassium channels
FOXM1	2305	genome.wustl.edu	37	12	2968422	2968422	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_202002.1	-1	validated	p.P596	0.010	36	2.8%	45	28.9%	15	33.3%	-	-	-	NULL
TEAD4	7004	genome.wustl.edu	37	12	3103999	3103999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003213.2	+1	reviewed	p.T23A	0.989	61	0%	68	20.6%	10	40%	benign(0)	tolerated(0.86)	neutral(0.001)	HMMPfam_TEA
C12orf4	57102	genome.wustl.edu	37	12	4609376	4609376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020374.2	-1	predicted	p.I456M	0.958	179	0%	52	19.2%	8	25%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_DUF2362
KCNA5	3741	genome.wustl.edu	37	12	5154556	5154556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002234.2	+1	reviewed	p.R415C	1.000	223	0%	306	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
GAPDH	2597	genome.wustl.edu	37	12	6646132	6646132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002046.3	+1	reviewed	p.V95I	1.000	143	0%	207	18.8%	3323	43.8%	benign(0.006)	tolerated(0.19)	neutral(0.050)	HMMPfam_Gp_dh_N,superfamily_NAD(P)-binding Rossmann-fold domains
CD163	9332	genome.wustl.edu	37	12	7635247	7635247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004244.4	-1	validated	p.R1080Q	0.000	200	0%	74	25.7%	16	0%	possibly_damaging(0.778)	tolerated(0.19)	neutral(0.340)	NULL
FOXJ2	55810	genome.wustl.edu	37	12	8200767	8200767	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018416.2	+1	validated	p.P369	0.399	76	0%	73	28.8%	7	42.8%	-	-	-	NULL
MFAP5	8076	genome.wustl.edu	37	12	8803161	8803161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003480.2	-1	reviewed	p.C91Y	0.999	207	0%	107	27.1%	16	12.5%	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	HMMPfam_MAGP
KLRG1	10219	genome.wustl.edu	37	12	9147869	9147869	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005810.3	+1	reviewed	p.T114	0.000	130	0%	29	17.2%	1	0%	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
KLRC4	8302	genome.wustl.edu	37	12	10562004	10562004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013431.2	-1	reviewed	p.K57N	0.001	472	0%	205	29.3%	4	0%	probably_damaging(0.966)	tolerated(0.05)	deleterious(0.753)	NULL
WBP11	51729	genome.wustl.edu	37	12	14953706	14953706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016312.2	-1	reviewed	p.R26W	1.000	49	0%	80	23.7%	23	30.4%	benign(0.071)	deleterious(0.04)	neutral(0.354)	HMMPfam_Wbp11
PLCZ1	89869	genome.wustl.edu	37	12	18841041	18841041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033123.2	-1	provisional	p.R525C	0.990	68	0%	31	19.4%	0	-	benign(0.128)	deleterious(0.04)	neutral(0.359)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PDE3A	5139	genome.wustl.edu	37	12	20833200	20833200	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000921.3	+1	validated	p.Q1141*	1.000	59	0%	32	15.6%	2	0%	-	-	-	NULL
CAPRIN2	65981	genome.wustl.edu	37	12	30862860	30862860	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002259.1	-1	validated	p.S1120	0.953	123	0%	69	26.1%	5	20%	-	-	-	HMMPfam_C1q,HMMSmart_SM00110,superfamily_TNF-like
H3F3C	440093	genome.wustl.edu	37	12	31944715	31944715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013699.2	-1	validated	p.R129Q	1.000	346	0.3%	327	28.4%	191	0%	benign(0.024)	-	-	HMMSmart_H3,HMMPfam_Histone,superfamily_Histone-fold
RAPGEF3	10411	genome.wustl.edu	37	12	48143757	48143757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098531.2	-1	validated	p.A258V	1.000	507	0.2%	380	22.6%	7	28.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00100,superfamily_cAMP-binding domain-like
ENSG00000135477	0	genome.wustl.edu	37	12	52652058	52652058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000257935	-1	known	p.T94A	0.955	307	0%	342	27.5%	0	-	-	-	-	NULL
KRT72	140807	genome.wustl.edu	37	12	52985319	52985319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080747.2	-1	reviewed	p.E298K	0.995	478	0%	395	26.6%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMPfam_Filament
PCBP2	5094	genome.wustl.edu	37	12	53865487	53865487	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005016.5	+1	reviewed	p.A320	1.000	101	0%	63	33.3%	485	23.7%	-	-	-	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
PHC1P1	653441	genome.wustl.edu	37	12	55806411	55806411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000326184	-1	known	p.A704T	0.075	154	0%	177	27.7%	1	0%	-	-	-	NULL
LOC100288280	100288280	genome.wustl.edu	37	12	55808279	55808279	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343188.1	+1	model	p.L34V	1.000	261	0%	304	19.4%	6	0%	-	-	-	NULL
DNAJC14	85406	genome.wustl.edu	37	12	56221316	56221316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032364.5	-1	validated	p.R376H	0.008	88	0%	126	24.6%	11	27.2%	benign(0.008)	tolerated(0.4)	neutral(0.016)	NULL
PAN2	9924	genome.wustl.edu	37	12	56716264	56716264	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127460.2	-1	reviewed	p.G884	0.015	86	0%	87	31%	14	57.1%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
GLS2	27165	genome.wustl.edu	37	12	56867031	56867031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013267.2	-1	reviewed	p.R477H	1.000	238	0%	237	21.1%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Ankyrin repeat
MARS	4141	genome.wustl.edu	37	12	57910095	57910095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004990.2	+1	reviewed	p.A844V	0.020	170	0.6%	229	19.7%	82	28%	benign(0)	tolerated(0.28)	neutral(0.032)	superfamily_S15/NS1_bind
KIF5A	3798	genome.wustl.edu	37	12	57960921	57960921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004984.2	+1	reviewed	p.R172C	1.000	232	0%	150	22%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
AGAP2	116986	genome.wustl.edu	37	12	58125358	58125358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122772.1	-1	validated	p.R674Q	1.000	168	0%	309	26.5%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PH domain-like
CCT2	10576	genome.wustl.edu	37	12	69991840	69991840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006431.2	+1	reviewed	p.A442S	1.000	104	1%	32	21.9%	139	28%	benign(0.283)	deleterious(0.03)	neutral(0.452)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
RAB3IP	117177	genome.wustl.edu	37	12	70149204	70149204	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175623.2	+1	validated	p.L22	1.000	172	0%	216	20.4%	11	45.4%	-	-	-	NULL
CAPS2	84698	genome.wustl.edu	37	12	75692739	75692739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032606.3	-1	validated	p.R307C	1.000	118	0%	125	24.8%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ZDHHC17	23390	genome.wustl.edu	37	12	77208972	77208972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015336.2	+1	validated	p.A197V	1.000	92	0%	30	13.3%	1	0%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
PPFIA2	8499	genome.wustl.edu	37	12	81732959	81732959	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003625.2	-1	reviewed	p.R850*	1.000	210	0%	80	26.3%	0	-	-	-	-	NULL
CEP290	80184	genome.wustl.edu	37	12	88456492	88456492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025114.3	-1	reviewed	p.R2112W	0.751	291	0%	100	30%	6	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KERA	11081	genome.wustl.edu	37	12	91449558	91449558	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007035.3	-1	reviewed	p.N167	0.995	49	0%	36	13.9%	0	-	-	-	-	HMMPfam_LRR_1,superfamily_SSF52058
EEA1	8411	genome.wustl.edu	37	12	93244955	93244955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003566.3	-1	validated	p.R244C	1.000	172	0%	68	26.5%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
VEZT	55591	genome.wustl.edu	37	12	95676321	95676321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017599.3	+1	validated	p.P410L	0.156	220	0%	81	12.3%	21	14.2%	probably_damaging(0.98)	tolerated(0.34)	neutral(0.447)	NULL
AMDHD1	144193	genome.wustl.edu	37	12	96354191	96354191	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152435.2	+1	validated	p.T201	0.003	163	0%	200	18.5%	0	-	-	-	-	superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
UHRF1BP1L	23074	genome.wustl.edu	37	12	100452770	100452770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015054.1	-1	validated	p.R762Q	1.000	90	1.1%	73	37%	4	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PARPBP	55010	genome.wustl.edu	37	12	102542066	102542066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000417507	+1	known	p.L71P	0.927	77	0%	69	23.2%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RIC8B	55188	genome.wustl.edu	37	12	107219523	107219523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018157.2	+1	validated	p.R254H	1.000	509	0%	175	20.6%	3	0%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	superfamily_ARM-type_fold,HMMPfam_Ric8
BTBD11	121551	genome.wustl.edu	37	12	107914351	107914351	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018072.1	+1	validated	p.S408L	0.997	150	0%	43	30.2%	2	0%	benign(0.139)	tolerated(0.39)	neutral(0.028)	NULL
ACACB	32	genome.wustl.edu	37	12	109647014	109647014	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001093.3	+1	reviewed	p.P1035	0.014	47	0%	22	22.7%	0	-	-	-	-	HMMPfam_ACC_central
CUX2	23316	genome.wustl.edu	37	12	111785522	111785522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015267.3	+1	validated	p.S1285N	0.000	59	0%	62	17.7%	0	-	benign(0.014)	tolerated(0.42)	neutral(0.015)	NULL
TRAFD1	10906	genome.wustl.edu	37	12	112589815	112589815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143906.1	+1	validated	p.R497Q	0.000	105	0%	96	20.8%	44	22.7%	benign(0.021)	tolerated(0.12)	neutral(0.262)	NULL
SLC24A6	80024	genome.wustl.edu	37	12	113754448	113754448	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024959.2	-1	validated	p.R292	1.000	130	0%	149	24.8%	8	25%	-	-	-	NULL
TBX3	6926	genome.wustl.edu	37	12	115109852	115109852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016569.3	-1	reviewed	p.A676T	0.978	29	0%	33	24.2%	2	0%	benign(0.004)	tolerated(0.34)	neutral(0.023)	NULL
MED13L	23389	genome.wustl.edu	37	12	116434448	116434448	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015335.3	-1	validated	p.P943	1.000	123	0%	47	40.4%	5	60%	-	-	-	NULL
NOS1	4842	genome.wustl.edu	37	12	117655919	117655919	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000620.2	-1	reviewed	p.Y1407	0.916	340	0%	194	22.7%	0	-	-	-	-	NULL
CCDC64	92558	genome.wustl.edu	37	12	120499537	120499537	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207311.2	+1	validated	p.L223	1.000	107	0%	44	18.2%	1	100%	-	-	-	NULL
GCN1L1	10985	genome.wustl.edu	37	12	120587780	120587780	+	Silent	SNP	G	G	A	rs145122247	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006836.1	-1	validated	p.H1459	0.138	107	0%	94	11.7%	15	26.6%	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
SETD1B	23067	genome.wustl.edu	37	12	122252765	122252765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015048.1	+1	validated	p.R882C	1.000	118	0%	148	26.4%	6	50%	probably_damaging(0.997)	-	-	NULL
HIP1R	9026	genome.wustl.edu	37	12	123343685	123343685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003959.1	+1	validated	p.R746W	0.006	16	0%	34	26.5%	20	5%	possibly_damaging(0.846)	deleterious(0.02)	deleterious(0.708)	NULL
NCOR2	9612	genome.wustl.edu	37	12	124835278	124835278	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006312.3	-1	validated	p.T1240	0.009	116	0%	144	33.3%	24	54.1%	-	-	-	NULL
FZD10	11211	genome.wustl.edu	37	12	130648122	130648122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007197.2	+1	reviewed	p.T212M	0.982	63	0%	101	32.7%	4	0%	possibly_damaging(0.643)	tolerated(0.12)	deleterious(0.486)	NULL
EP400	57634	genome.wustl.edu	37	12	132490746	132490746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.E1008K	0.994	115	0%	45	33.3%	1	0%	unknown(0)	-	-	superfamily_SSF52540
POLE	5426	genome.wustl.edu	37	12	133218274	133218274	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.P1779	0.000	166	0%	135	28.9%	6	50%	-	-	-	HMMPfam_DUF1744
POLE	5426	genome.wustl.edu	37	12	133256789	133256789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.P102L	1.000	72	0%	107	18.7%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B_exo,superfamily_RNaseH_fold
POLE	5426	genome.wustl.edu	37	12	133257828	133257828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006231.2	-1	validated	p.R34C	1.000	168	0%	137	24.1%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CHFR	55743	genome.wustl.edu	37	12	133438137	133438137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018223.2	-1	validated	p.P194T	0.002	320	0%	469	27.7%	11	27.2%	benign(0.155)	tolerated(0.22)	neutral(0.056)	NULL
GJA3	2700	genome.wustl.edu	37	13	20717168	20717168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021954.3	-1	reviewed	p.T87M	1.000	326	0%	452	29.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Connexin
C1QTNF9B	387911	genome.wustl.edu	37	13	24470987	24470987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007537.1	-1	provisional	p.G47R	1.000	731	0%	696	18.1%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Collagen
PARP4	143	genome.wustl.edu	37	13	25075781	25075781	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006437.3	-1	reviewed	p.A108	0.000	215	0%	240	22.5%	13	30.7%	-	-	-	NULL
RPL21	6144	genome.wustl.edu	37	13	27830466	27830466	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000982.3	+1	reviewed	p.R130C	1.000	70	0%	115	10.4%	154	4.5%	benign(0.02)	deleterious(0.03)	neutral(0.365)	NULL
SLC46A3	283537	genome.wustl.edu	37	13	29291951	29291951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135919.1	-1	validated	p.Q62R	0.979	92	0%	143	27.3%	0	-	benign(0.057)	tolerated(0.17)	neutral(0.062)	HMMPfam_MFS_1
BRCA2	675	genome.wustl.edu	37	13	32911968	32911968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000059.3	+1	reviewed	p.C1159Y	0.003	139	0%	50	20%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
SOHLH2	54937	genome.wustl.edu	37	13	36743177	36743177	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017826.2	-1	validated	p.A424	1.000	240	0%	108	21.3%	0	-	-	-	-	NULL
FREM2	341640	genome.wustl.edu	37	13	39265791	39265791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207361.4	+1	reviewed	p.V1437A	1.000	210	0%	129	20.9%	0	-	possibly_damaging(0.839)	tolerated(0.17)	neutral(0.380)	NULL
ENSG00000170919	0	genome.wustl.edu	37	13	45965250	45965250	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000330825	+1	known	p.S37	1.000	129	0%	159	25.2%	7	85.7%	-	-	-	NULL
ENSG00000170919	0	genome.wustl.edu	37	13	45965346	45965346	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000330825	+1	known	p.S69	1.000	38	0%	71	29.6%	32	9.3%	-	-	-	NULL
LOC731932	731932	genome.wustl.edu	37	13	47033290	47033290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001716667.2	-1	model	p.G87S	0.067	314	0%	344	19.2%	0	-	-	-	-	NULL
RB1	5925	genome.wustl.edu	37	13	49030385	49030385	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000321.2	+1	reviewed	p.T620	0.620	126	0%	197	25.9%	15	40%	-	-	-	NULL
WDFY2	115825	genome.wustl.edu	37	13	52234781	52234781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052950.3	+1	reviewed	p.V63I	1.000	242	0.4%	86	30.2%	4	50%	benign(0)	tolerated(1)	-	superfamily_WD40 repeat-like
VPS36	51028	genome.wustl.edu	37	13	52997740	52997740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016075.2	-1	validated	p.Y270C	1.000	132	0%	123	29.3%	22	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_EAP30,superfamily_""Winged helix"" DNA-binding domain"
