Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CELA3A	10136	genome.wustl.edu	37	1	22336306	22336306	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005747.4	+1	reviewed	p.T251P	1.000	190	0%	134	41.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
C1orf94	84970	genome.wustl.edu	37	1	34684296	34684296	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134734.1	+1	validated	p.S577	0.002	264	0%	255	48.2%	0	-	-	-	-	NULL
INPP5B	3633	genome.wustl.edu	37	1	38331538	38331538	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005540.2	-1	reviewed	p.A803	0.002	165	0%	207	41.5%	15	40%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
LRRC7	57554	genome.wustl.edu	37	1	70503836	70503836	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020794.2	+1	validated	p.L739I	1.000	219	0%	74	40.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PHTF1	10745	genome.wustl.edu	37	1	114248691	114248691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006608.2	-1	validated	p.R498C	0.986	109	0%	50	48%	19	57.8%	probably_damaging(0.983)	tolerated(0.06)	deleterious(0.752)	NULL
RPS7	6201	genome.wustl.edu	37	2	3623448	3623448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011.3	+1	reviewed	p.Q39H	1.000	132	0%	148	42.6%	1445	49.2%	benign(0.009)	tolerated(0.11)	neutral(0.272)	HMMPfam_Ribosomal_S7e
TTN	7273	genome.wustl.edu	37	2	179596508	179596508	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.K4454	1.000	79	0%	53	34%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
PTPRN	5798	genome.wustl.edu	37	2	220172184	220172184	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002846.2	-1	reviewed	p.R88*	1.000	106	0%	158	45.6%	0	-	-	-	-	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266124	41266124	+	Missense_Mutation	SNP	A	A	G	rs121913412	byCluster	TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.T41A	1.000	123	0%	49	44.9%	312	42.9%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
C3orf75	54859	genome.wustl.edu	37	3	47543198	47543198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031703.2	-1	validated	p.A156V	0.741	152	0%	168	47.6%	47	48.9%	benign(0.01)	tolerated(0.36)	neutral(0.021)	HMMPfam_DUF2348
EIF4A2	1974	genome.wustl.edu	37	3	186505363	186505368	+	In_Frame_Del	DEL	CTGACT	CTGACT	-	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	CTGACT	CTGACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001967.3	+1	validated	p.TDL330in_frame_delM	1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
CTNND2	1501	genome.wustl.edu	37	5	11098726	11098726	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001332.2	-1	validated	p.A866	0.971	204	0%	78	37.2%	2	0%	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
PIK3R1	5295	genome.wustl.edu	37	5	67591119	67591120	+	In_Frame_Ins	INS	-	-	CCG	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.572in_frame_insR	1.000:0.996	-	-	-	-	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67591122	67591122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.Q572R	1.000	320	0%	161	39.8%	71	5.6%	probably_damaging(0.985)	tolerated(0.08)	deleterious(0.732)	NULL
FBN2	2201	genome.wustl.edu	37	5	127685051	127685051	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001999.3	-1	reviewed	p.R993G	1.000	153	0%	88	40.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00179,superfamily_TB module/8-cys domain,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA
H2AFY	9555	genome.wustl.edu	37	5	134696232	134696232	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138610.2	-1	reviewed	p.D181	0.150	188	0%	104	39.4%	199	38.1%	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56473489	56473489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370769	-1	known	p.D1768E	0.982	157	0%	55	30.9%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMSmart_SM00250,superfamily_Plakin repeat
FNDC1	84624	genome.wustl.edu	37	6	159660742	159660742	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000329629	+1	known	p.A1354T	0.000	246	0%	337	41.2%	0	-	-	-	-	NULL
CUX1	1523	genome.wustl.edu	37	7	101459346	101459346	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001913.2	+1	reviewed	p.W12*	1.000	111	0%	152	34.2%	2	0%	-	-	-	NULL
WHSC1L1	54904	genome.wustl.edu	37	8	38189004	38189004	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_023034.1	-1	reviewed	p.E337A	1.000	261	0.4%	273	48.4%	21	33.3%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_PWWP,superfamily_Tudor/PWWP/MBT
PKHD1L1	93035	genome.wustl.edu	37	8	110476595	110476595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177531.4	+1	validated	p.L2512M	1.000	142	0%	32	40.6%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMSmart_SM00710
COL5A1	1289	genome.wustl.edu	37	9	137687112	137687112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000093.3	+1	reviewed	p.P917L	1.000	212	0%	276	43.1%	8	0%	probably_damaging(0.99)	tolerated(0.46)	neutral(0.454)	HMMPfam_Collagen