VPS36	51028	genome.wustl.edu	37	13	53000126	53000126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016075.2	-1	validated	p.T239A	1.000	275	0%	219	19.2%	15	13.3%	benign(0.025)	tolerated(0.42)	neutral(0.015)	"HMMPfam_EAP30,superfamily_""Winged helix"" DNA-binding domain"
CLN5	1203	genome.wustl.edu	37	13	77569200	77569200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006493.2	+1	reviewed	p.R108H	1.000	169	0%	226	11.1%	19	10.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTMAP5	150928	genome.wustl.edu	37	13	82264218	82264218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000393073	+1	known	p.V6I	0.800	34	0%	59	25.4%	42	0%	-	-	-	HMMPfam_Prothymosin
CLDN10	9071	genome.wustl.edu	37	13	96205086	96205086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006984.4	+1	reviewed	p.T27A	1.000	70	0%	58	22.4%	0	-	possibly_damaging(0.792)	tolerated(0.11)	deleterious(0.569)	HMMPfam_PMP22_Claudin
PCCA	5095	genome.wustl.edu	37	13	100953817	100953817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000282.3	+1	reviewed	p.R390H	1.000	297	0.3%	86	26.7%	22	50%	benign(0.004)	deleterious(0.02)	neutral(0.383)	HMMPfam_CPSase_L_D2,superfamily_SSF56059
TPP2	7174	genome.wustl.edu	37	13	103295702	103295702	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003291.2	+1	reviewed	p.T717	0.082	177	0%	46	23.9%	9	33.3%	-	-	-	NULL
MYO16	23026	genome.wustl.edu	37	13	109792735	109792735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015011.1	+1	validated	p.R1370Q	0.664	6	0.000	17	0.294	0	-	benign(0.08)	deleterious(0)	neutral(0.450)	NULL
MCF2L	23263	genome.wustl.edu	37	13	113719395	113719395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112732.1	+1	validated	p.A308V	1.000	71	0%	84	25%	20	50%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
TFDP1	7027	genome.wustl.edu	37	13	114288232	114288232	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007111.4	+1	reviewed	p.R168C	1.000	165	0%	231	29.9%	40	57.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E2F_TDP,superfamily_SSF46785
ARHGEF40	55701	genome.wustl.edu	37	14	21549722	21549722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018071.3	+1	validated	p.R899W	0.659	22	0%	37	40.5%	3	66.6%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
CHD8	57680	genome.wustl.edu	37	14	21863126	21863126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020920.3	-1	reviewed	p.R1500C	0.998	52	0%	43	37.2%	21	47.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_P-loop containing nucleoside triphosphate hydrolases
TOX4	9878	genome.wustl.edu	37	14	21961062	21961062	+	Silent	SNP	T	T	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014828.2	+1	validated	p.A429	0.939	50	0%	44	20.5%	29	44.8%	-	-	-	NULL
METTL3	56339	genome.wustl.edu	37	14	21967277	21967277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019852.3	-1	reviewed	p.R508H	1.000	214	0%	149	27.5%	43	39.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MT-A70
SALL2	6297	genome.wustl.edu	37	14	21992981	21992981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005407.1	-1	validated	p.R294Q	1.000	63	1.6%	101	28.7%	0	-	possibly_damaging(0.532)	tolerated(0.59)	neutral(0.184)	NULL
LRP10	26020	genome.wustl.edu	37	14	23345196	23345196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014045.3	+1	validated	p.G347S	1.000	61	0%	104	16.3%	78	14.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00192,superfamily_LDL receptor-like module
RBM23	55147	genome.wustl.edu	37	14	23375466	23375466	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077351.1	-1	reviewed	p.S113	0.993	130	0%	89	32.6%	33	45.4%	-	-	-	NULL
HAUS4	54930	genome.wustl.edu	37	14	23421814	23421816	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017815.2	-1	reviewed	p.L45in_frame_del	0.977:0.983:0.980	-	-	-	-	-	-	-	-	-	NULL
PSMB5	5693	genome.wustl.edu	37	14	23502644	23502644	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002797.3	-1	reviewed	p.V146	0.998	158	0%	110	29.1%	168	36.3%	-	-	-	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
MYH7	4625	genome.wustl.edu	37	14	23883051	23883051	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.L1903	1.000	325	0%	363	25.6%	0	-	-	-	-	HMMPfam_Myosin_tail_1
DHRS4L1	728635	genome.wustl.edu	37	14	24517919	24517919	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082488.1	+1	provisional	p.L192V	1.000	380	0%	463	19.7%	0	-	possibly_damaging(0.589)	tolerated(0.07)	deleterious(0.522)	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-binding Rossmann-fold domains
CPNE6	9362	genome.wustl.edu	37	14	24543509	24543509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006032.2	+1	reviewed	p.E145K	0.998	178	0%	213	15.5%	0	-	possibly_damaging(0.943)	deleterious(0.01)	deleterious(0.793)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
NYNRIN	57523	genome.wustl.edu	37	14	24885655	24885655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025081.2	+1	validated	p.R1567H	0.283	92	0%	116	29.3%	2	50%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ARHGAP5	394	genome.wustl.edu	37	14	32623873	32623873	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001030055.1	+1	reviewed	p.S1410T	1.000	237	0%	80	21.2%	27	51.8%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
FAM179B	23116	genome.wustl.edu	37	14	45431843	45431843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015091.2	+1	validated	p.M73I	0.999	62	0%	44	34.1%	1	100%	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
FAM179B	23116	genome.wustl.edu	37	14	45431916	45431916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015091.2	+1	validated	p.R98W	0.990	38	0%	25	16%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NID2	22795	genome.wustl.edu	37	14	52534849	52534849	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007361.3	-1	validated	p.D87	1.000	110	0%	118	39%	0	-	-	-	-	NULL
DDHD1	80821	genome.wustl.edu	37	14	53529719	53529719	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030637.2	-1	validated	p.R570*	0.024	221	0%	110	16.4%	6	16.6%	-	-	-	NULL
MUDENG	55745	genome.wustl.edu	37	14	57753034	57753034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018229.3	+1	validated	p.A463T	0.998	215	0%	47	23.4%	13	46.1%	benign(0)	tolerated(1)	-	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
C14orf37	145407	genome.wustl.edu	37	14	58605328	58605328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001872.2	-1	predicted	p.L250P	0.001	179	0%	117	23.9%	2	50%	benign(0.002)	deleterious(0.01)	neutral(0.406)	NULL
SYT16	83851	genome.wustl.edu	37	14	62547763	62547763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031914.2	+1	validated	p.G402D	1.000	103	0%	41	29.3%	0	-	possibly_damaging(0.952)	tolerated(0.2)	neutral(0.445)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
SPTB	6710	genome.wustl.edu	37	14	65260207	65260207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024858.2	-1	reviewed	p.W725L	1.000	96	0%	61	23%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
ZFYVE26	23503	genome.wustl.edu	37	14	68250089	68250089	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015346.3	-1	reviewed	p.H1260	0.079	144	0%	55	27.3%	2	0%	-	-	-	NULL
C14orf162	56936	genome.wustl.edu	37	14	70037336	70037336	+	RNA	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024630.1	-1	validated	NULL	0.997	18	0%	51	27.5%	0	-	-	-	-	-
SMOC1	64093	genome.wustl.edu	37	14	70442476	70442476	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034852.1	+1	validated	p.P141	0.056	345	0%	110	19.1%	1	100%	-	-	-	HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain
FAM161B	145483	genome.wustl.edu	37	14	74411430	74411430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152445.1	-1	predicted	p.T178M	0.966	49	0%	46	34.8%	1	0%	benign(0.297)	tolerated(0.12)	neutral(0.353)	HMMPfam_UPF0564
VRTN	55237	genome.wustl.edu	37	14	74824284	74824284	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018228.2	+1	validated	p.S266	0.004	58	0%	66	22.7%	0	-	-	-	-	NULL
BATF	10538	genome.wustl.edu	37	14	76012811	76012811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006399.3	+1	reviewed	p.E59K	1.000	40	0%	35	31.4%	32	18.7%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMSmart_BRLZ,HMMPfam_bZIP_1
C14orf118	55668	genome.wustl.edu	37	14	76644343	76644343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000336993	+1	known	p.R354H	0.513	379	0%	247	27.5%	3	33.3%	-	-	-	NULL
KIAA1737	85457	genome.wustl.edu	37	14	77580238	77580238	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033426.2	+1	validated	p.F259	0.014	105	0%	67	23.9%	5	60%	-	-	-	NULL
GSTZ1	2954	genome.wustl.edu	37	14	77791255	77791255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145870.2	+1	reviewed	p.V20I	1.000	214	0%	219	18.3%	31	25.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_GST_N,superfamily_Thioredoxin-like
GPR65	8477	genome.wustl.edu	37	14	88478073	88478073	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003608.3	+1	validated	p.T294	0.958	221	0.5%	61	19.7%	8	0%	-	-	-	superfamily_Family A G protein-coupled receptor-like
BTBD7	55727	genome.wustl.edu	37	14	93712231	93712231	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002860.2	-1	validated	p.A841	0.003	76	0%	54	25.9%	2	0%	-	-	-	NULL
BTBD7	55727	genome.wustl.edu	37	14	93720031	93720031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002860.2	-1	validated	p.R572C	1.000	216	0%	58	31%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DDX24	57062	genome.wustl.edu	37	14	94528486	94528486	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020414.3	-1	reviewed	p.A400	0.163	148	0%	67	16.4%	50	44%	-	-	-	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
DICER1	23405	genome.wustl.edu	37	14	95599702	95599702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030621.3	-1	reviewed	p.W32R	1.000	215	0%	85	20%	5	40%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
AK7	122481	genome.wustl.edu	37	14	96944832	96944832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152327.2	+1	validated	p.E529G	1.000	187	0%	106	19.8%	2	50%	benign(0.362)	deleterious(0.01)	deleterious(0.521)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SETD3	84193	genome.wustl.edu	37	14	99865430	99865430	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032233.2	-1	validated	p.L457	0.666	123	0%	99	17.2%	34	50%	-	-	-	HMMPfam_Rubis-subs-bind,superfamily_RuBisCo LSMT C-terminal substrate-binding domain
EML1	2009	genome.wustl.edu	37	14	100406438	100406438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008707.1	+1	reviewed	p.R832C	1.000	180	0.6%	180	25%	5	20%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
RTL1	388015	genome.wustl.edu	37	14	101351019	101351019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134888.2	-1	reviewed	p.T36M	0.000	51	0%	81	27.2%	0	-	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	NULL
KIF26A	26153	genome.wustl.edu	37	14	104642378	104642378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015656.1	+1	validated	p.A1085T	0.999	4	0.000	11	0.364	1	0%	possibly_damaging(0.915)	deleterious(0.01)	deleterious(0.772)	NULL
PLD4	122618	genome.wustl.edu	37	14	105398157	105398157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138790.2	+1	validated	p.A331T	0.994	41	0%	67	34.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PLD_envelope,superfamily_SSF56024
AHNAK2	113146	genome.wustl.edu	37	14	105407883	105407883	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.T4635	0.003	77	0%	117	26.5%	0	-	-	-	-	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105411137	105411137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.G3551S	0.000	147	0%	329	26.1%	0	-	possibly_damaging(0.864)	tolerated(0.37)	neutral(0.354)	NULL
TMEM121	80757	genome.wustl.edu	37	14	105995779	105995779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025268.2	+1	provisional	p.S203N	1.000	30	0%	48	37.5%	2	0%	benign(0.039)	deleterious(0)	neutral(0.447)	NULL
IGHE	3497	genome.wustl.edu	37	14	106066698	106066698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390541	-1	known	p.T331M	0.006	22	0%	40	20%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_C1-set,superfamily_SSF48726
IGHA1	3493	genome.wustl.edu	37	14	106174745	106174745	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390547	-1	known	p.H86	0.000	203	0%	251	21.5%	6071	0%	-	-	-	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
NIPA2	81614	genome.wustl.edu	37	15	23006736	23006736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008860.2	-1	reviewed	p.A190T	1.000	89	0%	76	19.7%	32	43.7%	possibly_damaging(0.53)	deleterious(0)	deleterious(0.623)	HMMPfam_DUF803
C15orf2	23742	genome.wustl.edu	37	15	24922694	24922694	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018958.2	+1	reviewed	p.N560	0.000	354	0%	333	24.9%	0	-	-	-	-	NULL
HERC2	8924	genome.wustl.edu	37	15	28459326	28459326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.R2151C	0.996	48	0%	94	19.1%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HERC2	8924	genome.wustl.edu	37	15	28483809	28483809	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.D1229	0.881	276	0%	130	21.5%	1	0%	-	-	-	HMMPfam_Cyt-b5,superfamily_Cytochrome b5-like heme/steroid binding domain
LOC728310	728310	genome.wustl.edu	37	15	29092258	29092258	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078490.1	-1	model	NULL	0.060	39	0%	126	23%	0	-	-	-	-	-
FMN1	342184	genome.wustl.edu	37	15	33359032	33359032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001103184.2	-1	validated	p.D352N	1.000	143	0%	65	23.1%	2	0%	unknown(0)	deleterious(0)	-	NULL
AQR	9716	genome.wustl.edu	37	15	35167018	35167018	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014691.2	-1	validated	p.G1095	0.991	167	0%	36	19.4%	13	38.4%	-	-	-	superfamily_SSF52540
PAK6	56924	genome.wustl.edu	37	15	40568158	40568158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128628.1	+1	reviewed	p.R637W	1.000	99	1%	136	29.4%	6	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DLL4	54567	genome.wustl.edu	37	15	41226896	41226896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019074.2	+1	reviewed	p.R334H	1.000	163	0%	184	23.9%	3	0%	possibly_damaging(0.517)	tolerated(0.05)	deleterious(0.519)	HMMSmart_EGF_CA,HMMPfam_EGF,superfamily_SSF57196
RPAP1	26015	genome.wustl.edu	37	15	41827781	41827781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015540.2	-1	reviewed	p.A157V	1.000	171	0.6%	138	26.8%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MGA	23269	genome.wustl.edu	37	15	42052632	42052632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080541.2	+1	validated	p.R2484W	0.997	200	0%	89	31.5%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
EPB42	2038	genome.wustl.edu	37	15	43501570	43501570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000119.2	-1	reviewed	p.R275H	0.998	41	0%	37	37.8%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	superfamily_SSF54001
FRMD5	84978	genome.wustl.edu	37	15	44166139	44166139	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451277	-1	known	e9-2	1.000	117	0%	71	23.9%	0	-	-	-	-	-
DUOX2	50506	genome.wustl.edu	37	15	45394138	45394138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014080.4	-1	reviewed	p.E902K	0.996	330	0%	280	25.7%	0	-	benign(0.056)	tolerated(0.15)	neutral(0.244)	superfamily_EF-hand
FBN1	2200	genome.wustl.edu	37	15	48730108	48730108	+	Missense_Mutation	SNP	C	C	T	rs181032147	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000138.4	-1	reviewed	p.R2057Q	0.998	234	0%	45	17.8%	2	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
SLC27A2	11001	genome.wustl.edu	37	15	50515214	50515214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003645.3	+1	reviewed	p.R342Q	1.000	336	0%	143	23.1%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
DMXL2	23312	genome.wustl.edu	37	15	51868279	51868279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015263.3	-1	validated	p.V63L	1.000	142	0%	61	23%	0	-	probably_damaging(0.994)	tolerated(1)	neutral(0.452)	HMMSmart_SM00320,superfamily_WD40 repeat-like
ONECUT1	3175	genome.wustl.edu	37	15	53081347	53081347	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004498.1	-1	provisional	p.N245	1.000	104	0%	147	29.3%	0	-	-	-	-	NULL
UNC13C	440279	genome.wustl.edu	37	15	54529830	54529830	+	Missense_Mutation	SNP	G	G	A	rs182809015	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080534.1	+1	provisional	p.R1057Q	1.000	297	0%	123	22.8%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	NULL
NEDD4	4734	genome.wustl.edu	37	15	56208246	56208246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198400.2	-1	validated	p.R262C	1.000	85	0%	66	19.7%	0	-	unknown(0)	deleterious(0)	-	NULL
LIPC	3990	genome.wustl.edu	37	15	58834792	58834792	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000236.2	+1	reviewed	p.H172	0.980	363	0%	223	23.3%	1	0%	-	-	-	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
NARG2	79664	genome.wustl.edu	37	15	60741812	60741812	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024611.4	-1	validated	p.N452D	0.000	213	0%	94	35.1%	12	25%	benign(0)	tolerated(1)	-	NULL
HERC1	8925	genome.wustl.edu	37	15	63967238	63967238	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003922.3	-1	reviewed	p.A2383	0.135	172	0%	92	18.5%	1	0%	-	-	-	NULL
CILP	8483	genome.wustl.edu	37	15	65489524	65489524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003613.3	-1	reviewed	p.R1034C	0.984	52	0%	54	24.1%	1	100%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
DIS3L	115752	genome.wustl.edu	37	15	66607510	66607510	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133375.3	+1	validated	p.D234	0.003	135	0%	43	27.9%	12	33.3%	-	-	-	NULL
PAQR5	54852	genome.wustl.edu	37	15	69672256	69672256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001104554.1	+1	validated	p.R29H	1.000	295	0.3%	212	29.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENSG00000245371	0	genome.wustl.edu	37	15	69690001	69690001	+	RNA	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000500759	-1	known	NULL	0.000	88	0%	113	20.4%	0	-	-	-	-	-
LARP6	55323	genome.wustl.edu	37	15	71144020	71144020	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_197958.1	-1	validated	p.S80	0.000	490	0%	515	19.4%	17	5.8%	-	-	-	NULL
THSD4	79875	genome.wustl.edu	37	15	71535091	71535091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024817.2	+1	provisional	p.R190W	0.998	118	0%	40	25%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
THSD4	79875	genome.wustl.edu	37	15	72030270	72030270	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024817.2	+1	provisional	p.P610	0.293	223	0%	157	28.7%	42	42.8%	-	-	-	NULL
STOML1	9399	genome.wustl.edu	37	15	74277025	74277025	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004809.3	-1	provisional	p.S326	0.724	62	0%	67	28.4%	8	50%	-	-	-	HMMPfam_SCP2,superfamily_Sterol carrier protein SCP
SEMA7A	8482	genome.wustl.edu	37	15	74703101	74703101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003612.3	-1	reviewed	p.R622H	0.000	80	0%	103	29.1%	7	0%	benign(0.005)	tolerated(0.14)	neutral(0.249)	HMMSmart_IG,superfamily_SSF48726
CYP1A2	1544	genome.wustl.edu	37	15	75042381	75042381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000761.3	+1	reviewed	p.Q101R	1.000	41	0%	62	32.3%	0	-	benign(0.365)	deleterious(0.01)	deleterious(0.522)	HMMPfam_p450,superfamily_Cytochrome_P450
ULK3	25989	genome.wustl.edu	37	15	75131904	75131904	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099436.1	-1	validated	p.R283*	0.011	50	0%	60	13.3%	8	0%	-	-	-	HMMPfam_MIT,HMMSmart_SM00745,superfamily_Protein kinase-like (PK-like)
PTPN9	5780	genome.wustl.edu	37	15	75798324	75798324	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002833.2	-1	reviewed	p.S220	0.906	116	0%	213	17.8%	7	14.2%	-	-	-	HMMPfam_CRAL_TRIO,HMMSmart_SEC14,superfamily_CRAL_TRIO_C
TSPAN3	10099	genome.wustl.edu	37	15	77339192	77339192	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005724.5	-1	reviewed	p.G249	0.000	149	0%	73	30.1%	313	44.4%	-	-	-	NULL
KIAA1199	57214	genome.wustl.edu	37	15	81230234	81230234	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018689.1	+1	validated	p.T1107	0.607	80	0%	36	27.8%	1	0%	-	-	-	NULL
BTBD1	53339	genome.wustl.edu	37	15	83699002	83699002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025238.3	-1	reviewed	p.R314Q	1.000	219	0%	102	30.4%	31	41.9%	benign(0.057)	tolerated(0.68)	neutral(0.005)	NULL
DET1	55070	genome.wustl.edu	37	15	89056287	89056287	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017996.3	-1	validated	p.R527	1.000	105	0%	105	41%	11	27.2%	-	-	-	HMMPfam_Det1
POLG	5428	genome.wustl.edu	37	15	89861872	89861872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126131.1	-1	reviewed	p.R1128C	1.000	112	0%	87	34.5%	24	20.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_A,HMMSmart_POLAc,superfamily_SSF56672
PEX11A	8800	genome.wustl.edu	37	15	90227104	90227104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003847.1	-1	provisional	p.R83H	1.000	210	0%	112	28.6%	5	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PEX11
ANPEP	290	genome.wustl.edu	37	15	90348390	90348390	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001150.2	-1	reviewed	p.T272	0.001	594	0%	529	11.9%	2	0%	-	-	-	HMMPfam_Peptidase_M1,superfamily_SSF63737
IDH2	3418	genome.wustl.edu	37	15	90628113	90628113	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002168.2	-1	reviewed	p.C402	0.958	132	0%	131	26.7%	601	39.4%	-	-	-	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
TTLL13	440307	genome.wustl.edu	37	15	90799414	90799414	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029964.2	+1	validated	p.R197H	0.975	117	0%	116	36.2%	1	0%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_TTL,superfamily_SSF56059
FURIN	5045	genome.wustl.edu	37	15	91425099	91425099	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002569.2	+1	reviewed	p.S792	1.000	17	0%	49	32.7%	49	55.1%	-	-	-	NULL
RGMA	56963	genome.wustl.edu	37	15	93588910	93588910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020211.2	-1	reviewed	p.Q224R	1.000	90	0%	129	20.2%	4	75%	probably_damaging(0.996)	tolerated(0.2)	deleterious(0.511)	HMMPfam_RGM_C
ASB7	140460	genome.wustl.edu	37	15	101152611	101152611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198243.2	+1	reviewed	p.R64W	1.000	303	0%	149	27.5%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
TMEM8A	58986	genome.wustl.edu	37	16	424033	424033	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021259.2	-1	validated	p.M625R	1.000	84	0%	87	20.7%	84	45.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WDR90	197335	genome.wustl.edu	37	16	716291	716291	+	Missense_Mutation	SNP	C	C	T	rs143767432	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145294.4	+1	provisional	p.R1561C	0.920	44	0%	92	31.5%	18	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00320,superfamily_WD40 repeat-like
WDR24	84219	genome.wustl.edu	37	16	736816	736816	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032259.2	-1	provisional	p.A420	0.417	21	0%	43	20.9%	8	62.5%	-	-	-	NULL
TPSB2	64499	genome.wustl.edu	37	16	1278758	1278758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024164.5	-1	reviewed	p.R241C	0.571	147	0%	184	14.7%	0	-	unknown(0)	-	-	HMMSmart_SM00020
CLCN7	1186	genome.wustl.edu	37	16	1499092	1499092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001287.4	-1	reviewed	p.G558R	1.000	63	0%	82	17.1%	54	25.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Voltage_CLC,superfamily_Cl-channel_core
MAPK8IP3	23162	genome.wustl.edu	37	16	1816343	1816343	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015133.3	+1	reviewed	p.G917R	0.998	39	0%	53	32.1%	11	27.2%	benign(0.047)	deleterious(0.01)	neutral(0.409)	NULL
ZNF598	90850	genome.wustl.edu	37	16	2053673	2053673	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431526	-1	known	p.Q93	0.997	224	0%	348	25.9%	10	50%	-	-	-	NULL
CASKIN1	57524	genome.wustl.edu	37	16	2239059	2239059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020764.3	-1	validated	p.A196T	1.000	150	0%	274	20.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PRSS41	360226	genome.wustl.edu	37	16	2848492	2848492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135086.1	+1	provisional	p.A3T	0.000	10	0%	25	40%	0	-	-	-	-	NULL
PAQR4	124222	genome.wustl.edu	37	16	3021160	3021160	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152341.3	+1	validated	p.L57	0.991	87	0%	137	17.5%	7	0%	-	-	-	HMMPfam_HlyIII
PAQR4	124222	genome.wustl.edu	37	16	3021651	3021651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152341.3	+1	validated	p.R175Q	0.999	35	0%	69	21.7%	13	0%	benign(0.015)	tolerated(0.35)	neutral(0.021)	HMMPfam_HlyIII
ZNF213	7760	genome.wustl.edu	37	16	3190916	3190916	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134655.1	+1	validated	p.P316	0.020	7	0.000	36	0.222	4	75%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF75A	7627	genome.wustl.edu	37	16	3363154	3363155	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	TA	TA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153028.2	+1	validated	p.Y27fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
TRAP1	10131	genome.wustl.edu	37	16	3708861	3708861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016292.2	-1	validated	p.A649V	0.000	89	0%	63	20.6%	136	19.1%	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_HSP90,superfamily_SSF110942
CREBBP	1387	genome.wustl.edu	37	16	3779704	3779704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004380.2	-1	reviewed	p.A1782T	1.000	131	0%	184	23.9%	20	45%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_zf-TAZ,HMMSmart_ZnF_TAZ,superfamily_TAZ_finger
ABAT	18	genome.wustl.edu	37	16	8868846	8868846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000663.4	+1	reviewed	p.V352M	0.917	126	0%	103	17.5%	5	60%	benign(0.029)	tolerated(1)	neutral(0.002)	HMMPfam_Aminotran_3,PatternScan_AA_TRANSFER_CLASS_3,superfamily_PyrdxlP-dep_Trfase_major
TEKT5	146279	genome.wustl.edu	37	16	10788644	10788644	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144674.1	-1	provisional	p.A29	0.000	90	0%	85	37.6%	0	-	-	-	-	NULL
PRM2	5620	genome.wustl.edu	37	16	11369732	11369732	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000435245	-1	known	p.S126	0.000	342	0%	345	21.7%	0	-	-	-	-	NULL
RSL1D1	26156	genome.wustl.edu	37	16	11931650	11931650	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015659.2	-1	validated	p.S489	0.000	245	0%	239	25.1%	60	45%	-	-	-	NULL
NOMO1	23420	genome.wustl.edu	37	16	14970589	14970589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014287.3	+1	reviewed	p.A862V	0.997	650	0%	198	18.2%	47	17%	possibly_damaging(0.615)	deleterious(0.05)	deleterious(0.559)	NULL
SMG1	23049	genome.wustl.edu	37	16	18823110	18823110	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015092.4	-1	reviewed	p.P3627	0.000	375	0%	212	24.5%	7	0%	-	-	-	NULL
SMG1	23049	genome.wustl.edu	37	16	18846466	18846466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015092.4	-1	reviewed	p.P2693H	1.000	76	0%	30	43.3%	4	25%	probably_damaging(0.997)	tolerated(0.2)	deleterious(0.515)	NULL
THUMPD1	55623	genome.wustl.edu	37	16	20750268	20750268	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017736.3	-1	validated	p.S119	0.785	432	0.2%	317	25.6%	14	28.5%	-	-	-	NULL
POLR3E	55718	genome.wustl.edu	37	16	22319510	22319510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418581	+1	known	p.R4H	0.060	118	0%	138	25.4%	17	29.4%	-	-	-	HMMPfam_Sin_N
GGA2	23062	genome.wustl.edu	37	16	23507074	23507074	+	Silent	SNP	C	C	T	rs193100017	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015044.4	-1	reviewed	p.S39	0.312	266	0%	240	21.7%	23	26%	-	-	-	HMMPfam_VHS,superfamily_ENTH_VHS,HMMSmart_VHS
GTF3C1	2975	genome.wustl.edu	37	16	27518456	27518456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001520.3	-1	validated	p.R422W	1.000	97	0%	63	33.3%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_B-block_TFIIIC
KIAA0556	23247	genome.wustl.edu	37	16	27789939	27789939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015202.2	+1	validated	p.R1616W	0.639	122	0%	152	18.4%	10	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC101	112869	genome.wustl.edu	37	16	28601431	28601431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138414.2	+1	validated	p.G102S	0.914	122	0%	113	30.1%	16	50%	benign(0.036)	tolerated(0.13)	neutral(0.255)	HMMPfam_DUF1325
SULT1A1	6817	genome.wustl.edu	37	16	28617425	28617425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001055.2	-1	reviewed	p.V243I	0.008	672	0%	771	15.2%	51	37.2%	benign(0)	tolerated(0.84)	neutral(0.001)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
TAOK2	9344	genome.wustl.edu	37	16	29996541	29996541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016151.2	+1	validated	p.R477H	1.000	44	0%	57	21.1%	19	36.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
ALDOA	226	genome.wustl.edu	37	16	30080687	30080687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000034.2	+1	reviewed	p.R201C	1.000	164	0%	237	17.3%	1449	22.3%	benign(0.003)	deleterious(0.01)	neutral(0.406)	HMMPfam_Glycolytic,superfamily_SSF51569
ZNF689	115509	genome.wustl.edu	37	16	30615983	30615983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138447.1	-1	provisional	p.G369R	0.988	53	0%	101	22.8%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF57667
SRCAP	10847	genome.wustl.edu	37	16	30749491	30749491	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006662.2	+1	validated	p.S2710	0.974	52	1.9%	54	24.1%	27	40.7%	-	-	-	NULL
HSD3B7	80270	genome.wustl.edu	37	16	30998292	30998292	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025193.3	+1	reviewed	p.P221	0.001	30	0%	43	25.6%	19	15.7%	-	-	-	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd
ITGAX	3687	genome.wustl.edu	37	16	31383059	31383059	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000887.3	+1	reviewed	p.V705D	0.000	108	0%	111	23.4%	6	0%	benign(0.016)	deleterious(0.01)	neutral(0.406)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
ABCC11	85320	genome.wustl.edu	37	16	48204045	48204045	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032583.3	-1	reviewed	p.I1288F	1.000	94	0%	95	31.6%	0	-	possibly_damaging(0.616)	deleterious(0.03)	deleterious(0.579)	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
LONP2	83752	genome.wustl.edu	37	16	48368209	48368209	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031490.2	+1	provisional	p.P626	0.029	242	0%	128	18%	32	31.2%	-	-	-	superfamily_SSF52540
ADCY7	113	genome.wustl.edu	37	16	50325704	50325704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114.3	+1	reviewed	p.R145W	0.360	201	0%	175	24.6%	3	33.3%	benign(0.006)	tolerated(0.2)	neutral(0.049)	NULL
SLC6A2	6530	genome.wustl.edu	37	16	55734199	55734199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001043.3	+1	reviewed	p.T580M	0.000	232	0%	132	25.8%	1	0%	benign(0.005)	deleterious(0.04)	neutral(0.349)	HMMPfam_SNF