TUBAL3	79861	genome.wustl.edu	37	10	5436059	5436059	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024803.2	-1	validated	p.P254	1.000	286	0%	308	44.8%	0	-	-	-	-	superfamily_Tubulin C-terminal domain-like
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130G	1.000	291	0%	73	76.7%	45	91.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
NRAP	4892	genome.wustl.edu	37	10	115413835	115413835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198060.2	-1	validated	p.A137V	0.932	212	0%	55	47.3%	0	-	benign(0.016)	tolerated(0.14)	neutral(0.250)	NULL
MUC5B	727897	genome.wustl.edu	37	11	1267760	1267760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.G3220E	0.000	834	0%	934	46.9%	22	59%	unknown(0)	-	-	NULL
IGSF22	283284	genome.wustl.edu	37	11	18736168	18736168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173588.3	-1	validated	p.R512H	0.310	262	0%	234	46.6%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	superfamily_SSF48726
OR4A16	81327	genome.wustl.edu	37	11	55110792	55110792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005274.1	+1	provisional	p.G39V	0.385	150	0%	45	44.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
OR4D6	219983	genome.wustl.edu	37	11	59224495	59224495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004708.1	+1	provisional	p.R21Q	0.000	556	0%	369	14.1%	0	-	benign(0.001)	tolerated(0.51)	neutral(0.009)	superfamily_SSF81321
NUDT22	84304	genome.wustl.edu	37	11	63994220	63994220	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128612.1	+1	validated	p.R32	1.000	46	0%	56	41.1%	64	51.5%	-	-	-	NULL
PRSS23	11098	genome.wustl.edu	37	11	86519583	86519583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007173.4	+1	validated	p.E300K	1.000	168	0%	119	47.1%	391	31.4%	probably_damaging(0.978)	tolerated(0.44)	neutral(0.433)	superfamily_Trypsin-like serine proteases
TMPRSS5	80975	genome.wustl.edu	37	11	113561588	113561588	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030770.2	-1	reviewed	p.G346	1.000	46	0%	56	48.2%	0	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
PCSK7	9159	genome.wustl.edu	37	11	117079691	117079691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004716.2	-1	reviewed	p.R538Q	0.880	169	0%	151	21.2%	38	0%	benign(0.161)	deleterious(0.04)	neutral(0.363)	HMMPfam_P_proprotein,superfamily_Gal_bind_like
IGSF9B	22997	genome.wustl.edu	37	11	133794781	133794781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014987.1	-1	validated	p.R685W	1.000	95	0%	149	48.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CHD4	1108	genome.wustl.edu	37	12	6701926	6701926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001273.2	-1	reviewed	p.P904T	1.000	196	0%	192	43.8%	79	45.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
MSRB3	253827	genome.wustl.edu	37	12	65722349	65722350	+	In_Frame_Ins	INS	-	-	ATA	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198080.2	+1	validated	p.85in_frame_insN	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_SelR,superfamily_Mss4_like
KNTC1	9735	genome.wustl.edu	37	12	123068907	123068907	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014708.4	+1	reviewed	p.D1116N	0.273	302	0%	253	36.4%	1	100%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
KNTC1	9735	genome.wustl.edu	37	12	123069517	123069517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014708.4	+1	reviewed	p.D1172N	0.999	193	0%	206	45.1%	0	-	possibly_damaging(0.7)	tolerated(0.4)	neutral(0.268)	NULL
PNMA1	9240	genome.wustl.edu	37	14	74179357	74179357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006029.4	-1	validated	p.R329H	0.970	50	0%	66	47%	43	37.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BAHD1	22893	genome.wustl.edu	37	15	40754326	40754326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014952.3	+1	validated	p.R550C	1.000	53	0%	58	19%	8	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
THSD4	79875	genome.wustl.edu	37	15	72039269	72039269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024817.2	+1	provisional	p.R710L	1.000	64	0%	83	39.8%	6	16.6%	probably_damaging(0.994)	tolerated(0.66)	neutral(0.455)	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
TPSG1	25823	genome.wustl.edu	37	16	1272275	1272275	+	Missense_Mutation	SNP	C	C	T	rs143120059	by1000genomes	TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012467.3	-1	reviewed	p.R193H	0.000	9	0.000	19	0.579	0	-	possibly_damaging(0.812)	deleterious(0.02)	deleterious(0.689)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
TRAF7	84231	genome.wustl.edu	37	16	2221293	2221293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032271.2	+1	validated	p.S126L	0.989	51	0%	47	48.9%	42	33.3%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_RING/U-box
B3GNT9	84752	genome.wustl.edu	37	16	67183868	67183868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033309.2	-1	validated	p.A174V	0.001	26	0%	28	53.6%	12	50%	benign(0.005)	tolerated(0.29)	neutral(0.029)	HMMPfam_Galactosyl_T