SLC12A3	6559	genome.wustl.edu	37	16	56904129	56904129	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000339.2	+1	reviewed	p.T241	0.003	70	0%	72	30.6%	0	-	-	-	-	HMMPfam_AA_permease
ZNF319	57567	genome.wustl.edu	37	16	58031079	58031079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020807.1	-1	provisional	p.T364I	1.000	163	0%	191	22%	10	60%	probably_damaging(1)	tolerated(1)	deleterious(0.500)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CDH8	1006	genome.wustl.edu	37	16	61687935	61687935	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001796.2	-1	reviewed	p.D659	0.967	56	0%	39	30.8%	0	-	-	-	-	HMMPfam_Cadherin_C
TK2	7084	genome.wustl.edu	37	16	66551745	66551745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004614.4	-1	reviewed	p.S204L	0.057	296	0.3%	268	21.6%	15	53.3%	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMPfam_dNK,superfamily_P-loop containing nucleoside triphosphate hydrolases
DYNC1LI2	1783	genome.wustl.edu	37	16	66761663	66761663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006141.2	-1	validated	p.R397W	1.000	123	0%	65	27.7%	19	31.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_DLIC
CES2	8824	genome.wustl.edu	37	16	66974547	66974547	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003869.4	+1	reviewed	p.G319	0.457	304	0.3%	292	30.5%	21	38%	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
PLEKHG4	25894	genome.wustl.edu	37	16	67319064	67319064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129727.1	+1	reviewed	p.Q714R	0.002	14	0%	31	22.6%	0	-	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
CTCF	10664	genome.wustl.edu	37	16	67655479	67655479	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.R448*	1.000	159	0%	113	14.2%	19	5.2%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GFOD2	81577	genome.wustl.edu	37	16	67709421	67709421	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030819.3	-1	validated	p.A265	0.945	45	0%	63	34.9%	13	30.7%	-	-	-	superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain
GFOD2	81577	genome.wustl.edu	37	16	67709903	67709903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030819.3	-1	validated	p.R105W	1.000	115	0%	102	29.4%	9	22.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_NAD(P)-binding Rossmann-fold domains
TSNAXIP1	55815	genome.wustl.edu	37	16	67855110	67855110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000415766	+1	known	p.P86T	0.018	38	0%	33	15.2%	0	-	benign(0)	-	-	NULL
ST3GAL2	6483	genome.wustl.edu	37	16	70432418	70432418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006927.3	-1	reviewed	p.R6W	1.000	82	0%	57	26.3%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VAC14	55697	genome.wustl.edu	37	16	70815792	70815792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018052.3	-1	validated	p.A309V	1.000	76	0%	47	27.7%	18	61.1%	benign(0.141)	deleterious(0.03)	neutral(0.377)	superfamily_ARM-type_fold
DHODH	1723	genome.wustl.edu	37	16	72057410	72057410	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001361.3	+1	reviewed	p.S337	0.697	112	0%	124	20.2%	9	11.1%	-	-	-	PatternScan_DHODEHASE_2,HMMPfam_DHO_dh,superfamily_SSF51395
ZFHX3	463	genome.wustl.edu	37	16	72991509	72991509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006885.3	-1	reviewed	p.R846C	1.000	347	0%	336	18.8%	1	0%	unknown(0)	-	-	NULL
HSDL1	83693	genome.wustl.edu	37	16	84163994	84163994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031463.4	-1	validated	p.A88V	1.000	144	0%	128	29.7%	6	33.3%	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
ATP2C2	9914	genome.wustl.edu	37	16	84492939	84492939	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014861.2	+1	validated	p.N760	0.659	126	0%	131	22.1%	20	45%	-	-	-	HMMPfam_Cation_ATPase_C,superfamily_Calcium ATPase transmembrane domain M
SPG7	6687	genome.wustl.edu	37	16	89619531	89619531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003119.2	+1	reviewed	p.E642K	1.000	67	0%	72	23.6%	32	28.1%	benign(0)	tolerated(0.66)	neutral(0.003)	HMMPfam_Peptidase_M41,superfamily_P-loop containing nucleoside triphosphate hydrolases
SGSM2	9905	genome.wustl.edu	37	17	2270646	2270646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014853.2	+1	validated	p.A457V	1.000	89	0%	110	12.7%	1	0%	possibly_damaging(0.647)	tolerated(0.16)	neutral(0.286)	NULL
TRPV3	162514	genome.wustl.edu	37	17	3417914	3417914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145068.2	-1	reviewed	p.E751K	1.000	258	0%	123	14.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C17orf85	55421	genome.wustl.edu	37	17	3716500	3716500	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114118.1	-1	provisional	p.A567	0.000	369	0%	267	25.1%	15	80%	-	-	-	NULL
CYB5D2	124936	genome.wustl.edu	37	17	4053193	4053193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144611.3	+1	validated	p.A87T	1.000	190	0%	146	18.5%	25	12%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Cyt-b5,superfamily_Cyt_B5
MYBBP1A	10514	genome.wustl.edu	37	17	4442924	4442924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105538.1	-1	validated	p.P1258L	0.006	98	0%	219	23.3%	25	28%	benign(0)	tolerated(1)	-	NULL
ARRB2	409	genome.wustl.edu	37	17	4623511	4623511	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004313.3	+1	reviewed	p.I306	0.125	323	0%	339	23.3%	46	19.5%	-	-	-	HMMPfam_Arrestin_C,superfamily_E set domains
PLD2	5338	genome.wustl.edu	37	17	4721315	4721315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002663.3	+1	validated	p.R612C	1.000	153	0%	132	22%	8	25%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	superfamily_Phospholipase D/nuclease
MINK1	50488	genome.wustl.edu	37	17	4790901	4790901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153827.4	+1	reviewed	p.S349L	1.000	29	0%	44	31.8%	31	29%	probably_damaging(0.959)	tolerated(0.07)	deleterious(0.722)	NULL
BCL6B	255877	genome.wustl.edu	37	17	6930059	6930059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181844.3	+1	validated	p.R364C	1.000	99	0%	140	32.9%	2	0%	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SHBG	6462	genome.wustl.edu	37	17	7534638	7534638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040.3	+1	reviewed	p.L172I	0.000	66	0%	80	20%	0	-	benign(0.11)	tolerated(0.36)	neutral(0.029)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_1
EFNB3	1949	genome.wustl.edu	37	17	7611412	7611412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001406.3	+1	reviewed	p.A87T	1.000	20	0%	54	31.5%	0	-	benign(0.088)	tolerated(0.08)	neutral(0.306)	HMMPfam_Ephrin,superfamily_Cupredoxins
DNAH2	146754	genome.wustl.edu	37	17	7720031	7720031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.A3291V	1.000	226	0%	207	29.5%	1	100%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
CHD3	1107	genome.wustl.edu	37	17	7811274	7811274	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005271.2	+1	reviewed	p.R1756*	1.000	140	0%	156	25.6%	42	14.2%	-	-	-	NULL
ALOX15B	247	genome.wustl.edu	37	17	7948299	7948299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001141.2	+1	reviewed	p.S277G	0.707	297	0%	212	26.9%	0	-	possibly_damaging(0.892)	deleterious(0.05)	deleterious(0.697)	HMMPfam_Lipoxygenase,superfamily_Lipoxigenase
AURKB	9212	genome.wustl.edu	37	17	8111127	8111127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004217.2	-1	validated	p.R27Q	1.000	307	0%	327	24.2%	7	14.2%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
RCVRN	5957	genome.wustl.edu	37	17	9808264	9808264	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002903.2	-1	reviewed	p.D78	0.992	300	0%	244	29.1%	0	-	-	-	-	HMMSmart_SM00054,superfamily_EF-hand
MYH13	8735	genome.wustl.edu	37	17	10265487	10265487	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003802.2	-1	validated	p.A151	1.000	345	0%	155	30.3%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYH3	4621	genome.wustl.edu	37	17	10550730	10550730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002470.2	-1	reviewed	p.R250Q	1.000	108	0%	95	30.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
DNAH9	1770	genome.wustl.edu	37	17	11554417	11554417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001372.3	+1	reviewed	p.L710P	0.997	208	0.5%	115	21.7%	0	-	benign(0.076)	deleterious(0)	neutral(0.450)	HMMPfam_DHC_N1
ELAC2	60528	genome.wustl.edu	37	17	12908384	12908384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018127.6	-1	reviewed	p.P302H	1.000	230	0%	216	27.8%	29	48.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MPRIP	23164	genome.wustl.edu	37	17	17069173	17069173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000414263	+1	known	p.R102W	1.000	12	0%	27	22.2%	1	0%	possibly_damaging(0.67)	tolerated(0.31)	neutral(0.265)	NULL
MYO15A	51168	genome.wustl.edu	37	17	18039938	18039938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016239.3	+1	reviewed	p.A1573T	0.964	110	0%	96	24%	0	-	benign(0.066)	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO15A	51168	genome.wustl.edu	37	17	18045510	18045510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016239.3	+1	reviewed	p.R1923C	1.000	110	0%	83	20.5%	0	-	possibly_damaging(0.612)	-	-	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
LLGL1	3996	genome.wustl.edu	37	17	18145007	18145007	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004140.3	+1	reviewed	p.C915	0.452	57	0%	107	28%	22	45.4%	-	-	-	NULL
SMCR7	125170	genome.wustl.edu	37	17	18167892	18167892	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148886.1	+1	reviewed	p.T404	0.390	83	0%	71	19.7%	7	28.5%	-	-	-	NULL
FBXW10	10517	genome.wustl.edu	37	17	18659377	18659377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031456.3	+1	validated	p.T381I	0.999	444	0%	243	19.8%	0	-	possibly_damaging(0.625)	deleterious(0.04)	deleterious(0.567)	superfamily_WD40 repeat-like,superfamily_F-box domain
SLC47A2	146802	genome.wustl.edu	37	17	19611657	19611657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152908.3	-1	validated	p.V232A	0.113	178	0%	157	24.8%	0	-	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
PIPOX	51268	genome.wustl.edu	37	17	27380109	27380109	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016518.2	+1	validated	p.S145	0.000	73	0%	61	23%	0	-	-	-	-	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain
ATAD5	79915	genome.wustl.edu	37	17	29214372	29214372	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024857.3	+1	provisional	p.R1414*	1.000	140	0%	77	27.3%	1	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ADAP2	55803	genome.wustl.edu	37	17	29283270	29283270	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018404.2	+1	validated	p.E298	1.000	90	0%	71	31%	8	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
RHOT1	55288	genome.wustl.edu	37	17	30551667	30551667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033568.1	+1	validated	p.T664M	1.000	260	0%	85	29.4%	20	25%	possibly_damaging(0.824)	deleterious(0.01)	deleterious(0.718)	NULL
MYO1D	4642	genome.wustl.edu	37	17	31099856	31099856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015194.1	-1	provisional	p.R190Q	1.000	177	0%	96	30.2%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TMEM98	26022	genome.wustl.edu	37	17	31266506	31266506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033504.1	+1	validated	p.V142A	1.000	293	0%	166	22.9%	40	40%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
ASIC2	40	genome.wustl.edu	37	17	31355357	31355357	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183377.1	-1	reviewed	p.L347	0.996	103	0%	71	32.4%	2	50%	-	-	-	HMMPfam_ASC
MMP28	79148	genome.wustl.edu	37	17	34097216	34097216	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024302.3	-1	reviewed	p.T240M	1.000	20	0%	15	46.7%	2	0%	-	-	-	NULL
GGNBP2	79893	genome.wustl.edu	37	17	34934444	34934444	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024835.2	+1	validated	p.R225*	1.000	102	0%	139	27.3%	17	5.8%	-	-	-	NULL
SRCIN1	80725	genome.wustl.edu	37	17	36689599	36689599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025248.2	-1	validated	p.S1162L	0.996	105	0%	113	28.3%	0	-	benign(0.038)	deleterious(0)	neutral(0.447)	NULL
SRCIN1	80725	genome.wustl.edu	37	17	36719065	36719065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025248.2	-1	validated	p.R278W	1.000	132	0%	184	22.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MLLT6	4302	genome.wustl.edu	37	17	36865441	36865441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005937.3	+1	validated	p.E124K	1.000	73	0%	98	31.6%	9	44.4%	benign(0.194)	tolerated(1)	neutral(0.018)	HMMSmart_PHD
PSMD3	5709	genome.wustl.edu	37	17	38145006	38145006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002809.2	+1	reviewed	p.A207V	0.992	221	0%	187	23%	72	33.3%	benign(0)	deleterious(0.02)	neutral(0.383)	superfamily_TPR-like
CCR7	1236	genome.wustl.edu	37	17	38711511	38711511	+	Missense_Mutation	SNP	G	G	A	rs141181444	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001838.2	-1	reviewed	p.A207V	0.001	147	0.7%	121	32.2%	0	-	benign(0)	tolerated(0.53)	neutral(0.007)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KRT32	3882	genome.wustl.edu	37	17	39616408	39616408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002278.3	-1	reviewed	p.R434H	0.100	84	0%	44	20.5%	0	-	benign(0.001)	tolerated(0.61)	neutral(0.004)	NULL
KRT35	3886	genome.wustl.edu	37	17	39637346	39637346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002280.4	-1	reviewed	p.A2T	1.000	33	0%	37	21.6%	0	-	benign(0.059)	tolerated(0.3)	neutral(0.033)	NULL
KAT2A	2648	genome.wustl.edu	37	17	40267764	40267764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021078.2	-1	validated	p.A618T	1.000	338	0.9%	441	26.8%	25	24%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Acetyltransf_1,superfamily_Acyl-CoA N-acyltransferases (Nat)
MLX	6945	genome.wustl.edu	37	17	40722073	40722073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170607.2	+1	reviewed	p.K238E	1.000	218	0%	245	20.4%	40	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Bet v1-like
PLEKHH3	79990	genome.wustl.edu	37	17	40825745	40825745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024927.4	-1	validated	p.G136R	1.000	6	0.000	11	0.364	13	15.3%	possibly_damaging(0.923)	tolerated(0.05)	deleterious(0.718)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
WNK4	65266	genome.wustl.edu	37	17	40933061	40933061	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032387.4	+1	reviewed	p.P115	0.000	17	0%	38	34.2%	0	-	-	-	-	NULL
WNK4	65266	genome.wustl.edu	37	17	40936141	40936141	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032387.4	+1	reviewed	p.T326	0.664	188	0%	238	21.4%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
WNK4	65266	genome.wustl.edu	37	17	40937379	40937379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032387.4	+1	reviewed	p.G452D	0.990	31	0%	75	24%	0	-	possibly_damaging(0.624)	tolerated(0.09)	deleterious(0.514)	superfamily_Protein kinase-like (PK-like)
SOST	50964	genome.wustl.edu	37	17	41835933	41835933	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025237.2	-1	reviewed	p.A59	0.997	122	0%	141	19.1%	0	-	-	-	-	HMMPfam_Sclerostin
DUSP3	1845	genome.wustl.edu	37	17	41847062	41847062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004090.3	-1	reviewed	p.R158H	1.000	159	0%	115	22.6%	39	38.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
CD300LG	146894	genome.wustl.edu	37	17	41934519	41934519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145273.3	+1	validated	p.R294C	0.000	207	0.5%	120	24.2%	0	-	probably_damaging(0.968)	deleterious(0.01)	deleterious(0.816)	NULL
C17orf104	284071	genome.wustl.edu	37	17	42744000	42744000	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145080.2	+1	validated	p.R241*	0.984	141	0%	124	21.8%	0	-	-	-	-	NULL
FMNL1	752	genome.wustl.edu	37	17	43323899	43323899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005892.3	+1	reviewed	p.R1080H	1.000	113	0%	197	25.4%	1	0%	unknown(0)	tolerated(0.05)	-	NULL
MAP3K14	9020	genome.wustl.edu	37	17	43344487	43344487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000344686	-1	known	p.S801N	1.000	74	0%	89	25.8%	12	16.6%	possibly_damaging(0.839)	deleterious(0)	deleterious(0.765)	NULL
ARHGAP27	201176	genome.wustl.edu	37	17	43481688	43481688	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199282.2	-1	validated	p.L135	0.000	74	0%	131	27.5%	3	0%	-	-	-	NULL
ARHGAP27	201176	genome.wustl.edu	37	17	43483043	43483043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199282.2	-1	validated	p.R14Q	0.899	19	0%	38	18.4%	11	27.2%	probably_damaging(0.999)	tolerated(0.33)	deleterious(0.514)	NULL
LRRC37A2	474170	genome.wustl.edu	37	17	44626102	44626102	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006607.2	+1	validated	p.N1199	0.001	49	0%	47	38.3%	8	0%	-	-	-	NULL
C17orf57	124989	genome.wustl.edu	37	17	45490179	45490179	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152347.3	+1	provisional	p.N773	0.997	220	0%	177	16.4%	0	-	-	-	-	superfamily_EF-hand
NPEPPS	9520	genome.wustl.edu	37	17	45656879	45656879	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006310.3	+1	reviewed	e4+2	1.000	82	0%	39	10.3%	0	-	-	-	-	-
SPOP	8405	genome.wustl.edu	37	17	47696430	47696430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007226.1	-1	reviewed	p.W131C	1.000	136	0%	72	13.9%	22	31.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
SKA2	348235	genome.wustl.edu	37	17	57189674	57189674	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182620.3	-1	validated	p.A110	0.726	102	0%	195	23.1%	34	20.5%	-	-	-	NULL
MRC2	9902	genome.wustl.edu	37	17	60768091	60768091	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006039.3	+1	validated	p.G1327	0.133	135	0%	223	27.8%	14	7.1%	-	-	-	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
CSH2	1443	genome.wustl.edu	37	17	61950690	61950690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020991.3	-1	reviewed	p.T7M	0.000	154	0%	138	13.8%	0	-	benign(0.022)	tolerated(0.27)	neutral(0.035)	NULL
GH2	2689	genome.wustl.edu	37	17	61957709	61957709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022558.2	-1	reviewed	p.A208T	1.000	401	0.2%	337	18.1%	0	-	benign(0.145)	deleterious(0)	neutral(0.457)	NULL
FAM20A	54757	genome.wustl.edu	37	17	66533712	66533712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017565.3	-1	validated	p.G511V	0.000	247	0%	72	11.1%	72	4.1%	benign(0.014)	tolerated(0.07)	neutral(0.320)	HMMPfam_DUF1193
MAP2K6	5608	genome.wustl.edu	37	17	67515455	67515455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002758.3	+1	reviewed	p.R83Q	1.000	221	0%	85	24.7%	84	17.8%	probably_damaging(0.962)	tolerated(0.34)	neutral(0.428)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SOX9	6662	genome.wustl.edu	37	17	70120418	70120418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000346.3	+1	reviewed	p.R474C	1.000	189	0%	250	25.6%	51	52.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SDK2	54549	genome.wustl.edu	37	17	71434256	71434256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144952.1	-1	provisional	p.G255R	1.000	58	0%	75	20%	2	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
TTYH2	94015	genome.wustl.edu	37	17	72249359	72249359	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032646.5	+1	reviewed	p.Q467*	1.000	86	0%	90	26.7%	1	0%	-	-	-	NULL
SLC9A3R1	9368	genome.wustl.edu	37	17	72764798	72764798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413388	+1	known	p.A248T	0.000	39	0%	92	38%	255	58%	unknown(0)	deleterious(0)	-	NULL
NUP85	79902	genome.wustl.edu	37	17	73229176	73229176	+	Missense_Mutation	SNP	G	G	A	rs149330582	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024844.3	+1	reviewed	p.R513Q	0.829	254	0%	213	28.2%	35	31.4%	benign(0.074)	tolerated(0.47)	neutral(0.016)	HMMPfam_Nucleopor_Nup85
CASKIN2	57513	genome.wustl.edu	37	17	73501022	73501022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020753.3	-1	validated	p.R355C	0.997	20	0%	33	36.4%	14	71.4%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	superfamily_SH3-domain,superfamily_Ankyrin repeat
EVPL	2125	genome.wustl.edu	37	17	74005048	74005048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001988.2	-1	validated	p.R1413Q	0.282	69	0%	78	26.9%	7	28.5%	possibly_damaging(0.624)	tolerated(0.38)	neutral(0.235)	NULL
UBE2O	63893	genome.wustl.edu	37	17	74395609	74395609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022066.3	-1	validated	p.P517T	1.000	396	0%	477	27%	14	14.2%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	NULL
RHBDF2	79651	genome.wustl.edu	37	17	74475072	74475072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024599.3	-1	validated	p.R192Q	1.000	60	0%	58	41.4%	16	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SEPT9	10801	genome.wustl.edu	37	17	75483612	75483612	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113491.1	+1	reviewed	p.I340	0.018	113	0%	174	27%	199	34.6%	-	-	-	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases
TMC8	147138	genome.wustl.edu	37	17	76129939	76129939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152468.4	+1	reviewed	p.V225A	1.000	30	0%	52	26.9%	2	0%	benign(0.006)	tolerated(1)	-	NULL
CBX4	8535	genome.wustl.edu	37	17	77808756	77808756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003655.2	-1	validated	p.P229T	0.987	57	0%	171	24%	10	40%	benign(0.138)	tolerated(0.11)	neutral(0.283)	NULL
CCDC40	55036	genome.wustl.edu	37	17	78069191	78069191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017950.2	+1	validated	p.R988C	0.378	72	0%	95	18.9%	1	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ENDOV	284131	genome.wustl.edu	37	17	78395752	78395752	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173627.3	+1	validated	p.L118R	0.378	94	0%	120	23.3%	1	0%	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	HMMPfam_Endonuclease_5
CHMP6	79643	genome.wustl.edu	37	17	78970847	78970847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024591.4	+1	validated	p.T130M	1.000	93	0%	134	22.4%	12	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Snf7
P4HB	5034	genome.wustl.edu	37	17	79817123	79817123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000918.3	-1	reviewed	p.V96M	0.995	179	0%	216	24.5%	476	42.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
PYCR1	5831	genome.wustl.edu	37	17	79893243	79893243	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006907.2	-1	reviewed	p.A96	0.516	85	0%	141	31.2%	29	31%	-	-	-	HMMPfam_F420_oxidored,superfamily_NAD(P)-binding Rossmann-fold domains
LRRC45	201255	genome.wustl.edu	37	17	79985552	79985552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144999.2	+1	provisional	p.A279V	0.046	56	0%	53	26.4%	20	35%	benign(0.001)	tolerated(1)	-	NULL
RAC3	5881	genome.wustl.edu	37	17	79991387	79991387	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005052.2	+1	reviewed	p.R120	0.906	88	0%	208	26%	18	44.4%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
GPS1	2873	genome.wustl.edu	37	17	80011212	80011212	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_212492.1	+1	reviewed	p.D72	0.962	117	0%	136	28.7%	73	43.8%	-	-	-	NULL
FASN	2194	genome.wustl.edu	37	17	80041976	80041976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004104.4	-1	reviewed	p.A1658V	0.686	38	0%	45	20%	11	9%	possibly_damaging(0.487)	deleterious(0)	deleterious(0.607)	superfamily_GroES-like,superfamily_NAD(P)-binding Rossmann-fold domains
HEXDC	284004	genome.wustl.edu	37	17	80393626	80393626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173620.2	+1	validated	p.T170M	0.000	36	0%	51	21.6%	10	20%	possibly_damaging(0.513)	deleterious(0.04)	deleterious(0.521)	HMMPfam_Glyco_hydro_20,superfamily_Glyco_hydro_cat
NARF	26502	genome.wustl.edu	37	17	80430520	80430520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012336.3	+1	reviewed	p.R156C	0.870	182	0%	132	27.3%	30	33.3%	probably_damaging(0.976)	deleterious(0.05)	deleterious(0.763)	HMMPfam_Fe_hyd_lg_C,superfamily_Fe-only hydrogenase
ENSG00000173213	0	genome.wustl.edu	37	18	47803	47803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000308911	-1	known	p.G308S	1.000	37	0%	58	27.6%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C
NDC80	10403	genome.wustl.edu	37	18	2610840	2610840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006101.2	+1	validated	p.T591A	0.999	141	0%	30	16.7%	6	33.3%	benign(0.093)	tolerated(0.46)	neutral(0.019)	NULL
IMPA2	3613	genome.wustl.edu	37	18	12012198	12012198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014214.1	+1	validated	p.F122S	1.000	176	0%	220	31.4%	18	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Inositol_P,superfamily_Carbohydrate phosphatase
CEP192	55125	genome.wustl.edu	37	18	13049261	13049261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032142.3	+1	validated	p.P228L	0.000	201	0%	137	16.1%	3	66.6%	benign(0)	tolerated(1)	-	NULL
GREB1L	80000	genome.wustl.edu	37	18	19088425	19088425	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142966.1	+1	provisional	p.H1536	0.998	93	0%	61	16.4%	0	-	-	-	-	NULL
TCEB3B	51224	genome.wustl.edu	37	18	44560088	44560088	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016427.2	-1	reviewed	p.S516	0.009	62	0%	115	26.1%	0	-	-	-	-	NULL
C18orf32	497661	genome.wustl.edu	37	18	47010019	47010019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035005.2	-1	predicted	p.R34C	0.610	322	0%	346	24.9%	45	33.3%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
NEDD4L	23327	genome.wustl.edu	37	18	56057899	56057899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144967.1	+1	validated	p.E893K	1.000	300	0%	194	28.4%	28	67.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
PHLPP1	23239	genome.wustl.edu	37	18	60497369	60497369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194449.2	+1	validated	p.R48C	1.000	246	0%	89	23.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH
SOCS6	9306	genome.wustl.edu	37	18	67993303	67993303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004232.3	+1	reviewed	p.N467D	1.000	243	0%	137	31.4%	20	30%	benign(0.008)	deleterious(0.04)	neutral(0.349)	HMMSmart_SH2,superfamily_SSF55550
MBP	4155	genome.wustl.edu	37	18	74778284	74778284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025101.1	-1	reviewed	p.R37W	0.001	236	0%	277	19.9%	13	30.7%	possibly_damaging(0.938)	deleterious(0.03)	deleterious(0.748)	NULL
ATP9B	374868	genome.wustl.edu	37	18	77133986	77133986	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198531.3	+1	validated	p.T1053	0.019	277	0%	298	23.2%	31	54.8%	-	-	-	NULL
CTDP1	9150	genome.wustl.edu	37	18	77477922	77477922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004715.3	+1	reviewed	p.D775N	0.990	34	0%	48	29.2%	12	41.6%	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_FCP1_C
THEG	51298	genome.wustl.edu	37	19	362276	362276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016585.3	-1	reviewed	p.R355H	0.036	366	0%	461	31%	0	-	benign(0.013)	tolerated(0.59)	neutral(0.005)	NULL
RNF126	55658	genome.wustl.edu	37	19	651753	651753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194460.2	-1	reviewed	p.Q101K	0.006	17	0%	26	19.2%	28	25%	benign(0.27)	tolerated(0.17)	neutral(0.088)	NULL
ABCA7	10347	genome.wustl.edu	37	19	1058741	1058741	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019112.3	+1	reviewed	p.L1758	0.522	164	0%	258	26.4%	31	54.8%	-	-	-	NULL
REXO1	57455	genome.wustl.edu	37	19	1827392	1827392	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020695.3	-1	validated	p.R466*	0.000	5	0.000	7	0.571	0	-	-	-	-	NULL
DIRAS1	148252	genome.wustl.edu	37	19	2717296	2717296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145173.3	-1	validated	p.R170H	0.991	70	0%	91	20.9%	0	-	benign(0.003)	deleterious(0)	neutral(0.445)	HMMSmart_RAS,HMMPfam_Ras,superfamily_SSF52540
THOP1	7064	genome.wustl.edu	37	19	2807528	2807528	+	Silent	SNP	C	C	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003249.3	+1	provisional	p.G325	0.149	46	2.2%	49	26.5%	6	50%	-	-	-	HMMPfam_Peptidase_M3,superfamily_SSF55486
PIP5K1C	23396	genome.wustl.edu	37	19	3664847	3664847	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012398.1	-1	reviewed	p.D64	1.000	58	0%	80	22.5%	10	60%	-	-	-	NULL
MATK	4145	genome.wustl.edu	37	19	3778305	3778305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002378.3	-1	reviewed	p.R468H	0.032	17	0%	22	27.3%	0	-	probably_damaging(0.977)	deleterious(0.02)	deleterious(0.802)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
ZFR2	23217	genome.wustl.edu	37	19	3827605	3827605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015174.1	-1	validated	p.A300V	1.000	54	0%	80	23.7%	0	-	possibly_damaging(0.559)	deleterious(0.01)	deleterious(0.596)	HMMSmart_SM00451
CHAF1A	10036	genome.wustl.edu	37	19	4432096	4432096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005483.2	+1	validated	p.D699N	0.000	38	0%	42	16.7%	15	20%	possibly_damaging(0.919)	tolerated(0.35)	neutral(0.390)	NULL
KDM4B	23030	genome.wustl.edu	37	19	5131295	5131295	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015015.2	+1	validated	p.V508	0.088	17	0%	28	21.4%	13	30.7%	-	-	-	NULL
SAFB2	9667	genome.wustl.edu	37	19	5590311	5590311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014649.2	-1	validated	p.R835W	0.825	19	0%	28	28.6%	24	33.3%	unknown(0)	deleterious(0)	-	NULL
ACER1	125981	genome.wustl.edu	37	19	6306880	6306880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133492.2	-1	validated	p.S214G	1.000	79	0%	44	29.5%	0	-	benign(0.138)	tolerated(0.44)	neutral(0.024)	HMMPfam_aPHC
CLPP	8192	genome.wustl.edu	37	19	6362538	6362538	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006012.2	+1	reviewed	p.Y118N	1.000	208	0%	293	18.1%	127	22%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CLP_protease,superfamily_SSF52096
PNPLA6	10908	genome.wustl.edu	37	19	7620597	7620597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006702.4	+1	reviewed	p.A976V	0.998	37	0%	58	20.7%	11	0%	probably_damaging(0.986)	deleterious(0.03)	deleterious(0.799)	HMMPfam_Patatin,superfamily_Acyl_Trfase/lysoPlipase
EVI5L	115704	genome.wustl.edu	37	19	7912617	7912617	+	Splice_Site	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145245.3	+1	validated	e2-1	1.000	60	0%	62	19.4%	0	-	-	-	-	-
EVI5L	115704	genome.wustl.edu	37	19	7914023	7914023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145245.3	+1	validated	p.V182I	0.999	63	0%	91	28.6%	12	75%	benign(0.071)	tolerated(0.33)	neutral(0.029)	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC
MAP2K7	5609	genome.wustl.edu	37	19	7976406	7976406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145185.2	+1	reviewed	p.P341L	1.000	46	0%	73	23.3%	18	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAP2K7	5609	genome.wustl.edu	37	19	7976417	7976417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145185.2	+1	reviewed	p.G345R	0.545	42	0%	66	10.6%	17	29.4%	benign(0.004)	tolerated(0.45)	neutral(0.012)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MYO1F	4542	genome.wustl.edu	37	19	8615058	8615058	+	Missense_Mutation	SNP	C	C	T	rs139211736	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012335.3	-1	validated	p.D363N	1.000	52	0%	44	31.8%	8	0%	probably_damaging(0.976)	tolerated(0.13)	deleterious(0.670)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPAN	56342	genome.wustl.edu	37	19	10224481	10224481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428358	+1	known	p.P505L	0.256	54	0%	109	22.9%	7	0%	unknown(0)	-	-	NULL