MYH2	4620	genome.wustl.edu	37	17	10428768	10428768	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100112.1	-1	reviewed	p.Q1513*	1.000	192	0.5%	108	49.1%	0	-	-	-	-	HMMPfam_Myosin_tail_1
MED24	9862	genome.wustl.edu	37	17	38178659	38178659	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422942	-1	known	p.R92*	0.002	192	0.5%	236	42.8%	72	48.6%	-	-	-	NULL
SLC4A1	6521	genome.wustl.edu	37	17	42328788	42328788	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000342.3	-1	reviewed	p.R827Q	1.000	135	0%	216	43.5%	3	66.6%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_HCO3_cotransp
HELZ	9931	genome.wustl.edu	37	17	65134141	65134141	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014877.3	-1	validated	p.V953	0.998	351	0%	115	39.1%	3	0%	-	-	-	superfamily_SSF52540
AFG3L2	10939	genome.wustl.edu	37	18	12367358	12367358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006796.1	-1	reviewed	p.R106C	0.003	306	0.3%	203	15.3%	13	7.6%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
CABYR	26256	genome.wustl.edu	37	18	21736770	21736770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012189.2	+1	reviewed	p.E435D	0.001	51	0%	36	55.6%	2	50%	unknown(0)	deleterious(0)	-	NULL
CLEC4M	10332	genome.wustl.edu	37	19	7833780	7833780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014257.4	+1	reviewed	p.A369V	0.002	262	0%	222	18.5%	0	-	benign(0.004)	tolerated(0.61)	neutral(0.004)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
NR2F6	2063	genome.wustl.edu	37	19	17343188	17343188	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005234.3	-1	validated	p.F396	1.000	93	0%	128	45.3%	125	48.8%	-	-	-	NULL
ARHGAP33	115703	genome.wustl.edu	37	19	36278418	36278418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052948.3	+1	reviewed	p.R823Q	0.822	15	0%	22	31.8%	3	33.3%	possibly_damaging(0.939)	deleterious(0.01)	deleterious(0.790)	NULL
LILRB1	10859	genome.wustl.edu	37	19	55148204	55148204	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081637.1	+1	reviewed	p.Q612K	0.008	435	0%	413	35.1%	6	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
SSTR4	6754	genome.wustl.edu	37	20	23016948	23016948	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001052.2	+1	validated	p.Y276	0.976	526	0%	689	44.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
KIF3B	9371	genome.wustl.edu	37	20	30904625	30904625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004798.2	+1	reviewed	p.R566C	1.000	167	0.6%	63	50.8%	18	38.8%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
JPH2	57158	genome.wustl.edu	37	20	42788455	42788455	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020433.4	-1	reviewed	p.H324	1.000	76	0%	77	28.6%	0	-	-	-	-	HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
ABHD16B	140701	genome.wustl.edu	37	20	62493566	62493566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080622.3	+1	validated	p.V225M	1.000	42	0%	49	49%	8	25%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
TIAM1	7074	genome.wustl.edu	37	21	32492843	32492843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003253.2	-1	validated	p.R1540Q	0.935	134	0%	69	33.3%	6	50%	benign(0.045)	deleterious(0.01)	neutral(0.408)	NULL
PNPLA5	150379	genome.wustl.edu	37	22	44280171	44280171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138814.3	-1	reviewed	p.S335L	0.001	90	0%	83	21.7%	0	-	probably_damaging(0.998)	tolerated(1)	deleterious(0.474)	NULL
FANCB	2187	genome.wustl.edu	37	X	14861927	14861927	+	Missense_Mutation	SNP	T	T	A	rs35806617		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018113.1	-1	reviewed	p.E781V	0.008	334	0%	138	50.7%	2	0%	probably_damaging(0.962)	tolerated(0.24)	neutral(0.443)	NULL
MAP3K15	389840	genome.wustl.edu	37	X	19444398	19444398	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000338883	-1	known	p.L410	1.000	181	0%	91	34.1%	0	-	-	-	-	NULL
HEPH	9843	genome.wustl.edu	37	X	65474907	65474907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138737.3	+1	reviewed	p.P868Q	1.000	177	0%	50	42%	7	0%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_Cupredoxins
CXorf65	158830	genome.wustl.edu	37	X	70324227	70324227	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001025265.2	-1	validated	p.L116Q	0.315	193	0%	167	43.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
BGN	633	genome.wustl.edu	37	X	152770303	152770303	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001711.4	+1	reviewed	p.R72	0.995	115	0%	157	44.6%	185	0%	-	-	-	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058
PDZD4	57595	genome.wustl.edu	37	X	153070284	153070284	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032512.2	-1	provisional	p.S278	0.954	43	0%	63	42.9%	1	0%	-	-	-	NULL
L1CAM	3897	genome.wustl.edu	37	X	153128232	153128232	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11Z-01	TCGA-B5-A11Z-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000425.3	-1	reviewed	p.N1220	0.898	150	0%	178	41%	0	-	-	-	-	NULL