P2RY11	5032	genome.wustl.edu	37	19	10225220	10225220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002566.4	+1	reviewed	p.P311S	0.961	41	0%	47	27.7%	19	42.1%	probably_damaging(0.998)	tolerated(0.62)	deleterious(0.478)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
P2RY11	5032	genome.wustl.edu	37	19	10225327	10225327	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002566.4	+1	reviewed	p.D346	0.001	58	0%	89	19.1%	17	5.8%	-	-	-	NULL
RAVER1	125950	genome.wustl.edu	37	19	10439571	10439571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133452.2	-1	validated	p.R185H	0.996	45	0%	32	40.6%	25	52%	possibly_damaging(0.91)	tolerated(0.09)	deleterious(0.659)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
AP1M2	10053	genome.wustl.edu	37	19	10690406	10690406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005498.4	-1	reviewed	p.R268C	1.000	165	0%	150	28.7%	101	34.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
HOOK2	29911	genome.wustl.edu	37	19	12878234	12878234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013312.2	-1	validated	p.A450T	1.000	60	0%	122	20.5%	23	26%	possibly_damaging(0.694)	tolerated(0.27)	neutral(0.282)	HMMPfam_HOOK
MAST1	22983	genome.wustl.edu	37	19	12984173	12984173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014975.2	+1	validated	p.K1100R	1.000	46	0%	67	20.9%	0	-	benign(0.018)	tolerated(0.17)	neutral(0.059)	NULL
NACC1	112939	genome.wustl.edu	37	19	13246664	13246664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052876.2	+1	validated	p.R215W	0.967	23	0%	48	29.2%	13	46.1%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
CCDC130	81576	genome.wustl.edu	37	19	13873536	13873536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030818.2	+1	provisional	p.A282V	0.000	13	0%	21	33.3%	37	43.2%	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_DUF572
IL27RA	9466	genome.wustl.edu	37	19	14153273	14153273	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004843.2	+1	reviewed	p.P181	0.000	88	0%	113	24.8%	5	20%	-	-	-	HMMSmart_SM00060,superfamily_Fibronectin type III
CD97	976	genome.wustl.edu	37	19	14515214	14515214	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078481.2	+1	reviewed	p.R490Q	0.000	52	0%	66	22.7%	54	22.2%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GIPC1	10755	genome.wustl.edu	37	19	14591296	14591296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005716.2	-1	validated	p.R159H	1.000	116	0%	130	24.6%	290	50.6%	possibly_damaging(0.85)	deleterious(0.01)	deleterious(0.733)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
OR7C1	26664	genome.wustl.edu	37	19	14910584	14910584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198944.1	-1	validated	p.R122H	0.476	274	0%	181	24.9%	0	-	probably_damaging(0.97)	deleterious(0.02)	deleterious(0.795)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
NOTCH3	4854	genome.wustl.edu	37	19	15276250	15276250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000435.2	-1	reviewed	p.R1915H	1.000	170	0%	171	28.1%	33	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
NOTCH3	4854	genome.wustl.edu	37	19	15291547	15291547	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000435.2	-1	reviewed	p.S1029	0.141	54	0%	69	29%	16	25%	-	-	-	HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin
NWD1	284434	genome.wustl.edu	37	19	16902313	16902313	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007525.2	+1	validated	p.T896	0.012	166	0%	102	22.5%	1	0%	-	-	-	superfamily_WD40 repeat-like
GLT25D1	79709	genome.wustl.edu	37	19	17691561	17691561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024656.2	+1	provisional	p.R483H	0.330	79	0%	105	21%	39	15.3%	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMPfam_Glyco_transf_25
GLT25D1	79709	genome.wustl.edu	37	19	17691628	17691628	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024656.2	+1	provisional	p.G505	0.967	101	0%	130	26.9%	42	21.4%	-	-	-	HMMPfam_Glyco_transf_25
MAST3	23031	genome.wustl.edu	37	19	18258322	18258322	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015016.1	+1	validated	p.S1094	0.457	65	0%	97	33%	2	50%	-	-	-	NULL
RAB3A	5864	genome.wustl.edu	37	19	18309582	18309582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002866.4	-1	validated	p.E142G	1.000	232	0%	284	23.2%	6	16.6%	possibly_damaging(0.695)	deleterious(0)	deleterious(0.694)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
DDX49	54555	genome.wustl.edu	37	19	19033222	19033222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019070.4	+1	validated	p.R179C	0.075	26	0%	26	34.6%	49	40.8%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
LOC729991	729991	genome.wustl.edu	37	19	19291552	19291552	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145784.1	-1	validated	p.P115	0.195	31	0%	35	22.9%	4	25%	-	-	-	HMMPfam_NEP
ZNF93	81931	genome.wustl.edu	37	19	20026140	20026140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031218.3	+1	validated	p.H19Y	0.203	257	0%	210	23.3%	1	100%	possibly_damaging(0.916)	deleterious(0)	deleterious(0.811)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF726	730087	genome.wustl.edu	37	19	24102858	24102858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000322487	+1	known	p.R67Q	0.001	81	0%	153	22.2%	2	50%	possibly_damaging(0.818)	tolerated(0.22)	neutral(0.351)	NULL
GPI	2821	genome.wustl.edu	37	19	34857716	34857716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000175.3	+1	reviewed	p.R81Q	1.000	148	0%	199	22.6%	217	47.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PGI,superfamily_SSF53697
ZNF599	148103	genome.wustl.edu	37	19	35250452	35250452	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007248.2	-1	validated	p.T418	0.986	160	0%	105	29.5%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF792	126375	genome.wustl.edu	37	19	35449334	35449334	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175872.4	-1	validated	p.E475	0.905	170	0%	242	23.6%	5	40%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
GAPDHS	26330	genome.wustl.edu	37	19	36029508	36029508	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014364.4	+1	reviewed	p.H124	0.410	213	0%	233	31.8%	0	-	-	-	-	HMMPfam_Gp_dh_N,superfamily_NAD(P)-bd
MLL4	9757	genome.wustl.edu	37	19	36210845	36210845	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.R199Q	1.000	30	0%	62	37.1%	4	50%	unknown(0)	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36214082	36214082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.R970W	1.000	73	0%	92	27.2%	3	66.6%	probably_damaging(0.997)	-	-	HMMPfam_zf-CXXC
MLL4	9757	genome.wustl.edu	37	19	36220169	36220169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.H1630R	1.000	154	0%	204	25.5%	8	12.5%	possibly_damaging(0.484)	-	-	NULL
MLL4	9757	genome.wustl.edu	37	19	36229456	36229456	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014727.1	+1	reviewed	p.*2716R	1.000	76	0%	121	22.3%	29	20.6%	-	-	-	NULL
ARHGAP33	115703	genome.wustl.edu	37	19	36277904	36277904	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052948.3	+1	reviewed	p.A683	0.886	28	0%	39	20.5%	2	50%	-	-	-	NULL
NPHS1	4868	genome.wustl.edu	37	19	36339975	36339975	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004646.3	-1	reviewed	p.T305	0.000	35	0%	38	21.1%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
NFKBID	84807	genome.wustl.edu	37	19	36381357	36381357	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139239.1	-1	provisional	p.A214	0.324	98	0%	89	23.6%	1	100%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
ZNF382	84911	genome.wustl.edu	37	19	37117179	37117179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032825.3	+1	validated	p.R127H	0.137	36	0%	27	25.9%	0	-	benign(0.001)	tolerated(0.57)	neutral(0.006)	NULL
YIF1B	90522	genome.wustl.edu	37	19	38799459	38799459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039672.2	-1	validated	p.A171V	1.000	209	0%	279	18.6%	64	25%	benign(0.097)	deleterious(0.05)	neutral(0.353)	HMMPfam_YIF1
RYR1	6261	genome.wustl.edu	37	19	38993282	38993282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.H2584Y	1.000	52	0%	61	34.4%	0	-	possibly_damaging(0.947)	-	-	NULL
ACTN4	81	genome.wustl.edu	37	19	39214611	39214611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004924.3	+1	reviewed	p.L529P	1.000	47	0%	73	28.8%	158	34.1%	unknown(0)	deleterious(0)	-	HMMPfam_Spectrin,superfamily_Spectrin
DLL3	10683	genome.wustl.edu	37	19	39994863	39994863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016941.3	+1	reviewed	p.G269R	0.187	95	0%	130	24.6%	1	0%	benign(0.001)	tolerated(0.66)	neutral(0.003)	NULL
FCGBP	8857	genome.wustl.edu	37	19	40392424	40392424	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003890.2	-1	validated	p.L2694	0.957	210	0%	278	13.3%	3	0%	-	-	-	HMMPfam_C8
ZNF780B	163131	genome.wustl.edu	37	19	40553282	40553282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005851.2	-1	validated	p.D78Y	0.043	341	0%	188	21.8%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
CYP2B6	1555	genome.wustl.edu	37	19	41515236	41515236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000767.4	+1	reviewed	p.R253H	0.046	99	0%	50	26%	1	0%	possibly_damaging(0.909)	tolerated(0.1)	deleterious(0.648)	HMMPfam_p450,superfamily_Cytochrome_P450
CD79A	973	genome.wustl.edu	37	19	42383352	42383352	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001783.3	+1	reviewed	p.R124	0.005	42	0%	52	26.9%	14	0%	-	-	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ARHGEF1	9138	genome.wustl.edu	37	19	42396847	42396847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199002.1	+1	reviewed	p.R196W	0.061	33	0%	40	35%	15	6.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam
CIC	23152	genome.wustl.edu	37	19	42791797	42791797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015125.3	+1	validated	p.R228Q	1.000	88	0%	144	29.2%	13	38.4%	possibly_damaging(0.772)	deleterious(0)	deleterious(0.732)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
TMEM145	284339	genome.wustl.edu	37	19	42818842	42818842	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173633.2	+1	validated	p.S117	0.992	170	0%	164	24.4%	0	-	-	-	-	NULL
PSG9	5678	genome.wustl.edu	37	19	43762514	43762514	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002784.3	-1	validated	p.P361	0.005	370	0.3%	282	25.5%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ZNF428	126299	genome.wustl.edu	37	19	44112165	44112165	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182498.3	-1	validated	p.D57	0.978	11	0%	20	40%	100	43%	-	-	-	NULL
IRGC	56269	genome.wustl.edu	37	19	44222860	44222860	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019612.3	+1	validated	p.T50	0.000	21	0%	26	30.8%	0	-	-	-	-	HMMPfam_IIGP,superfamily_SSF52540
ZNF155	7711	genome.wustl.edu	37	19	44500670	44500670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003445.2	+1	validated	p.T221A	0.000	364	0%	215	25.6%	3	66.6%	benign(0.184)	tolerated(0.27)	neutral(0.051)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GPR4	2828	genome.wustl.edu	37	19	46095038	46095038	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005282.2	-1	validated	p.G29	0.996	36	0%	66	10.6%	5	0%	-	-	-	superfamily_SSF81321
EML2	24139	genome.wustl.edu	37	19	46124851	46124851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012155.1	-1	provisional	p.G296S	0.996	54	0%	76	31.6%	20	25%	benign(0.17)	tolerated(1)	neutral(0.015)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
PPP5C	5536	genome.wustl.edu	37	19	46891832	46891832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006247.2	+1	provisional	p.R400Q	1.000	122	0%	158	20.3%	71	36.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
ARHGAP35	2909	genome.wustl.edu	37	19	47423517	47423517	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.R529*	0.998	152	0%	81	21%	4	25%	-	-	-	HMMPfam_FF,HMMSmart_SM00441
ARHGAP35	2909	genome.wustl.edu	37	19	47424519	47424519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.R863C	1.000	336	0.3%	197	25.9%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZC3H4	23211	genome.wustl.edu	37	19	47570667	47570667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015168.1	-1	validated	p.R953Q	0.537	25	0%	53	24.5%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZC3H4	23211	genome.wustl.edu	37	19	47597319	47597319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015168.1	-1	validated	p.D134N	1.000	139	0%	124	30.6%	10	20%	unknown(0)	tolerated(0.12)	-	NULL
KPTN	11133	genome.wustl.edu	37	19	47984087	47984087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007059.2	-1	validated	p.E177K	0.997	81	0%	161	19.3%	13	7.6%	benign(0.011)	tolerated(0.79)	neutral(0.002)	NULL
EHD2	30846	genome.wustl.edu	37	19	48229355	48229355	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014601.3	+1	reviewed	p.L263	0.804	57	0%	80	22.5%	6	0%	-	-	-	NULL
LIG1	3978	genome.wustl.edu	37	19	48636294	48636294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000234.1	-1	reviewed	p.R557H	1.000	204	0%	218	20.6%	21	9.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_ligase_A_M,superfamily_DNA ligase/mRNA capping enzyme catalytic domain
LMTK3	114783	genome.wustl.edu	37	19	49004310	49004310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080434.1	-1	provisional	p.R394H	1.000	33	0%	44	45.5%	3	66.6%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
FUT1	2523	genome.wustl.edu	37	19	49254343	49254343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000148.3	-1	reviewed	p.A66T	0.000	65	0%	110	23.6%	1	0%	benign(0)	tolerated(0.93)	-	HMMPfam_Glyco_transf_11
BAX	581	genome.wustl.edu	37	19	49464798	49464798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138761.3	+1	reviewed	p.L162I	1.000	40	0%	50	28%	119	13.4%	benign(0.02)	tolerated(0.57)	neutral(0.007)	PatternScan_BH2,superfamily_Bcl-2 inhibitors of programmed cell death
GYS1	2997	genome.wustl.edu	37	19	49472705	49472705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002103.4	-1	reviewed	p.R685Q	1.000	37	0%	34	23.5%	34	2.9%	possibly_damaging(0.951)	tolerated(0.19)	neutral(0.444)	NULL
TEAD2	8463	genome.wustl.edu	37	19	49844625	49844625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003598.1	-1	provisional	p.E434K	1.000	130	0%	183	28.4%	83	38.5%	possibly_damaging(0.906)	deleterious(0.01)	deleterious(0.765)	HMMPfam_TEA
RPL13A	23521	genome.wustl.edu	37	19	49994115	49994115	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012423.2	+1	reviewed	p.Y112	0.106	46	0%	68	25%	1555	38.5%	-	-	-	HMMPfam_Ribosomal_L13,superfamily_Ribosomal_L13
PRR12	57479	genome.wustl.edu	37	19	50123627	50123627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020719.1	+1	validated	p.R1839H	1.000	152	0%	166	19.3%	30	16.6%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
NUP62	23636	genome.wustl.edu	37	19	50411513	50411513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012346.3	-1	reviewed	p.R518W	1.000	83	0%	107	23.4%	50	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYH14	79784	genome.wustl.edu	37	19	50771581	50771581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077186.1	+1	reviewed	p.R964H	0.984	102	0%	136	19.9%	44	52.2%	possibly_damaging(0.771)	tolerated(0.15)	deleterious(0.527)	NULL
SHANK1	50944	genome.wustl.edu	37	19	51165489	51165489	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016148.2	-1	validated	p.S2073	0.027	40	0%	68	29.4%	0	-	-	-	-	NULL
SIGLEC6	946	genome.wustl.edu	37	19	52023366	52023366	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001245.5	-1	validated	p.T444	0.000	299	0%	149	21.5%	0	-	-	-	-	NULL
ZNF175	7728	genome.wustl.edu	37	19	52084665	52084665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007147.2	+1	validated	p.V32M	0.918	390	0%	209	24.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF610	162963	genome.wustl.edu	37	19	52869650	52869650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173530.2	+1	validated	p.A340V	0.999	170	0%	215	30.7%	8	0%	possibly_damaging(0.849)	deleterious(0)	deleterious(0.770)	superfamily_C2H2 and C2HC zinc fingers
CNOT3	4849	genome.wustl.edu	37	19	54656051	54656051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014516.2	+1	validated	p.L565P	1.000	63	0%	99	23.2%	52	40.3%	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
NLRP7	199713	genome.wustl.edu	37	19	55450501	55450501	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127255.1	-1	reviewed	p.P562	0.002	134	0%	171	25.1%	1	0%	-	-	-	NULL
ZNF418	147686	genome.wustl.edu	37	19	58439283	58439283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133460.1	-1	provisional	p.A89V	0.000	145	0%	142	28.2%	1	100%	benign(0.104)	tolerated(0.1)	neutral(0.294)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
SIRPA	140885	genome.wustl.edu	37	20	1895791	1895791	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040022.1	+1	reviewed	p.S42	0.000	162	0.6%	186	26.9%	4	75%	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
TMC2	117532	genome.wustl.edu	37	20	2597814	2597814	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080751.2	+1	validated	p.N679	1.000	382	0%	160	20%	0	-	-	-	-	HMMPfam_TMC
IDH3B	3420	genome.wustl.edu	37	20	2639473	2639473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006899.2	-1	reviewed	p.R361Q	1.000	148	0%	127	27.6%	110	45.4%	benign(0.127)	tolerated(0.33)	neutral(0.035)	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like
SLC4A11	83959	genome.wustl.edu	37	20	3211642	3211642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032034.3	-1	reviewed	p.A385T	1.000	503	0%	610	24.1%	12	25%	probably_damaging(0.956)	tolerated(0.14)	deleterious(0.649)	HMMPfam_HCO3_cotransp
SLC4A11	83959	genome.wustl.edu	37	20	3214882	3214882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032034.3	-1	reviewed	p.V140I	1.000	177	0%	218	27.5%	21	57.1%	benign(0)	tolerated(0.33)	neutral(0.024)	superfamily_Phoshotransferase/anion transport protein
BTBD3	22903	genome.wustl.edu	37	20	11899025	11899025	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014962.2	+1	validated	p.N34	0.930	191	0%	72	11.1%	2	0%	-	-	-	NULL
ESF1	51575	genome.wustl.edu	37	20	13698128	13698128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016649.3	-1	provisional	p.E717K	1.000	439	0.2%	185	30.8%	5	40%	probably_damaging(0.971)	tolerated(0.13)	deleterious(0.665)	NULL
C20orf26	26074	genome.wustl.edu	37	20	20055837	20055837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015585.3	+1	validated	p.V126M	0.967	348	0%	141	24.1%	1	0%	probably_damaging(0.992)	tolerated(0.13)	deleterious(0.700)	NULL
PYGB	5834	genome.wustl.edu	37	20	25260900	25260900	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002862.3	+1	reviewed	e10-2	0.995	174	0%	220	28.2%	3	100%	-	-	-	-
DEFB124	245937	genome.wustl.edu	37	20	30053386	30053386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037500.1	-1	provisional	p.L47M	1.000	277	0%	342	18.7%	1	100%	benign(0.029)	tolerated(0.31)	neutral(0.029)	NULL
XKR7	343702	genome.wustl.edu	37	20	30556401	30556401	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011718.1	+1	provisional	p.T141	1.000	23	0%	49	18.4%	0	-	-	-	-	HMMPfam_XK-related
NCOA6	23054	genome.wustl.edu	37	20	33337236	33337236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014071.2	-1	reviewed	p.R921Q	1.000	170	0%	218	14.7%	4	0%	possibly_damaging(0.939)	deleterious(0.01)	deleterious(0.790)	NULL
MYH7B	57644	genome.wustl.edu	37	20	33588658	33588658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020884.3	+1	reviewed	p.R1798W	1.000	174	0%	222	25.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_tail_1
GDF5	8200	genome.wustl.edu	37	20	34021940	34021940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000557.2	-1	reviewed	p.E425K	1.000	182	0%	197	19.3%	4	25%	possibly_damaging(0.559)	deleterious(0.01)	deleterious(0.596)	HMMPfam_TGF_beta,HMMSmart_TGFB,PatternScan_TGF_BETA_1,superfamily_SSF57501
EPB41L1	2036	genome.wustl.edu	37	20	34765928	34765928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012156.2	+1	reviewed	p.L133I	1.000	138	0%	103	18.4%	5	20%	benign(0.249)	deleterious(0.02)	neutral(0.409)	HMMPfam_FERM_N,HMMSmart_SM00295,superfamily_Ubiquitin-like
EPB41L1	2036	genome.wustl.edu	37	20	34806863	34806863	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451082	+1	known	p.R206Q	1.000	88	0%	39	15.4%	24	25%	-	-	-	HMMPfam_4_1_CTD
SOGA1	140710	genome.wustl.edu	37	20	35431408	35431408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199181.2	-1	validated	p.S826P	1.000	82	0%	65	24.6%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TTI1	9675	genome.wustl.edu	37	20	36625349	36625349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014657.1	-1	predicted	p.R934C	0.776	108	0%	58	24.1%	8	37.5%	benign(0.001)	tolerated(0.18)	neutral(0.056)	superfamily_ARM-type_fold
CHD6	84181	genome.wustl.edu	37	20	40033866	40033866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032221.3	-1	reviewed	p.M2505I	1.000	92	0%	88	28.4%	9	55.5%	benign(0.004)	deleterious(0.02)	neutral(0.383)	NULL
WFDC8	90199	genome.wustl.edu	37	20	44180670	44180670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130896.2	-1	reviewed	p.R241C	0.000	148	0%	42	28.6%	0	-	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	superfamily_WAP
ZSWIM3	140831	genome.wustl.edu	37	20	44505731	44505733	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080752.2	+1	validated	p.K179in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ELMO2	63916	genome.wustl.edu	37	20	45023110	45023110	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133171.3	-1	reviewed	p.P4	0.832	311	0%	110	33.6%	6	50%	-	-	-	NULL
PREX1	57580	genome.wustl.edu	37	20	47273606	47273606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020820.3	-1	reviewed	p.R699C	1.000	93	0%	99	12.1%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00228,superfamily_PDZ domain-like
ADNP	23394	genome.wustl.edu	37	20	49510578	49510578	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015339.2	-1	reviewed	p.R225*	1.000	205	0%	121	20.7%	12	58.3%	-	-	-	HMMSmart_ZnF_C2H2
NFATC2	4773	genome.wustl.edu	37	20	50140026	50140026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173091.2	-1	reviewed	p.R252W	1.000	31	0%	53	32.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DOK5	55816	genome.wustl.edu	37	20	53205049	53205049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018431.3	+1	reviewed	p.V68I	0.998	221	0%	74	24.3%	0	-	benign(0.001)	tolerated(0.49)	neutral(0.011)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
GNAS	2778	genome.wustl.edu	37	20	57429114	57429114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080425.2	+1	reviewed	p.R265H	0.397	9	0.000	23	0.217	0	-	unknown(0)	tolerated(0.06)	-	NULL
GNAS	2778	genome.wustl.edu	37	20	57484249	57484249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080425.2	+1	reviewed	p.A831V	0.750	292	0%	132	25.8%	1427	41.6%	benign(0)	tolerated(0.1)	neutral(0.286)	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
TUBB1	81027	genome.wustl.edu	37	20	57598887	57598887	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030773.2	+1	validated	p.I135	0.024	116	0%	207	27.5%	0	-	-	-	-	HMMPfam_Tubulin,superfamily_Tubulin_FtsZ
SYCP2	10388	genome.wustl.edu	37	20	58444953	58444953	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014258.2	-1	reviewed	p.S1214T	0.000	326	0%	70	22.9%	0	-	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
NTSR1	4923	genome.wustl.edu	37	20	61341023	61341023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002531.2	+1	reviewed	p.T155M	0.999	51	0%	97	20.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OGFR	11054	genome.wustl.edu	37	20	61444139	61444139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007346.2	+1	reviewed	p.R391L	0.000	41	0%	58	31%	39	41%	benign(0.011)	tolerated(0.22)	neutral(0.043)	NULL
BIRC7	79444	genome.wustl.edu	37	20	61869289	61869289	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139317.1	+1	reviewed	p.Y128	0.040	43	0%	47	31.9%	3	33.3%	-	-	-	HMMPfam_BIR,HMMSmart_SM00238,PatternScan_BIR_REPEAT_1,superfamily_Inhibitor of apoptosis (IAP) repeat
PRIC285	85441	genome.wustl.edu	37	20	62195168	62195168	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037335.2	-1	reviewed	p.T1669	0.017	12	0%	32	21.9%	5	40%	-	-	-	HMMPfam_RNB,PatternScan_RIBONUCLEASE_II
PRIC285	85441	genome.wustl.edu	37	20	62198704	62198704	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037335.2	-1	reviewed	p.A669	0.431	28	0%	31	16.1%	4	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF512B	57473	genome.wustl.edu	37	20	62598119	62598119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020713.1	-1	provisional	p.R137C	1.000	81	0%	158	11.4%	7	42.8%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
BACH1	571	genome.wustl.edu	37	21	30699586	30699588	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	GAT	GAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001186.2	+1	reviewed	p.D482in_frame_del	0.550:0.496:0.010	-	-	-	-	-	-	-	-	-	NULL
KRTAP19-1	337882	genome.wustl.edu	37	21	31852624	31852624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181607.1	-1	provisional	p.G5S	0.407	484	0%	126	13.5%	0	-	unknown(0)	-	-	NULL
HUNK	30811	genome.wustl.edu	37	21	33371337	33371337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014586.1	+1	validated	p.R662Q	0.993	50	0%	41	24.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
URB1	9875	genome.wustl.edu	37	21	33739048	33739048	+	Missense_Mutation	SNP	G	G	A	rs187485893	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014825.2	-1	validated	p.P405L	1.000	140	0%	74	20.3%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
IFNGR2	3460	genome.wustl.edu	37	21	34793921	34793921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005534.3	+1	reviewed	p.R114H	0.018	269	0%	143	23.1%	110	34.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Fibronectin type III
ETS2	2114	genome.wustl.edu	37	21	40194717	40194717	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005239.4	+1	validated	p.Y438	1.000	155	0%	174	22.4%	44	43.1%	-	-	-	HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785
PDE9A	5152	genome.wustl.edu	37	21	44180449	44180449	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002606.2	+1	reviewed	p.H303	0.120	68	0%	69	27.5%	13	61.5%	-	-	-	superfamily_HD-domain/PDEase-like
TRAPPC10	7109	genome.wustl.edu	37	21	45511892	45511892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003274.4	+1	reviewed	p.D987N	0.633	342	0%	303	33.7%	15	46.6%	benign(0.174)	tolerated(0.42)	neutral(0.030)	NULL
TRAPPC10	7109	genome.wustl.edu	37	21	45522765	45522765	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003274.4	+1	reviewed	p.P1151	0.021	176	0%	163	16%	13	23%	-	-	-	NULL
COL18A1	80781	genome.wustl.edu	37	21	46888239	46888239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130444.2	+1	reviewed	p.V479I	0.000	41	0%	65	27.7%	131	43.5%	unknown(0)	deleterious(0.04)	-	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases
SLC19A1	6573	genome.wustl.edu	37	21	46951346	46951346	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000417954	-1	known	p.R37H	0.000	27	0%	41	26.8%	2	50%	-	-	-	HMMPfam_Folate_carrier
COL6A2	1292	genome.wustl.edu	37	21	47538548	47538548	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001849.3	+1	reviewed	p.G379	0.999	32	0%	68	23.5%	26	0%	-	-	-	HMMPfam_Collagen
LSS	4047	genome.wustl.edu	37	21	47627345	47627345	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001438.2	-1	reviewed	p.A488	1.000	134	0%	110	26.4%	2	50%	-	-	-	superfamily_Terp_cyc_toroid
CCT8L2	150160	genome.wustl.edu	37	22	17072668	17072668	+	Missense_Mutation	SNP	G	G	A	rs147789853	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014406.4	-1	validated	p.T258M	0.002	216	0%	201	20.9%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
IL17RA	23765	genome.wustl.edu	37	22	17589458	17589458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014339.4	+1	reviewed	p.G450D	1.000	33	0%	40	27.5%	1	100%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_SEFIR
GNB1L	54584	genome.wustl.edu	37	22	19776405	19776405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_053004.2	-1	validated	p.A271T	0.999	29	0%	23	39.1%	12	41.6%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
DGCR8	54487	genome.wustl.edu	37	22	20073611	20073611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022720.5	+1	validated	p.T42M	1.000	63	0%	82	34.1%	7	57.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LZTR1	8216	genome.wustl.edu	37	22	21345967	21345967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006767.3	+1	reviewed	p.P281L	0.999	33	0%	54	24.1%	6	66.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00612,superfamily_Galactose oxidase central domain
LZTR1	8216	genome.wustl.edu	37	22	21347168	21347168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006767.3	+1	reviewed	p.R412H	1.000	97	0%	111	29.7%	7	14.2%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
SLC7A4	6545	genome.wustl.edu	37	22	21385806	21385806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004173.2	-1	validated	p.T99M	0.846	31	0%	68	23.5%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_AA_permease
HIC2	23119	genome.wustl.edu	37	22	21800951	21800951	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015094.2	+1	validated	p.Y589	0.997	69	1.4%	73	26%	1	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PRAME	23532	genome.wustl.edu	37	22	22899240	22899240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006115.3	-1	reviewed	p.R5C	0.001	198	0%	186	22%	26	50%	probably_damaging(0.971)	-	-	NULL
FAM211B	388886	genome.wustl.edu	37	22	24981971	24981971	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207644.2	-1	validated	p.Y277	0.995	78	0%	67	38.8%	22	27.2%	-	-	-	superfamily_RNI-like
MYO18B	84700	genome.wustl.edu	37	22	26351222	26351222	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032608.5	+1	reviewed	p.Q2016	1.000	57	0%	36	16.7%	0	-	-	-	-	NULL
KREMEN1	83999	genome.wustl.edu	37	22	29521324	29521324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032045.4	+1	reviewed	p.A184V	1.000	193	0%	71	19.7%	2	50%	possibly_damaging(0.575)	deleterious(0.01)	deleterious(0.603)	HMMPfam_WSC
NF2	4771	genome.wustl.edu	37	22	30070881	30070881	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000268.3	+1	reviewed	p.R466Q	1.000	60	0%	27	44.4%	23	13%	probably_damaging(0.963)	tolerated(0.38)	neutral(0.423)	HMMPfam_ERM
SEC14L4	284904	genome.wustl.edu	37	22	30887874	30887874	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174977.3	-1	reviewed	p.R286	0.032	100	0%	74	23%	0	-	-	-	-	superfamily_Supernatant protein factor (SPF) C-terminal domain
INPP5J	27124	genome.wustl.edu	37	22	31529154	31529154	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002837.1	+1	validated	p.A387V	1.000	169	0.6%	207	24.6%	7	57.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_Exo_endo_phos
LIMK2	3985	genome.wustl.edu	37	22	31661934	31661934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031801.1	+1	reviewed	p.R265H	1.000	136	0%	145	21.4%	45	51.1%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
LIMK2	3985	genome.wustl.edu	37	22	31663886	31663886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031801.1	+1	reviewed	p.R397H	1.000	75	0%	69	14.5%	38	50%	probably_damaging(1)	tolerated(0.73)	deleterious(0.501)	superfamily_Kinase_like,HMMPfam_Pkinase
DRG1	4733	genome.wustl.edu	37	22	31819384	31819384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004147.3	+1	validated	p.V234A	1.000	193	1%	78	26.9%	41	43.9%	possibly_damaging(0.584)	deleterious(0)	deleterious(0.645)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SFI1	9814	genome.wustl.edu	37	22	31924815	31924815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007467.1	+1	validated	p.T78A	0.031	131	0%	72	20.8%	4	75%	possibly_damaging(0.815)	deleterious(0.02)	deleterious(0.691)	NULL
LARGE	9215	genome.wustl.edu	37	22	33828182	33828182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004737.4	-1	reviewed	p.R286H	0.999	312	0%	168	26.2%	7	42.8%	possibly_damaging(0.933)	deleterious(0.01)	deleterious(0.784)	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
RBFOX2	23543	genome.wustl.edu	37	22	36177771	36177771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082578.1	-1	reviewed	p.T162I	1.000	227	0%	200	22.5%	18	38.8%	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	NULL
APOL3	80833	genome.wustl.edu	37	22	36537945	36537945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145640.2	-1	reviewed	p.R171H	0.000	250	0%	164	23.8%	31	32.2%	probably_damaging(0.999)	tolerated(0.35)	deleterious(0.511)	HMMPfam_ApoL
APOL1	8542	genome.wustl.edu	37	22	36653378	36653378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145343.2	+1	reviewed	p.V54I	0.000	276	0%	149	22.8%	443	48.9%	possibly_damaging(0.737)	tolerated(0.17)	neutral(0.329)	NULL
MPST	4357	genome.wustl.edu	37	22	37420424	37420424	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021126.4	+1	reviewed	p.G76	0.884	5	0.000	9	0.444	36	47.2%	-	-	-	PatternScan_RHODANESE_1,HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
PLA2G6	8398	genome.wustl.edu	37	22	38536013	38536013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003560.2	-1	reviewed	p.S258L	0.406	157	0%	114	20.2%	10	30%	benign(0.006)	tolerated(0.41)	neutral(0.015)	superfamily_Ankyrin repeat
CACNA1I	8911	genome.wustl.edu	37	22	40066194	40066194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021096.3	+1	reviewed	p.R1449H	0.998	323	0%	404	26%	0	-	probably_damaging(0.997)	tolerated(0.16)	deleterious(0.526)	NULL
GRAP2	9402	genome.wustl.edu	37	22	40364147	40364147	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004810.2	+1	reviewed	p.S187	0.028	57	0%	40	25%	5	0%	-	-	-	NULL
MCHR1	2847	genome.wustl.edu	37	22	41075455	41075455	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005297.3	+1	reviewed	p.S2	1.000	53	0%	30	20%	0	-	-	-	-	NULL
XPNPEP3	63929	genome.wustl.edu	37	22	41278091	41278091	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022098.2	+1	validated	p.R167*	0.999	124	0%	59	23.7%	1	0%	-	-	-	HMMPfam_AMP_N,superfamily_Creatinase/prolidase N-terminal domain
CHADL	150356	genome.wustl.edu	37	22	41631219	41631219	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138481.1	-1	validated	p.K731R	0.107	96	0%	129	30.2%	9	33.3%	possibly_damaging(0.485)	tolerated(0.61)	neutral(0.165)	NULL
ZC3H7B	23264	genome.wustl.edu	37	22	41738582	41738582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017590.4	+1	reviewed	p.A416V	1.000	136	0%	151	21.9%	14	14.2%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
TCF20	6942	genome.wustl.edu	37	22	42609465	42609465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005650.1	-1	reviewed	p.R616Q	0.733	86	0%	77	20.8%	11	81.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SCUBE1	80274	genome.wustl.edu	37	22	43623494	43623494	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173050.2	-1	validated	p.E365K	1.000	101	0%	98	23.5%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196
TTC38	55020	genome.wustl.edu	37	22	46684374	46684374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017931.2	+1	validated	p.S324N	0.664	116	0%	117	23.1%	27	25.9%	benign(0.045)	tolerated(0.42)	neutral(0.017)	NULL
GRAMD4	23151	genome.wustl.edu	37	22	47069574	47069574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015124.2	+1	validated	p.T416M	0.992	26	0%	51	35.3%	27	44.4%	probably_damaging(0.977)	tolerated(0.11)	deleterious(0.691)	NULL
ALG12	79087	genome.wustl.edu	37	22	50302892	50302892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000492791	-1	known	p.G100E	0.054	174	0%	215	26%	27	44.4%	-	-	-	HMMPfam_Glyco_transf_22
NCAPH2	29781	genome.wustl.edu	37	22	50956564	50956564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152299.3	+1	reviewed	p.R168H	0.997	124	0%	183	25.7%	19	36.8%	possibly_damaging(0.939)	tolerated(0.14)	deleterious(0.634)	HMMPfam_DUF1032
ENSG00000215615	0	genome.wustl.edu	37	GL000218.1	39018	39018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000400681	-1	known	p.A149T	NULL	112	0%	138	20.3%	0	-	possibly_damaging(0.799)	deleterious(0.01)	deleterious(0.707)	NULL
MXRA5	25878	genome.wustl.edu	37	X	3242625	3242625	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015419.3	-1	reviewed	p.C367	0.869	235	0.4%	173	21.4%	2	0%	-	-	-	NULL
TBL1X	6907	genome.wustl.edu	37	X	9659626	9659626	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001139466.1	+1	reviewed	p.H208	0.077	321	0%	363	24.5%	3	0%	-	-	-	NULL
MAP3K15	389840	genome.wustl.edu	37	X	19390900	19390900	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001671.3	-1	validated	p.S468	0.000	82	0%	59	30.5%	0	-	-	-	-	NULL
FAM48B1	100130302	genome.wustl.edu	37	X	24383089	24383089	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136234.1	+1	inferred	p.A738T	0.000	112	0%	141	21.3%	0	-	-	-	-	NULL
FAM47A	158724	genome.wustl.edu	37	X	34149161	34149161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203408.3	-1	validated	p.R412H	0.003	161	0%	183	28.4%	0	-	benign(0.142)	tolerated(0.08)	neutral(0.312)	NULL
RBM10	8241	genome.wustl.edu	37	X	47030498	47030498	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005676.3	+1	reviewed	p.T91	0.996	15	0%	21	28.6%	10	40%	-	-	-	NULL
RBM10	8241	genome.wustl.edu	37	X	47044713	47044713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005676.3	+1	reviewed	p.E705K	0.989	184	0%	220	23.2%	55	81.8%	probably_damaging(0.994)	tolerated(0.13)	deleterious(0.705)	NULL
SSX6	280657	genome.wustl.edu	37	X	47972581	47972581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000304314	+1	known	p.R137C	0.000	394	0%	593	17.4%	0	-	benign(0.002)	tolerated(0.15)	neutral(0.241)	NULL
GATA1	2623	genome.wustl.edu	37	X	48649711	48649711	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002049.3	+1	reviewed	p.D65	0.946	46	0%	20	40%	0	-	-	-	-	NULL
GATA1	2623	genome.wustl.edu	37	X	48650870	48650870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002049.3	+1	reviewed	p.R247C	1.000	100	0%	117	26.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00401
WDR45	11152	genome.wustl.edu	37	X	48933022	48933022	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007075.3	-1	reviewed	e8+1	1.000	109	0%	173	19.7%	3	100%	-	-	-	-
PAGE1	8712	genome.wustl.edu	37	X	49455857	49455857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003785.3	-1	reviewed	p.A96V	0.000	325	0%	145	18.6%	0	-	possibly_damaging(0.906)	-	-	HMMPfam_GAGE
KDM5C	8242	genome.wustl.edu	37	X	53243889	53243889	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004187.3	-1	reviewed	p.C368	1.000	298	0%	204	24%	20	45%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
IQSEC2	23096	genome.wustl.edu	37	X	53264277	53264277	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111125.1	-1	validated	p.P1197	0.963	93	0%	100	19%	2	50%	-	-	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53563593	53563593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.A4058V	1.000	168	0%	111	19.8%	81	40.7%	unknown(0)	deleterious(0)	-	HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
HUWE1	10075	genome.wustl.edu	37	X	53616678	53616678	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427052	-1	known	p.V464I	0.960	529	0%	301	25.2%	11	0%	-	-	-	superfamily_ARM repeat
AR	367	genome.wustl.edu	37	X	66765161	66765161	+	Missense_Mutation	SNP	A	A	T	rs5902610		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000044.2	+1	reviewed	p.Q58L	0.920	13	0%	19	31.6%	1	0%	benign(0.386)	deleterious(0.01)	deleterious(0.529)	HMMPfam_Androgen_recep
GDPD2	54857	genome.wustl.edu	37	X	69644849	69644849	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017711.3	+1	reviewed	p.P5	0.025	53	0%	45	20%	0	-	-	-	-	NULL
MED12	9968	genome.wustl.edu	37	X	70360551	70360551	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444034	+1	known	p.A233V	0.771	165	0%	177	22.6%	21	76.1%	-	-	-	NULL
NONO	4841	genome.wustl.edu	37	X	70516427	70516427	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418921	+1	known	p.L83P	1.000	173	0%	123	18.7%	145	0%	-	-	-	HMMPfam_NOPS,superfamily_RNA-binding domain RBD
ACRC	93953	genome.wustl.edu	37	X	70823607	70823607	+	Silent	SNP	C	C	T	rs184215123	by1000genomes	TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052957.4	+1	validated	p.D160	0.358	380	0%	263	29.3%	0	-	-	-	-	NULL
MAGEE2	139599	genome.wustl.edu	37	X	75004197	75004198	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138703.4	-1	validated	p.F230fs	0.001:0.003	-	-	-	-	-	-	-	-	-	HMMPfam_MAGE
MAGEE1	57692	genome.wustl.edu	37	X	75649286	75649286	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020932.2	+1	reviewed	p.P321	0.000	25	0%	27	18.5%	0	-	-	-	-	NULL
PGAM4	441531	genome.wustl.edu	37	X	77225074	77225074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001029891.2	-1	reviewed	p.R21H	1.000	100	0%	104	23.1%	0	-	benign(0.267)	deleterious(0)	deleterious(0.473)	HMMPfam_PGAM,superfamily_SSF53254
BRWD3	254065	genome.wustl.edu	37	X	79980545	79980545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153252.4	-1	reviewed	p.V470I	1.000	195	0%	93	16.1%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMPfam_WD40
SRPX2	27286	genome.wustl.edu	37	X	99921756	99921756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014467.2	+1	reviewed	p.R263C	1.000	72	0%	42	11.9%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Complement_control_module
ARMCX1	51309	genome.wustl.edu	37	X	100808643	100808643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016608.1	+1	reviewed	p.R244C	1.000	129	0%	125	23.2%	1	0%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_DUF634,superfamily_ARM-type_fold
MORC4	79710	genome.wustl.edu	37	X	106184836	106184836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024657.4	-1	reviewed	p.R896H	1.000	197	0%	94	10.6%	9	11.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RBMXL3	139804	genome.wustl.edu	37	X	114425840	114425840	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145346.1	+1	validated	p.S612	0.995	95	0%	196	30.6%	0	-	-	-	-	NULL
ZCCHC12	170261	genome.wustl.edu	37	X	117959892	117959892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173798.2	+1	provisional	p.R229W	0.002	61	0%	103	21.4%	0	-	possibly_damaging(0.926)	deleterious(0.02)	deleterious(0.758)	NULL
ENSG00000223499	0	genome.wustl.edu	37	X	118207882	118207882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000419982	+1	known	p.A199T	0.011	39	0%	151	23.2%	0	-	-	-	-	NULL
UBE2A	7319	genome.wustl.edu	37	X	118717208	118717208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003336.2	+1	reviewed	p.R150H	1.000	151	0%	138	18.8%	66	72.7%	benign(0.396)	tolerated(0.11)	neutral(0.399)	HMMSmart_SM00212,superfamily_UBC-like
MRRFP1	286423	genome.wustl.edu	37	X	122250823	122250823	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000435941	-1	known	p.*263R	0.894	90	0%	56	19.6%	0	-	-	-	-	NULL
ZNF280C	55609	genome.wustl.edu	37	X	129377604	129377604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017666.4	-1	validated	p.S105L	0.001	205	0%	92	22.8%	0	-	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
IGSF1	3547	genome.wustl.edu	37	X	130410118	130410118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001555.4	-1	reviewed	p.A905T	0.982	112	0%	64	31.2%	0	-	probably_damaging(0.982)	tolerated(0.05)	deleterious(0.772)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
TFDP3	51270	genome.wustl.edu	37	X	132351528	132351528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016521.2	-1	reviewed	p.V254M	1.000	239	0%	313	33.9%	0	-	benign(0.045)	deleterious(0)	neutral(0.447)	HMMPfam_DP
F9	2158	genome.wustl.edu	37	X	138644024	138644024	+	Missense_Mutation	SNP	A	A	C	rs137852262		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000133.3	+1	reviewed	p.M394L	1.000	254	0%	138	32.6%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
MAGEC1	9947	genome.wustl.edu	37	X	140993698	140993698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005462.4	+1	reviewed	p.A170T	0.931	119	0%	185	27%	0	-	unknown(0)	tolerated(0.08)	-	NULL
FMR1	2332	genome.wustl.edu	37	X	147026511	147026511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002024.5	+1	reviewed	p.R532W	0.975	337	0%	141	23.4%	27	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CXorf40A	91966	genome.wustl.edu	37	X	148627337	148627337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178124.4	+1	validated	p.R54Q	0.000	286	0%	219	24.2%	18	0%	benign(0.007)	tolerated(0.19)	neutral(0.050)	NULL
MTM1	4534	genome.wustl.edu	37	X	149839986	149839986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000252.2	+1	reviewed	p.A577V	1.000	249	0%	124	25%	6	33.3%	benign(0.016)	tolerated(0.2)	neutral(0.050)	NULL
ZFP92	139735	genome.wustl.edu	37	X	152686433	152686433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136273.1	+1	validated	p.R200C	0.987	92	0%	271	18.1%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ATP2B3	492	genome.wustl.edu	37	X	152830438	152830438	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001344.2	+1	reviewed	p.P1073	0.000	51	0%	67	34.3%	0	-	-	-	-	NULL
PLXNB3	5365	genome.wustl.edu	37	X	153040441	153040441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000411613	+1	known	p.A52V	0.000	21	0%	38	26.3%	3	66.6%	unknown(0)	-	-	HMMPfam_Plexin_cytopl
PLXNB3	5365	genome.wustl.edu	37	X	153040797	153040797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005393.2	+1	reviewed	p.T1425A	1.000	51	0%	60	16.7%	10	0%	unknown(0)	tolerated(0.27)	-	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
SRPK3	26576	genome.wustl.edu	37	X	153046623	153046623	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430541	+1	known	p.R18Q	0.005	9	0.000	19	0.368	0	-	-	-	-	NULL
IDH3G	3421	genome.wustl.edu	37	X	153051850	153051850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Y-01	TCGA-B5-A11Y-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004135.2	-1	reviewed	p.A327T	1.000	375	0.3%	540	21.5%	177	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Iso_dh,superfamily_SSF53659
